BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036717
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 188/560 (33%), Positives = 284/560 (50%), Gaps = 66/560 (11%)
Query: 2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
FL L++LD+S NKL+G+F + + T+L++L + +N F G L L +
Sbjct: 218 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 276
Query: 62 SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP------------------------- 96
++N FTGE+P + L +++S N F G +P
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 97 SSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQ--L 154
++ KM+GL+ LD+S N F+GEL +SL SL+ LDLS+NNF G I PN + L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214
Q LYL NN F+GKI L +EL+ L +S N LSG IPS +G+ S L+ L + N+LEG
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 215 NIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSAL 273
IP + + LE L + N+L+G + S L N +++ + L NN L G IP R L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 274 ETLDLRDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYG 333
L L +N+FSG IP ++ + R L +DL+ N G
Sbjct: 517 AILKLSNNSFSGNIPAELGD------------------------CRSLIWLDLNTNLFNG 552
Query: 334 SIPACITNSLFWKVGNESL-YQLDEEGADVGNVDIRDYYNSTVQL----RLDESDLRWLV 388
+IPA ++F + G + + + + N ++ + L + L L
Sbjct: 553 TIPA----AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 389 KQVEVNFMTKNRYESYKGVILEH---MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNF 445
+ N +T Y + ++ M LD+S N L+G IP EIG + + LNL +N
Sbjct: 609 TRNPCN-ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 446 LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFS 505
+SGSIP+ +L+ + LDLS NKL+G+IP ++ L L++ D+S NNLSGPIP+ QF
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Query: 506 TFDESSYRGNLHLCGPPINK 525
TF + + N LCG P+ +
Sbjct: 728 TFPPAKFLNNPGLCGYPLPR 747
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 159/528 (30%), Positives = 244/528 (46%), Gaps = 67/528 (12%)
Query: 9 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFS-GFQLTGAQHGLLSLDISKNSFT 67
LK+L +S NK++G+ N LE L + +N+FS G G L LDIS N +
Sbjct: 180 LKHLAISGNKISGDVDVSRCVN---LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236
Query: 68 GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
G+ + + + L +NIS N F G IP ++ L++L ++ N F GE+ L C
Sbjct: 237 GDFSRAISTCTE-LKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIK-DGLLRSTELMVLDISNN 186
+L LDLS N+F G + P + + + L+ L L +N+FSG++ D LL+ L VLD+S N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 187 RLSGHIPSWMGNFSY---------------------------LQILSMSKNLLEGNIPVQ 219
SG +P + N S LQ L + N G IP
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 220 FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDL 278
++ +L L++S N LSG++ S+L +LS + L L N L G IP LETL L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 279 RDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPAC 338
N+ +G IP ++ + L G IP + RL L I+ LS+N G+IPA
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 339 I--TNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFM 396
+ SL W N +L+ N T+ + + ++ NF+
Sbjct: 534 LGDCRSLIWLDLNTNLF------------------NGTIPAAMFKQS-----GKIAANFI 570
Query: 397 TKNRYESYK--GVILE-HMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPES 453
RY K G+ E H AG L E G ++ L + N++ G +
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLL---EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 454 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501
F N + LD+S+N L+G IP ++ + L ++ +N++SG IPD+
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 144/473 (30%), Positives = 215/473 (45%), Gaps = 67/473 (14%)
Query: 40 INNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI 99
IN S SGF+ + + L SLD+S+NS +G + +S+
Sbjct: 89 INGSVSGFKCSAS---LTSLDLSRNSLSGPV-----------------------TTLTSL 122
Query: 100 AKMQGLRFLDVSTN--NFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM---NLTQL 154
GL+FL+VS+N +F G++S L N SL LDLS N+ G ++ +L
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLDLSANSISGANVVGWVLSDGCGEL 180
Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214
+ L + N SG + + R L LD+S+N S IP ++G+ S LQ L +S N L G
Sbjct: 181 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG 237
Query: 215 NIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSA-- 272
+ + +L++LNIS N G I L L S+++L L N G IP+ F G+
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQYLSLAENKFTGEIPD-FLSGACDT 295
Query: 273 LETLDLRDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIP-HQLCRLRKLGIMDLSHNRL 331
L LDL N+F G +P S G +P L ++R L ++DLS N
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 332 YGSIPACITNSLFWKVGNESLYQLDE-----EGADVGNVDIRDYYNSTVQLRLDESDLRW 386
G +P +TN + SL LD G + N+ ++ N+ +L L +
Sbjct: 356 SGELPESLTNL------SASLLTLDLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGFTG 408
Query: 387 LVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFL 446
+ N + L LS N L+G IPS +G L + L L N L
Sbjct: 409 KIPPTLSN--------------CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 447 SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP 499
G IP+ +K +E+L L N L G+IP L+ +L+ +S N L+G IP
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 172/408 (42%), Gaps = 73/408 (17%)
Query: 158 YLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW--MGNFSYLQILSMSKNLLEGN 215
+L N+H +G + G S L LD+S N LSG + + +G+ S L+ L++S N L+
Sbjct: 83 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 216 IPVQFNDLL---DLEILNISENNLSGSMISTLNLS----SVEHLYLQNNALGGSIPNTFF 268
P + + L LE+L++S N++SG+ + LS ++HL + N + G +
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 197
Query: 269 RGSALETLDLRDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSH 328
R LE LD+ NNFS IP + + S L G + +L ++++S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 329 NRLYGSIPACITNSL----------------FWKVGNESLYQLDEEGADVGNVDIRDYYN 372
N+ G IP SL F ++L LD G + ++
Sbjct: 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA-VPPFFG 315
Query: 373 STVQLRLDESDLRWLVKQVEVNFMTKNR--------YESYKGVILEHMAG-------LDL 417
S L ++ ++ + K R + + G + E + LDL
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 418 SSNE--------------------------LTGNIPSEIGDLQNIHGLNLSYNFLSGSIP 451
SSN TG IP + + + L+LS+N+LSG+IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 452 ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP 499
S +L + L L N L G+IP +L + +L + +N+L+G IP
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 171/397 (43%), Gaps = 60/397 (15%)
Query: 129 SLIWLDLSNNNFDGQI--FPNYMNLTQLQLLYLDNN--HFSGKIKDGLLRSTELMVLDIS 184
SL LDLS N+ G + + + + L+ L + +N F GK+ GL + L VLD+S
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 159
Query: 185 NNRLSG-HIPSWM--GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
N +SG ++ W+ L+ L++S N + G++ V ++LE L++S NN S +
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP 217
Query: 242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXXX 301
+ S+++HL + N L G + L+ L++ N F G IP
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP------------- 264
Query: 302 XXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
P+P L+ L + L+ N+ G IP F ++L LD G
Sbjct: 265 --------PLP-----LKSLQYLSLAENKFTGEIPD------FLSGACDTLTGLDLSGNH 305
Query: 362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNR--------YESYKGVILEHMA 413
+ ++ S L ++ ++ + K R + + G + E +
Sbjct: 306 FYGA-VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 414 GL-------DLSSNELTGNI-PSEIGDLQN-IHGLNLSYNFLSGSIPESFSNLKMIESLD 464
L DLSSN +G I P+ + +N + L L N +G IP + SN + SL
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 465 LSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501
LS N L+G IP L L L + N L G IP +
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 188/560 (33%), Positives = 284/560 (50%), Gaps = 66/560 (11%)
Query: 2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
FL L++LD+S NKL+G+F + + T+L++L + +N F G L L +
Sbjct: 215 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 273
Query: 62 SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP------------------------- 96
++N FTGE+P + L +++S N F G +P
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 97 SSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQ--L 154
++ KM+GL+ LD+S N F+GEL +SL SL+ LDLS+NNF G I PN + L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214
Q LYL NN F+GKI L +EL+ L +S N LSG IPS +G+ S L+ L + N+LEG
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 215 NIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSAL 273
IP + + LE L + N+L+G + S L N +++ + L NN L G IP R L
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 274 ETLDLRDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYG 333
L L +N+FSG IP ++ + R L +DL+ N G
Sbjct: 514 AILKLSNNSFSGNIPAELGD------------------------CRSLIWLDLNTNLFNG 549
Query: 334 SIPACITNSLFWKVGNESL-YQLDEEGADVGNVDIRDYYNSTVQL----RLDESDLRWLV 388
+IPA ++F + G + + + + N ++ + L + L L
Sbjct: 550 TIPA----AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 605
Query: 389 KQVEVNFMTKNRYESYKGVILEH---MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNF 445
+ N +T Y + ++ M LD+S N L+G IP EIG + + LNL +N
Sbjct: 606 TRNPCN-ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 446 LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFS 505
+SGSIP+ +L+ + LDLS NKL+G+IP ++ L L++ D+S NNLSGPIP+ QF
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Query: 506 TFDESSYRGNLHLCGPPINK 525
TF + + N LCG P+ +
Sbjct: 725 TFPPAKFLNNPGLCGYPLPR 744
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 159/528 (30%), Positives = 244/528 (46%), Gaps = 67/528 (12%)
Query: 9 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFS-GFQLTGAQHGLLSLDISKNSFT 67
LK+L +S NK++G+ N LE L + +N+FS G G L LDIS N +
Sbjct: 177 LKHLAISGNKISGDVDVSRCVN---LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 233
Query: 68 GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
G+ + + + L +NIS N F G IP ++ L++L ++ N F GE+ L C
Sbjct: 234 GDFSRAISTCTE-LKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIK-DGLLRSTELMVLDISNN 186
+L LDLS N+F G + P + + + L+ L L +N+FSG++ D LL+ L VLD+S N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 187 RLSGHIPSWMGNFSY---------------------------LQILSMSKNLLEGNIPVQ 219
SG +P + N S LQ L + N G IP
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 220 FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDL 278
++ +L L++S N LSG++ S+L +LS + L L N L G IP LETL L
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 279 RDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPAC 338
N+ +G IP ++ + L G IP + RL L I+ LS+N G+IPA
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 339 I--TNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFM 396
+ SL W N +L+ N T+ + + ++ NF+
Sbjct: 531 LGDCRSLIWLDLNTNLF------------------NGTIPAAMFKQS-----GKIAANFI 567
Query: 397 TKNRYESYK--GVILE-HMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPES 453
RY K G+ E H AG L E G ++ L + N++ G +
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLL---EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 454 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501
F N + LD+S+N L+G IP ++ + L ++ +N++SG IPD+
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 144/473 (30%), Positives = 215/473 (45%), Gaps = 67/473 (14%)
Query: 40 INNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI 99
IN S SGF+ + + L SLD+S+NS +G + +S+
Sbjct: 86 INGSVSGFKCSAS---LTSLDLSRNSLSGPV-----------------------TTLTSL 119
Query: 100 AKMQGLRFLDVSTN--NFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM---NLTQL 154
GL+FL+VS+N +F G++S L N SL LDLS N+ G ++ +L
Sbjct: 120 GSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLDLSANSISGANVVGWVLSDGCGEL 177
Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214
+ L + N SG + + R L LD+S+N S IP ++G+ S LQ L +S N L G
Sbjct: 178 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG 234
Query: 215 NIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSA-- 272
+ + +L++LNIS N G I L L S+++L L N G IP+ F G+
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQYLSLAENKFTGEIPD-FLSGACDT 292
Query: 273 LETLDLRDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIP-HQLCRLRKLGIMDLSHNRL 331
L LDL N+F G +P S G +P L ++R L ++DLS N
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 332 YGSIPACITNSLFWKVGNESLYQLDE-----EGADVGNVDIRDYYNSTVQLRLDESDLRW 386
G +P +TN + SL LD G + N+ ++ N+ +L L +
Sbjct: 353 SGELPESLTNL------SASLLTLDLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGFTG 405
Query: 387 LVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFL 446
+ N + L LS N L+G IPS +G L + L L N L
Sbjct: 406 KIPPTLSN--------------CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 447 SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP 499
G IP+ +K +E+L L N L G+IP L+ +L+ +S N L+G IP
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 172/408 (42%), Gaps = 73/408 (17%)
Query: 158 YLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW--MGNFSYLQILSMSKNLLEGN 215
+L N+H +G + G S L LD+S N LSG + + +G+ S L+ L++S N L+
Sbjct: 80 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 216 IPVQFNDLL---DLEILNISENNLSGSMISTLNLS----SVEHLYLQNNALGGSIPNTFF 268
P + + L LE+L++S N++SG+ + LS ++HL + N + G +
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 194
Query: 269 RGSALETLDLRDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSH 328
R LE LD+ NNFS IP + + S L G + +L ++++S
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 329 NRLYGSIPACITNSL----------------FWKVGNESLYQLDEEGADVGNVDIRDYYN 372
N+ G IP SL F ++L LD G + ++
Sbjct: 254 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA-VPPFFG 312
Query: 373 STVQLRLDESDLRWLVKQVEVNFMTKNR--------YESYKGVILEHMAG-------LDL 417
S L ++ ++ + K R + + G + E + LDL
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 418 SSNE--------------------------LTGNIPSEIGDLQNIHGLNLSYNFLSGSIP 451
SSN TG IP + + + L+LS+N+LSG+IP
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 452 ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP 499
S +L + L L N L G+IP +L + +L + +N+L+G IP
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 171/397 (43%), Gaps = 60/397 (15%)
Query: 129 SLIWLDLSNNNFDGQI--FPNYMNLTQLQLLYLDNN--HFSGKIKDGLLRSTELMVLDIS 184
SL LDLS N+ G + + + + L+ L + +N F GK+ GL + L VLD+S
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 156
Query: 185 NNRLSG-HIPSWM--GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
N +SG ++ W+ L+ L++S N + G++ V ++LE L++S NN S +
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP 214
Query: 242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXXX 301
+ S+++HL + N L G + L+ L++ N F G IP
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP------------- 261
Query: 302 XXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
P+P L+ L + L+ N+ G IP F ++L LD G
Sbjct: 262 --------PLP-----LKSLQYLSLAENKFTGEIPD------FLSGACDTLTGLDLSGNH 302
Query: 362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNR--------YESYKGVILEHMA 413
+ ++ S L ++ ++ + K R + + G + E +
Sbjct: 303 FYGA-VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 414 GL-------DLSSNELTGNI-PSEIGDLQN-IHGLNLSYNFLSGSIPESFSNLKMIESLD 464
L DLSSN +G I P+ + +N + L L N +G IP + SN + SL
Sbjct: 362 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 465 LSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501
LS N L+G IP L L L + N L G IP +
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 135/296 (45%), Gaps = 33/296 (11%)
Query: 3 LRHQFNLKYLDLSHNKLAGNFPTWL--LENNTKLEVLYLINNSFSG--FQLTGAQHGLLS 58
L + NL ++ LS+N+L G P W+ LEN L +L L NNSFSG G L+
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLEN---LAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 59 LDISKNSFTGELPQNMG----------IVLQKLVYMNISKNSFEGNIPSSIAKMQGLRF- 107
LD++ N F G +P M I ++ VY+ E + ++ + QG+R
Sbjct: 540 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 599
Query: 108 ----------LDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLL 157
++++ + G S + N S+++LD+S N G I ++ L +L
Sbjct: 600 QLNRLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIPKEIGSMPYLFIL 658
Query: 158 YLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIP 217
L +N SG I D + L +LD+S+N+L G IP M + L + +S N L G IP
Sbjct: 659 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Query: 218 V--QFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGS 271
QF + LN L G + + S+ + + G + N +F+G+
Sbjct: 719 EMGQFETFPPAKFLN--NPGLCGYPLPRCDPSNADGYAHHQRSHGRRLENLYFQGA 772
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 115/251 (45%), Gaps = 27/251 (10%)
Query: 281 NNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACIT 340
NN G IP I + + + G IP L +++ L +D S+N L G++P I+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 341 NSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNR 400
+ +L + +G + I D Y S +L + + N +T
Sbjct: 147 SL-------PNLVGITFDGNRISGA-IPDSYGSFSKL--------FTSMTISRNRLTGKI 190
Query: 401 YESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLS---GSIPESFSNL 457
++ + ++A +DLS N L G+ G +N ++L+ N L+ G + S
Sbjct: 191 PPTFANL---NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS---- 243
Query: 458 KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLH 517
K + LDL +N++ G +P LT+L L +VS+NNL G IP FD S+Y N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 518 LCGPPINKSCT 528
LCG P+ +CT
Sbjct: 304 LCGSPL-PACT 313
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 126/321 (39%), Gaps = 59/321 (18%)
Query: 171 GLLRSTELMVLDISNNRLSG-------HIPSWMGNFSYLQILSMSK-NLLEGNIPVQFND 222
G+L T+ ++N LSG IPS + N YL L + N L G IP
Sbjct: 40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 223 LLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNN 282
L L L I+ N+SG+ IP+ + L TLD N
Sbjct: 100 LTQLHYLYITHTNVSGA-----------------------IPDFLSQIKTLVTLDFSYNA 136
Query: 283 FSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGI-MDLSHNRLYGSIPACITN 341
SG +P I+ + G IP KL M +S NRL G IP N
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 342 SLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKN-- 399
++ VD+ S L D S L K + + KN
Sbjct: 197 ------------------LNLAFVDL-----SRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 400 RYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKM 459
++ K + +++ GLDL +N + G +P + L+ +H LN+S+N L G IP+ NL+
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQR 292
Query: 460 IESLDLSHNK-LNGQIPPQLT 479
+ ++NK L G P T
Sbjct: 293 FDVSAYANNKCLCGSPLPACT 313
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 104/230 (45%), Gaps = 33/230 (14%)
Query: 138 NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS------------- 184
NN G I P LTQL LY+ + + SG I D L + L+ LD S
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 185 -----------NNRLSGHIPSWMGNFSYL-QILSMSKNLLEGNIPVQFNDLLDLEILNIS 232
NR+SG IP G+FS L +++S+N L G IP F + L+L +++S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLS 205
Query: 233 ENNLSGSMISTLNLS--SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQ 290
N L G S L S + + ++L N+L + + L LDLR+N G +P
Sbjct: 206 RNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN-LNGLDLRNNRIYGTLPQG 263
Query: 291 INEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNR-LYGS-IPAC 338
+ + L G IP Q L++ + ++N+ L GS +PAC
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 38/215 (17%)
Query: 9 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT-----GAQHGLLSLDISK 63
L YL ++H ++G P +L ++++ L ++ S++ T + L+ +
Sbjct: 103 LHYLYITHTNVSGAIPDFL----SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 64 NSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL 123
N +G +P + G + M IS+N G IP + A + L F+D+S N G+ S
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS--- 214
Query: 124 VTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKI-KDGLLRSTELMVLD 182
+F + N Q ++L N + + K GL S L LD
Sbjct: 215 -------------------VLFGSDKN---TQKIHLAKNSLAFDLGKVGL--SKNLNGLD 250
Query: 183 ISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIP 217
+ NNR+ G +P + +L L++S N L G IP
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 12 LDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ--LTGAQHGLLSLDISKNSFTGE 69
+ +S N+L G P N L + L N G L G+ + ++KNS +
Sbjct: 179 MTISRNRLTGKIPPTFA--NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 70 LPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
L + +G+ + L +++ N G +P + +++ L L+VS NN GE+ Q
Sbjct: 237 LGK-VGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 173/398 (43%), Gaps = 71/398 (17%)
Query: 202 LQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST--LNLSSVEHLYLQNNAL 259
L++L+++ N + F L +L++LN+S N L G + S+ L V ++ LQ N +
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 260 GGSIPNTFFRGSALETLDLRDN-----NFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQ 314
TF L+TLDLRDN +F IP +L G ++
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD---------------IFLSG---NK 392
Query: 315 LCRLRKLGI----MDLSHNRLYGSIPACITNSLFW--KVGNESLYQLDEEGADVGNVDIR 368
L L K+ + + LS NRL + L++ +V + + L++ + D
Sbjct: 393 LVTLPKINLTANLIHLSENRLEN------LDILYFLLRVPHLQILILNQNRFSSCSGDQT 446
Query: 369 DYYNSTV-QLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIP 427
N ++ QL L E+ L ++ + T+ ++ ++G L H+ L L+ N L P
Sbjct: 447 PSENPSLEQLFLGENML-------QLAWETELCWDVFEG--LSHLQVLYLNHNYLNSLPP 497
Query: 428 SEIGDLQNIHGLNLSYNFLS----GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHS 483
L + GL+L+ N L+ +P + +E LD+S N+L + P S
Sbjct: 498 GVFSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILDISRNQL---LAPNPDVFVS 548
Query: 484 LSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCT-----NLPKLLEPSS 538
LS D+++N + STF N+ + GPP + C + L S+
Sbjct: 549 LSVLDITHNKFICEC----ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLST 604
Query: 539 KGAEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPY 576
+G ++E + + F F+ VTL L L+ IL + +
Sbjct: 605 EGCDEEEVLKSLKFSL-FIVCTVTLTLFLMTILTVTKF 641
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 113/257 (43%), Gaps = 45/257 (17%)
Query: 68 GELPQNMGIVLQKLVYM-NISKNSF-EGNIPSSIAKMQGLRFLDVSTN--NFAGELSQSL 123
G+ P L++L + N N+F E ++PS L FLD+S N +F G SQS
Sbjct: 341 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-------LEFLDLSRNGLSFKGCCSQSD 393
Query: 124 VTNCFSLIWLDLSNNNFDGQIF--PNYMNLTQLQ-----------------------LLY 158
SL +LDLS F+G I N++ L QL+ L+Y
Sbjct: 394 FGT-ISLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449
Query: 159 LDNNHFSGKIK-DGLLRS-TELMVLDISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGN 215
LD +H ++ +G+ + L VL ++ N + +P L L +S+ LE
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 216 IPVQFNDLLDLEILNISENN-LSGSMISTLNLSSVEHL-YLQNNALGGSIPNTFFRGSAL 273
P FN L L++LN+S NN S L+S++ L Y N+ + S+L
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 569
Query: 274 ETLDLRDNNFSGRIPHQ 290
L+L N+F+ HQ
Sbjct: 570 AFLNLTQNDFACTCEHQ 586
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 425 NIPSEIGDLQNIHGLNLSYNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHS 483
N P IG L+ + LN+++N + S +PE FSNL +E LDLS NK+ L LH
Sbjct: 141 NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198
Query: 484 L 484
+
Sbjct: 199 M 199
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 44/230 (19%)
Query: 68 GELPQNMGIVLQKLVYM-NISKNSF-EGNIPSSIAKMQGLRFLDVSTN--NFAGELSQSL 123
G+ P L++L + N N+F E ++PS L FLD+S N +F G SQS
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-------LEFLDLSRNGLSFKGCCSQSD 369
Query: 124 VTNCFSLIWLDLSNNNFDGQIF--PNYMNLTQLQ-----------------------LLY 158
SL +LDLS F+G I N++ L QL+ L+Y
Sbjct: 370 FGTT-SLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 159 LDNNHFSGKIK-DGLLRS-TELMVLDISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGN 215
LD +H ++ +G+ + L VL ++ N + +P L L +S+ LE
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 216 IPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIP 264
P FN L L++LN++ N L + L+S++ ++L N S P
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 425 NIPSEIGDLQNIHGLNLSYNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHS 483
N P IG L+ + LN+++N + S +PE FSNL +E LDLS NK+ L LH
Sbjct: 117 NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Query: 484 L 484
+
Sbjct: 175 M 175
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 113/257 (43%), Gaps = 45/257 (17%)
Query: 68 GELPQNMGIVLQKLVYM-NISKNSF-EGNIPSSIAKMQGLRFLDVSTN--NFAGELSQSL 123
G+ P L++L + N N+F E ++PS L FLD+S N +F G SQS
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-------LEFLDLSRNGLSFKGCCSQSD 369
Query: 124 VTNCFSLIWLDLSNNNFDGQIF--PNYMNLTQLQ-----------------------LLY 158
SL +LDLS F+G I N++ L QL+ L+Y
Sbjct: 370 FGTT-SLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 159 LDNNHFSGKIK-DGLLRS-TELMVLDISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGN 215
LD +H ++ +G+ + L VL ++ N + +P L L +S+ LE
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 216 IPVQFNDLLDLEILNISENN-LSGSMISTLNLSSVEHL-YLQNNALGGSIPNTFFRGSAL 273
P FN L L++LN+S NN S L+S++ L Y N+ + S+L
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 274 ETLDLRDNNFSGRIPHQ 290
L+L N+F+ HQ
Sbjct: 546 AFLNLTQNDFACTCEHQ 562
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 425 NIPSEIGDLQNIHGLNLSYNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHS 483
N P IG L+ + LN+++N + S +PE FSNL +E LDLS NK+ L LH
Sbjct: 117 NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Query: 484 L 484
+
Sbjct: 175 M 175
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 25/255 (9%)
Query: 50 TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKN--SFEGNIPSSIAKMQGLRF 107
TG L++ N LP + L +L +++S N SF+G S L++
Sbjct: 24 TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82
Query: 108 LDVSTN-------NFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLD 160
LD+S N NF G L Q L LD ++N Q+ + L+ L+YLD
Sbjct: 83 LDLSFNGVITMSSNFLG-LEQ--------LEHLDFQHSNLK-QMSEFSVFLSLRNLIYLD 132
Query: 161 NNHFSGKIK-DGLLRS-TELMVLDISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGNIP 217
+H ++ +G+ + L VL ++ N + +P L L +S+ LE P
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 218 VQFNDLLDLEILNISENN-LSGSMISTLNLSSVEHL-YLQNNALGGSIPNTFFRGSALET 275
FN L L++LN+S NN S L+S++ L Y N+ + S+L
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252
Query: 276 LDLRDNNFSGRIPHQ 290
L+L N+F+ HQ
Sbjct: 253 LNLTQNDFACTCEHQ 267
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
Query: 147 NYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNN-RLSGHIPSWMGNFSYLQIL 205
++ + L +L+L +N +G T L LD+S+N +L P+ +L L
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 206 SMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIP 264
+ + L+ P F L L+ L + +NNL +T +L ++ HL+L N + S+P
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI-PSVP 168
Query: 265 NTFFRG-SALETLDLRDNNFSGRIPHQINE 293
FRG +L+ L L N+ + PH +
Sbjct: 169 EHAFRGLHSLDRLLLHQNHVARVHPHAFRD 198
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 7/143 (4%)
Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNL-LE 213
Q ++L N S L +L + +N L+G + + L+ L +S N L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 214 GNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFRGSA 272
P F L L L++ L L+++++LYLQ+N L NTF
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 273 LETLDLRDNNFSGRIPHQINEHS 295
L L L N RIP + EH+
Sbjct: 154 LTHLFLHGN----RIP-SVPEHA 171
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 103/471 (21%), Positives = 172/471 (36%), Gaps = 81/471 (17%)
Query: 83 YMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDG 142
Y+++S NS +S +++Q L+FL V + + SLI L L N F
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 143 QIFPNYMNLTQLQLLYLDNNHFSGKIKDG----LLRSTELMVLDISNNRLSGHIPSWMGN 198
+ L L++L L + G + G L S E++VL NN S+ N
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR-DNNIKKIQPASFFLN 152
Query: 199 FSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNA 258
+L ++ N ++ + DLL N G + L LSS+ +
Sbjct: 153 MRRFHVLDLTFNKVKS---ICEEDLL----------NFQGKHFTLLRLSSITLQDMNEYW 199
Query: 259 LGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRL 318
LG F+ +++ TLDL N F +
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAK----------------------------- 230
Query: 319 RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLR 378
R + +I SL + Y + G+ G+ + +D N T +
Sbjct: 231 -----------RFFDAIAGTKIQSLIL----SNSYNM---GSSFGHTNFKDPDNFTFK-G 271
Query: 379 LDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLD---LSSNELTGNIPSEIGDLQN 435
L+ S V+ ++K++ + + H L+ L+ NE+ + L +
Sbjct: 272 LEASG-------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 436 IHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
+ LNLS NFL F NL +E LDLS+N + L +L + + N L
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 496 GPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSKGAEDESA 546
+PD FD + + L P + SC + L +K ++ E
Sbjct: 385 S-VPD----GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 430
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 129/311 (41%), Gaps = 19/311 (6%)
Query: 78 LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSN 137
L+KLV ++ NSF+ + A LR L + N +L + +L LDLS+
Sbjct: 302 LKKLV---LNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSH 358
Query: 138 NNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIP-S 194
++ + N NL LQ L L N G +L +LD++ L P S
Sbjct: 359 SDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
Query: 195 WMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNL----SSVE 250
N L++L++S LL+ + L DL LN+ N+ IS NL S+E
Sbjct: 419 PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLE 478
Query: 251 HLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEHSXXXXXXXXXXYLQG 309
L L + L SI F G + LDL N+ +G ++ H ++
Sbjct: 479 ILILSSCNLL-SIDQQAFHGLRNVNHLDLSHNSLTGDSMDALS-HLKGLYLNMASNNIRI 536
Query: 310 PIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLD--EEGADVGNVDI 367
PH L L + I++LSHN L +N F E+L++L+ EE +
Sbjct: 537 IPPHLLPALSQQSIINLSHNPL----DCTCSNIHFITWYKENLHKLEDSEETTCANPPSL 592
Query: 368 RDYYNSTVQLR 378
R S V+L
Sbjct: 593 RGVKLSDVKLH 603
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 409 LEHMAGLDLSSNELTGNIPS--EIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLS 466
LE++ LDLS +++ + ++ +L+++ LNLSYN G ++F +E LD++
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 467 HNKLNGQIP-PQLTELHSLSKFDVSY 491
L+ + P LH L ++S+
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSH 433
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 157 LYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNI 216
LYLD N F+ K+ L L ++D+SNNR+S N + L L +S N L
Sbjct: 36 LYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 217 PVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQNNAL 259
P F+ L L +L++ N++S N LS++ HL + N L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 416 DLSSNELTGN----IPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN 471
D++ L GN +P E+ + +++ ++LS N +S +SFSN+ + +L LS+N+L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 472 GQIPPQLTELHSLSKFDVSYNNLS 495
P L SL + N++S
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%)
Query: 150 NLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSK 209
N L L+ L NN S T+L+ L +S NRL P L++LS+
Sbjct: 52 NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111
Query: 210 NLLEGNIPVQFNDLLDLEILNISENNL 236
N + FNDL L L I N L
Sbjct: 112 NDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNK 469
+H+ +DLS+N ++ ++ + L LSYN L P +F LK + L L N
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 470 LNGQIPPQLTELHSLSKFDVSYNNL 494
++ +L +LS + N L
Sbjct: 114 ISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS--GKIKDGLLRSTELMVLDISNNRLSG 190
LD SNN +F N +LT+L+ L L N KI + + L LDIS N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 191 HIPSWMGNFSY---LQILSMSKNLLEGNIPVQFNDL-LDLEILNISENNLSGSMISTLNL 246
G+ S+ L L+MS N+L I F L +++L++ N + + L
Sbjct: 388 -YDEKKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKIKSIPKQVVKL 443
Query: 247 SSVEHLYLQNNALGGSIPNTFF-RGSALETLDLRDNNFSGRIPH 289
+++ L + +N L S+P+ F R ++L+ + L N + P
Sbjct: 444 EALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 25/127 (19%)
Query: 59 LDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLR----------FL 108
+D SKN +P+++ QK +NIS+N S I + LR +L
Sbjct: 5 VDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60
Query: 109 DVSTNNFAGELS-------QSLVTNC---FSLIWLDLSNNNFDG-QIFPNYMNLTQLQLL 157
D+S F EL + + +C +L LDLS N FD I + N++QL+ L
Sbjct: 61 DISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120
Query: 158 YLDNNHF 164
L H
Sbjct: 121 GLSTTHL 127
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 12/138 (8%)
Query: 133 LDLSN---NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS 189
LDLSN N IF Y LT+L YL+ N + ++ + + L VLD+S+NRL+
Sbjct: 229 LDLSNLQIFNISANIF-KYDFLTRL---YLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
Query: 190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSV 249
+P+ +G+ L+ N++ +P +F +L +L+ L + N L + L SV
Sbjct: 284 S-LPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341
Query: 250 EHL--YLQNNALGGSIPN 265
L YL++N +P+
Sbjct: 342 TGLIFYLRDNRPEIPLPH 359
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 430 IGDLQNIHGLNLSYNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 484
IG L+ + LN+++N + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 430 IGDLQNIHGLNLSYNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 484
IG L+ + LN+++N + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 430 IGDLQNIHGLNLSYNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 484
IG L+ + LN+++N + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 430 IGDLQNIHGLNLSYNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 484
IG L+ + LN+++N + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 430 IGDLQNIHGLNLSYNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 484
IG L+ + LN+++N + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 122/284 (42%), Gaps = 19/284 (6%)
Query: 60 DISKNSFTGELPQNM-GIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGE 118
DIS F G ++ I LQK + NIS N+F GL+ LD++ + + E
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC--------FSGLQELDLTATHLS-E 292
Query: 119 LSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTE- 177
L LV +L L LS N F+ + N L L + N ++ G L + E
Sbjct: 293 LPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351
Query: 178 LMVLDISNNRL--SGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
L LD+S++ + S + N S+LQ L++S N F + LE+L+++
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 236 LSGSMIST--LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNF-SGRIPHQIN 292
L + NL ++ L L ++ L S F AL+ L+L+ N+F G I +
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471
Query: 293 EHSXXXXXXXXXXY--LQGPIPHQLCRLRKLGIMDLSHNRLYGS 334
+ + L H L+ + +DLSHNRL S
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 138/348 (39%), Gaps = 65/348 (18%)
Query: 230 NISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPH 289
++ + ++S ++ L SVE + LQ + NTF S L+ LDL + S +P
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295
Query: 290 QINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP------ACITNSL 343
+ S + LC++ L+H + G+ C+ N
Sbjct: 296 GLVGLSTLKKLVLSANKFEN-----LCQISASNFPSLTHLSIKGNTKRLELGTGCLEN-- 348
Query: 344 FWKVGNESLYQLDEEGADVGNVDIRDY---------YNSTVQLR------------LDES 382
+ L D E +D N+ +R+ YN + L+ LD +
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408
Query: 383 DLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPS-----------EIG 431
R VK + F K + L H + LD+SS +L +P+ G
Sbjct: 409 FTRLKVKDAQSPF---QNLHLLKVLNLSH-SLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 432 DLQNIHGLN---------LSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH 482
++Q + L LS+ LS +F++LKM+ +DLSHN+L L+ L
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524
Query: 483 SLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNL 530
+ +++ N++S +P S S + ++L P++ +C+N+
Sbjct: 525 GI-YLNLASNHISIILP-----SLLPILSQQRTINLRQNPLDCTCSNI 566
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 110/262 (41%), Gaps = 15/262 (5%)
Query: 34 LEVLYLINNSFSGFQLTGAQ--HGLLSLDISKNSFTGELPQNM-GI-VLQKLVYMNISKN 89
+E L L + FS T Q L LD++ G LP M G+ +L+KLV +S N
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLV---LSVN 308
Query: 90 SFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM 149
F+ S A L L + N L + +L LDLS+N+ + +
Sbjct: 309 HFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQ 368
Query: 150 --NLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIP-SWMGNFSYLQILS 206
NL+ LQ L L +N G +L +LD++ RL + P S N +LQ+L+
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
Query: 207 MSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNL----SSVEHLYLQNNALGGS 262
++ L+ + L L LN+ N+ I+ NL S+E L L + L
Sbjct: 429 LTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSI 488
Query: 263 IPNTFFRGSALETLDLRDNNFS 284
F + +DL N+ +
Sbjct: 489 DQQAFHSLGKMSHVDLSHNSLT 510
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 151/373 (40%), Gaps = 32/373 (8%)
Query: 159 LDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPV 218
+D+ S + GL + + L++ +R S + F+ LQ L ++ L+G +P
Sbjct: 235 IDDEDISSAMLKGLCEMS-VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPS 292
Query: 219 QFNDLLDLEILNISENNLSG-SMISTLNLSSVEHLYLQNNALGGSI-PNTFFRGSALETL 276
L L+ L +S N+ IS N S+ HLY++ N + + L+TL
Sbjct: 293 GMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTL 352
Query: 277 DLRDNNF--SGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGS 334
DL N+ S Q+ S G +L ++DL+ RL+ +
Sbjct: 353 DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHIN 412
Query: 335 IPAC-ITNSLFWKVGNESLYQLDEEGADVG---------NVDIRDYYNSTVQLRLDESDL 384
P N F +V N + LD + N+ + + T+ +++L
Sbjct: 413 APQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTIT----KTNL 468
Query: 385 RWLVKQVEVNFMTKNRYESYKGVI---LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNL 441
V +EV ++ S L M+ +DLS N LT + + L+ I+ LNL
Sbjct: 469 LQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIY-LNL 527
Query: 442 SYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501
+ N ++ P L +++LSHN L+ + +H L+ + + + L G
Sbjct: 528 AANSINIISPRLLPILSQQSTINLSHNPLDCTC----SNIHFLTWYKENLHKLEG----S 579
Query: 502 EQFSTFDESSYRG 514
E+ + + S RG
Sbjct: 580 EETTCANPPSLRG 592
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 20/241 (8%)
Query: 230 NISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPH 289
+I + ++S +M+ L SVE L LQ + TF + L+ LDL + G +P
Sbjct: 234 DIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPS 292
Query: 290 QINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN 349
+ + + QLC++ L+H + G++ L VG
Sbjct: 293 GMKGLNLLKKLVLSVNHFD-----QLCQISAANFPSLTHLYIRGNV-----KKLHLGVGC 342
Query: 350 -ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI 408
E L L + D+ + DI ++QL+ + S L+ L + N + +++K
Sbjct: 343 LEKLGNL--QTLDLSHNDIEASDCCSLQLK-NLSHLQTL--NLSHNEPLGLQSQAFKEC- 396
Query: 409 LEHMAGLDLSSNELTGNIP-SEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467
+ LDL+ L N P S +L + LNL+Y FL S + L ++ L+L
Sbjct: 397 -PQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKG 455
Query: 468 N 468
N
Sbjct: 456 N 456
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 27/159 (16%)
Query: 129 SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS--TELMVLDISNN 186
S +L+ + N F +F L +LQ L L N K L+ + L LD+S N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNL 246
L+ H +Y + + ++++L +LN+S N L+GS+ L
Sbjct: 414 SLNSH--------AYDRTCAWAESIL---------------VLNLSSNMLTGSVFRCLP- 449
Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285
V+ L L NN + SIP AL+ L++ N
Sbjct: 450 PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKS 487
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 392 EVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD-LQNIHGLNLSYNFLSGSI 450
+V MTKN + + LD+S N L + ++I LNLS N L+GS+
Sbjct: 394 KVALMTKN---------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Query: 451 PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500
++ LDL +N++ IP +T L +L + +V+ N L +PD
Sbjct: 445 FRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD 490
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192
L LS N+ P+ L++L++L L +N L + +L LD+S+NRL
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 193 PSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHL 252
M + +L + ++L + +F +L L L LS + L+L V HL
Sbjct: 117 CCPMASLRHLDLSFNDFDVLP--VCKEFGNLTKLTFL-----GLSAAKFRQLDLLPVAHL 169
Query: 253 YL 254
+L
Sbjct: 170 HL 171
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 36/176 (20%)
Query: 92 EGNIPSSIAKMQGLRFLDVSTN--NFAGELSQS-LVTNCFSLIWLDLSNNNFDGQIF--P 146
+G+I + L +LD+S N +F+G S S L TN SL LDLS F+G I
Sbjct: 334 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLRHLDLS---FNGAIIMSA 388
Query: 147 NYMNLTQLQ-----------------------LLYLDNNHFSGKIK-DGL-LRSTELMVL 181
N+M L +LQ LLYLD ++ + KI DG+ L T L L
Sbjct: 389 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 448
Query: 182 DISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL 236
++ N + + + N + L L +SK LE F+ L L++LN+S NNL
Sbjct: 449 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 18/200 (9%)
Query: 308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEE--GADVGNV 365
+G I + L L +DLS N L S C + S +G SL LD GA + +
Sbjct: 334 KGSISFKKVALPSLSYLDLSRNAL--SFSGCCSYS---DLGTNSLRHLDLSFNGAIIMSA 388
Query: 366 DIR--------DYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVIL--EHMAGL 415
+ D+ +ST++ + S L K + ++ N + G+ L + L
Sbjct: 389 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 448
Query: 416 DLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
++ N N S + + N+ L+LS L F L ++ L++SHN L
Sbjct: 449 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 508
Query: 475 PPQLTELHSLSKFDVSYNNL 494
+L+SLS D S+N +
Sbjct: 509 SSHYNQLYSLSTLDCSFNRI 528
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 28/210 (13%)
Query: 8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQ----HGLLSLDISK 63
+L YLDLS N L+ F ++ L ++ SF+G + A L LD
Sbjct: 346 SLSYLDLSRNALS--FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 403
Query: 64 NSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL 123
++ + + L+KL+Y++IS + + + + L L ++ N+F ++
Sbjct: 404 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 463
Query: 124 VTNCFSLIWLDLSNNN--------FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS 175
N +L +LDLS FD +N++ LL+LD++H++ +
Sbjct: 464 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN--------QL 515
Query: 176 TELMVLDISNNRLSG------HIPSWMGNF 199
L LD S NR+ H P + F
Sbjct: 516 YSLSTLDCSFNRIETSKGILQHFPKSLAFF 545
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 430 IGDLQNIHGLNLSYNFL-SGSIPESFSNLKMIESLDLSHN 468
IG L + LN+++NF+ S +P FSNL + +DLS+N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 36/176 (20%)
Query: 92 EGNIPSSIAKMQGLRFLDVSTN--NFAGELSQS-LVTNCFSLIWLDLSNNNFDGQIF--P 146
+G+I + L +LD+S N +F+G S S L TN SL LDLS F+G I
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLRHLDLS---FNGAIIMSA 393
Query: 147 NYMNLTQLQ-----------------------LLYLDNNHFSGKIK-DGL-LRSTELMVL 181
N+M L +LQ LLYLD ++ + KI DG+ L T L L
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453
Query: 182 DISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL 236
++ N + + + N + L L +SK LE F+ L L++LN+S NNL
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 18/200 (9%)
Query: 308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEE--GADVGNV 365
+G I + L L +DLS N L S C + S +G SL LD GA + +
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNAL--SFSGCCSYS---DLGTNSLRHLDLSFNGAIIMSA 393
Query: 366 DIR--------DYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVIL--EHMAGL 415
+ D+ +ST++ + S L K + ++ N + G+ L + L
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453
Query: 416 DLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
++ N N S + + N+ L+LS L F L ++ L++SHN L
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513
Query: 475 PPQLTELHSLSKFDVSYNNL 494
+L+SLS D S+N +
Sbjct: 514 SSHYNQLYSLSTLDCSFNRI 533
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 28/210 (13%)
Query: 8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQ----HGLLSLDISK 63
+L YLDLS N L+ F ++ L ++ SF+G + A L LD
Sbjct: 351 SLSYLDLSRNALS--FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408
Query: 64 NSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL 123
++ + + L+KL+Y++IS + + + + L L ++ N+F ++
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
Query: 124 VTNCFSLIWLDLSNNN--------FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS 175
N +L +LDLS FD +N++ LL+LD++H++ +
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN--------QL 520
Query: 176 TELMVLDISNNRLSG------HIPSWMGNF 199
L LD S NR+ H P + F
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFF 550
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 430 IGDLQNIHGLNLSYNFL-SGSIPESFSNLKMIESLDLSHN 468
IG L + LN+++NF+ S +P FSNL + +DLS+N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 7/180 (3%)
Query: 10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ--LTGAQHGLLSLDISKNSFT 67
K LDL NKL+ + P+ TKL +LYL +N + L +L ++ N
Sbjct: 40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 68 GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
LP + L L + + +N + P + L +L + N L + +
Sbjct: 99 A-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKL 156
Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTE-LMVLDISNN 186
SL L L NN + LT+L+ L LDNN ++ +G S E L +L + N
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 388 VKQVEVNFMTKNRYESYK-GVI--LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYN 444
+K +E ++T N+ ++ GV L ++A L L N+L P L + L+L YN
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 445 FLSGSIPES-FSNLKMIESLDLSHNKLNGQIPP----QLTELHSLS 485
L S+P+ F L ++ L L +N+L ++P +LTEL +L
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLK 187
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 181 LDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
LD+ +N+LS + L++L ++ N L+ F +L +LE L +++N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 241 ISTLN-LSSVEHLYLQNNALGGSIPNTF 267
I + L ++ L L N L P F
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVF 129
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 83/205 (40%), Gaps = 18/205 (8%)
Query: 83 YMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDG 142
Y+++S NS +S +++Q L+FL V + + SLI L L N F
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 143 QIFPNYMNLTQLQLLYLDNNHFSGKIKDG----LLRSTELMVLDISNNRLSGHIPSWMGN 198
+ L L++L L + G + G L S E++VL NN S+ N
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR-DNNIKKIQPASFFLN 152
Query: 199 FSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNA 258
+L ++ N ++ + DLL N G + L LSS+ +
Sbjct: 153 MRRFHVLDLTFNKVKS---ICEEDLL----------NFQGKHFTLLRLSSITLQDMNEYW 199
Query: 259 LGGSIPNTFFRGSALETLDLRDNNF 283
LG F+ +++ TLDL N F
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGF 224
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 147 NYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMV--LDISNNRLSGHIPSWMGNFSYLQI 204
NY++L+ + L+ FS +++D E L I NN G S L I
Sbjct: 33 NYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRG--------LSSLII 83
Query: 205 LSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST---LNLSSVEHLYLQNNALGG 261
L + N FN L +LE+L +++ NL G+++S L+S+E L L++N +
Sbjct: 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 262 SIPNTFF 268
P +FF
Sbjct: 144 IQPASFF 150
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%)
Query: 119 LSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTEL 178
LS + + L L L+NN + +LTQL LYL N R T+L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 179 MVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSG 238
L ++ N+L + LQ LS+S N L+ F+ L L+ + + N
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
Query: 239 SMISTLNLS 247
S TL LS
Sbjct: 194 SRCETLYLS 202
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
L H+ L+L N+LTG P+ +I L L N + + F L +++L+L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDE----SSYRGNLHLCGPP 522
+++ +P L+SL+ +++ N P + F E S G CG P
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN----PFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 411 HMAGLDLSSNELTGNIPSE--IGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
H L L+ NEL G I S+ G L ++ L L N L+G P +F I+ L L N
Sbjct: 30 HTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC 527
K+ LH L ++ N +S +P +F+ + +L+L P N +C
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMP-----GSFEHLNSLTSLNLASNPFNCNC 142
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 181 LDISNN-RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGS 239
LD+S+N +L P+ L L + + L+ P F L L+ L + +N L
Sbjct: 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144
Query: 240 MISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINE 293
T +L ++ HL+L N + S+P FRG +L+ L L N + PH +
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 148 YMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSM 207
+ L LQ LYL +N D L L + NR+S L L +
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 208 SKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQNN 257
+N + P F DL L L + NNLS L L ++++L L +N
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNL-LE 213
Q ++L N S L +L + +N L+ + + L+ L +S N L
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 214 GNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFR 269
P F+ L L L++ L L+++++LYLQ+NAL ++P+ FR
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFR 150
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 181 LDISNN-RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGS 239
LD+S+N +L P+ L L + + L+ P F L L+ L + +N L
Sbjct: 84 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 143
Query: 240 MISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINE 293
T +L ++ HL+L N + S+P FRG +L+ L L N + PH +
Sbjct: 144 PDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 198
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 148 YMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSM 207
+ L LQ LYL +N D L L + NR+S L L +
Sbjct: 124 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 183
Query: 208 SKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQNN 257
+N + P F DL L L + NNLS L L ++++L L +N
Sbjct: 184 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNL-LE 213
Q ++L N S L +L + +N L+ + + L+ L +S N L
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 214 GNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFR 269
P F+ L L L++ L L+++++LYLQ+NAL ++P+ FR
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFR 149
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
L VLD+S NRL+ + LQ L + N L+ P LE L+++ NNL+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 238 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 268
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 197 GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQ 255
G L L +S N L+ ++P+ L L +L++S N L+ + L L ++ LYL+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 256 NNALGGSIPNTFFRGSALETLDLRDNNFS 284
N L P LE L L +NN +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
L VLD+S NRL+ + LQ L + N L+ P LE L+++ NNL+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 238 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 268
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 197 GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQ 255
G L L +S N L+ ++P+ L L +L++S N L+ + L L ++ LYL+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 256 NNALGGSIPNTFFRGSALETLDLRDNNFS 284
N L P LE L L +NN +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
L VLD+S NRL+ + LQ L + N L+ P LE L+++ NNL+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 238 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 268
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 197 GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQ 255
G L L +S N L+ ++P+ L L +L++S N L+ + L L ++ LYL+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 256 NNALGGSIPNTFFRGSALETLDLRDNNFS 284
N L P LE L L +NN +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
L VLD+S NRL+ + LQ L + N L+ P LE L+++ NNL+
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Query: 238 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 268
LN L +++ L LQ N+L +IP FF
Sbjct: 163 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 193
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 197 GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQ 255
G L L +S N L+ ++P+ L L +L++S N L+ + L L ++ LYL+
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 256 NNALGGSIPNTFFRGSALETLDLRDNNFS 284
N L P LE L L +NN +
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
L VLD+S NRL+ + LQ L + N L+ P LE L+++ NNL+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 238 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 268
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 197 GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQ 255
G L L +S N L+ ++P+ L L +L++S N L+ + L L ++ LYL+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 256 NNALGGSIPNTFFRGSALETLDLRDNNFS 284
N L P LE L L +NN +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 198 NFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQN 256
+ +L+IL +SKNL+ FN L L L + +N L+ LS + L+L+N
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 257 NALGGSIPN-TFFRGSALETLDL 278
N + SIP+ F R +L LDL
Sbjct: 117 NPI-ESIPSYAFNRVPSLRRLDL 138
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
L + L+LS N L P L ++ L L + ++ +F +LK +E L+LSHN
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 469 KLNGQIPPQLTELHSLSKFDVSYN 492
L T LH L + +++N
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 36/234 (15%)
Query: 8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSL---DISKN 64
N +YL+L N + T ++ LE+L L N ++ GA +GL SL ++ N
Sbjct: 36 NTRYLNLQENSIQV-IRTDTFKHLRHLEILQLSKNLVRKIEV-GAFNGLPSLNTLELFDN 93
Query: 65 SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPS-SIAKMQGLRFLDVSTNNFAGELSQSL 123
T +P L KL + + N E +IPS + ++ LR LD+ GEL +
Sbjct: 94 RLTT-VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDL------GELKR-- 143
Query: 124 VTNCFSLIWLD-LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLD 182
L+ +S F+G + Y+NL L + N L+R EL +
Sbjct: 144 ---------LEYISEAAFEGLVNLRYLNLGMCNLKDIPN-------LTALVRLEEL---E 184
Query: 183 ISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL 236
+S NRL P + L+ L + + F+DL LE LN+S NNL
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 19/109 (17%)
Query: 4 RHQFNLKYLDLSHNKLAGNFPTWLLENNT------KLEVLYLINNSFSGFQLTGAQ---- 53
+H +L+YLDLS N + + L+N+ L+ L L N + + TG
Sbjct: 331 QHLKSLEYLDLSENLMVEEY----LKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTL 386
Query: 54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISK---NSFEGNIPSSI 99
L ++DISKNSF +P+ +K+ Y+N+S +S G IP ++
Sbjct: 387 KNLTNIDISKNSFHS-MPETCQWP-EKMKYLNLSSTRIHSVTGCIPKTL 433
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNK 469
E + LDLS+N +T S++ N+ L L+ N ++ +SFS+L +E LDLS+N
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 470 LN 471
L+
Sbjct: 86 LS 87
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467
+ E + LDLS+N +T S++ N+ L L+ N ++ +SFS+L +E LDLS+
Sbjct: 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109
Query: 468 NKLN 471
N L+
Sbjct: 110 NYLS 113
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 198 NFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQN 256
+ +L+IL +SKNL+ FN L L L + +N L+ LS + L+L+N
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 257 NALGGSIPN-TFFRGSALETLDL 278
N + SIP+ F R +L LDL
Sbjct: 117 NPI-ESIPSYAFNRVPSLRRLDL 138
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
L + L+LS N L P L ++ L L + ++ +F +LK +E L+LSHN
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 469 KLNGQIPPQLTELHSLSKFDVSYN 492
L T LH L + +++N
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 106/238 (44%), Gaps = 42/238 (17%)
Query: 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSL---DISK 63
N +YL+L N + T ++ LE+L L N ++ GA +GL SL ++
Sbjct: 35 VNTRYLNLQENSIQV-IRTDTFKHLRHLEILQLSKNLVRKIEV-GAFNGLPSLNTLELFD 92
Query: 64 NSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPS-SIAKMQGLRFLDVSTNNFAGELSQS 122
N T +P L KL + + N E +IPS + ++ LR LD+ GEL +
Sbjct: 93 NRLT-TVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDL------GELKR- 143
Query: 123 LVTNCFSLIWLD-LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
L+ +S F+G + Y+NL L + N L+R EL
Sbjct: 144 ----------LEYISEAAFEGLVNLRYLNLGMCNLKDIPN-------LTALVRLEEL--- 183
Query: 182 DISNNRLSGHIP-SWMGNFSYLQILSMSKNL--LEGNIPVQFNDLLDLEILNISENNL 236
++S NRL P S+ G S ++ M + +E N F+DL LE LN+S NNL
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERN---AFDDLKSLEELNLSHNNL 238
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 398 KNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNL 457
+ R+ + I LDL N + E ++ L L+ N +S P +F+NL
Sbjct: 20 RKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL 79
Query: 458 KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNL 494
+ +L L N+L T L +L+K D+S N +
Sbjct: 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
TE +LD+ NR+ +F +L+ L +++N++ P FN+L +L L + N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 236 LS 237
L
Sbjct: 92 LK 93
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 411 HMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL 470
H+ L+L+ N ++ P +L N+ L L N L F+ L + LD+S NK+
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 471 NGQIPPQLTELHSLSKFDVSYNNL 494
+ +L++L +V N+L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 27/182 (14%)
Query: 78 LQKLVYMNISKN---SFEGNIPSSIA--KMQGLRFLDVSTNNFAGELSQSLVTNCFSLIW 132
L+KL + ISKN N+PSS+ ++ R V F+G + NC +
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNM----NCIEMGG 156
Query: 133 LDLSNNNFDGQIFP----NYMNLTQLQL-------------LYLDNNHFSGKIKDGLLRS 175
L N+ F+ F NY+ +++ +L L+LD+N + LLR
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRY 216
Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
++L L + +N++ + L+ L + N L +P DL L+++ + NN
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNN 275
Query: 236 LS 237
++
Sbjct: 276 IT 277
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 12/166 (7%)
Query: 95 IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQL 154
+P I+ L LD+ N+ + EL + L L L NN + L +L
Sbjct: 48 VPKEISPDTTL--LDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE- 213
Q LY+ NH +I L + L+ L I +NR+ + + M N LE
Sbjct: 105 QKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161
Query: 214 -GNIPVQFNDLLDLEILNISENNLSG---SMISTLNLSSVEHLYLQ 255
G P F D L L L ISE L+G + TLN ++H +Q
Sbjct: 162 SGFEPGAF-DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ 206
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
LDL +N+++ + LQ+++ L L N +S ++FS L+ ++ L +S N L +I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEI 117
Query: 475 PPQL 478
PP L
Sbjct: 118 PPNL 121
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 27/193 (13%)
Query: 106 RFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFP--NYMNLTQLQLLYLDNNH 163
++L ++ N+FA LV + L+ ++ N D P NLT L L + +
Sbjct: 451 KYLQLTRNSFA------LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 504
Query: 164 FSGKIKDGLLRSTELMVLDISNNRLS--------GHIPSWMGNFSYLQILSMSKNLLEGN 215
+ + +GL +L +LD+ +N L+ G ++ S+L IL++ N +
Sbjct: 505 INDDMLEGL---EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-E 560
Query: 216 IPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTF---FRG 270
IPV+ F DL +L+I+++ NNL+ S N S++ L LQ N + F FR
Sbjct: 561 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 620
Query: 271 SALETLDLRDNNF 283
L LD+R N F
Sbjct: 621 --LTELDMRFNPF 631
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
T + VL++++N+L + +S L L + N + P L L++LN+ N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 236 LSGSMISTLNLSS-VEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285
LS T + + L+L +N++ N F + L TLDL N S
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 27/193 (13%)
Query: 106 RFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFP--NYMNLTQLQLLYLDNNH 163
++L ++ N+FA LV + L+ ++ N D P NLT L L + +
Sbjct: 446 KYLQLTRNSFA------LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 499
Query: 164 FSGKIKDGLLRSTELMVLDISNNRLS--------GHIPSWMGNFSYLQILSMSKNLLEGN 215
+ + +GL +L +LD+ +N L+ G ++ S+L IL++ N +
Sbjct: 500 INDDMLEGL---EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-E 555
Query: 216 IPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTF---FRG 270
IPV+ F DL +L+I+++ NNL+ S N S++ L LQ N + F FR
Sbjct: 556 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 615
Query: 271 SALETLDLRDNNF 283
L LD+R N F
Sbjct: 616 --LTELDMRFNPF 626
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
T + VL++++N+L + +S L L + N + P L L++LN+ N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 236 LSGSMISTLNLSS-VEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285
LS T + + L+L +N++ N F + L TLDL N S
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
L VLD+S NRL+ + LQ L + N L+ P LE L+++ N+L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 238 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 268
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%)
Query: 119 LSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTEL 178
LS + + L L L+NN + +LTQL LYL N R T+L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 179 MVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSG 238
L ++ N+L + LQ LS+S N L+ F+ L L+ + + N
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
Query: 239 SMISTLNLS 247
S L LS
Sbjct: 194 SRCEILYLS 202
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 87 SKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFP 146
S +S IP+ K LD+ + A LS + L WL+L N
Sbjct: 25 SLDSVPSGIPADTEK------LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAG 77
Query: 147 NYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILS 206
+ +LT+L L L NN + T+L L + N+L + L+ L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 207 MSKNLLEGNIPVQFNDLLDLEILNISENNL 236
++ N L+ F+ L +L+ L++S N L
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 27/193 (13%)
Query: 106 RFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFP--NYMNLTQLQLLYLDNNH 163
++L ++ N+FA LV + L+ ++ N D P NLT L L + +
Sbjct: 441 KYLQLTRNSFA------LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494
Query: 164 FSGKIKDGLLRSTELMVLDISNNRLS--------GHIPSWMGNFSYLQILSMSKNLLEGN 215
+ + +GL +L +LD+ +N L+ G ++ S+L IL++ N +
Sbjct: 495 INDDMLEGL---EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-E 550
Query: 216 IPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTF---FRG 270
IPV+ F DL +L+I+++ NNL+ S N S++ L LQ N + F FR
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610
Query: 271 SALETLDLRDNNF 283
L LD+R N F
Sbjct: 611 --LTELDMRFNPF 621
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
T + VL++++N+L + +S L L + N + P L L++LN+ N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 236 LSGSMISTLNLSS-VEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285
LS T + + L+L +N++ N F + L TLDL N S
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 33/208 (15%)
Query: 34 LEVLYLINNSFSGFQLTGAQHGLL---SLDISKNSFTGELPQNMGIVLQKLVYMNISKNS 90
LE+L L N ++ GA +GL +L++ N T +P + L KL + + N
Sbjct: 90 LEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNP 147
Query: 91 FEGNIPS-SIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM 149
E +IPS + ++ LR LD+ GEL + S I S F+G Y+
Sbjct: 148 IE-SIPSYAFNRIPSLRRLDL------GELKR------LSYI----SEGAFEGLSNLRYL 190
Query: 150 NLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSK 209
NL L + N L +L LD+S N LS P +LQ L M +
Sbjct: 191 NLAMCNLREIPN----------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240
Query: 210 NLLEGNIPVQFNDLLDLEILNISENNLS 237
+ ++ F++L L +N++ NNL+
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 167 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDL 226
++ DG+ ST +L++ N++ + + +L+IL +S+N + FN L +L
Sbjct: 57 EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 227 EILNISENNLS----GSMISTLNLSSVEHLYLQNNALGGSIPN-TFFRGSALETLDL 278
L + +N L+ G+ + LS ++ L+L+NN + SIP+ F R +L LDL
Sbjct: 115 NTLELFDNRLTTIPNGAFVY---LSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDL 167
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 111/254 (43%), Gaps = 47/254 (18%)
Query: 220 FNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIPN-TFFRGSALETLD 277
F L LEIL +S N++ I N L+++ L L +N L +IPN F S L+ L
Sbjct: 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142
Query: 278 LRDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA 337
LR+N IP Y IP LR+L + +L RL +
Sbjct: 143 LRNNPIES-IP----------------SYAFNRIP----SLRRLDLGELK--RL-----S 174
Query: 338 CITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMT 397
I+ F + N L ++R+ N T ++LDE DL N ++
Sbjct: 175 YISEGAFEGLSNLRYLNL-------AMCNLREIPNLTPLIKLDELDL-------SGNHLS 220
Query: 398 KNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNL 457
R S++G++ H+ L + +++ + +LQ++ +NL++N L+ + F+ L
Sbjct: 221 AIRPGSFQGLM--HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278
Query: 458 KMIESLDLSHNKLN 471
+E + L HN N
Sbjct: 279 HHLERIHLHHNPWN 292
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 413 AGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN- 471
A LDL +N++T + +L+N+H L L N +S P +F+ L +E L LS N+L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 472 --GQIPPQLTELH 482
++P L EL
Sbjct: 115 LPEKMPKTLQELR 127
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 413 AGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN- 471
A LDL +N++T + +L+N+H L L N +S P +F+ L +E L LS N+L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 472 --GQIPPQLTELH 482
++P L EL
Sbjct: 115 LPEKMPKTLQELR 127
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 34/198 (17%)
Query: 347 VGNESLYQLDEEGAD---VGNVDIRDYYNSTVQLRL------DESDLRWLVKQVEVNFMT 397
V L Q+ AD + ++D +Y N+ Q+ D + L+ L K V++ M
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI-LMN 93
Query: 398 KNRYESYKGVI-LEHMAGLDLSSNELTGNIP--------------SEIGDLQNIHGLN-- 440
N+ + L ++ GL L +N++T P + I D+ + GL
Sbjct: 94 NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 153
Query: 441 LSYNFLSGSIPE--SFSNLKMIESLDLSHNKLNG-QIPPQLTELHSLSKFDVSYNNLSGP 497
NF S + + +NL +E LD+S NK++ + +LT L SL ++ NN
Sbjct: 154 QQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISD 209
Query: 498 IPDKEQFSTFDESSYRGN 515
I + DE S GN
Sbjct: 210 ITPLGILTNLDELSLNGN 227
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
L VLD+S NRL+ + LQ L + N L+ P LE L+++ N L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 238 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 268
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
L VLD+S NRL+ + LQ L + N L+ P LE L+++ N L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 238 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 268
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 42/238 (17%)
Query: 8 NLKYLDLSHNKLAGNFPTWLLENNT-----KLEVLYLINNSFSGFQLTGAQHGLLSLDIS 62
N +YL+L N + +++ +T LEVL L NS ++ GA +GL SL+
Sbjct: 76 NTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTL 128
Query: 63 K--NSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPS-SIAKMQGLRFLDVSTNNFAGEL 119
+ +++ +P L KL + + N E +IPS + ++ L LD+ +
Sbjct: 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI 187
Query: 120 SQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELM 179
S+ F+L +L+L N PN L L+ L + NHF +I+ G
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFP-EIRPGSFHG---- 240
Query: 180 VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
+ + L +++ +L+E N F+ L L LN++ NNLS
Sbjct: 241 ----------------LSSLKKLWVMNSQVSLIERN---AFDGLASLVELNLAHNNLS 279
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 38/200 (19%)
Query: 347 VGNESLYQLDEEGAD---VGNVDIRDYYNSTVQLRL------DESDLRWLVKQVEVNFMT 397
V L Q+ AD + ++D +Y N+ Q+ D + L+ L K V++ M
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI-LMN 93
Query: 398 KNRYESYKGVI-LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG-------- 448
N+ + L ++ GL L +N++T P + +L N++ L LS N +S
Sbjct: 94 NNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLT 151
Query: 449 SIPE-SFS-----------NLKMIESLDLSHNKLNG-QIPPQLTELHSLSKFDVSYNNLS 495
S+ + SFS NL +E LD+S NK++ + +LT L SL ++ NN
Sbjct: 152 SLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQI 207
Query: 496 GPIPDKEQFSTFDESSYRGN 515
I + DE S GN
Sbjct: 208 SDITPLGILTNLDELSLNGN 227
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 36/189 (19%)
Query: 354 QLDEEGADVGNVDIRDYYNSTVQLRL------DESDLRWLVKQVEVNFMTKNRYESYKGV 407
Q D G + ++D +Y N+ Q+ D + L+ L K V++ M N+ +
Sbjct: 47 QADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI-LMNNNQIADITPL 103
Query: 408 I-LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG------------------ 448
L ++ GL L +N++T P + +L N++ L LS N +S
Sbjct: 104 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQ 161
Query: 449 -SIPESFSNLKMIESLDLSHNKLNG-QIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFST 506
+ + +NL +E LD+S NK++ + +LT L SL ++ NN I +
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTN 217
Query: 507 FDESSYRGN 515
DE S GN
Sbjct: 218 LDELSLNGN 226
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
L VLD+S NRL+ + LQ L + N L+ P LE L+++ N L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 238 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 268
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
L VLD+S NRL+ + LQ L + N L+ P LE L+++ N L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 238 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 268
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 354 QLDEEGADVGNVDIRDYYNSTVQLRL------DESDLRWLVKQVEVNFMTKNRYESYKGV 407
Q D G + ++D +Y N+ Q+ D + L+ L K V++ M N+ +
Sbjct: 47 QADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI-LMNNNQIADITPL 103
Query: 408 I-LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG--------SIPE-SFS-- 455
L ++ GL L +N++T P + +L N++ L LS N +S S+ + SFS
Sbjct: 104 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSN 161
Query: 456 ---------NLKMIESLDLSHNKLNG-QIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFS 505
NL +E LD+S NK++ + +LT L SL ++ NN I +
Sbjct: 162 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILT 217
Query: 506 TFDESSYRGN 515
DE S GN
Sbjct: 218 NLDELSLNGN 227
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 36/189 (19%)
Query: 354 QLDEEGADVGNVDIRDYYNSTVQLRL------DESDLRWLVKQVEVNFMTKNRYESYKGV 407
Q D G + ++D +Y N+ Q+ D + L+ L K V++ M N+ +
Sbjct: 47 QADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI-LMNNNQIADITPL 103
Query: 408 I-LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG------------------ 448
L ++ GL L +N++T P + +L N++ L LS N +S
Sbjct: 104 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQ 161
Query: 449 -SIPESFSNLKMIESLDLSHNKLNG-QIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFST 506
+ + +NL +E LD+S NK++ + +LT L SL ++ NN I +
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTN 217
Query: 507 FDESSYRGN 515
DE S GN
Sbjct: 218 LDELSLNGN 226
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 36/189 (19%)
Query: 354 QLDEEGADVGNVDIRDYYNSTVQLRL------DESDLRWLVKQVEVNFMTKNRYESYKGV 407
Q D G + ++D +Y N+ Q+ D + L+ L K V++ M N+ +
Sbjct: 52 QADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI-LMNNNQIADITPL 108
Query: 408 I-LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG------------------ 448
L ++ GL L +N++T P + +L N++ L LS N +S
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 166
Query: 449 -SIPESFSNLKMIESLDLSHNKLNG-QIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFST 506
+ + +NL +E LD+S NK++ + +LT L SL ++ NN I +
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTN 222
Query: 507 FDESSYRGN 515
DE S GN
Sbjct: 223 LDELSLNGN 231
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 36/189 (19%)
Query: 354 QLDEEGADVGNVDIRDYYNSTVQLRL------DESDLRWLVKQVEVNFMTKNRYESYKGV 407
Q D G + ++D +Y N+ Q+ D + L+ L K V++ M N+ +
Sbjct: 51 QADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI-LMNNNQIADITPL 107
Query: 408 I-LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG------------------ 448
L ++ GL L +N++T P + +L N++ L LS N +S
Sbjct: 108 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 165
Query: 449 -SIPESFSNLKMIESLDLSHNKLNG-QIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFST 506
+ + +NL +E LD+S NK++ + +LT L SL ++ NN I +
Sbjct: 166 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTN 221
Query: 507 FDESSYRGN 515
DE S GN
Sbjct: 222 LDELSLNGN 230
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 79/203 (38%), Gaps = 60/203 (29%)
Query: 12 LDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELP 71
LDLSHN L+ W T L L L +N +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI------------------------ 79
Query: 72 QNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI 131
S E +P + LR+LD+S+N+ L + L ++ +L
Sbjct: 80 ------------------SSEAFVP-----VPNLRYLDLSSNHL-HTLDEFLFSDLQALE 115
Query: 132 WLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSG----KIKDGLLRSTELMVLDISNNR 187
L L NN+ + ++ QLQ LYL N S IKDG + +LM+LD+S+N+
Sbjct: 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNK 174
Query: 188 LSG-------HIPSWMGNFSYLQ 203
L +P+W+ N YL
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLH 197
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 133 LDLSNNNFD---GQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS 189
LDLS+NN + P LT L L L +NH + + + L LD+S+N L
Sbjct: 44 LDLSHNNLSRLRAEWTPT--RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
+ L++L + N + F D+ L+ L +S+N +S
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 94 NIPSSIAKMQGLRFLDVSTNNFA---GELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMN 150
N+P S+ L LD+S NN + E + + +TN SL+ LS+N+ + ++
Sbjct: 32 NVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLL---LSHNHLNFISSEAFVP 86
Query: 151 LTQLQLLYLDNNHFSGKIKDGLLRS--TELMVLDISNNRLSGHIPSWMGNFSYLQILSMS 208
+ L+ L L +NH D L S L VL + NN + + + + LQ L +S
Sbjct: 87 VPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144
Query: 209 KNLLEGNIPVQF----NDLLDLEILNISENNLSGSMISTLNLSSV---EHLYLQNNAL 259
+N + PV+ N L L +L++S N L ++ L LYL NN L
Sbjct: 145 QNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
T L L I NN+++ P + N S L L + N + V+ DL L+ LN+ N
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVK--DLTKLKXLNVGSNQ 276
Query: 236 LSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIP 288
+S IS LN LS + L+L NN LG + L TL L N+ + P
Sbjct: 277 ISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 132 WLDLSNNNFDGQIFPN--YMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS 189
+LDL N+ + PN + LT L LYL N + T L L++S N+L
Sbjct: 32 YLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN-LSS 248
+ L+ L+++ N L+ F+ L L+ L + +N L + L+S
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 249 VEHLYLQNNALGGSIPNTFF 268
+++++L +N + P +
Sbjct: 150 LQYIWLHDNPWDCTCPGIRY 169
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 16/134 (11%)
Query: 372 NSTVQLRLDESDLRWLVKQVE-VNFMTKNRYESYKGVILEHMAGLDLSSN----ELTGN- 425
NS Q+ + SD +K V+ + ++ RY + G L ++ L +N LTGN
Sbjct: 41 NSIDQIIANNSD----IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ 96
Query: 426 ---IPSEIGD-LQNIHGLNLSYNFLSGSIPES-FSNLKMIESLDLSHNKLNGQIPPQLTE 480
+P+ + D L N+ L L N L S+P+ F L + L+L+HN+L +
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK 155
Query: 481 LHSLSKFDVSYNNL 494
L +L++ D+SYN L
Sbjct: 156 LTNLTELDLSYNQL 169
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 25/107 (23%)
Query: 152 TQLQLLYLDNNHFSGKIKDGLL-RSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKN 210
T Q+LYL +N + K++ G+ R T+L LD+ NN+L+ + L LS++ N
Sbjct: 38 TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 96
Query: 211 LLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNN 257
L+ +IP D NL S+ H++L NN
Sbjct: 97 QLK-SIPRGAFD----------------------NLKSLTHIWLLNN 120
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
T+ L ++NN+++ P + LQ L + N L F+ L L L++++N+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 236 LSGSMISTL-NLSSVEHLYLQNN 257
L NL S+ H+YL NN
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 416 DLSSNELTGN--IPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473
DL S L N + E D++ +H + L L ++ LDLSHN+L
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-----LEQLLLVTHLDLSHNRLRA- 477
Query: 474 IPPQLTELHSLSKFDVSYNNL 494
+PP L L L S N L
Sbjct: 478 LPPALAALRCLEVLQASDNAL 498
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 416 DLSSNELTGN--IPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473
DL S L N + E D++ +H + L L ++ LDLSHN+L
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-----LEQLLLVTHLDLSHNRLRA- 477
Query: 474 IPPQLTELHSLSKFDVSYNNL 494
+PP L L L S N L
Sbjct: 478 LPPALAALRCLEVLQASDNAL 498
>pdb|1AEI|A Chain A, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|B Chain B, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|C Chain C, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|D Chain D, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|E Chain E, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|F Chain F, Crystal Structure Of The Annexin Xii Hexamer
Length = 315
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 143 QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLL 173
QIF Y ++ +L N FSG IK+GLL
Sbjct: 205 QIFHEYSKISNKTILQAIENEFSGDIKNGLL 235
>pdb|1DM5|A Chain A, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|B Chain B, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|C Chain C, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|D Chain D, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|E Chain E, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|F Chain F, Annexin Xii E105k Homohexamer Crystal Structure
Length = 315
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 143 QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLL 173
QIF Y ++ +L N FSG IK+GLL
Sbjct: 205 QIFHEYSKISNKTILQAIENEFSGDIKNGLL 235
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 91/223 (40%), Gaps = 34/223 (15%)
Query: 9 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFS-----GFQLTGAQHGLLSLDISK 63
L L L N L+ P + N KL L + NN+ FQ T + L +L +S
Sbjct: 125 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS---LQNLQLSS 180
Query: 64 NSFTGELPQNMGIVLQKLVYMNISKNSFEG-NIPSSIAKMQG---------------LRF 107
N T ++ ++ L + N+S N IP ++ ++ L
Sbjct: 181 NRLTHV---DLSLI-PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 236
Query: 108 LDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK 167
L + NN + + N L+ +DLS N + ++ ++ + +L+ LY+ NN
Sbjct: 237 LKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293
Query: 168 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKN 210
G T L VLD+S+N L H+ F L+ L + N
Sbjct: 294 NLYGQPIPT-LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 28/220 (12%)
Query: 9 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ--LTGAQHGLLSLDISKNSF 66
L L L N L+ P + N KL L + NN+ + A L +L +S N
Sbjct: 119 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 67 TGELPQNMGIVLQKLVYMNISKNSFEG-NIPSSIAKMQG---------------LRFLDV 110
T ++ ++ L + N+S N IP ++ ++ L L +
Sbjct: 178 TH---VDLSLI-PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL 233
Query: 111 STNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD 170
NN + + N L+ +DLS N + ++ ++ + +L+ LY+ NN
Sbjct: 234 QHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290
Query: 171 GLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKN 210
G T L VLD+S+N L H+ F L+ L + N
Sbjct: 291 GQPIPT-LKVLDLSHNHL-LHVERNQPQFDRLENLYLDHN 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,227,166
Number of Sequences: 62578
Number of extensions: 727876
Number of successful extensions: 2100
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1322
Number of HSP's gapped (non-prelim): 503
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)