Query 036717
Match_columns 580
No_of_seqs 542 out of 4622
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-59 2.8E-64 532.9 41.1 511 3-522 89-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.7E-54 1E-58 487.4 37.5 501 6-519 68-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.9E-42 1.1E-46 331.8 8.7 395 35-500 55-457 (873)
4 KOG4194 Membrane glycoprotein 100.0 5.7E-41 1.2E-45 324.5 8.0 404 49-522 46-456 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.2E-40 7E-45 305.9 -10.3 406 4-495 65-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.1E-38 2.3E-43 295.9 -13.5 452 7-518 45-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 2.6E-36 5.7E-41 294.3 -1.6 369 53-499 6-379 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 4.8E-35 1E-39 285.5 -2.8 370 78-523 6-380 (1255)
9 KOG0618 Serine/threonine phosp 100.0 8.9E-34 1.9E-38 289.0 0.4 452 9-493 23-487 (1081)
10 KOG0618 Serine/threonine phosp 100.0 2.6E-33 5.5E-38 285.7 -3.5 425 3-492 41-510 (1081)
11 KOG4237 Extracellular matrix p 99.9 2.9E-29 6.2E-34 233.1 -3.2 406 52-492 65-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 3.1E-24 6.8E-29 244.1 26.6 347 23-469 549-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 3.1E-24 6.7E-29 244.1 26.2 342 70-493 549-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 7E-27 1.5E-31 217.3 -4.3 401 57-496 49-478 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 4.6E-22 9.9E-27 210.3 16.8 194 104-332 202-395 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 9.2E-22 2E-26 208.0 17.4 265 7-315 201-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.2E-20 4.8E-25 199.0 11.3 246 8-284 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.4E-20 1.8E-24 194.6 12.9 139 55-213 179-317 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 4.1E-20 8.8E-25 183.4 5.0 204 127-330 80-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 4.1E-20 8.9E-25 183.4 3.1 280 132-494 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 4.4E-19 9.5E-24 146.9 -4.8 184 243-499 29-216 (264)
22 KOG0617 Ras suppressor protein 99.6 5.3E-18 1.1E-22 140.5 -4.4 179 148-332 29-212 (264)
23 PLN03150 hypothetical protein; 99.6 1.1E-15 2.4E-20 162.7 9.0 118 411-528 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 9.6E-15 2.1E-19 143.1 -3.0 175 246-496 74-248 (722)
25 COG4886 Leucine-rich repeat (L 99.3 5.2E-12 1.1E-16 129.0 8.4 82 412-497 211-292 (394)
26 COG4886 Leucine-rich repeat (L 99.3 6E-12 1.3E-16 128.5 7.4 199 58-266 97-296 (394)
27 PF14580 LRR_9: Leucine-rich r 99.3 7.8E-12 1.7E-16 109.1 6.9 126 30-159 17-147 (175)
28 KOG3207 Beta-tubulin folding c 99.3 9.6E-13 2.1E-17 125.4 1.3 210 29-238 118-340 (505)
29 KOG1909 Ran GTPase-activating 99.3 5.4E-13 1.2E-17 123.7 -0.7 242 78-331 29-310 (382)
30 KOG0532 Leucine-rich repeat (L 99.2 3.8E-13 8.2E-18 132.1 -2.9 211 36-257 54-270 (722)
31 PLN03150 hypothetical protein; 99.2 1.8E-11 3.9E-16 130.7 8.0 92 409-500 441-533 (623)
32 PF14580 LRR_9: Leucine-rich r 99.2 1.1E-11 2.4E-16 108.2 3.6 128 52-184 17-148 (175)
33 KOG1259 Nischarin, modulator o 99.2 6.3E-12 1.4E-16 114.0 1.4 134 292-498 281-415 (490)
34 KOG3207 Beta-tubulin folding c 99.2 4.7E-12 1E-16 120.8 0.2 161 52-213 119-284 (505)
35 KOG1909 Ran GTPase-activating 99.2 7.7E-12 1.7E-16 116.2 1.4 183 77-260 90-311 (382)
36 KOG1259 Nischarin, modulator o 99.1 1.4E-11 3E-16 111.8 1.3 132 269-473 282-414 (490)
37 KOG4658 Apoptotic ATPase [Sign 99.1 1.7E-10 3.7E-15 125.8 7.0 272 30-308 521-807 (889)
38 PF13855 LRR_8: Leucine rich r 99.1 1.3E-10 2.8E-15 83.4 3.7 60 435-494 2-61 (61)
39 PF13855 LRR_8: Leucine rich r 99.0 3.1E-10 6.8E-15 81.4 4.3 61 410-470 1-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.9 7.9E-10 1.7E-14 120.7 5.9 59 409-467 769-828 (889)
41 KOG0531 Protein phosphatase 1, 98.9 1.3E-10 2.9E-15 118.7 -2.6 221 78-311 94-321 (414)
42 KOG0531 Protein phosphatase 1, 98.9 2E-10 4.4E-15 117.3 -2.1 266 7-288 49-322 (414)
43 KOG2120 SCF ubiquitin ligase, 98.7 6.2E-10 1.3E-14 101.3 -3.2 177 8-186 186-373 (419)
44 KOG2120 SCF ubiquitin ligase, 98.7 2.8E-09 6.1E-14 97.1 -0.4 200 10-211 139-349 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.6 8.3E-09 1.8E-13 92.8 -0.1 240 78-332 29-316 (388)
46 KOG4579 Leucine-rich repeat (L 98.5 7E-09 1.5E-13 83.5 -2.8 90 409-501 76-165 (177)
47 KOG1859 Leucine-rich repeat pr 98.5 1.9E-09 4E-14 109.5 -7.7 178 24-212 102-291 (1096)
48 KOG2982 Uncharacterized conser 98.4 8.6E-08 1.9E-12 87.6 0.3 225 225-490 46-287 (418)
49 KOG2982 Uncharacterized conser 98.3 1.4E-07 3E-12 86.3 0.0 205 74-279 66-287 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.3 4.7E-07 1E-11 81.8 2.6 185 77-261 90-317 (388)
51 KOG1859 Leucine-rich repeat pr 98.2 2.4E-08 5.3E-13 101.6 -6.6 127 9-141 166-292 (1096)
52 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.4E-12 76.7 -2.4 80 56-139 55-134 (177)
53 PF12799 LRR_4: Leucine Rich r 98.1 3.1E-06 6.8E-11 55.3 3.0 36 435-471 2-37 (44)
54 PF12799 LRR_4: Leucine Rich r 98.0 4.6E-06 1E-10 54.5 3.1 38 458-496 1-38 (44)
55 PF13306 LRR_5: Leucine rich r 98.0 1.6E-05 3.5E-10 66.9 6.3 126 70-202 3-128 (129)
56 KOG4341 F-box protein containi 98.0 3.7E-07 8E-12 87.5 -4.3 132 175-306 293-437 (483)
57 KOG1644 U2-associated snRNP A' 98.0 1.3E-05 2.8E-10 69.6 5.3 123 35-162 22-150 (233)
58 KOG4341 F-box protein containi 97.9 6.6E-07 1.4E-11 85.8 -4.6 295 8-302 139-459 (483)
59 KOG1644 U2-associated snRNP A' 97.8 2.8E-05 6E-10 67.6 5.2 127 56-187 21-151 (233)
60 PF13306 LRR_5: Leucine rich r 97.7 5.7E-05 1.2E-09 63.5 6.0 124 96-226 5-128 (129)
61 KOG3665 ZYG-1-like serine/thre 97.7 1.6E-05 3.6E-10 85.1 3.1 195 8-207 61-282 (699)
62 PRK15386 type III secretion pr 97.6 0.00012 2.6E-09 72.3 7.1 74 245-331 50-124 (426)
63 PRK15386 type III secretion pr 97.6 0.00028 6.1E-09 69.8 9.5 54 31-89 51-104 (426)
64 KOG3665 ZYG-1-like serine/thre 97.6 5E-05 1.1E-09 81.5 4.1 150 7-159 122-282 (699)
65 KOG1947 Leucine rich repeat pr 97.3 6.1E-05 1.3E-09 79.3 -0.1 10 273-282 403-412 (482)
66 KOG2739 Leucine-rich acidic nu 97.2 0.00018 3.9E-09 65.5 2.2 86 30-116 41-129 (260)
67 KOG2123 Uncharacterized conser 97.0 4.4E-05 9.6E-10 69.6 -3.3 101 31-134 18-123 (388)
68 KOG2123 Uncharacterized conser 96.8 0.00011 2.4E-09 67.1 -2.6 82 55-141 20-101 (388)
69 KOG1947 Leucine rich repeat pr 96.7 0.00037 8.1E-09 73.3 -0.6 189 4-202 185-389 (482)
70 KOG2739 Leucine-rich acidic nu 96.6 0.0014 3E-08 59.8 2.4 40 174-213 63-104 (260)
71 PF00560 LRR_1: Leucine Rich R 96.0 0.0028 6.1E-08 34.3 0.9 12 460-471 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.8 0.0038 8.3E-08 33.7 0.9 20 436-456 2-21 (22)
73 KOG4308 LRR-containing protein 93.9 0.00069 1.5E-08 69.7 -9.9 109 56-165 89-217 (478)
74 KOG0473 Leucine-rich repeat pr 93.7 0.0029 6.2E-08 56.5 -5.0 84 409-495 41-124 (326)
75 PF13504 LRR_7: Leucine rich r 93.7 0.039 8.5E-07 27.6 1.2 13 8-20 2-14 (17)
76 KOG4308 LRR-containing protein 93.4 0.0012 2.6E-08 68.0 -9.2 186 81-286 89-305 (478)
77 smart00369 LRR_TYP Leucine-ric 93.1 0.1 2.3E-06 29.4 2.5 23 6-29 1-23 (26)
78 smart00370 LRR Leucine-rich re 93.1 0.1 2.3E-06 29.4 2.5 23 6-29 1-23 (26)
79 smart00369 LRR_TYP Leucine-ric 92.7 0.098 2.1E-06 29.5 2.0 16 458-473 2-17 (26)
80 smart00370 LRR Leucine-rich re 92.7 0.098 2.1E-06 29.5 2.0 16 458-473 2-17 (26)
81 KOG0473 Leucine-rich repeat pr 88.9 0.014 3E-07 52.3 -5.8 83 77-163 40-122 (326)
82 PF13516 LRR_6: Leucine Rich r 88.4 0.15 3.2E-06 28.1 0.1 13 80-92 3-15 (24)
83 KOG3864 Uncharacterized conser 86.5 0.12 2.6E-06 45.6 -1.5 33 81-113 103-135 (221)
84 TIGR00864 PCC polycystin catio 86.3 0.43 9.4E-06 58.1 2.4 37 464-500 1-37 (2740)
85 KOG3864 Uncharacterized conser 82.7 0.14 3E-06 45.2 -2.7 33 271-303 151-184 (221)
86 smart00365 LRR_SD22 Leucine-ri 79.9 1.5 3.2E-05 24.7 1.7 14 458-471 2-15 (26)
87 smart00364 LRR_BAC Leucine-ric 75.8 1.9 4.1E-05 24.2 1.3 13 459-471 3-15 (26)
88 KOG4242 Predicted myosin-I-bin 73.5 17 0.00037 36.8 8.1 61 80-140 215-280 (553)
89 KOG4242 Predicted myosin-I-bin 73.4 21 0.00046 36.3 8.7 105 54-164 165-280 (553)
90 smart00368 LRR_RI Leucine rich 70.0 2.8 6E-05 24.1 1.2 14 7-20 2-15 (28)
91 PF02439 Adeno_E3_CR2: Adenovi 69.5 12 0.00025 23.2 3.8 23 550-572 6-28 (38)
92 KOG3763 mRNA export factor TAP 62.8 5.1 0.00011 41.3 2.2 63 52-117 216-284 (585)
93 PF01102 Glycophorin_A: Glycop 62.5 7.2 0.00016 31.8 2.6 12 550-561 67-78 (122)
94 PF07204 Orthoreo_P10: Orthore 59.5 7.3 0.00016 29.5 2.0 32 547-578 38-69 (98)
95 PF15102 TMEM154: TMEM154 prot 55.3 4.4 9.5E-05 33.8 0.3 21 559-579 67-87 (146)
96 KOG3763 mRNA export factor TAP 46.4 10 0.00022 39.2 1.3 12 297-308 272-283 (585)
97 PF08374 Protocadherin: Protoc 43.7 9.9 0.00022 34.0 0.7 21 551-571 38-58 (221)
98 PF01102 Glycophorin_A: Glycop 43.2 50 0.0011 27.0 4.5 28 551-578 64-91 (122)
99 PF14575 EphA2_TM: Ephrin type 41.7 34 0.00074 25.2 3.1 19 555-573 5-23 (75)
100 TIGR00847 ccoS cytochrome oxid 41.5 57 0.0012 21.9 3.8 26 551-576 3-28 (51)
101 PF05337 CSF-1: Macrophage col 39.4 9.8 0.00021 35.4 0.0 25 555-579 230-254 (285)
102 PF03597 CcoS: Cytochrome oxid 36.7 58 0.0013 21.3 3.2 25 552-576 3-27 (45)
103 smart00367 LRR_CC Leucine-rich 36.3 26 0.00057 19.4 1.4 15 6-20 1-16 (26)
104 PF06667 PspB: Phage shock pro 31.5 84 0.0018 23.2 3.7 13 567-579 20-32 (75)
105 PTZ00370 STEVOR; Provisional 28.3 44 0.00096 31.5 2.3 19 555-573 258-276 (296)
106 TIGR01478 STEVOR variant surfa 27.8 45 0.00098 31.4 2.3 9 555-563 262-270 (295)
107 TIGR00864 PCC polycystin catio 26.8 47 0.001 41.8 2.7 33 13-46 1-33 (2740)
108 PRK14762 membrane protein; Pro 24.4 1.4E+02 0.003 16.5 3.0 18 553-570 5-22 (27)
109 TIGR02976 phageshock_pspB phag 23.7 1.4E+02 0.003 22.1 3.7 12 568-579 21-32 (75)
110 PHA02650 hypothetical protein; 22.9 1.2E+02 0.0027 22.3 3.2 20 559-578 56-75 (81)
111 PF12191 stn_TNFRSF12A: Tumour 22.1 30 0.00064 28.1 0.0 14 566-579 94-107 (129)
112 COG3197 FixS Uncharacterized p 22.1 97 0.0021 21.3 2.4 24 553-576 5-28 (58)
113 PHA02844 putative transmembran 21.3 2.3E+02 0.005 20.7 4.2 19 560-578 56-74 (75)
114 PF02009 Rifin_STEVOR: Rifin/s 20.9 89 0.0019 30.2 2.9 11 553-563 259-269 (299)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-59 Score=532.90 Aligned_cols=511 Identities=32% Similarity=0.499 Sum_probs=438.6
Q ss_pred cccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717 3 LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLV 82 (580)
Q Consensus 3 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 82 (580)
|..+++|+.|+|++|+++|.+|..++..+++|++|+|++|.+++......+++|++|++++|.+.+.+|..+. ++++|+
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~ 167 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIG-SFSSLK 167 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHh-cCCCCC
Confidence 5678999999999999998999998889999999999999998753335788999999999999988888775 799999
Q ss_pred EEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCc
Q 036717 83 YMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNN 162 (580)
Q Consensus 83 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (580)
+|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 99999999998999999999999999999999988888765 78999999999999999889999999999999999999
Q ss_pred cccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCC
Q 036717 163 HFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIS 242 (580)
Q Consensus 163 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 242 (580)
.+++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..+.
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 99988999999999999999999999988999999999999999999999988999999999999999999999887776
Q ss_pred cc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCC
Q 036717 243 TL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKL 321 (580)
Q Consensus 243 ~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 321 (580)
.+ .+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|.++..+++|+.|++++|.+.+.+|..+..+++|
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 55 88999999999999998899999999999999999999998999999888999999999999998999999999999
Q ss_pred CEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccch--hhcccccccccccchhhhh------ccccEE
Q 036717 322 GIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIR--DYYNSTVQLRLDESDLRWL------VKQVEV 393 (580)
Q Consensus 322 ~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~ 393 (580)
+.|++++|++++.+|..+...+ .+..+++.++.+...... .....+..+.+..+.+... ...++.
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~-------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~ 479 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLP-------LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN 479 (968)
T ss_pred CEEECcCCEeeeECChhHhcCC-------CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceE
Confidence 9999999999988888776643 344444444444332211 1122233333333322110 122344
Q ss_pred EEeecccccee-cc--cccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcc
Q 036717 394 NFMTKNRYESY-KG--VILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL 470 (580)
Q Consensus 394 ~~~~~~~~~~~-~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 470 (580)
..++.+++... +. ..+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|+++++|+.|||++|++
T Consensus 480 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred EECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 44555554321 11 2377899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccccCCCCCCCCCC
Q 036717 471 NGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPP 522 (580)
Q Consensus 471 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 522 (580)
++.+|..+..+++|++|++++|+++|.+|...++.++...++.||+.+||.+
T Consensus 560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.7e-54 Score=487.43 Aligned_cols=501 Identities=32% Similarity=0.478 Sum_probs=433.3
Q ss_pred CCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC----CCCCCccEEEccCCCCCccCChhHhhcCCCC
Q 036717 6 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT----GAQHGLLSLDISKNSFTGELPQNMGIVLQKL 81 (580)
Q Consensus 6 ~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L 81 (580)
..+++.|++++|.++|.++.. +..+++|+.|+|++|.+++. ++ ..+++|++|++++|.+++.+|.. .+++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L 142 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNL 142 (968)
T ss_pred CCcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCcc---ccCCC
Confidence 457999999999999888765 45999999999999999863 33 27889999999999999888863 47899
Q ss_pred cEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccC
Q 036717 82 VYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDN 161 (580)
Q Consensus 82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (580)
++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 999999999999999999999999999999999988888765 7999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccC
Q 036717 162 NHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241 (580)
Q Consensus 162 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 241 (580)
|.+.+..|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999998777
Q ss_pred Ccc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCC
Q 036717 242 STL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRK 320 (580)
Q Consensus 242 ~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 320 (580)
..+ .+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+++.+|..++.+++
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 665 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchh--hcccccccccccchhhh-------hcccc
Q 036717 321 LGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRD--YYNSTVQLRLDESDLRW-------LVKQV 391 (580)
Q Consensus 321 L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~ 391 (580)
|+.+++++|.+.+.+|..+... .+++.+++.++.+....+.. ....+..++++.+.+.. ....+
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~-------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGAC-------RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred CCEEECcCCEecccCCHHHhCC-------CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 9999999999999999887764 35566666666554322222 22334445555444332 22334
Q ss_pred EEEEeeccccceecc--cccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCc
Q 036717 392 EVNFMTKNRYESYKG--VILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNK 469 (580)
Q Consensus 392 ~~~~~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 469 (580)
+...+..+.+..... ...++|+.|++++|++++.+|..+.++++|+.|+|++|.+++.+|..++++++|++|+|++|+
T Consensus 455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred cEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 445555554432111 114689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhhcCCCCCCEEeccCCcccccCCCC-cccCCcCccccCCCCCCC
Q 036717 470 LNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK-EQFSTFDESSYRGNLHLC 519 (580)
Q Consensus 470 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc 519 (580)
+++.+|..+..+++|++|||++|++++.+|.. ..+..+...++.+|...+
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999999999999999999999965 344556666777777554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-42 Score=331.84 Aligned_cols=395 Identities=23% Similarity=0.263 Sum_probs=277.7
Q ss_pred cEEEccCCcccCCCCC---C-CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEc
Q 036717 35 EVLYLINNSFSGFQLT---G-AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDV 110 (580)
Q Consensus 35 ~~L~L~~n~l~~~~~~---~-~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 110 (580)
+.|+++++.+..+... + -...-+.||+++|.+. .+....|.++++|+.+++.+|.++ .+|...+...+|+.|+|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 4566666666554211 1 2234456777777776 454555557777777777777776 56665555566777777
Q ss_pred ccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCC
Q 036717 111 STNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSG 190 (580)
Q Consensus 111 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 190 (580)
.+|.|+ ++..+.+..++.|+.|||+.|.|+...-..|..-.++++|+|++|.|+..-.+.|.++.+|..|.|+.|+++.
T Consensus 133 ~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 133 RHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 777776 5555555667777777777777765555566666677777777777776666667777777777777777776
Q ss_pred CCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccC
Q 036717 191 HIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFR 269 (580)
Q Consensus 191 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~ 269 (580)
..+..|.++++|+.|+|..|++.-.-.-.|.++++|+.|.+..|.+.......| .+.++++|+|..|+++..-..++.+
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 666667777777777777777663334566777777777777777776666655 6777777777777777666666777
Q ss_pred CCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCC
Q 036717 270 GSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN 349 (580)
Q Consensus 270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~ 349 (580)
++.|+.|++++|.|....++.+..+++|+.|+|+.|.|+...++.|..+..|+.|++++|+++. + ...
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l----~e~------- 359 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-L----AEG------- 359 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-H----Hhh-------
Confidence 7777777777777776666666667777777777777776666677777777777777777641 1 100
Q ss_pred CCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCC--
Q 036717 350 ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIP-- 427 (580)
Q Consensus 350 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-- 427 (580)
.|. .+++|++|||++|.++..+.
T Consensus 360 -----------------------------------------------------af~--~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 360 -----------------------------------------------------AFV--GLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred -----------------------------------------------------HHH--HhhhhhhhcCcCCeEEEEEecc
Confidence 011 16788889999998876544
Q ss_pred -cccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717 428 -SEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 428 -~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 500 (580)
..|.+|++|+.|.|.+|++..+...+|.++..||+|||.+|.|..+-|.+|..+ .|+.|-+..-.+-|.|.-
T Consensus 385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence 457789999999999999987777889999999999999999988888899888 899888888888887743
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-41 Score=324.48 Aligned_cols=404 Identities=21% Similarity=0.229 Sum_probs=344.3
Q ss_pred CCCCCC-CccEEEccCCCCCccCChhH--hhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHh
Q 036717 49 LTGAQH-GLLSLDISKNSFTGELPQNM--GIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125 (580)
Q Consensus 49 ~~~~~~-~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 125 (580)
++..|+ +-+.||.+++.+. .+...- +.-.+.-+.|++++|++..+.+..|.++++|+.+++.+|.++ .||... .
T Consensus 46 cpa~c~c~~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~ 122 (873)
T KOG4194|consen 46 CPATCPCNTRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-H 122 (873)
T ss_pred CCCcCCCCceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-c
Confidence 444444 4467899998775 321111 112346678999999999999999999999999999999998 899743 4
Q ss_pred CCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEE
Q 036717 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQIL 205 (580)
Q Consensus 126 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 205 (580)
...+|+.|+|.+|.|+....+.++.++.|+.|||+.|.|+......|..-.++++|+|++|+|+......|..+.+|..|
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 45679999999999998888899999999999999999997766778888999999999999998888899999999999
Q ss_pred EcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCc
Q 036717 206 SMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS 284 (580)
Q Consensus 206 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 284 (580)
.|+.|+++...+..|..++.|+.|+|..|.|.......| .+++|+.|.+..|.+.......|..+.++++|+|+.|+++
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 999999998888899999999999999999987644445 8999999999999999888899999999999999999999
Q ss_pred ccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCC
Q 036717 285 GRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGN 364 (580)
Q Consensus 285 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 364 (580)
..-..|+.+++.|+.|+++.|.|..+-+..+..+++|++||+++|+++..-+..+..
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~----------------------- 339 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV----------------------- 339 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH-----------------------
Confidence 888889999999999999999999888999999999999999999998433333322
Q ss_pred ccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccC
Q 036717 365 VDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYN 444 (580)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 444 (580)
+..|++|.|++|.+...-...|..+++|++|||++|
T Consensus 340 --------------------------------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 340 --------------------------------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred --------------------------------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 678999999999999888889999999999999999
Q ss_pred cceecccc---cccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccccCCCCCCCCC
Q 036717 445 FLSGSIPE---SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGP 521 (580)
Q Consensus 445 ~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 521 (580)
.++..+.+ .|.+|++|+.|+|.+|+|..+...+|.++++|+.|||.+|.+...-|.+-.-..+++.-+..-..+|++
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC 455 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence 99987764 588999999999999999977778999999999999999999876665422223444444445567765
Q ss_pred C
Q 036717 522 P 522 (580)
Q Consensus 522 ~ 522 (580)
.
T Consensus 456 q 456 (873)
T KOG4194|consen 456 Q 456 (873)
T ss_pred c
Confidence 4
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.2e-40 Score=305.93 Aligned_cols=406 Identities=27% Similarity=0.434 Sum_probs=227.0
Q ss_pred ccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC-CCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717 4 RHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT-GAQHGLLSLDISKNSFTGELPQNMGIVLQKLV 82 (580)
Q Consensus 4 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 82 (580)
.++..+++|++++|+++ .+|+++. .+.+++.++.++|+++..+.. ....+|+.++.++|.+. ++|++++ .+-.++
T Consensus 65 ~nL~~l~vl~~~~n~l~-~lp~aig-~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~-~~~~l~ 140 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS-QLPAAIG-ELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIG-RLLDLE 140 (565)
T ss_pred hcccceeEEEeccchhh-hCCHHHH-HHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHH-HHhhhh
Confidence 45666777777777777 6666654 566777777777766654221 24455556666666555 5555554 344555
Q ss_pred EEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCc
Q 036717 83 YMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNN 162 (580)
Q Consensus 83 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (580)
.++..+|+++ ..|..+..+.+|..+++.+|.+. ..|+.... ++.|++||...|-++ .+|+.++.+.+|.-|++..|
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence 5555555555 34555555555555555555555 44444332 555555555555443 44455555555555555555
Q ss_pred cccccccccccCCCCCCEEEcccCCCCCCCchhhh-cCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccC
Q 036717 163 HFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG-NFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241 (580)
Q Consensus 163 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 241 (580)
++. ..| .|.++..|++++++.|++. .+|.... .++++..||+..|+++ ..|+.+.-+.+|..||+++|.+++.+.
T Consensus 217 ki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 217 KIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred ccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCc
Confidence 554 333 3444444444444444444 2333222 4444444444444444 444444444444444554444444444
Q ss_pred CccCCCCCcEEEeeCC----------------------------------------------------------------
Q 036717 242 STLNLSSVEHLYLQNN---------------------------------------------------------------- 257 (580)
Q Consensus 242 ~~~~~~~L~~L~l~~n---------------------------------------------------------------- 257 (580)
...++ .|+.|-+.+|
T Consensus 293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence 43333 4444444444
Q ss_pred -cCcccCChhccCCC---CccEEeCCCCcCcccCchhhccCcCcce-eecccccccccCcccccCCCCCCEEEeeCCeec
Q 036717 258 -ALGGSIPNTFFRGS---ALETLDLRDNNFSGRIPHQINEHSNLRA-LLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLY 332 (580)
Q Consensus 258 -~l~~~~~~~~~~~~---~L~~L~l~~n~l~~~~~~~~~~~~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 332 (580)
+++ .+|....... -...++++.|++. ++|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|++++|.+.
T Consensus 372 ~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln 448 (565)
T KOG0472|consen 372 KQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN 448 (565)
T ss_pred cccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh
Confidence 333 2222111111 1334444444444 34443333333322 22222222 345555566666666666666553
Q ss_pred CccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccc
Q 036717 333 GSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHM 412 (580)
Q Consensus 333 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 412 (580)
.+|..++. +..|
T Consensus 449 -~LP~e~~~-------------------------------------------------------------------lv~L 460 (565)
T KOG0472|consen 449 -DLPEEMGS-------------------------------------------------------------------LVRL 460 (565)
T ss_pred -hcchhhhh-------------------------------------------------------------------hhhh
Confidence 44443332 4567
Q ss_pred cEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCC
Q 036717 413 AGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 492 (580)
Q Consensus 413 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 492 (580)
+.||+|.|++. .+|..+-.+..++.+-.++|++....|..+.++.+|.+|||.+|.+. .+|..+++|++|++|++.+|
T Consensus 461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCC
Confidence 88888888887 77777777777777777778888767777888888888888888887 67888888888888888888
Q ss_pred ccc
Q 036717 493 NLS 495 (580)
Q Consensus 493 ~l~ 495 (580)
++.
T Consensus 539 pfr 541 (565)
T KOG0472|consen 539 PFR 541 (565)
T ss_pred ccC
Confidence 887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=295.86 Aligned_cols=452 Identities=26% Similarity=0.358 Sum_probs=291.5
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC-CCCCCccEEEccCCCCCccCChhHhhcCCCCcEEE
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT-GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMN 85 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 85 (580)
..++.+++++|.+. .+.... .++..|.+|++.+|++...+.. ..+..++.++.++|++. ++|+.++ ...+++.++
T Consensus 45 v~l~~lils~N~l~-~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~-s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIG-SLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchh-hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHh-hhhhhhhhh
Confidence 34556666666665 343333 3566666666666666554211 24455566666666666 6666665 456666666
Q ss_pred cccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccc
Q 036717 86 ISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS 165 (580)
Q Consensus 86 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (580)
.++|.+. .+|+.++.+-.|+.++..+|++. ..|.++ ..+.++..+++.+|++.... +..-+++.|++|+...|-+.
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~-~~~i~m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALP-ENHIAMKRLKHLDCNSNLLE 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhCC-HHHHHHHHHHhcccchhhhh
Confidence 6666666 45566666666666666666666 555554 45666666666666666333 33333666666666666665
Q ss_pred ccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhc-cCCCCCcEEEccCCcCccccCCcc
Q 036717 166 GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQF-NDLLDLEILNISENNLSGSMISTL 244 (580)
Q Consensus 166 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~ 244 (580)
.+|..++.+.+|.-|++..|++. ..| .|.++..|+++.++.|++. .+|... ..++.+.+||++.|+++..+....
T Consensus 197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHH
Confidence 56666666677777777777666 445 4666666777777777666 334333 366777777777777776666665
Q ss_pred CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcc-------------------------------------c-
Q 036717 245 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG-------------------------------------R- 286 (580)
Q Consensus 245 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-------------------------------------~- 286 (580)
.+.+|++||+++|.++ ..|..++++ +|+.|.+.+|.+.. .
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 6667777777777776 456666666 67777777776520 0
Q ss_pred Cchhh---ccCcCcceeecccccccccCcccccCC--CCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCC
Q 036717 287 IPHQI---NEHSNLRALLLRANYLQGPIPHQLCRL--RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361 (580)
Q Consensus 287 ~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (580)
.+..+ ....+.+.|+++.-+++....+.|..- .-...++++.|++. ++|..+....-.. ..
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv------T~------- 416 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV------TD------- 416 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH------HH-------
Confidence 00000 112345666666666663333333221 12678999999996 7887665432100 00
Q ss_pred CCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEec
Q 036717 362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNL 441 (580)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 441 (580)
+.++.+.+.|.+... ..+++|+.|+|++|-+. .+|.+++.+..|+.||+
T Consensus 417 ---------------l~lsnn~isfv~~~l---------------~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Lnl 465 (565)
T KOG0472|consen 417 ---------------LVLSNNKISFVPLEL---------------SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNL 465 (565)
T ss_pred ---------------HHhhcCccccchHHH---------------Hhhhcceeeecccchhh-hcchhhhhhhhhheecc
Confidence 001111111111100 22788999999999998 88999999999999999
Q ss_pred ccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccccCCCCCC
Q 036717 442 SYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHL 518 (580)
Q Consensus 442 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 518 (580)
|+|+|. .+|+....+..||.+-.++|++....|+.+.+|.+|.+|||.+|.+....|.-.....+......|||+-
T Consensus 466 S~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 466 SFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 999998 8999999999999999999999988888899999999999999999966555566677777777777754
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=2.6e-36 Score=294.29 Aligned_cols=369 Identities=25% Similarity=0.390 Sum_probs=310.9
Q ss_pred CCCccEEEccCCCCC-ccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc
Q 036717 53 QHGLLSLDISKNSFT-GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI 131 (580)
Q Consensus 53 ~~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 131 (580)
++-.+-+|+++|.++ +..|..+- .+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~-qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVE-QMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHH-HhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence 344566778888887 46777774 7899999999999988 78999999999999999999988 565554 7889999
Q ss_pred EEEcccccCCC-cCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccC
Q 036717 132 WLDLSNNNFDG-QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKN 210 (580)
Q Consensus 132 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 210 (580)
.+++..|++.. .+|+.+..+..|..|||++|++. ..|..+..-+++-.|+||+|+|..+....|.+++.|-.|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 99999998863 46778889999999999999998 67888888899999999999998655567788999999999999
Q ss_pred cCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCc-ccCChhccCCCCccEEeCCCCcCcccCc
Q 036717 211 LLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALG-GSIPNTFFRGSALETLDLRDNNFSGRIP 288 (580)
Q Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 288 (580)
++. .+|.....+..|++|+|++|.+........ .+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 997 677788999999999999998875444433 6788888999887543 357888999999999999999998 889
Q ss_pred hhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccch
Q 036717 289 HQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIR 368 (580)
Q Consensus 289 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 368 (580)
+.+..+++|+.|+|++|+|+ .+.-......+|+.|++|.|+++ .+|+++..
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------------------------- 289 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------------------------- 289 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------
Confidence 99999999999999999998 44444555678999999999997 78887765
Q ss_pred hhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcce-eeCCcccccccCCCeEecccCcce
Q 036717 369 DYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT-GNIPSEIGDLQNIHGLNLSYNFLS 447 (580)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~ 447 (580)
++.|+.|.+.+|+++ +-+|..++.+.+|+++..++|.+.
T Consensus 290 ----------------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 290 ----------------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred ----------------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 667888888899876 358888999999999999999988
Q ss_pred ecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCC
Q 036717 448 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP 499 (580)
Q Consensus 448 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 499 (580)
..|+.+..+..|+.|.|++|++. .+|+.+.-++.|++||+..|+=---.|
T Consensus 330 -lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 330 -LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 89999999999999999999988 689999999999999999997554444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=4.8e-35 Score=285.53 Aligned_cols=370 Identities=25% Similarity=0.374 Sum_probs=323.3
Q ss_pred CCCCcEEEcccCcCc-cccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717 78 LQKLVYMNISKNSFE-GNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL 156 (580)
Q Consensus 78 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 156 (580)
+|-.+-.|+++|.++ +..|.....+++++-|.|....+. .+|..+ +.|.+|++|.+++|++. .+...++.++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 667888999999999 579999999999999999999998 899986 89999999999999997 45577889999999
Q ss_pred EeccCccccc-cccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCc
Q 036717 157 LYLDNNHFSG-KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235 (580)
Q Consensus 157 L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 235 (580)
+.+..|++.. -+|..+..+..|+.||||+|++. ..|..+..-+++-.|+|++|+|..+....|.++..|-.|||++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 9999998863 46778889999999999999998 778889999999999999999986666677899999999999999
Q ss_pred CccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCc-ccCchhhccCcCcceeecccccccccCccc
Q 036717 236 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS-GRIPHQINEHSNLRALLLRANYLQGPIPHQ 314 (580)
Q Consensus 236 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 314 (580)
+...+|..-.+..|++|.|++|.+..---..+..+++|++|.+++.+-+ .-+|..+..+.+|..++++.|.+. .+|++
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 9999998889999999999999876443344556788999999987644 458889999999999999999998 89999
Q ss_pred ccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEE
Q 036717 315 LCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVN 394 (580)
Q Consensus 315 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (580)
+..+++|+.|++|+|+++. +..+...
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~~~~~~----------------------------------------------------- 266 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LNMTEGE----------------------------------------------------- 266 (1255)
T ss_pred HhhhhhhheeccCcCceee-eeccHHH-----------------------------------------------------
Confidence 9999999999999999972 2211111
Q ss_pred EeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCccee-cccccccCcccCCEEECCCCccccc
Q 036717 395 FMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG-SIPESFSNLKMIESLDLSHNKLNGQ 473 (580)
Q Consensus 395 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~ 473 (580)
-.+|++|+||.|+++ .+|+++..++.|+.|++.+|+++- -+|..++.+.+|+.+..++|.+. .
T Consensus 267 --------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-l 330 (1255)
T KOG0444|consen 267 --------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-L 330 (1255)
T ss_pred --------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-c
Confidence 247889999999999 899999999999999999999873 48999999999999999999998 8
Q ss_pred CchhhcCCCCCCEEeccCCcccccCCCC-cccCCcCccccCCCCCCCCCCC
Q 036717 474 IPPQLTELHSLSKFDVSYNNLSGPIPDK-EQFSTFDESSYRGNLHLCGPPI 523 (580)
Q Consensus 474 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~ 523 (580)
.|+.+..+..|+.|.|+.|.+. +.|.+ +.+..+...+...||.+.-||-
T Consensus 331 VPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 9999999999999999999998 56665 4456677788899999887764
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=8.9e-34 Score=288.98 Aligned_cols=452 Identities=27% Similarity=0.340 Sum_probs=290.7
Q ss_pred CCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCC-CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717 9 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTG-AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS 87 (580)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 87 (580)
++.|+++.|-+- ..|-.+.++.-+|+.|++++|.+..++.+- .+.+|+.|+++.|.+. ..|.... ++.+|++++|.
T Consensus 23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~-~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCS-NMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhh-hhhcchhheec
Confidence 566677777655 445555556666777777777777664442 5667777777777776 6665443 67777777777
Q ss_pred cCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccc
Q 036717 88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK 167 (580)
Q Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (580)
+|.+. ..|..+..+++|++|+++.|.+. .+|..+ ..+..+..+..++|.-. ..++... ++.+++..|.+.+.
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLGGS 171 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcccc
Confidence 77776 66777777777777777777776 666654 56677777777777211 1122222 67777777777777
Q ss_pred ccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCC
Q 036717 168 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247 (580)
Q Consensus 168 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 247 (580)
++..+..+.. .|+|++|.+. . ..+..+.+|+.|..+.|++.... -.-++++.|+.+.|.++... ..+...
T Consensus 172 ~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~-~~p~p~ 241 (1081)
T KOG0618|consen 172 FLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLD-VHPVPL 241 (1081)
T ss_pred hhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeec-cccccc
Confidence 6666655555 6888888876 2 33567778888888888776321 23468899999999988333 333567
Q ss_pred CCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEee
Q 036717 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS 327 (580)
Q Consensus 248 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 327 (580)
+|++++++.|+++ .+|+++..+.+|+.++..+|+++ .+|..+...++|+.|.+..|.+. .+|.....++.|++||+.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 8999999999998 56799999999999999999996 78888888999999999999998 677778889999999999
Q ss_pred CCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchh--hccccccccc-----ccchhhhh--ccccEEEEeec
Q 036717 328 HNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRD--YYNSTVQLRL-----DESDLRWL--VKQVEVNFMTK 398 (580)
Q Consensus 328 ~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~ 398 (580)
.|++. ..|+.+... .+.++..+..+...+....... -...+..+.+ .+..+.-+ ...+++..++.
T Consensus 319 ~N~L~-~lp~~~l~v-----~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAV-----LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred hcccc-ccchHHHhh-----hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 99996 666633221 1111222221111111111000 0000111111 11111111 22344555556
Q ss_pred cccceecccc---cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCc
Q 036717 399 NRYESYKGVI---LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 475 (580)
Q Consensus 399 ~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 475 (580)
|+++.|+... +..|+.|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++...-
T Consensus 393 NrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 393 NRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred cccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence 6666555432 344556666666666 55666666666666666666666 455 55666666666666666654322
Q ss_pred hhhcCCCCCCEEeccCCc
Q 036717 476 PQLTELHSLSKFDVSYNN 493 (580)
Q Consensus 476 ~~l~~l~~L~~L~Ls~N~ 493 (580)
..-...+.|++||+++|.
T Consensus 470 ~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 470 PEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhCCCcccceeeccCCc
Confidence 222222566666666665
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.6e-33 Score=285.66 Aligned_cols=425 Identities=30% Similarity=0.417 Sum_probs=282.9
Q ss_pred cccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC-CCCCCccEEEccCCCCCccCChhHhhcCCCC
Q 036717 3 LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT-GAQHGLLSLDISKNSFTGELPQNMGIVLQKL 81 (580)
Q Consensus 3 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L 81 (580)
.+++-+|+.||+++|.+. .+|..+- .+.+|+.|+++.|.+...+.. ..+++|+++.|.+|.+. ..|..+. .+.+|
T Consensus 41 ~~~~v~L~~l~lsnn~~~-~fp~~it-~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl 116 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQIS-SFPIQIT-LLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNL 116 (1081)
T ss_pred hhheeeeEEeeccccccc-cCCchhh-hHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHH-hhhcc
Confidence 345556999999999998 8888765 789999999999999876533 37789999999999988 8888875 78999
Q ss_pred cEEEcccCcCccccchhhhcCCCCCEEEcccC-------------------cCccccchHHHhCCCCCcEEEcccccCCC
Q 036717 82 VYMNISKNSFEGNIPSSIAKMQGLRFLDVSTN-------------------NFAGELSQSLVTNCFSLIWLDLSNNNFDG 142 (580)
Q Consensus 82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-------------------~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 142 (580)
++|++++|.+. .+|..+..+..++.+..++| .+.+.++.+. ..+.. .|+|.+|.+..
T Consensus 117 ~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~~ 192 (1081)
T KOG0618|consen 117 QYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEMEV 192 (1081)
T ss_pred cccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch-hhhhe--eeecccchhhh
Confidence 99999999987 66766666555555555555 3333333332 22223 48888887762
Q ss_pred cCCccccCCCC--------------------CCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCC
Q 036717 143 QIFPNYMNLTQ--------------------LQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYL 202 (580)
Q Consensus 143 ~~~~~~~~l~~--------------------L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 202 (580)
..+..+.+ |+.|+.+.|.+....+. ..-.+|+.++++.|+++ .+|+|+..+.+|
T Consensus 193 ---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 193 ---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANL 266 (1081)
T ss_pred ---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccc
Confidence 12233333 34444444444322111 12345677777777776 445777777777
Q ss_pred CEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccC-CC-CccEEeCCC
Q 036717 203 QILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFR-GS-ALETLDLRD 280 (580)
Q Consensus 203 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~-~L~~L~l~~ 280 (580)
+.++..+|+++ .+|..+...++|+.+.+.+|.+...++.....++|++|+|..|.+. ..|+.+.. .. .|+.|+.+.
T Consensus 267 e~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 267 EALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred eEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhh
Confidence 77777777774 5566666666777777777777766666556777777777777776 34433222 21 245555555
Q ss_pred CcCcccCch-hhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhh-hhcccccCCCCccccccC
Q 036717 281 NNFSGRIPH-QINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACIT-NSLFWKVGNESLYQLDEE 358 (580)
Q Consensus 281 n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~~~~~~~~~~~~l~~~ 358 (580)
|++. ..|. .=...+.|+.|++.+|.++...-..+.+.++|+.|++++|++. ++|+... ++ +.++.+.++
T Consensus 345 n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kl-------e~LeeL~LS 415 (1081)
T KOG0618|consen 345 NKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKL-------EELEELNLS 415 (1081)
T ss_pred cccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhch-------HHhHHHhcc
Confidence 5554 2221 1122456777888888888777677777888888888888885 5555332 22 234444444
Q ss_pred CCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCe
Q 036717 359 GADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHG 438 (580)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 438 (580)
|+.+..++. .. ..++.|++|...+|++. ..| ++..+++|+.
T Consensus 416 GNkL~~Lp~----------------------tv---------------a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 416 GNKLTTLPD----------------------TV---------------ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred cchhhhhhH----------------------HH---------------HhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 444333221 00 12678999999999998 667 7999999999
Q ss_pred EecccCcceec-ccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCC
Q 036717 439 LNLSYNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 492 (580)
Q Consensus 439 L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 492 (580)
+|+|.|+++.. +|..... ++|++|||++|.=...-...|..+.++...++.-|
T Consensus 457 lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred EecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99999999854 3443332 89999999999844455677888888888888877
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=2.9e-29 Score=233.07 Aligned_cols=406 Identities=20% Similarity=0.202 Sum_probs=264.7
Q ss_pred CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEccc-CcCccccchHHHhCCCCC
Q 036717 52 AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVST-NNFAGELSQSLVTNCFSL 130 (580)
Q Consensus 52 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L 130 (580)
-.+.-+.++|..|+|+ .||...|+.+++||.|||++|.|+.+.|++|..+++|..|-+.+ |+|+ .+|...|.++..+
T Consensus 65 LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL 142 (498)
T ss_pred CCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence 3457788999999999 89999999999999999999999999999999999988887766 8888 8999999999999
Q ss_pred cEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCC------------CCCchhhhc
Q 036717 131 IWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS------------GHIPSWMGN 198 (580)
Q Consensus 131 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------------~~~~~~~~~ 198 (580)
+.|.+.-|++.-...+.|..++++..|.+.+|.+..+-...|..+..++.+.+..|.+. ...|..+++
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 99999999998777788999999999999999998555558889999999999888732 112223333
Q ss_pred CCCCCEEEcccCcCCCcCchhccCCCCCcEE---EccCCcCccccCC-cc-CCCCCcEEEeeCCcCcccCChhccCCCCc
Q 036717 199 FSYLQILSMSKNLLEGNIPVQFNDLLDLEIL---NISENNLSGSMIS-TL-NLSSVEHLYLQNNALGGSIPNTFFRGSAL 273 (580)
Q Consensus 199 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L---~l~~n~l~~~~~~-~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 273 (580)
........+.+.++..+.+..|... ++.+ -.+.+......+. .+ .+++|++|++++|+++++-+.+|.+...+
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 3334444444444443333333221 1111 1122222222222 22 78888888888888888888888888888
Q ss_pred cEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccC-hhhhhhccc--ccCC-
Q 036717 274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP-ACITNSLFW--KVGN- 349 (580)
Q Consensus 274 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~~--~~~~- 349 (580)
++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+..|..|.+-.|++...-- .++..+.-. ..++
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 888888888876666677888888888888888888888888888888888888887743211 122211100 0000
Q ss_pred -----CCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccccc-EEEccCCcce
Q 036717 350 -----ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA-GLDLSSNELT 423 (580)
Q Consensus 350 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~ 423 (580)
..+.++.+....+++.... .. .+........ -...++-+. +...|+..++
T Consensus 381 ~Cq~p~~~~~~~~~dv~~~~~~c~-~~-------------------ee~~~~~s~~----cP~~c~c~~tVvRcSnk~lk 436 (498)
T KOG4237|consen 381 RCQSPGFVRQIPISDVAFGDFRCG-GP-------------------EELGCLTSSP----CPPPCTCLDTVVRCSNKLLK 436 (498)
T ss_pred CCCCCchhccccchhccccccccC-Cc-------------------cccCCCCCCC----CCCCcchhhhhHhhcccchh
Confidence 0011111111111110000 00 0000000000 000011121 2334444444
Q ss_pred eeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCC
Q 036717 424 GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 492 (580)
Q Consensus 424 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 492 (580)
.+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+++..--..|.+++.|.+|-|++|
T Consensus 437 -~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 437 -LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4443332 34567778888887 56655 56677 7888888887666677788888888888776
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=3.1e-24 Score=244.07 Aligned_cols=347 Identities=18% Similarity=0.212 Sum_probs=181.0
Q ss_pred CchHHhhCCCCCcEEEccCCcccCC-----CCCC----CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCcc
Q 036717 23 FPTWLLENNTKLEVLYLINNSFSGF-----QLTG----AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEG 93 (580)
Q Consensus 23 ~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 93 (580)
+....|.++++|+.|.+..+..... ..+. ..++|+.|++.++.+. .+|..+ .+.+|+.|++++|++.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence 4455566777777777765532210 0111 2234666666666655 555554 2456666666666655
Q ss_pred ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccccccccc
Q 036717 94 NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLL 173 (580)
Q Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (580)
.++..+..+++|+.|+|+++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 3455555666666666665543334553 3455666666666655444555555566666666666553333444433
Q ss_pred CCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEE
Q 036717 174 RSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLY 253 (580)
Q Consensus 174 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 253 (580)
++++|+.|++++|.....+|.. .++|+.|++++|.+. .+|..+ .+++|+.|.+.++.......
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~------------ 764 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWE------------ 764 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccc------------
Confidence 4555666666555433333321 234555555555544 333322 34444444444322111000
Q ss_pred eeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecC
Q 036717 254 LQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYG 333 (580)
Q Consensus 254 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 333 (580)
.+....+..+...++|+.|++++|...+.+|.+++.+++|+.|++++|..-+.+|... .+++|+.|++++|....
T Consensus 765 ----~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 765 ----RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred ----cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 0000111112223456666666665555566666666666666666654333445443 45666666666654322
Q ss_pred ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccccc
Q 036717 334 SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA 413 (580)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 413 (580)
.+|.. ..+++
T Consensus 840 ~~p~~----------------------------------------------------------------------~~nL~ 849 (1153)
T PLN03210 840 TFPDI----------------------------------------------------------------------STNIS 849 (1153)
T ss_pred ccccc----------------------------------------------------------------------ccccC
Confidence 22210 23556
Q ss_pred EEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCc
Q 036717 414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNK 469 (580)
Q Consensus 414 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 469 (580)
.|+|++|.++ .+|..+..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 850 ~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 850 DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 6666666666 556666666666666666643333455556666666666666664
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=3.1e-24 Score=244.12 Aligned_cols=342 Identities=20% Similarity=0.244 Sum_probs=249.8
Q ss_pred CChhHhhcCCCCcEEEcccCc------CccccchhhhcCC-CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCC
Q 036717 70 LPQNMGIVLQKLVYMNISKNS------FEGNIPSSIAKMQ-GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDG 142 (580)
Q Consensus 70 ~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 142 (580)
+....|..+++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|+.|++.+|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence 345556678888888886553 2334566676664 5888888888776 677654 4678888888888876
Q ss_pred cCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccC
Q 036717 143 QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFND 222 (580)
Q Consensus 143 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 222 (580)
.++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ .
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 4566677888888888887654445553 6778888888888877666778888888888888888875444566544 6
Q ss_pred CCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCc-------ccCchhhccCc
Q 036717 223 LLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS-------GRIPHQINEHS 295 (580)
Q Consensus 223 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~~~~~ 295 (580)
+++|+.|++++|......+. ...+|+.|++++|.+. .+|..+ .+++|+.|++.++... ...+......+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 78888888888765443332 2467888888888876 556544 4677888887764321 11222233456
Q ss_pred CcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhccccc
Q 036717 296 NLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTV 375 (580)
Q Consensus 296 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 375 (580)
+|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------ 822 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------ 822 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence 88888998887777788888888889999988876544555321
Q ss_pred ccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceeccccccc
Q 036717 376 QLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFS 455 (580)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 455 (580)
.+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++.
T Consensus 823 --------------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~ 866 (1153)
T PLN03210 823 --------------------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE 866 (1153)
T ss_pred --------------------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh
Confidence 1678999999998765556553 368999999999998 6899999
Q ss_pred CcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCc
Q 036717 456 NLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNN 493 (580)
Q Consensus 456 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 493 (580)
.+++|+.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99999999999955444678888899999999999885
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=7e-27 Score=217.30 Aligned_cols=401 Identities=19% Similarity=0.236 Sum_probs=278.5
Q ss_pred cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717 57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS 136 (580)
Q Consensus 57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 136 (580)
..+|-++-.++ ++|..+ .+.-..++|..|+|+.+.|.+|+.+++|+.|||++|+|+ .|.+..|.++..|..|-+.
T Consensus 49 ~~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 49 GIVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred ceEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhh
Confidence 45677777777 888766 467889999999999888899999999999999999999 7777788999988777665
Q ss_pred c-ccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCC--
Q 036717 137 N-NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE-- 213 (580)
Q Consensus 137 ~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 213 (580)
+ |+|+......|.++..++.|.+..|++.-...+.|..++++..|.+..|.+...--..|..+..++.+.+..|.+.
T Consensus 124 g~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 124 GNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred cCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 5 9999777778999999999999999998788889999999999999999988444448888999999999888732
Q ss_pred ----------CcCchhccCCCCCcEEEccCCcCccccCCccCCC--CCcEEEeeCCcCcccCC-hhccCCCCccEEeCCC
Q 036717 214 ----------GNIPVQFNDLLDLEILNISENNLSGSMISTLNLS--SVEHLYLQNNALGGSIP-NTFFRGSALETLDLRD 280 (580)
Q Consensus 214 ----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~ 280 (580)
...|..+++.....-..+.+.++..+....+.+. .+..=..+.+...++.| ..|..+++|++|++++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 1223334444445555566666665555544222 33222233343444444 4688999999999999
Q ss_pred CcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCC
Q 036717 281 NNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGA 360 (580)
Q Consensus 281 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 360 (580)
|+++++-+.+|.+...++.|.|..|++...-...|.++..|+.|++.+|+|+...|..|....+ +..+.+-.+
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~-------l~~l~l~~N 356 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS-------LSTLNLLSN 356 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce-------eeeeehccC
Confidence 9999999999999999999999999999777788999999999999999999888877765432 222222222
Q ss_pred CCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcce---eeCCcccc------
Q 036717 361 DVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT---GNIPSEIG------ 431 (580)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~------ 431 (580)
.+-- ...+.|+...++..-...+ -+-.....++.++++...+. ...|++.+
T Consensus 357 p~~C----------------nC~l~wl~~Wlr~~~~~~~----~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~ 416 (498)
T KOG4237|consen 357 PFNC----------------NCRLAWLGEWLRKKSVVGN----PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSP 416 (498)
T ss_pred cccC----------------ccchHHHHHHHhhCCCCCC----CCCCCCchhccccchhccccccccCCccccCCCCCCC
Confidence 1110 0112222221111100000 00011234555555554433 12233221
Q ss_pred ---cccCCCe-EecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccc
Q 036717 432 ---DLQNIHG-LNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSG 496 (580)
Q Consensus 432 ---~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 496 (580)
.++-+.+ .--|+..++ .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+++-
T Consensus 417 cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 417 CPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS 478 (498)
T ss_pred CCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence 2333433 334444444 6666554 35678999999999 67776 56788 99999999874
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=4.6e-22 Score=210.29 Aligned_cols=194 Identities=27% Similarity=0.330 Sum_probs=94.8
Q ss_pred CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEc
Q 036717 104 GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDI 183 (580)
Q Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 183 (580)
.-..|+++.+.++ .+|..+. ++|+.|++++|+++. +|. .+++|++|++++|+++. +|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 3455666666665 5555432 356666666666653 222 23556666666666652 3321 245566666
Q ss_pred ccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccC
Q 036717 184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSI 263 (580)
Q Consensus 184 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 263 (580)
++|.+. .+|..+ ++|+.|++++|+++ .+|. ..++|+.|++++|.+++.+. ...+|+.|++++|.+++ +
T Consensus 270 s~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 270 FSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-L 337 (788)
T ss_pred cCCchh-hhhhch---hhcCEEECcCCccc-cccc---cccccceeECCCCccccCCC---CcccccccccccCcccc-c
Confidence 666555 233221 34555666666555 2332 12455566666665554332 12345555555555542 3
Q ss_pred ChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeec
Q 036717 264 PNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLY 332 (580)
Q Consensus 264 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 332 (580)
|.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|.+++ +|.. ..+|+.|++++|.++
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred ccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence 321 134555555555555 23321 1345555555555542 3322 124555555555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=9.2e-22 Score=208.01 Aligned_cols=265 Identities=24% Similarity=0.300 Sum_probs=157.6
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEc
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNI 86 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 86 (580)
..-..|+++++.++ .+|..+. ++|+.|++++|+++.+ +..+++|++|++++|+++ .+|. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L--P~lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL--PALPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC--CCCCCCCcEEEecCCccC-cccC----cccccceeec
Confidence 34567888888887 7777553 4688888888888864 345677888888888877 5664 2457778888
Q ss_pred ccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccc
Q 036717 87 SKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSG 166 (580)
Q Consensus 87 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (580)
++|.++ .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|.+++ +|.. ..+|+.|++++|.+++
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence 888776 34432 256777788888776 5554 23567777777777764 2321 2356667777777763
Q ss_pred cccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCC
Q 036717 167 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNL 246 (580)
Q Consensus 167 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 246 (580)
+|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.+++.+.. .
T Consensus 337 -LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l---~ 401 (788)
T PRK15387 337 -LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL---P 401 (788)
T ss_pred -cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc---c
Confidence 3431 2456777777777663 3432 2356666666666652 3432 23456666666665543321 2
Q ss_pred CCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccc
Q 036717 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQL 315 (580)
Q Consensus 247 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 315 (580)
++|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 402 s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 345555555555552 3322 124455555555554 445555555555555555555554444433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=2.2e-20 Score=198.96 Aligned_cols=246 Identities=22% Similarity=0.335 Sum_probs=121.0
Q ss_pred CCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717 8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS 87 (580)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 87 (580)
+.++|+++++.++ .+|..+ .+.|+.|+|++|+++.++ .....+|++|++++|.++ .+|..+. +.|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP-~~l~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLP-ENLQGNIKTLYANSNQLT-SIPATLP---DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCC-hhhccCCCEEECCCCccc-cCChhhh---ccccEEECc
Confidence 4456666666666 555433 235666666666666542 123345666666666665 4555432 356666666
Q ss_pred cCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccc
Q 036717 88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK 167 (580)
Q Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (580)
+|.++ .+|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|+++. +|..+. ++|+.|++++|.++.
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence 66665 3444443 35666666666655 455432 1356666666665553 232221 345555555555552
Q ss_pred ccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCC
Q 036717 168 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247 (580)
Q Consensus 168 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 247 (580)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++..+... ..
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l--~~ 388 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENL--PA 388 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhH--HH
Confidence 33322 2455555555555552 343332 45555555555554 2333332 34555555555554433221 12
Q ss_pred CCcEEEeeCCcCcccCChhc----cCCCCccEEeCCCCcCc
Q 036717 248 SVEHLYLQNNALGGSIPNTF----FRGSALETLDLRDNNFS 284 (580)
Q Consensus 248 ~L~~L~l~~n~l~~~~~~~~----~~~~~L~~L~l~~n~l~ 284 (580)
.|+.|++++|++. .+|..+ ..++.+..+++.+|.++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3445555555544 222221 22244445555555443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=8.4e-20 Score=194.55 Aligned_cols=139 Identities=19% Similarity=0.311 Sum_probs=63.9
Q ss_pred CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717 55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD 134 (580)
Q Consensus 55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 134 (580)
+...|+++++.++ .+|..+ .++|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. ++|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 3455555555555 455433 234555555555555 3343332 35555555555555 4444321 2455555
Q ss_pred cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCC
Q 036717 135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE 213 (580)
Q Consensus 135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 213 (580)
+++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 5555554 2333322 24555555555554 2333331 345555555555442 222221 23444445554444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=4.1e-20 Score=183.44 Aligned_cols=204 Identities=25% Similarity=0.285 Sum_probs=92.0
Q ss_pred CCCCcEEEcccccCCCcCCccccCCC---CCCEEeccCccccc----cccccccCC-CCCCEEEcccCCCCCC----Cch
Q 036717 127 CFSLIWLDLSNNNFDGQIFPNYMNLT---QLQLLYLDNNHFSG----KIKDGLLRS-TELMVLDISNNRLSGH----IPS 194 (580)
Q Consensus 127 l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~~~ 194 (580)
+++|++|++++|.+....+..+..+. +|++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 44444444444444332222222222 25555555554442 111222333 4555555555555421 122
Q ss_pred hhhcCCCCCEEEcccCcCCCc----CchhccCCCCCcEEEccCCcCccccCCc----c-CCCCCcEEEeeCCcCcccCCh
Q 036717 195 WMGNFSYLQILSMSKNLLEGN----IPVQFNDLLDLEILNISENNLSGSMIST----L-NLSSVEHLYLQNNALGGSIPN 265 (580)
Q Consensus 195 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~ 265 (580)
.+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+.+..... + .+++|++|++++|.+++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 334444555555555555421 1222333445555555555554322111 1 345556666665555532221
Q ss_pred hcc-----CCCCccEEeCCCCcCcc----cCchhhccCcCcceeeccccccccc----CcccccCC-CCCCEEEeeCCe
Q 036717 266 TFF-----RGSALETLDLRDNNFSG----RIPHQINEHSNLRALLLRANYLQGP----IPHQLCRL-RKLGIMDLSHNR 330 (580)
Q Consensus 266 ~~~-----~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~ 330 (580)
.+. ..+.|+.|++++|.+++ .+...+..+++|+.+++++|.++.. ....+... +.++.+++.+|+
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 111 12466666666666641 1223344455666666666666633 22233333 466666666654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=4.1e-20 Score=183.39 Aligned_cols=280 Identities=24% Similarity=0.276 Sum_probs=147.5
Q ss_pred EEEcccccCCC-cCCccccCCCCCCEEeccCcccccc----ccccccCCCCCCEEEcccCCCCC------CCchhhhcCC
Q 036717 132 WLDLSNNNFDG-QIFPNYMNLTQLQLLYLDNNHFSGK----IKDGLLRSTELMVLDISNNRLSG------HIPSWMGNFS 200 (580)
Q Consensus 132 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~l~ 200 (580)
.|+|..+.+++ .....+..+++|+.|+++++.+++. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 45666666653 2233445566677777777776432 33344555667777777666542 1123344455
Q ss_pred CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcc----cCChhccCC-CCccE
Q 036717 201 YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGG----SIPNTFFRG-SALET 275 (580)
Q Consensus 201 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~-~~L~~ 275 (580)
+|+.|++++|.+.+..+..+..+.. . ++|++|++++|.+++ .+...+..+ ++|+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 5666666555554333333332222 1 234555555544442 112223333 55666
Q ss_pred EeCCCCcCccc----CchhhccCcCcceeeccccccccc----CcccccCCCCCCEEEeeCCeecCccChhhhhhccccc
Q 036717 276 LDLRDNNFSGR----IPHQINEHSNLRALLLRANYLQGP----IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV 347 (580)
Q Consensus 276 L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~ 347 (580)
|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+....
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~---- 217 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL---- 217 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh----
Confidence 66666665522 223344455666666666665532 222334445666677766666532222111100
Q ss_pred CCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCC
Q 036717 348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIP 427 (580)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 427 (580)
..+++|+.|++++|.+++...
T Consensus 218 -----------------------------------------------------------~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 218 -----------------------------------------------------------ASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred -----------------------------------------------------------cccCCCCEEecCCCcCchHHH
Confidence 014566777777776664322
Q ss_pred cccc-----cccCCCeEecccCcce----ecccccccCcccCCEEECCCCccccc----CchhhcCC-CCCCEEeccCCc
Q 036717 428 SEIG-----DLQNIHGLNLSYNFLS----GSIPESFSNLKMIESLDLSHNKLNGQ----IPPQLTEL-HSLSKFDVSYNN 493 (580)
Q Consensus 428 ~~~~-----~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~ 493 (580)
..+. ..+.|+.|++++|.++ ..+...+..+++|+++++++|.++.. ....+... +.|+.+++.+|+
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 2222 1367777777777775 22344555667788888888887744 44444445 577777777776
Q ss_pred c
Q 036717 494 L 494 (580)
Q Consensus 494 l 494 (580)
+
T Consensus 319 ~ 319 (319)
T cd00116 319 F 319 (319)
T ss_pred C
Confidence 4
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4.4e-19 Score=146.85 Aligned_cols=184 Identities=28% Similarity=0.476 Sum_probs=148.2
Q ss_pred ccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCC
Q 036717 243 TLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLG 322 (580)
Q Consensus 243 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 322 (580)
.+.+.+++.|.+++|+++ .+|..+..+.+|+.|++++|+++ ..|..+..++.|+.|+++-|.+. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 346677788888888888 66667888888888888888887 67888888888899888888887 7888899999999
Q ss_pred EEEeeCCeecC-ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeecccc
Q 036717 323 IMDLSHNRLYG-SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRY 401 (580)
Q Consensus 323 ~L~l~~n~l~~-~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (580)
.||+++|++.. .+|..|..
T Consensus 106 vldltynnl~e~~lpgnff~------------------------------------------------------------ 125 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFY------------------------------------------------------------ 125 (264)
T ss_pred hhhccccccccccCCcchhH------------------------------------------------------------
Confidence 99999988853 23332221
Q ss_pred ceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCC
Q 036717 402 ESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 481 (580)
Q Consensus 402 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 481 (580)
+..|+.|+|+.|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|.+.+|+++ .+|..++++
T Consensus 126 -------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 126 -------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred -------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 567778899999998 88888999999999999999988 78999999999999999999998 677777665
Q ss_pred C---CCCEEeccCCcccccCC
Q 036717 482 H---SLSKFDVSYNNLSGPIP 499 (580)
Q Consensus 482 ~---~L~~L~Ls~N~l~~~~p 499 (580)
. +=+.+.+.+|++..+|.
T Consensus 196 ~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 196 DLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred hhhhhHHHHhhhhCCCCChHH
Confidence 3 33456677788776654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=5.3e-18 Score=140.50 Aligned_cols=179 Identities=26% Similarity=0.475 Sum_probs=133.4
Q ss_pred ccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCc
Q 036717 148 YMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLE 227 (580)
Q Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 227 (580)
+..+.+++.|.+++|+++ ..|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++.|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345667777788888887 56667788888888888888887 66777888888888888888886 7788888888888
Q ss_pred EEEccCCcCccc--cCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccc
Q 036717 228 ILNISENNLSGS--MISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN 305 (580)
Q Consensus 228 ~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 305 (580)
.||+.+|++... +-.++.+..|+.|++++|.+. .+|..++.+++|+.|.+.+|.+- ..|..++.++.|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 888888887642 233447778888888888887 77778888888888888888876 67888888888888888888
Q ss_pred cccccCcccccCCC---CCCEEEeeCCeec
Q 036717 306 YLQGPIPHQLCRLR---KLGIMDLSHNRLY 332 (580)
Q Consensus 306 ~l~~~~~~~~~~l~---~L~~L~l~~n~l~ 332 (580)
.++ .+|..+..+. +=+.+.+.+|++.
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 887 4555444332 2233444555543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=1.1e-15 Score=162.75 Aligned_cols=118 Identities=36% Similarity=0.609 Sum_probs=106.3
Q ss_pred cccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEecc
Q 036717 411 HMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVS 490 (580)
Q Consensus 411 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 490 (580)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCc--ccCCcCccccCCCCCCCCCCCCCCCC
Q 036717 491 YNNLSGPIPDKE--QFSTFDESSYRGNLHLCGPPINKSCT 528 (580)
Q Consensus 491 ~N~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~~~~~C~ 528 (580)
+|+++|.+|... .+.......+.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 12233456789999999987666774
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.41 E-value=9.6e-15 Score=143.12 Aligned_cols=175 Identities=31% Similarity=0.486 Sum_probs=131.9
Q ss_pred CCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEE
Q 036717 246 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMD 325 (580)
Q Consensus 246 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 325 (580)
+.--...+++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|+.++++.|+++ ..|..+|.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456677777776 67777777777888888888776 67778888888888888888887 6677777665 77888
Q ss_pred eeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceec
Q 036717 326 LSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYK 405 (580)
Q Consensus 326 l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (580)
+++|+++ .+|..++.
T Consensus 150 ~sNNkl~-~lp~~ig~---------------------------------------------------------------- 164 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGL---------------------------------------------------------------- 164 (722)
T ss_pred EecCccc-cCCccccc----------------------------------------------------------------
Confidence 8888875 56654431
Q ss_pred ccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCC
Q 036717 406 GVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS 485 (580)
Q Consensus 406 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 485 (580)
.+.|..||.+.|.+. .+|..++.+.+|+.|+++.|++. ..|+.+..|+ |..||+|+|+++ .+|-.|..|+.|+
T Consensus 165 ---~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 165 ---LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQ 237 (722)
T ss_pred ---chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhhe
Confidence 566777888888887 67777888888888888888887 5666666554 778888888887 6788888888888
Q ss_pred EEeccCCcccc
Q 036717 486 KFDVSYNNLSG 496 (580)
Q Consensus 486 ~L~Ls~N~l~~ 496 (580)
+|-|.+|+|+.
T Consensus 238 ~l~LenNPLqS 248 (722)
T KOG0532|consen 238 VLQLENNPLQS 248 (722)
T ss_pred eeeeccCCCCC
Confidence 88888888874
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=5.2e-12 Score=128.95 Aligned_cols=82 Identities=40% Similarity=0.623 Sum_probs=38.3
Q ss_pred ccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccC
Q 036717 412 MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSY 491 (580)
Q Consensus 412 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 491 (580)
|++|++++|.+. ..+..+..+..+..+.+.+|++. ..+..++.+++++.|++++|+++.. +. +..+.+++.|++++
T Consensus 211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccC
Confidence 444444444322 23344444455555555555544 2244444555555555555555422 22 44455555555555
Q ss_pred Cccccc
Q 036717 492 NNLSGP 497 (580)
Q Consensus 492 N~l~~~ 497 (580)
|.++..
T Consensus 287 n~~~~~ 292 (394)
T COG4886 287 NSLSNA 292 (394)
T ss_pred cccccc
Confidence 555433
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=6e-12 Score=128.52 Aligned_cols=199 Identities=29% Similarity=0.412 Sum_probs=128.3
Q ss_pred EEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCC-CCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717 58 SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQ-GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS 136 (580)
Q Consensus 58 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 136 (580)
.+++..|.+...+.... .++.++.|++.+|.++ .++.....++ +|+.|++++|.+. .++.. ...+++|+.|+++
T Consensus 97 ~l~~~~~~~~~~~~~~~--~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSNISELL--ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccccCchhhh--cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhh-hhccccccccccC
Confidence 46666666532222221 3466777777777777 4555556563 7777777777776 55433 3567777777777
Q ss_pred cccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcC
Q 036717 137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNI 216 (580)
Q Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 216 (580)
+|++.. ++......++|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..
T Consensus 172 ~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 172 FNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred Cchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 777763 3333336677777777777776 44544444555777777777533 34555677777777777777765 33
Q ss_pred chhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChh
Q 036717 217 PVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNT 266 (580)
Q Consensus 217 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 266 (580)
+..+..+++++.|++++|.++.... .....+++.|+++++.+....+..
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhh
Confidence 5666777778888888887776655 446677888888887777554443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.27 E-value=7.8e-12 Score=109.10 Aligned_cols=126 Identities=24% Similarity=0.219 Sum_probs=33.2
Q ss_pred CCCCCcEEEccCCcccCCCCCC-CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhh-hcCCCCCE
Q 036717 30 NNTKLEVLYLINNSFSGFQLTG-AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRF 107 (580)
Q Consensus 30 ~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~ 107 (580)
+..++++|+|++|.|+.++... .+.+|+.|++++|.++ .++. + ..+++|+.|++++|+|+.. .+.+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~-l-~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG-L-PGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC-c-cChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 4445555555555555543332 3455555566655555 3332 1 2355566666666666532 2223 34556666
Q ss_pred EEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCC---ccccCCCCCCEEec
Q 036717 108 LDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIF---PNYMNLTQLQLLYL 159 (580)
Q Consensus 108 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l 159 (580)
|++++|++...-.-..+..+++|+.|++.+|++..... ..+..+|+|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 66666655421111223455666666666665542210 12345666666654
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.6e-13 Score=125.44 Aligned_cols=210 Identities=23% Similarity=0.183 Sum_probs=124.9
Q ss_pred hCCCCCcEEEccCCcccCCCC---CCCCCCccEEEccCCCCCccCC-hhHhhcCCCCcEEEcccCcCccccch-hhhcCC
Q 036717 29 ENNTKLEVLYLINNSFSGFQL---TGAQHGLLSLDISKNSFTGELP-QNMGIVLQKLVYMNISKNSFEGNIPS-SIAKMQ 103 (580)
Q Consensus 29 ~~l~~L~~L~L~~n~l~~~~~---~~~~~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~ 103 (580)
+++.+|+++.|.++.+..... ...+++++.|||++|-+..--+ ..+...+|+|+.|+++.|++...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 367778888888887766542 2377788888888886652211 23445688888888888877632211 112467
Q ss_pred CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccc-cccccCCCCCCEEE
Q 036717 104 GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKI-KDGLLRSTELMVLD 182 (580)
Q Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~ 182 (580)
+|+.|.++.|.++-.--..+...+|+|+.|+|..|...........-+..|++|+|++|.+.... -.....++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 78888888887764333344556788888888877532222333445667788888877765322 13346677777777
Q ss_pred cccCCCCCC-Cchh-----hhcCCCCCEEEcccCcCCCc-CchhccCCCCCcEEEccCCcCcc
Q 036717 183 ISNNRLSGH-IPSW-----MGNFSYLQILSMSKNLLEGN-IPVQFNDLLDLEILNISENNLSG 238 (580)
Q Consensus 183 L~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 238 (580)
++.+.+... .|+. ...+++|+.|++..|++... .-..+..+++|+.|.+..|.+..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 777776532 1222 23355666666666665321 11223344555555555555543
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=5.4e-13 Score=123.72 Aligned_cols=242 Identities=24% Similarity=0.320 Sum_probs=126.5
Q ss_pred CCCCcEEEcccCcCccc----cchhhhcCCCCCEEEcccCcCcc----ccchHH------HhCCCCCcEEEcccccCCCc
Q 036717 78 LQKLVYMNISKNSFEGN----IPSSIAKMQGLRFLDVSTNNFAG----ELSQSL------VTNCFSLIWLDLSNNNFDGQ 143 (580)
Q Consensus 78 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~------~~~l~~L~~L~L~~n~l~~~ 143 (580)
...++.+++++|.+... +...+++.+.|+..++++- ++| ++|..+ +..+++|++|+||+|.+...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34555556665555421 2234445566666666543 222 233221 23445666666666666533
Q ss_pred CCccc----cCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCc----
Q 036717 144 IFPNY----MNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN---- 215 (580)
Q Consensus 144 ~~~~~----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---- 215 (580)
.++.| ..+..|++|+|.+|.+...-...++. .|.+|. .+ ...+.-+.|+++....|++...
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeeccccccccHHH
Confidence 33322 34556666666666554211111100 000000 00 0012234566666666655422
Q ss_pred CchhccCCCCCcEEEccCCcCccccCCc-----cCCCCCcEEEeeCCcCccc----CChhccCCCCccEEeCCCCcCccc
Q 036717 216 IPVQFNDLLDLEILNISENNLSGSMIST-----LNLSSVEHLYLQNNALGGS----IPNTFFRGSALETLDLRDNNFSGR 286 (580)
Q Consensus 216 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~ 286 (580)
+...|...+.|+.+.++.|.|....... ..+++|+.|++++|.++.. +...+..+++|+++++++|.+...
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 2234555566666666666654333211 1667777777777766532 234555667788888888877644
Q ss_pred Cchhh-----ccCcCcceeecccccccccC----cccccCCCCCCEEEeeCCee
Q 036717 287 IPHQI-----NEHSNLRALLLRANYLQGPI----PHQLCRLRKLGIMDLSHNRL 331 (580)
Q Consensus 287 ~~~~~-----~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l 331 (580)
....+ ...|+|+++.+.+|.|+... ...+...+.|..|++++|++
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 33332 33678888888888777322 23344567888888888888
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=3.8e-13 Score=132.11 Aligned_cols=211 Identities=25% Similarity=0.353 Sum_probs=168.1
Q ss_pred EEEccCCcccCCCCCC---CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEccc
Q 036717 36 VLYLINNSFSGFQLTG---AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVST 112 (580)
Q Consensus 36 ~L~L~~n~l~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (580)
.|.|++-++..++... .+.--...|++.|++. ++|..+. .+-.|+.+.+..|.+. .+|..++++..|+++||+.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 4556666666554443 2333456799999998 8988775 5778899999999998 7899999999999999999
Q ss_pred CcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCC
Q 036717 113 NNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192 (580)
Q Consensus 113 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 192 (580)
|++. ..|..++ . --|+.|.+++|+++ .+|+.++.++.|..|+.+.|.+. .+|..+..+.+|+.|.+..|++. .+
T Consensus 131 NqlS-~lp~~lC-~-lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~l 204 (722)
T KOG0532|consen 131 NQLS-HLPDGLC-D-LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DL 204 (722)
T ss_pred chhh-cCChhhh-c-CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hC
Confidence 9998 7887663 3 35899999999998 67888888899999999999998 67888899999999999999998 55
Q ss_pred chhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc---CCCCCcEEEeeCC
Q 036717 193 PSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL---NLSSVEHLYLQNN 257 (580)
Q Consensus 193 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~L~~L~l~~n 257 (580)
|..+..+ .|..||++.|++. .+|..|..|..|++|.|.+|.+...+.... ...-.++|+..-|
T Consensus 205 p~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 205 PEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 6667754 6899999999998 889999999999999999999886544332 2233456666666
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=1.8e-11 Score=130.66 Aligned_cols=92 Identities=36% Similarity=0.625 Sum_probs=85.7
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCC-CCCCEE
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-HSLSKF 487 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L 487 (580)
+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++|+++|.+|..+..+ .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999998875 467899
Q ss_pred eccCCcccccCCC
Q 036717 488 DVSYNNLSGPIPD 500 (580)
Q Consensus 488 ~Ls~N~l~~~~p~ 500 (580)
++++|+..|.+|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999998886653
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=1.1e-11 Score=108.18 Aligned_cols=128 Identities=27% Similarity=0.325 Sum_probs=36.4
Q ss_pred CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc
Q 036717 52 AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI 131 (580)
Q Consensus 52 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 131 (580)
++..++.|+|++|.|+ .+. .+...+.+|+.|++++|.|+.. +.+..+++|+.|++++|.++ .+...+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 4445566666666655 332 2322355666666666666532 24555666666666666665 44433333456666
Q ss_pred EEEcccccCCCcC-CccccCCCCCCEEeccCccccccc---cccccCCCCCCEEEcc
Q 036717 132 WLDLSNNNFDGQI-FPNYMNLTQLQLLYLDNNHFSGKI---KDGLLRSTELMVLDIS 184 (580)
Q Consensus 132 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~L~ 184 (580)
+|++++|+|.... ...+..+++|+.|++.+|.+.... ...+..+|+|+.||-.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 6666666664321 134455666666666666655321 1123445666666543
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=6.3e-12 Score=114.04 Aligned_cols=134 Identities=27% Similarity=0.296 Sum_probs=95.4
Q ss_pred ccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhc
Q 036717 292 NEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYY 371 (580)
Q Consensus 292 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 371 (580)
.....|+++++++|.|+ .+.+...-.++++.|++++|.+.. +.++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~nL----------------------------- 325 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQNL----------------------------- 325 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehhh-----------------------------
Confidence 33456777888888777 566666667788888888887751 1110
Q ss_pred ccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceeccc
Q 036717 372 NSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIP 451 (580)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 451 (580)
..+++|+.||||+|.++ .+.++-..+.+.+.|.|+.|.+.. -
T Consensus 326 -----------------------------------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--L 367 (490)
T KOG1259|consen 326 -----------------------------------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--L 367 (490)
T ss_pred -----------------------------------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--h
Confidence 01677888888888887 555555677788888888888762 3
Q ss_pred ccccCcccCCEEECCCCccccc-CchhhcCCCCCCEEeccCCcccccC
Q 036717 452 ESFSNLKMIESLDLSHNKLNGQ-IPPQLTELHSLSKFDVSYNNLSGPI 498 (580)
Q Consensus 452 ~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~ 498 (580)
..++.+-+|..||+++|+|... -...++++|.|+.+.|.+|++.+.+
T Consensus 368 SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 4567778888888888888643 2346788888888889999888644
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.7e-12 Score=120.82 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=74.9
Q ss_pred CCCCccEEEccCCCCCccCCh-hHhhcCCCCcEEEcccCcCccc--cchhhhcCCCCCEEEcccCcCccccchHHHhCCC
Q 036717 52 AQHGLLSLDISKNSFTGELPQ-NMGIVLQKLVYMNISKNSFEGN--IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCF 128 (580)
Q Consensus 52 ~~~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 128 (580)
++.+|+.+.|.++.+. ..+. .....|++++.|||++|-+... +..-...+|+|+.|+++.|.+........-..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4556666666666654 2221 2334566666666666655422 1223345666666666666554322222222345
Q ss_pred CCcEEEcccccCCCcCC-ccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCC-chhhhcCCCCCEEE
Q 036717 129 SLIWLDLSNNNFDGQIF-PNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI-PSWMGNFSYLQILS 206 (580)
Q Consensus 129 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 206 (580)
+|+.|.++.|.++.... .....+|+|+.|++.+|............+..|+.|||++|.+.... -...+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 55555555555542111 12234455555555555322122222233444555555555544211 01233444444455
Q ss_pred cccCcCC
Q 036717 207 MSKNLLE 213 (580)
Q Consensus 207 l~~n~l~ 213 (580)
++.+.+.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 5444443
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=7.7e-12 Score=116.17 Aligned_cols=183 Identities=19% Similarity=0.234 Sum_probs=108.1
Q ss_pred cCCCCcEEEcccCcCccccch----hhhcCCCCCEEEcccCcCccccchHH-------------HhCCCCCcEEEccccc
Q 036717 77 VLQKLVYMNISKNSFEGNIPS----SIAKMQGLRFLDVSTNNFAGELSQSL-------------VTNCFSLIWLDLSNNN 139 (580)
Q Consensus 77 ~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~-------------~~~l~~L~~L~L~~n~ 139 (580)
.+++|++|+||+|.+....+. -+..+..|++|.|.+|.+. ...... ...-+.|+.+..++|+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 345666666666655433332 2334566666666666553 111111 1233567777777777
Q ss_pred CCCcC----CccccCCCCCCEEeccCcccccc----ccccccCCCCCCEEEcccCCCCCCC----chhhhcCCCCCEEEc
Q 036717 140 FDGQI----FPNYMNLTQLQLLYLDNNHFSGK----IKDGLLRSTELMVLDISNNRLSGHI----PSWMGNFSYLQILSM 207 (580)
Q Consensus 140 l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l 207 (580)
+.... ...|...+.|+.+.++.|.|... ....+..+++|+.|||..|.++... ...++.+++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 65422 22345567777777777766421 2345667777888888777776432 334556677888888
Q ss_pred ccCcCCCcCchhcc-----CCCCCcEEEccCCcCccccCCcc-----CCCCCcEEEeeCCcCc
Q 036717 208 SKNLLEGNIPVQFN-----DLLDLEILNISENNLSGSMISTL-----NLSSVEHLYLQNNALG 260 (580)
Q Consensus 208 ~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~l~ 260 (580)
++|.+......+|. ..+.|+++.+.+|.++....... ..+.|+.|++++|.+.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 88877654433332 35778888888887764322211 4678888888888883
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.4e-11 Score=111.83 Aligned_cols=132 Identities=28% Similarity=0.353 Sum_probs=104.3
Q ss_pred CCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccC
Q 036717 269 RGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVG 348 (580)
Q Consensus 269 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~ 348 (580)
....|+++|+++|.|+ .+.++..-.|.++.|+++.|.+... ..+..+++|+.||+++|.++. +-.+-.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~-------- 349 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHL-------- 349 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHh--------
Confidence 3467899999999998 6777888889999999999999743 338889999999999999862 111100
Q ss_pred CCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCc
Q 036717 349 NESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPS 428 (580)
Q Consensus 349 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 428 (580)
.+-+.+.|.|+.|.+.. -.
T Consensus 350 -----------------------------------------------------------KLGNIKtL~La~N~iE~--LS 368 (490)
T KOG1259|consen 350 -----------------------------------------------------------KLGNIKTLKLAQNKIET--LS 368 (490)
T ss_pred -----------------------------------------------------------hhcCEeeeehhhhhHhh--hh
Confidence 05678889999999862 23
Q ss_pred ccccccCCCeEecccCcceecc-cccccCcccCCEEECCCCccccc
Q 036717 429 EIGDLQNIHGLNLSYNFLSGSI-PESFSNLKMIESLDLSHNKLNGQ 473 (580)
Q Consensus 429 ~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ 473 (580)
.++.+-+|..||+++|+|.... ...+++++.|+++.|.+|.+.+.
T Consensus 369 GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 369 GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 4778889999999999998532 36799999999999999999854
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=1.7e-10 Score=125.81 Aligned_cols=272 Identities=22% Similarity=0.228 Sum_probs=162.1
Q ss_pred CCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCC--CCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCE
Q 036717 30 NNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNS--FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRF 107 (580)
Q Consensus 30 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 107 (580)
.....+.+.+-+|.+..+.....++.|++|-+..|. +. .++..+|..++.|++||+++|.--+.+|..++.+-+|++
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 456778888888888776555567789898888886 44 777887888999999999987666688999999999999
Q ss_pred EEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccc--ccccccccCCCCCCEEEccc
Q 036717 108 LDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS--GKIKDGLLRSTELMVLDISN 185 (580)
Q Consensus 108 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~ 185 (580)
|++++..+. .+|..+ .++..|.+|++..+.-....+.....+++|++|.+...... ...-..+..+.+|+.+....
T Consensus 600 L~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999999888 888876 78899999999887765455566666889999888765422 11222334444555554433
Q ss_pred CCCCCCCchhhhcCCCCC----EEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc------C-CCCCcEEEe
Q 036717 186 NRLSGHIPSWMGNFSYLQ----ILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL------N-LSSVEHLYL 254 (580)
Q Consensus 186 n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~-~~~L~~L~l 254 (580)
... .+-..+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++.+........ . ++++..+..
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 222 0111122222222 2222222222 334455666777777777766653322111 1 223333333
Q ss_pred eCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccc
Q 036717 255 QNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQ 308 (580)
Q Consensus 255 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 308 (580)
.++... ..+.+....++|+.|.+..+.....+......+..+..+.+..+.+.
T Consensus 755 ~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 755 LNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred hccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 333222 12222333456666666666554444444444444444444444443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.06 E-value=1.3e-10 Score=83.35 Aligned_cols=60 Identities=45% Similarity=0.625 Sum_probs=35.2
Q ss_pred CCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcc
Q 036717 435 NIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNL 494 (580)
Q Consensus 435 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 494 (580)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455566666666555555556666666666666666555555566666666666666553
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=3.1e-10 Score=81.36 Aligned_cols=61 Identities=43% Similarity=0.609 Sum_probs=57.7
Q ss_pred ccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcc
Q 036717 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL 470 (580)
Q Consensus 410 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 470 (580)
++|+.|++++|+++...++.|.++++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988889999999999999999999999999999999999999999986
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=7.9e-10 Score=120.67 Aligned_cols=59 Identities=29% Similarity=0.349 Sum_probs=40.5
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceec-ccccccCcccCCEEECCC
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGS-IPESFSNLKMIESLDLSH 467 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~ 467 (580)
.++|+.|.+..+.....+......+..++.+-+..+.+.+. .-...++++++..+.++.
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence 67888899988887767666677777777777777777755 344455555555555544
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=1.3e-10 Score=118.74 Aligned_cols=221 Identities=24% Similarity=0.243 Sum_probs=106.4
Q ss_pred CCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEE
Q 036717 78 LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLL 157 (580)
Q Consensus 78 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 157 (580)
+.+|+.|++.+|+|..+ ...+..+++|++|++++|.|+ .+.. +..++.|+.|++++|.++. ...+..++.|+.+
T Consensus 94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLL 167 (414)
T ss_pred ccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchh--ccCCccchhhhcc
Confidence 45555555555555522 222445555555555555555 3332 2344445555666555542 2333445566666
Q ss_pred eccCcccccccc-ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCC--CcEEEccCC
Q 036717 158 YLDNNHFSGKIK-DGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD--LEILNISEN 234 (580)
Q Consensus 158 ~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n 234 (580)
++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++..- .+..+.. |+.+++++|
T Consensus 168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGN 242 (414)
T ss_pred cCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccC
Confidence 666665553322 1 34455666666666655421 22333333444455555554211 1111222 556666666
Q ss_pred cCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCccc---Cchh-hccCcCcceeeccccccccc
Q 036717 235 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGR---IPHQ-INEHSNLRALLLRANYLQGP 310 (580)
Q Consensus 235 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~-~~~~~~L~~L~l~~n~l~~~ 310 (580)
.+.......-.+..+..+++..|.+... ..+...+.+..+....+.+... .... ....+.++...+..|.+...
T Consensus 243 ~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 243 RISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 6554432222455666666666665422 1233334455555555554411 1111 33445666777777666544
Q ss_pred C
Q 036717 311 I 311 (580)
Q Consensus 311 ~ 311 (580)
.
T Consensus 321 ~ 321 (414)
T KOG0531|consen 321 S 321 (414)
T ss_pred c
Confidence 3
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2e-10 Score=117.35 Aligned_cols=266 Identities=24% Similarity=0.247 Sum_probs=160.7
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCC-CCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEE
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGF-QLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMN 85 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 85 (580)
+..+.++...+.+. ..... ...+..++.++++.|.+..+ .....+.+|..|++.+|.+. .+...+ ..+++|++|+
T Consensus 49 ~~~~~~~~~~~~~~-~~~~~-~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ 124 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDG-SDEDL-VESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLL-SSLVNLQVLD 124 (414)
T ss_pred chhhhhcchhcccc-chhhh-HHHhHhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccch-hhhhcchhee
Confidence 34455555555443 11111 13566677777777777762 22346677888888888776 443322 2577888888
Q ss_pred cccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCC-ccccCCCCCCEEeccCccc
Q 036717 86 ISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIF-PNYMNLTQLQLLYLDNNHF 164 (580)
Q Consensus 86 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l 164 (580)
+++|.|+.. ..+..++.|+.|++++|.+. .+.. +..+..|+.+++++|.+....+ . ...+.+++.+++.+|.+
T Consensus 125 ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 125 LSFNKITKL--EGLSTLTLLKELNLSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccccccccc--cchhhccchhhheeccCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 888887754 34566777888888888777 4444 3447778888888887764433 2 46677788888888877
Q ss_pred cccccccccCCCCCCEEEcccCCCCCCCchhhhcCC--CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCC
Q 036717 165 SGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFS--YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIS 242 (580)
Q Consensus 165 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 242 (580)
... ..+..+..+..+++..|.+...-+ +..+. +|+.+++++|.+. ..+..+..+..+..+++..|.+......
T Consensus 199 ~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~ 273 (414)
T KOG0531|consen 199 REI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGL 273 (414)
T ss_pred hcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccccc
Confidence 532 233444555555777777663222 22222 3778888888776 3335566677778888887776643321
Q ss_pred ccCCCCCcEEEeeCCcCccc---CChh-ccCCCCccEEeCCCCcCcccCc
Q 036717 243 TLNLSSVEHLYLQNNALGGS---IPNT-FFRGSALETLDLRDNNFSGRIP 288 (580)
Q Consensus 243 ~~~~~~L~~L~l~~n~l~~~---~~~~-~~~~~~L~~L~l~~n~l~~~~~ 288 (580)
. ..+.+..+....+.+... .... ....+.++...+..|.+....+
T Consensus 274 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 274 E-RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred c-ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 1 344555556666655421 1111 3445677888888887765443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.2e-10 Score=101.29 Aligned_cols=177 Identities=24% Similarity=0.240 Sum_probs=98.5
Q ss_pred CCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC--CCCCCccEEEccCCC-CCccCChhHhhcCCCCcEE
Q 036717 8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNS-FTGELPQNMGIVLQKLVYM 84 (580)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L 84 (580)
.|+.||||+..|+..-...+...|.+|+.|.|.++++.+.-.. +.-.+|+.|+++.+. ++.....-++.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4677777777776444445556777777777777777664111 244667777777764 4433334455667777777
Q ss_pred EcccCcCccccch-hhhc-CCCCCEEEcccCcCc--cccchHHHhCCCCCcEEEccccc-CCCcCCccccCCCCCCEEec
Q 036717 85 NISKNSFEGNIPS-SIAK-MQGLRFLDVSTNNFA--GELSQSLVTNCFSLIWLDLSNNN-FDGQIFPNYMNLTQLQLLYL 159 (580)
Q Consensus 85 ~l~~n~l~~~~~~-~~~~-l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 159 (580)
++++|.+....-. .++. -++|+.|+++++.-. ..--..+...|++|.+|||++|. ++......|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7777765532211 1111 245677777665211 11112234566777777776643 33333345556666666666
Q ss_pred cCcccccccccc---ccCCCCCCEEEcccC
Q 036717 160 DNNHFSGKIKDG---LLRSTELMVLDISNN 186 (580)
Q Consensus 160 ~~n~l~~~~~~~---l~~l~~L~~L~L~~n 186 (580)
+.|.. ++|.. +...++|.+|+..++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66543 33332 234455666665554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.8e-09 Score=97.08 Aligned_cols=200 Identities=23% Similarity=0.209 Sum_probs=120.9
Q ss_pred CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCC----CCCCccEEEccCCCCCccCChhHhhcCCCCcEEE
Q 036717 10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTG----AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMN 85 (580)
Q Consensus 10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 85 (580)
+.+|+.+-.|.......+. -.....+.+....+....... +-..|++||||+..++-.--..+...|++|+.|.
T Consensus 139 ~~lDl~~r~i~p~~l~~l~--~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lS 216 (419)
T KOG2120|consen 139 QTLDLTGRNIHPDVLGRLL--SRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLS 216 (419)
T ss_pred eeeccCCCccChhHHHHHH--hCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcc
Confidence 5677777776622111111 234455555544433321111 3346899999988877444455666788999999
Q ss_pred cccCcCccccchhhhcCCCCCEEEcccCc-CccccchHHHhCCCCCcEEEcccccCCCcCCccc-c-CCCCCCEEeccCc
Q 036717 86 ISKNSFEGNIPSSIAKMQGLRFLDVSTNN-FAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNY-M-NLTQLQLLYLDNN 162 (580)
Q Consensus 86 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~-~l~~L~~L~l~~n 162 (580)
+.++++.+.+...++.-.+|+.|+++.+. ++......++.+|+.|..|++++|.+........ . --++|+.|+++++
T Consensus 217 lEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 217 LEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred ccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 99999998888889999999999998763 4433344557888899999999887764322211 1 1256777777765
Q ss_pred ccc---ccccccccCCCCCCEEEcccCCC-CCCCchhhhcCCCCCEEEcccCc
Q 036717 163 HFS---GKIKDGLLRSTELMVLDISNNRL-SGHIPSWMGNFSYLQILSMSKNL 211 (580)
Q Consensus 163 ~l~---~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~ 211 (580)
.-. ..+..-...+++|.+|||+.|.. +......|-.++.|++|.++.|.
T Consensus 297 rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 297 RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 311 11111224566777777766542 22222334456666666666664
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.59 E-value=8.3e-09 Score=92.83 Aligned_cols=240 Identities=22% Similarity=0.258 Sum_probs=126.4
Q ss_pred CCCCcEEEcccCcCccccchh----hhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCC
Q 036717 78 LQKLVYMNISKNSFEGNIPSS----IAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQ 153 (580)
Q Consensus 78 l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 153 (580)
+..+..++||+|.|......+ +++-.+|+..+++.- ++|..-..+..++. ...+++.+||+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~--------------~Ll~aLlkcp~ 93 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLV--------------MLLKALLKCPR 93 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHH--------------HHHHHHhcCCc
Confidence 456666666666665333333 333455666666543 22222221111100 11233445555
Q ss_pred CCEEeccCccccccccc----cccCCCCCCEEEcccCCCCCCCchhh-------------hcCCCCCEEEcccCcCCCcC
Q 036717 154 LQLLYLDNNHFSGKIKD----GLLRSTELMVLDISNNRLSGHIPSWM-------------GNFSYLQILSMSKNLLEGNI 216 (580)
Q Consensus 154 L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~-------------~~l~~L~~L~l~~n~l~~~~ 216 (580)
|+..++++|.+....|. .+++.+.|.+|.+++|.+......-+ .+-|.|++.....|++..-.
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence 55555555555433332 23455666666666666542211111 23456777777777765221
Q ss_pred c----hhccCCCCCcEEEccCCcCccccCCc------cCCCCCcEEEeeCCcCcccC----ChhccCCCCccEEeCCCCc
Q 036717 217 P----VQFNDLLDLEILNISENNLSGSMIST------LNLSSVEHLYLQNNALGGSI----PNTFFRGSALETLDLRDNN 282 (580)
Q Consensus 217 ~----~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~ 282 (580)
. ..+..-.+|+++.+..|.|....... +.+.+|+.|++++|.++-.. ...+...+.|+.|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 1 12333357788888887775443222 26678888888888776332 2344555678888888887
Q ss_pred CcccCchhh------ccCcCcceeecccccccccCcccc-------cCCCCCCEEEeeCCeec
Q 036717 283 FSGRIPHQI------NEHSNLRALLLRANYLQGPIPHQL-------CRLRKLGIMDLSHNRLY 332 (580)
Q Consensus 283 l~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~ 332 (580)
++......+ ...|+|..|-...|.+.+.+.... ..++-|..+.+.+|++.
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 764433322 134677777777776654332211 23455566666667664
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.50 E-value=7e-09 Score=83.52 Aligned_cols=90 Identities=22% Similarity=0.354 Sum_probs=64.9
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 488 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 488 (580)
++.++.|+|++|+++ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|-.||..+|.+. .+|..+---+.....+
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~ 152 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIK 152 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHH
Confidence 456777888888888 67777888888888888888888 67777777888888888888877 5555433333444456
Q ss_pred ccCCcccccCCCC
Q 036717 489 VSYNNLSGPIPDK 501 (580)
Q Consensus 489 Ls~N~l~~~~p~~ 501 (580)
+.++++.+.+|..
T Consensus 153 lgnepl~~~~~~k 165 (177)
T KOG4579|consen 153 LGNEPLGDETKKK 165 (177)
T ss_pred hcCCcccccCccc
Confidence 6777777766644
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=1.9e-09 Score=109.46 Aligned_cols=178 Identities=27% Similarity=0.263 Sum_probs=82.8
Q ss_pred chHHhhCCCCCcEEEccCCcccCCCCC-CCCCCccEEEccCCCC----------CccCChhHhhcCCCCcEEEcccCcCc
Q 036717 24 PTWLLENNTKLEVLYLINNSFSGFQLT-GAQHGLLSLDISKNSF----------TGELPQNMGIVLQKLVYMNISKNSFE 92 (580)
Q Consensus 24 ~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~L~~n~l----------~~~~~~~~~~~l~~L~~L~l~~n~l~ 92 (580)
|-++| .+..|++|.|.++.+....-. .--..|+.|-.++. + .|.+.... ....|...++++|.+.
T Consensus 102 pi~if-pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIF-PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSP--VWNKLATASFSYNRLV 177 (1096)
T ss_pred Cceec-cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccch--hhhhHhhhhcchhhHH
Confidence 55666 788888888888877642100 01112222222111 0 01111111 0124455555555555
Q ss_pred cccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccc
Q 036717 93 GNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGL 172 (580)
Q Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (580)
..-.++.-++.|+.|+|++|+++ .+. .+..|++|++|||++|.+.....-...++. |+.|.+++|.++.. ..+
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gi 250 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGI 250 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhH
Confidence 33445555555556666655555 222 234555556666665555422111122222 55566665555422 224
Q ss_pred cCCCCCCEEEcccCCCCCCC-chhhhcCCCCCEEEcccCcC
Q 036717 173 LRSTELMVLDISNNRLSGHI-PSWMGNFSYLQILSMSKNLL 212 (580)
Q Consensus 173 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l 212 (580)
.++.+|+.||+++|-+.+.- -..++.+..|+.|.|.+|.+
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 45555566666665544321 11233444555555555544
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=8.6e-08 Score=87.58 Aligned_cols=225 Identities=21% Similarity=0.252 Sum_probs=113.6
Q ss_pred CCcEEEccCCcCccccCCcc---CCCCCcEEEeeCCcCcc--cCChhccCCCCccEEeCCCCcCcccCchhhccCcCcce
Q 036717 225 DLEILNISENNLSGSMISTL---NLSSVEHLYLQNNALGG--SIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRA 299 (580)
Q Consensus 225 ~L~~L~l~~n~l~~~~~~~~---~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 299 (580)
.++.+.+.++.|........ ..+.++.++|.+|.|++ .+...+.+++.|++|+++.|++...+-..-....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 33444444444443332221 45667777777777763 23344566777777777777776333221124457777
Q ss_pred eecccccccc-cCcccccCCCCCCEEEeeCCeecCcc--ChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccc
Q 036717 300 LLLRANYLQG-PIPHQLCRLRKLGIMDLSHNRLYGSI--PACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQ 376 (580)
Q Consensus 300 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 376 (580)
|.|.+..+.- .....+..+|.++.+.++.|.+.... ..|... +.....+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~----------------------------~s~~v~t 177 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED----------------------------WSTEVLT 177 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc----------------------------cchhhhh
Confidence 7777766541 22334556677777777777542100 001100 0000011
Q ss_pred cccccch-hhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCC-cccccccCCCeEecccCcceecc-ccc
Q 036717 377 LRLDESD-LRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIP-SEIGDLQNIHGLNLSYNFLSGSI-PES 453 (580)
Q Consensus 377 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~-p~~ 453 (580)
++...+. ..|.. .++. +..++++..+.+..|.+...-. ..+..++.+..|+|+.|+|...- -++
T Consensus 178 lh~~~c~~~~w~~---------~~~l----~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~ 244 (418)
T KOG2982|consen 178 LHQLPCLEQLWLN---------KNKL----SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA 244 (418)
T ss_pred hhcCCcHHHHHHH---------HHhH----HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH
Confidence 1111000 00100 0000 0225667777777776653322 33455666667777777776422 255
Q ss_pred ccCcccCCEEECCCCcccccCch------hhcCCCCCCEEecc
Q 036717 454 FSNLKMIESLDLSHNKLNGQIPP------QLTELHSLSKFDVS 490 (580)
Q Consensus 454 ~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~Ls 490 (580)
+.++++|..|.+++|.+...... .++.+++++.|+=+
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 66777777777777776533221 23556666666543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.4e-07 Score=86.28 Aligned_cols=205 Identities=14% Similarity=0.146 Sum_probs=104.9
Q ss_pred HhhcCCCCcEEEcccCcCcc--ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCC-ccccC
Q 036717 74 MGIVLQKLVYMNISKNSFEG--NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIF-PNYMN 150 (580)
Q Consensus 74 ~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~ 150 (580)
++..+++++.+||.+|.|+. .+..-+.++|.|+.|+++.|++...|...- ....+|+.|.|.+..+.-... ..+..
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 33456677777777777663 233345567777777777776663332211 244567777776665543222 23456
Q ss_pred CCCCCEEeccCcccccc--ccccccC-CCCCCEEEcccCCCCC--CCchhhhcCCCCCEEEcccCcCCCc-CchhccCCC
Q 036717 151 LTQLQLLYLDNNHFSGK--IKDGLLR-STELMVLDISNNRLSG--HIPSWMGNFSYLQILSMSKNLLEGN-IPVQFNDLL 224 (580)
Q Consensus 151 l~~L~~L~l~~n~l~~~--~~~~l~~-l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 224 (580)
+|.+++|.++.|.+... ..+.... .+.++++.+-.|.... .....-.-++++..+.+..|.+... ....+..++
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 67777777777643311 1111111 1234444444332210 0000111245666666666655432 223444555
Q ss_pred CCcEEEccCCcCccccCC--ccCCCCCcEEEeeCCcCcccCCh------hccCCCCccEEeCC
Q 036717 225 DLEILNISENNLSGSMIS--TLNLSSVEHLYLQNNALGGSIPN------TFFRGSALETLDLR 279 (580)
Q Consensus 225 ~L~~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~------~~~~~~~L~~L~l~ 279 (580)
.+..|+|+.++|.....- .-.++.|..|.++++.+.+.... .++.+++++.|+=+
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 666677777666543221 11667777777777766543221 24556677776544
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=4.7e-07 Score=81.79 Aligned_cols=185 Identities=18% Similarity=0.197 Sum_probs=116.5
Q ss_pred cCCCCcEEEcccCcCccccchh----hhcCCCCCEEEcccCcCcc----ccchHH--------HhCCCCCcEEEcccccC
Q 036717 77 VLQKLVYMNISKNSFEGNIPSS----IAKMQGLRFLDVSTNNFAG----ELSQSL--------VTNCFSLIWLDLSNNNF 140 (580)
Q Consensus 77 ~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~----~~~~~~--------~~~l~~L~~L~L~~n~l 140 (580)
.||+|+..+||.|.+....|.. +++-+.|++|.+++|.+.. .+...+ ...-+.|+..+.+.|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 5777777777777776555543 4455678888887776541 111111 12346788888888887
Q ss_pred CCcCCc----cccCCCCCCEEeccCccccccc-----cccccCCCCCCEEEcccCCCCCCCc----hhhhcCCCCCEEEc
Q 036717 141 DGQIFP----NYMNLTQLQLLYLDNNHFSGKI-----KDGLLRSTELMVLDISNNRLSGHIP----SWMGNFSYLQILSM 207 (580)
Q Consensus 141 ~~~~~~----~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l 207 (580)
...... .+..-.+|+++.+..|.|.... ...+..+.+|+.||+..|.++.... ..+...+.|+.|.+
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 632211 1223357888888888776321 1223556788888888888774333 33445667888888
Q ss_pred ccCcCCCcCchhc----c--CCCCCcEEEccCCcCccccCCc-----c---CCCCCcEEEeeCCcCcc
Q 036717 208 SKNLLEGNIPVQF----N--DLLDLEILNISENNLSGSMIST-----L---NLSSVEHLYLQNNALGG 261 (580)
Q Consensus 208 ~~n~l~~~~~~~~----~--~l~~L~~L~l~~n~l~~~~~~~-----~---~~~~L~~L~l~~n~l~~ 261 (580)
..|-++.....++ . ..++|..|...+|.+.+..... + .+|-|..|.+.+|.+..
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 8888775443332 2 3578888888888765533222 1 56778888888888863
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=2.4e-08 Score=101.56 Aligned_cols=127 Identities=26% Similarity=0.215 Sum_probs=82.2
Q ss_pred CCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEccc
Q 036717 9 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISK 88 (580)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 88 (580)
|...+.+.|++. .+. ....-++.|+.|+|++|+++.......++.|++|||++|.+. .+|..-...|. |..|++++
T Consensus 166 L~~a~fsyN~L~-~mD-~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMD-ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHH-HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence 455566666665 332 233456777788888887776654456777788888888776 56654333344 77788888
Q ss_pred CcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCC
Q 036717 89 NSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFD 141 (580)
Q Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 141 (580)
|.++.. ..+.++++|+.||+++|-+.+.-.-..+..+..|+.|+|.+|++-
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 877633 456777788888888877664333333445667777777777653
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=1.1e-07 Score=76.74 Aligned_cols=80 Identities=24% Similarity=0.431 Sum_probs=33.4
Q ss_pred ccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEc
Q 036717 56 LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDL 135 (580)
Q Consensus 56 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 135 (580)
|+.++|++|.+. ..|..+...++.++.|++++|.|+ .+|.+++.++.|+.|+++.|.+. ..|.-++ .+.++..|+.
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~-~L~~l~~Lds 130 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIA-PLIKLDMLDS 130 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHH-HHHhHHHhcC
Confidence 334444444444 344444333444444444444444 33444444444444444444443 3333322 2444444444
Q ss_pred cccc
Q 036717 136 SNNN 139 (580)
Q Consensus 136 ~~n~ 139 (580)
.+|.
T Consensus 131 ~~na 134 (177)
T KOG4579|consen 131 PENA 134 (177)
T ss_pred CCCc
Confidence 4433
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=3.1e-06 Score=55.30 Aligned_cols=36 Identities=39% Similarity=0.657 Sum_probs=15.4
Q ss_pred CCCeEecccCcceecccccccCcccCCEEECCCCccc
Q 036717 435 NIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN 471 (580)
Q Consensus 435 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 471 (580)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=4.6e-06 Score=54.50 Aligned_cols=38 Identities=39% Similarity=0.721 Sum_probs=32.5
Q ss_pred ccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccc
Q 036717 458 KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSG 496 (580)
Q Consensus 458 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 496 (580)
++|++|++++|+|+ .+|..+.++++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 47999999999999 567789999999999999999983
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.97 E-value=1.6e-05 Score=66.91 Aligned_cols=126 Identities=14% Similarity=0.181 Sum_probs=54.3
Q ss_pred CChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCcccc
Q 036717 70 LPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM 149 (580)
Q Consensus 70 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 149 (580)
++...|..+++|+.+.+.. .+..+....|.++++|+.+++.++ +. .++...|.++++++.+.+.+ .+.......|.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence 4455555666777777664 455455556666766777777654 44 55666666666677766654 33333344555
Q ss_pred CCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCC
Q 036717 150 NLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYL 202 (580)
Q Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 202 (580)
.+++|+.+++..+ +.......|.+. +++.+.+.. .+.......|.++++|
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666666666543 433344445554 666666554 2332334455555444
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.96 E-value=3.7e-07 Score=87.48 Aligned_cols=132 Identities=19% Similarity=0.111 Sum_probs=63.5
Q ss_pred CCCCCEEEcccCCCCC-CCchhh-hcCCCCCEEEcccCcC-CCcCchhc-cCCCCCcEEEccCCcCcccc--CC-ccCCC
Q 036717 175 STELMVLDISNNRLSG-HIPSWM-GNFSYLQILSMSKNLL-EGNIPVQF-NDLLDLEILNISENNLSGSM--IS-TLNLS 247 (580)
Q Consensus 175 l~~L~~L~L~~n~l~~-~~~~~~-~~l~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~l~~~~--~~-~~~~~ 247 (580)
+..|+.++.+++.-.+ ..-..+ .+..+|+.|.++.++- +......+ .+++.|+.+++..+...... .. ..+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4455556555543221 111112 2345666666666542 11111111 23455666666655432221 11 11666
Q ss_pred CCcEEEeeCCcCc-cc----CChhccCCCCccEEeCCCCcCc-ccCchhhccCcCcceeeccccc
Q 036717 248 SVEHLYLQNNALG-GS----IPNTFFRGSALETLDLRDNNFS-GRIPHQINEHSNLRALLLRANY 306 (580)
Q Consensus 248 ~L~~L~l~~n~l~-~~----~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~ 306 (580)
.|+.+.+++|... +. ....-.....|+.+.++++... ...-+.+..+++|+.+++-.++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7777777766432 11 0112233456777777777543 2333445667777777776653
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.95 E-value=1.3e-05 Score=69.63 Aligned_cols=123 Identities=18% Similarity=0.217 Sum_probs=63.4
Q ss_pred cEEEccCCcccCCCCCC-CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccC
Q 036717 35 EVLYLINNSFSGFQLTG-AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTN 113 (580)
Q Consensus 35 ~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (580)
++++|.+.++..+.-.+ -..+...+||++|.+. .++. +..+++|..|.+++|+|+.+.|.--..+++|+.|.|.+|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhhccccccccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 44455544444332111 2334555666666544 2211 113556666666666666555544444566666666666
Q ss_pred cCcc--ccchHHHhCCCCCcEEEcccccCCCcC---CccccCCCCCCEEeccCc
Q 036717 114 NFAG--ELSQSLVTNCFSLIWLDLSNNNFDGQI---FPNYMNLTQLQLLYLDNN 162 (580)
Q Consensus 114 ~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~n 162 (580)
++.. .+.+ ...|+.|++|.+-+|+++... .-.+..+|+|+.||+..-
T Consensus 99 si~~l~dl~p--La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 99 SIQELGDLDP--LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chhhhhhcch--hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5541 1222 345666666666666655321 123456777777777653
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.86 E-value=6.6e-07 Score=85.79 Aligned_cols=295 Identities=20% Similarity=0.161 Sum_probs=180.8
Q ss_pred CCCEEECCCCCCcc-cCchHHhhCCCCCcEEEccCCc-ccCCCC---CCCCCCccEEEccCCC-CCccCChhHhhcCCCC
Q 036717 8 NLKYLDLSHNKLAG-NFPTWLLENNTKLEVLYLINNS-FSGFQL---TGAQHGLLSLDISKNS-FTGELPQNMGIVLQKL 81 (580)
Q Consensus 8 ~L~~L~Ls~n~i~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L 81 (580)
.|+.|.+.+++-.+ .-...+..+++++++|.+.++. +++... ...++.|++|++..|. ++...-..+...|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57888888886332 2334455689999999988885 333211 2378999999999964 5544445566789999
Q ss_pred cEEEcccCc-Cccc-cchhhhcCCCCCEEEcccCcCc-cccchHHHhCCCCCcEEEcccccC-CCcC-CccccCCCCCCE
Q 036717 82 VYMNISKNS-FEGN-IPSSIAKMQGLRFLDVSTNNFA-GELSQSLVTNCFSLIWLDLSNNNF-DGQI-FPNYMNLTQLQL 156 (580)
Q Consensus 82 ~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~ 156 (580)
++|+++++. |++. +...+.+++.++.+.+.+|.=. .+.-...-..+..+..+++.++.. ++.. ...-..+..||.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 999999874 4432 1234455777777777765211 111111223455566777666643 2211 112246788899
Q ss_pred EeccCccc-cccccccc-cCCCCCCEEEcccCC-CCCCCchhh-hcCCCCCEEEcccCcCCC--cCchhccCCCCCcEEE
Q 036717 157 LYLDNNHF-SGKIKDGL-LRSTELMVLDISNNR-LSGHIPSWM-GNFSYLQILSMSKNLLEG--NIPVQFNDLLDLEILN 230 (580)
Q Consensus 157 L~l~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ 230 (580)
|+.+++.- ++..-..+ .+..+|+.+.++.++ ++...-..+ .+++.|+.+++..+.... .+...-.+++.|+++.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 99887643 22222222 567899999999886 332222222 346789999998886431 1222334678899999
Q ss_pred ccCCcCcccc-CCc-----cCCCCCcEEEeeCCcCc-ccCChhccCCCCccEEeCCCCcCccc--CchhhccCcCcceee
Q 036717 231 ISENNLSGSM-IST-----LNLSSVEHLYLQNNALG-GSIPNTFFRGSALETLDLRDNNFSGR--IPHQINEHSNLRALL 301 (580)
Q Consensus 231 l~~n~l~~~~-~~~-----~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~ 301 (580)
++++...... ... -....++.+.++++... +.....+..+++|+.+++.+++-... +...-..+|++++..
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 9987643222 111 15678899999998754 33455677889999999999864311 112224566665544
Q ss_pred c
Q 036717 302 L 302 (580)
Q Consensus 302 l 302 (580)
+
T Consensus 459 ~ 459 (483)
T KOG4341|consen 459 Y 459 (483)
T ss_pred h
Confidence 3
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=2.8e-05 Score=67.59 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=85.2
Q ss_pred ccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEc
Q 036717 56 LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDL 135 (580)
Q Consensus 56 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 135 (580)
=+.+++++.++. .+ ..++....+...+||++|.+... ..|..++.|..|.+++|+|+ .|.+.+..-+++|+.|.|
T Consensus 21 e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccc-ch-hhccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence 355666666554 22 22333455677788888887632 45677888888888888888 676666666778888888
Q ss_pred ccccCCCcC-CccccCCCCCCEEeccCccccccc---cccccCCCCCCEEEcccCC
Q 036717 136 SNNNFDGQI-FPNYMNLTQLQLLYLDNNHFSGKI---KDGLLRSTELMVLDISNNR 187 (580)
Q Consensus 136 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~L~~n~ 187 (580)
.+|++.... ...+..+|.|++|.+-+|.++... --.+..+++|+.||...-.
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 888876321 234567788888888888776332 1235667888888887643
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.75 E-value=5.7e-05 Score=63.50 Aligned_cols=124 Identities=16% Similarity=0.221 Sum_probs=62.8
Q ss_pred chhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCC
Q 036717 96 PSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS 175 (580)
Q Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (580)
..+|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 45677777888888764 455 677777777778888888764 5555556677777788888865 4443445566667
Q ss_pred CCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCC
Q 036717 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDL 226 (580)
Q Consensus 176 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 226 (580)
++|+.+++..+ +.......|.++ +++.+.+.. .+.......|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77887777654 443444556666 777777765 3333455666666555
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.6e-05 Score=85.13 Aligned_cols=195 Identities=25% Similarity=0.331 Sum_probs=129.7
Q ss_pred CCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccC--------CCCC---------CCCCCccEEEccCCCC-Ccc
Q 036717 8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG--------FQLT---------GAQHGLLSLDISKNSF-TGE 69 (580)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~---------~~~~~L~~L~L~~n~l-~~~ 69 (580)
+++..++.+.... .....+..... |+.+.|.+-.... +.+. ..-.+|++||+++... ...
T Consensus 61 ~ltki~l~~~~~~-~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQ-HQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccceecc-hhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 5666777766665 33334443333 8888776542211 1111 1346899999998763 334
Q ss_pred CChhHhhcCCCCcEEEcccCcCcc-ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCC-cCCcc
Q 036717 70 LPQNMGIVLQKLVYMNISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDG-QIFPN 147 (580)
Q Consensus 70 ~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~ 147 (580)
-|..++..+|.|+.|.+++-.+.. .......++++|..||+|+.+++ .+ .+ .+.+++|+.|.+.+=.+.. .....
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~G-IS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SG-ISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HH-HhccccHHHHhccCCCCCchhhHHH
Confidence 567778889999999999877653 23455677899999999999988 44 22 5889999999998877764 22346
Q ss_pred ccCCCCCCEEeccCccccccc------cccccCCCCCCEEEcccCCCCCCCchh-hhcCCCCCEEEc
Q 036717 148 YMNLTQLQLLYLDNNHFSGKI------KDGLLRSTELMVLDISNNRLSGHIPSW-MGNFSYLQILSM 207 (580)
Q Consensus 148 ~~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l 207 (580)
+.++++|+.||+|........ -+.-..+|.|+.||.|+..+....-+. +...++|+.+..
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 678999999999987544221 112245899999999988877543332 233455655543
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00012 Score=72.30 Aligned_cols=74 Identities=15% Similarity=0.289 Sum_probs=48.0
Q ss_pred CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccc-cccccCcccccCCCCCCE
Q 036717 245 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN-YLQGPIPHQLCRLRKLGI 323 (580)
Q Consensus 245 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 323 (580)
.+.++++|++++|.++ .+|. -..+|+.|.+++|.--..+|..+. ++|+.|++++| .+. .+|. .|+.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence 4678888999988877 4452 234688888887543335665442 57888888887 444 3443 4666
Q ss_pred EEeeCCee
Q 036717 324 MDLSHNRL 331 (580)
Q Consensus 324 L~l~~n~l 331 (580)
|+++++..
T Consensus 117 L~L~~n~~ 124 (426)
T PRK15386 117 LEIKGSAT 124 (426)
T ss_pred EEeCCCCC
Confidence 77765543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00028 Score=69.78 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=26.8
Q ss_pred CCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccC
Q 036717 31 NTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKN 89 (580)
Q Consensus 31 l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 89 (580)
+.+++.|++++|.++.++ ....+|+.|.+++|.-...+|..+ .++|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 455666666666555432 333456666665543222344322 235555555555
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=5e-05 Score=81.48 Aligned_cols=150 Identities=21% Similarity=0.291 Sum_probs=103.9
Q ss_pred CCCCEEECCCCC-CcccCchHHhhCCCCCcEEEccCCcccCCCCC---CCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717 7 FNLKYLDLSHNK-LAGNFPTWLLENNTKLEVLYLINNSFSGFQLT---GAQHGLLSLDISKNSFTGELPQNMGIVLQKLV 82 (580)
Q Consensus 7 ~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 82 (580)
.+|+.||+++.. ++..-|..+...+|.|+.|.+++-.+....+. .++++|..||+|+.+++ .+ .++ +.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHH
Confidence 478999999875 33344556677899999999998777654322 47899999999999988 44 444 4789999
Q ss_pred EEEcccCcCcc-ccchhhhcCCCCCEEEcccCcCccc--cch---HHHhCCCCCcEEEcccccCCCcCCccc-cCCCCCC
Q 036717 83 YMNISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGE--LSQ---SLVTNCFSLIWLDLSNNNFDGQIFPNY-MNLTQLQ 155 (580)
Q Consensus 83 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~--~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 155 (580)
+|.+.+=.+.. ..-..+.++++|++||+|....... +.. +....+|+|+.||.+++.+.....+.+ ..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 99888776653 3335677899999999998755421 111 112457899999999888775443332 2344555
Q ss_pred EEec
Q 036717 156 LLYL 159 (580)
Q Consensus 156 ~L~l 159 (580)
.+.+
T Consensus 279 ~i~~ 282 (699)
T KOG3665|consen 279 QIAA 282 (699)
T ss_pred hhhh
Confidence 4443
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.27 E-value=6.1e-05 Score=79.30 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=5.3
Q ss_pred ccEEeCCCCc
Q 036717 273 LETLDLRDNN 282 (580)
Q Consensus 273 L~~L~l~~n~ 282 (580)
++.|+++.+.
T Consensus 403 l~~L~l~~~~ 412 (482)
T KOG1947|consen 403 LRVLNLSDCR 412 (482)
T ss_pred cceEecccCc
Confidence 5555555554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.20 E-value=0.00018 Score=65.47 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=46.1
Q ss_pred CCCCCcEEEccCCcccCCCCCCCCCCccEEEccCC--CCCccCChhHhhcCCCCcEEEcccCcCccc-cchhhhcCCCCC
Q 036717 30 NNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKN--SFTGELPQNMGIVLQKLVYMNISKNSFEGN-IPSSIAKMQGLR 106 (580)
Q Consensus 30 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 106 (580)
.+..|+.|.+.+..++...-...+++|+.|+++.| ++.+.++.-+ ..+|+|+++++++|++... --..+..+++|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchh
Confidence 45556666666666655443445666677777766 4444443333 2456666666666666520 011233445555
Q ss_pred EEEcccCcCc
Q 036717 107 FLDVSTNNFA 116 (580)
Q Consensus 107 ~L~L~~n~l~ 116 (580)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 5555555443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=4.4e-05 Score=69.58 Aligned_cols=101 Identities=20% Similarity=0.154 Sum_probs=55.3
Q ss_pred CCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCcccc-chhhhcCCCCCEEE
Q 036717 31 NTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNI-PSSIAKMQGLRFLD 109 (580)
Q Consensus 31 l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 109 (580)
+.+.++|++.+|.++++++-..++.|+.|.||-|.|+ .+... ..|++|+.|+|..|.|.... -..+.++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIs-sL~pl--~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKIS-SLAPL--QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccc-cchhH--HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4455666666666666655556666666666666665 33221 24666666666666665321 12345566666666
Q ss_pred cccCcCccccch----HHHhCCCCCcEEE
Q 036717 110 VSTNNFAGELSQ----SLVTNCFSLIWLD 134 (580)
Q Consensus 110 L~~n~l~~~~~~----~~~~~l~~L~~L~ 134 (580)
|..|.-.+..+. ..+.-+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 666655443332 2234456666554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.00011 Score=67.06 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=39.7
Q ss_pred CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717 55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD 134 (580)
Q Consensus 55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 134 (580)
+.+.|++-+|.+. .| .+...++.|++|.|+-|+|+.. ..+..|++|+.|+|..|.|..--.-..+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4445555555554 22 2233455566666666655533 23455555555555555554222222234445555555
Q ss_pred cccccCC
Q 036717 135 LSNNNFD 141 (580)
Q Consensus 135 L~~n~l~ 141 (580)
|..|.-.
T Consensus 95 L~ENPCc 101 (388)
T KOG2123|consen 95 LDENPCC 101 (388)
T ss_pred hccCCcc
Confidence 5544443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.66 E-value=0.00037 Score=73.31 Aligned_cols=189 Identities=22% Similarity=0.056 Sum_probs=115.8
Q ss_pred ccCCCCCEEECCCC-CCcccCchHHhhCCCCCcEEEccCC-cc-cCC-----CCCCCCCCccEEEccCCC-CCccCChhH
Q 036717 4 RHQFNLKYLDLSHN-KLAGNFPTWLLENNTKLEVLYLINN-SF-SGF-----QLTGAQHGLLSLDISKNS-FTGELPQNM 74 (580)
Q Consensus 4 ~~~~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~n-~l-~~~-----~~~~~~~~L~~L~L~~n~-l~~~~~~~~ 74 (580)
..++.|+.|.+.++ .++..--..+...+++|+.|+++++ .. ... .....+++|+.|+++.+. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 45788999999988 4542222344568999999999973 21 111 112366899999999998 665444555
Q ss_pred hhcCCCCcEEEcccCc-Cccccch-hhhcCCCCCEEEcccCcCcc-ccchHHHhCCCCCcEEEcccccCCCcCCccccCC
Q 036717 75 GIVLQKLVYMNISKNS-FEGNIPS-SIAKMQGLRFLDVSTNNFAG-ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNL 151 (580)
Q Consensus 75 ~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 151 (580)
...|++|++|.+.++. ++...-. ....++.|++|+++.+...+ ..-.....++++++.|.+....- +
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c 334 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C 334 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Confidence 5568999999988777 5543323 34458889999999886542 21222345678877766543321 4
Q ss_pred CCCCEEeccCcccc---ccccccccCCCCCCEEEcccCCCCCCC-chhhhcCCCC
Q 036717 152 TQLQLLYLDNNHFS---GKIKDGLLRSTELMVLDISNNRLSGHI-PSWMGNFSYL 202 (580)
Q Consensus 152 ~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L 202 (580)
+.++.+.+....-. .........+++++.+.+..+...... ...+.+++.|
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 44555554433221 122223466778888888777744322 2344555555
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.0014 Score=59.79 Aligned_cols=40 Identities=28% Similarity=0.452 Sum_probs=18.1
Q ss_pred CCCCCCEEEcccC--CCCCCCchhhhcCCCCCEEEcccCcCC
Q 036717 174 RSTELMVLDISNN--RLSGHIPSWMGNFSYLQILSMSKNLLE 213 (580)
Q Consensus 174 ~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~ 213 (580)
.+++|++|.++.| ++.+-++.....+++|+++++++|++.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3445555555555 333222322333455555555555544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.02 E-value=0.0028 Score=34.29 Aligned_cols=12 Identities=58% Similarity=0.753 Sum_probs=5.4
Q ss_pred CCEEECCCCccc
Q 036717 460 IESLDLSHNKLN 471 (580)
Q Consensus 460 L~~L~Ls~N~l~ 471 (580)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.82 E-value=0.0038 Score=33.75 Aligned_cols=20 Identities=60% Similarity=0.717 Sum_probs=11.4
Q ss_pred CCeEecccCcceecccccccC
Q 036717 436 IHGLNLSYNFLSGSIPESFSN 456 (580)
Q Consensus 436 L~~L~Ls~N~l~~~~p~~~~~ 456 (580)
|++|||++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666666 45544543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.94 E-value=0.00069 Score=69.68 Aligned_cols=109 Identities=20% Similarity=0.184 Sum_probs=57.0
Q ss_pred ccEEEccCCCCCccCChhHh---hcCCCCcEEEcccCcCccccchhhh----cC-CCCCEEEcccCcCcccc----chHH
Q 036717 56 LLSLDISKNSFTGELPQNMG---IVLQKLVYMNISKNSFEGNIPSSIA----KM-QGLRFLDVSTNNFAGEL----SQSL 123 (580)
Q Consensus 56 L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~----~~~~ 123 (580)
+..+.|.+|.+.......+. ...+.|..|++++|.+.+..-..+. .. ..+++|++..|.+++.. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777776644333332 2345677777777776633222222 22 44666777777666432 2222
Q ss_pred HhCCCCCcEEEcccccCCC----cCCcc----ccCCCCCCEEeccCcccc
Q 036717 124 VTNCFSLIWLDLSNNNFDG----QIFPN----YMNLTQLQLLYLDNNHFS 165 (580)
Q Consensus 124 ~~~l~~L~~L~L~~n~l~~----~~~~~----~~~l~~L~~L~l~~n~l~ 165 (580)
.....++.++++.|.+.. ..+.. +....++++|.+.++.++
T Consensus 169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 235667777777776631 11111 223445555666555554
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.70 E-value=0.0029 Score=56.55 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=70.3
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 488 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 488 (580)
....+.||++.|++. .....|+-++.|..|+++.|++. ..|+.++.+..+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 566788999999887 55566788888899999999988 67888888888889998888887 6788888999999999
Q ss_pred ccCCccc
Q 036717 489 VSYNNLS 495 (580)
Q Consensus 489 Ls~N~l~ 495 (580)
+-.|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9888764
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.69 E-value=0.039 Score=27.56 Aligned_cols=13 Identities=62% Similarity=0.917 Sum_probs=6.0
Q ss_pred CCCEEECCCCCCc
Q 036717 8 NLKYLDLSHNKLA 20 (580)
Q Consensus 8 ~L~~L~Ls~n~i~ 20 (580)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5566666666554
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.41 E-value=0.0012 Score=67.98 Aligned_cols=186 Identities=20% Similarity=0.236 Sum_probs=95.4
Q ss_pred CcEEEcccCcCccccch----hhhcCCCCCEEEcccCcCccccchHHHhCC----CCCcEEEcccccCCCcCCccccCCC
Q 036717 81 LVYMNISKNSFEGNIPS----SIAKMQGLRFLDVSTNNFAGELSQSLVTNC----FSLIWLDLSNNNFDGQIFPNYMNLT 152 (580)
Q Consensus 81 L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~ 152 (580)
+..+.+.+|.+...... .+...+.|+.|++++|.+.+.--..+...+ ..+++|++..|.++.....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~------ 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA------ 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH------
Confidence 55666666666543332 334456666666666666532222111111 2334444444444321111
Q ss_pred CCCEEeccCccccccccccccCCCCCCEEEcccCCCCC----CCchh----hhcCCCCCEEEcccCcCCCc----Cchhc
Q 036717 153 QLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSG----HIPSW----MGNFSYLQILSMSKNLLEGN----IPVQF 220 (580)
Q Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~----~~~l~~L~~L~l~~n~l~~~----~~~~~ 220 (580)
.+...+.....++.++++.|.+.. .++.. +....++++|.+++|.++.. ....+
T Consensus 163 --------------~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l 228 (478)
T KOG4308|consen 163 --------------PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVL 228 (478)
T ss_pred --------------HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHH
Confidence 122223334444555555544421 11122 22355666677766665521 11233
Q ss_pred cCCCC-CcEEEccCCcCccccCCcc-----CC-CCCcEEEeeCCcCcccC----ChhccCCCCccEEeCCCCcCccc
Q 036717 221 NDLLD-LEILNISENNLSGSMISTL-----NL-SSVEHLYLQNNALGGSI----PNTFFRGSALETLDLRDNNFSGR 286 (580)
Q Consensus 221 ~~l~~-L~~L~l~~n~l~~~~~~~~-----~~-~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~ 286 (580)
...+. +..+++..|.+.+...... .+ ..++.++++.|.++... ...+..++.++.+.++.|.+...
T Consensus 229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 34444 5567777777765422111 23 56788889998887543 34556678899999999988743
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.07 E-value=0.1 Score=29.39 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=18.5
Q ss_pred CCCCCEEECCCCCCcccCchHHhh
Q 036717 6 QFNLKYLDLSHNKLAGNFPTWLLE 29 (580)
Q Consensus 6 ~~~L~~L~Ls~n~i~~~~~~~~~~ 29 (580)
+++|+.|+|++|+|+ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467889999999888 88887763
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.07 E-value=0.1 Score=29.39 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=18.5
Q ss_pred CCCCCEEECCCCCCcccCchHHhh
Q 036717 6 QFNLKYLDLSHNKLAGNFPTWLLE 29 (580)
Q Consensus 6 ~~~L~~L~Ls~n~i~~~~~~~~~~ 29 (580)
+++|+.|+|++|+|+ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467889999999888 88887763
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.65 E-value=0.098 Score=29.49 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=9.6
Q ss_pred ccCCEEECCCCccccc
Q 036717 458 KMIESLDLSHNKLNGQ 473 (580)
Q Consensus 458 ~~L~~L~Ls~N~l~~~ 473 (580)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666643
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.65 E-value=0.098 Score=29.49 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=9.6
Q ss_pred ccCCEEECCCCccccc
Q 036717 458 KMIESLDLSHNKLNGQ 473 (580)
Q Consensus 458 ~~L~~L~Ls~N~l~~~ 473 (580)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666643
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.86 E-value=0.014 Score=52.32 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=39.6
Q ss_pred cCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717 77 VLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL 156 (580)
Q Consensus 77 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 156 (580)
.+.+.+.||++.|++. ..-..|..++.|..|+++.|++. ..|.++ .....++.+++.+|..+ ..|.++...+++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 3455555566555554 22334444555555555555554 444433 33444444444444443 33444444444444
Q ss_pred EeccCcc
Q 036717 157 LYLDNNH 163 (580)
Q Consensus 157 L~l~~n~ 163 (580)
+++-.+.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 4444443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.38 E-value=0.15 Score=28.08 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=4.6
Q ss_pred CCcEEEcccCcCc
Q 036717 80 KLVYMNISKNSFE 92 (580)
Q Consensus 80 ~L~~L~l~~n~l~ 92 (580)
+|++|++++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.50 E-value=0.12 Score=45.63 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=17.3
Q ss_pred CcEEEcccCcCccccchhhhcCCCCCEEEcccC
Q 036717 81 LVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTN 113 (580)
Q Consensus 81 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (580)
++.+|-++..|..+.-+.+.+++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 445555555555444455555555555555444
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=86.27 E-value=0.43 Score=58.11 Aligned_cols=37 Identities=27% Similarity=0.221 Sum_probs=33.6
Q ss_pred ECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717 464 DLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 464 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 500 (580)
||++|+|+.+.+..|..+++|+.|+|++|++.|.|.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 6899999988888999999999999999999999975
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.75 E-value=0.14 Score=45.22 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=16.1
Q ss_pred CCccEEeCCCC-cCcccCchhhccCcCcceeecc
Q 036717 271 SALETLDLRDN-NFSGRIPHQINEHSNLRALLLR 303 (580)
Q Consensus 271 ~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~ 303 (580)
++|+.|++++| +|+...-.++..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 34555555544 3443333444555555555444
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.89 E-value=1.5 Score=24.73 Aligned_cols=14 Identities=50% Similarity=0.743 Sum_probs=8.9
Q ss_pred ccCCEEECCCCccc
Q 036717 458 KMIESLDLSHNKLN 471 (580)
Q Consensus 458 ~~L~~L~Ls~N~l~ 471 (580)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.76 E-value=1.9 Score=24.23 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=7.4
Q ss_pred cCCEEECCCCccc
Q 036717 459 MIESLDLSHNKLN 471 (580)
Q Consensus 459 ~L~~L~Ls~N~l~ 471 (580)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.45 E-value=17 Score=36.85 Aligned_cols=61 Identities=26% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCcEEEcccCcCccccchhhhcC---CCCCEEEcccCcCccc--cchHHHhCCCCCcEEEcccccC
Q 036717 80 KLVYMNISKNSFEGNIPSSIAKM---QGLRFLDVSTNNFAGE--LSQSLVTNCFSLIWLDLSNNNF 140 (580)
Q Consensus 80 ~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~L~~n~l 140 (580)
.+.+++++.|.....+|.....+ ..++.++.+...+.-. ....+++.-+++...+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 45667777776665555543332 2355666555433311 1111223334566666665544
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.45 E-value=21 Score=36.26 Aligned_cols=105 Identities=20% Similarity=0.134 Sum_probs=48.4
Q ss_pred CCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcC------CCCCEEEcccCcCccccchHHHhC-
Q 036717 54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKM------QGLRFLDVSTNNFAGELSQSLVTN- 126 (580)
Q Consensus 54 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~L~~n~l~~~~~~~~~~~- 126 (580)
+.++++|++.|.+..+.|-.+.. ..--+.++.+..+.. .|..+ ..+++++++.|.....+|..+-..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~---p~~pl~lr~c~lssk---fis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a 238 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQ---PGNPLSLRVCELSSK---FISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKA 238 (553)
T ss_pred chhhhhccCCCcccccCCccccC---CCCccchhhhhhhhh---HHHHhhhhhccccccccccccCCCCccchhHHHHhh
Confidence 45666667666665444433211 111144555544421 11111 236677777776666666543111
Q ss_pred -CCCCcEEEcccccCCC---cCCccccCCCCCCEEeccCccc
Q 036717 127 -CFSLIWLDLSNNNFDG---QIFPNYMNLTQLQLLYLDNNHF 164 (580)
Q Consensus 127 -l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l 164 (580)
-..++.++.+...+.- ..+-.+..-++++..+++.|..
T Consensus 239 ~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 239 GTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 1235555555544321 1111223345666666665543
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.98 E-value=2.8 Score=24.06 Aligned_cols=14 Identities=57% Similarity=0.683 Sum_probs=10.1
Q ss_pred CCCCEEECCCCCCc
Q 036717 7 FNLKYLDLSHNKLA 20 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~ 20 (580)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 56777777777775
No 91
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=69.47 E-value=12 Score=23.17 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 036717 550 VAFYWSFVASYVTLMLGLLAILW 572 (580)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~ 572 (580)
.++..+++++++++++.++.+.+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaC 28 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYAC 28 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666555555443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.82 E-value=5.1 Score=41.30 Aligned_cols=63 Identities=24% Similarity=0.306 Sum_probs=35.7
Q ss_pred CCCCccEEEccCCCCCccCC--hhHhhcCCCCcEEEcccC--cCccccchhhhcC--CCCCEEEcccCcCcc
Q 036717 52 AQHGLLSLDISKNSFTGELP--QNMGIVLQKLVYMNISKN--SFEGNIPSSIAKM--QGLRFLDVSTNNFAG 117 (580)
Q Consensus 52 ~~~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l--~~L~~L~L~~n~l~~ 117 (580)
+.+.+..++|++|++. .+. ..+....|+|+.|+|++| .+. ...++.++ ..|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 5566666677777654 221 223345677777777777 333 22233333 336777777777754
No 93
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=62.47 E-value=7.2 Score=31.79 Aligned_cols=12 Identities=8% Similarity=0.401 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 036717 550 VAFYWSFVASYV 561 (580)
Q Consensus 550 ~~~~~~~~~~~~ 561 (580)
.++++++++|++
T Consensus 67 ~~Ii~gv~aGvI 78 (122)
T PF01102_consen 67 IGIIFGVMAGVI 78 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehhHHHHHHHH
Confidence 334444444443
No 94
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=59.50 E-value=7.3 Score=29.47 Aligned_cols=32 Identities=3% Similarity=-0.023 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 036717 547 VDMVAFYWSFVASYVTLMLGLLAILWINPYWR 578 (580)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr 578 (580)
....|.|+..+.++++++++++.+++.+.+|+
T Consensus 38 ~~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 38 FVAYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred HHhhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 33567788888888888888777888777775
No 95
>PF15102 TMEM154: TMEM154 protein family
Probab=55.31 E-value=4.4 Score=33.83 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhcccccC
Q 036717 559 SYVTLMLGLLAILWINPYWRR 579 (580)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~wr~ 579 (580)
.++++++++++++.+.+|||.
T Consensus 67 LLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 67 LLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHheeEEeeccc
Confidence 333444444555555566764
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.36 E-value=10 Score=39.18 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=5.3
Q ss_pred cceeeccccccc
Q 036717 297 LRALLLRANYLQ 308 (580)
Q Consensus 297 L~~L~l~~n~l~ 308 (580)
|++|.+.+|++.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 444444444443
No 97
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=43.67 E-value=9.9 Score=33.97 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036717 551 AFYWSFVASYVTLMLGLLAIL 571 (580)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~ 571 (580)
.+++++++|++.++++++++.
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v 58 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVV 58 (221)
T ss_pred eeeeeeecchhhhHHHHHHHH
Confidence 344455555554444443333
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.23 E-value=50 Score=27.01 Aligned_cols=28 Identities=4% Similarity=0.024 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc
Q 036717 551 AFYWSFVASYVTLMLGLLAILWINPYWR 578 (580)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~wr 578 (580)
..++++++|++.++++++.+++|..++|
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888887777666554433
No 99
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=41.72 E-value=34 Score=25.22 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 036717 555 SFVASYVTLMLGLLAILWI 573 (580)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~ 573 (580)
+++++.++++.+++++++.
T Consensus 5 ~~~~g~~~ll~~v~~~~~~ 23 (75)
T PF14575_consen 5 SIIVGVLLLLVLVIIVIVC 23 (75)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHhheeEEEE
Confidence 3344444443333333333
No 100
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=41.55 E-value=57 Score=21.94 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 036717 551 AFYWSFVASYVTLMLGLLAILWINPY 576 (580)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (580)
++++.+.++.+++++++++++|-.++
T Consensus 3 il~~LIpiSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 3 ILTILIPISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35566677777777778888886554
No 101
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=39.45 E-value=9.8 Score=35.43 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccC
Q 036717 555 SFVASYVTLMLGLLAILWINPYWRR 579 (580)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~wr~ 579 (580)
..+.+++++++.|.+++||++|||.
T Consensus 230 lLVPSiILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 230 LLVPSIILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp -------------------------
T ss_pred ccccchhhhhhhccceeeecccccc
Confidence 4556667777788889999887774
No 102
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=36.74 E-value=58 Score=21.25 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 036717 552 FYWSFVASYVTLMLGLLAILWINPY 576 (580)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (580)
+++.+.++.+++++++++++|-.++
T Consensus 3 l~~lip~sl~l~~~~l~~f~Wavk~ 27 (45)
T PF03597_consen 3 LYILIPVSLILGLIALAAFLWAVKS 27 (45)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4555666777777777777776543
No 103
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.28 E-value=26 Score=19.41 Aligned_cols=15 Identities=40% Similarity=0.375 Sum_probs=8.8
Q ss_pred CCCCCEEECCCCC-Cc
Q 036717 6 QFNLKYLDLSHNK-LA 20 (580)
Q Consensus 6 ~~~L~~L~Ls~n~-i~ 20 (580)
|++|+.|+++++. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4566666666663 44
No 104
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=31.47 E-value=84 Score=23.17 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=6.4
Q ss_pred HHHHHhhcccccC
Q 036717 567 LLAILWINPYWRR 579 (580)
Q Consensus 567 ~~~~~~~~~~wr~ 579 (580)
+..++-|+.+||.
T Consensus 20 ~WL~lHY~sk~~~ 32 (75)
T PF06667_consen 20 IWLILHYRSKWKS 32 (75)
T ss_pred HHHHHHHHHhccc
Confidence 3334445556653
No 105
>PTZ00370 STEVOR; Provisional
Probab=28.26 E-value=44 Score=31.55 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 036717 555 SFVASYVTLMLGLLAILWI 573 (580)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~ 573 (580)
++++.+.+++.++++++|+
T Consensus 258 giaalvllil~vvliilYi 276 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYI 276 (296)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444333333333333333
No 106
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=27.79 E-value=45 Score=31.41 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 036717 555 SFVASYVTL 563 (580)
Q Consensus 555 ~~~~~~~~~ 563 (580)
++++.+.++
T Consensus 262 giaalvlli 270 (295)
T TIGR01478 262 GIAALVLII 270 (295)
T ss_pred HHHHHHHHH
Confidence 333333333
No 107
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.77 E-value=47 Score=41.83 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=29.7
Q ss_pred ECCCCCCcccCchHHhhCCCCCcEEEccCCcccC
Q 036717 13 DLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG 46 (580)
Q Consensus 13 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~ 46 (580)
||++|+|+ .+|...|..+++|++|+|++|.+..
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCcccc
Confidence 68999999 9999999999999999999997664
No 108
>PRK14762 membrane protein; Provisional
Probab=24.39 E-value=1.4e+02 Score=16.51 Aligned_cols=18 Identities=11% Similarity=0.447 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036717 553 YWSFVASYVTLMLGLLAI 570 (580)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~ 570 (580)
.|.+++.|.++++++..+
T Consensus 5 lw~i~iifligllvvtgv 22 (27)
T PRK14762 5 LWAVLIIFLIGLLVVTGV 22 (27)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555444
No 109
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=23.69 E-value=1.4e+02 Score=22.09 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=5.5
Q ss_pred HHHHhhcccccC
Q 036717 568 LAILWINPYWRR 579 (580)
Q Consensus 568 ~~~~~~~~~wr~ 579 (580)
..++-|+.+|+.
T Consensus 21 wl~lHY~~k~~~ 32 (75)
T TIGR02976 21 WLILHYRSKRKT 32 (75)
T ss_pred HHHHHHHhhhcc
Confidence 334445545553
No 110
>PHA02650 hypothetical protein; Provisional
Probab=22.89 E-value=1.2e+02 Score=22.29 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 036717 559 SYVTLMLGLLAILWINPYWR 578 (580)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~wr 578 (580)
.+++++++++.++|.|-.||
T Consensus 56 i~~v~i~~l~~flYLK~~~r 75 (81)
T PHA02650 56 IFSLIIVALFSFFVFKGYTR 75 (81)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34444455566666666666
No 111
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=22.10 E-value=30 Score=28.08 Aligned_cols=14 Identities=29% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHhhcccccC
Q 036717 566 GLLAILWINPYWRR 579 (580)
Q Consensus 566 ~~~~~~~~~~~wr~ 579 (580)
++..++|+++.+|+
T Consensus 94 llsg~lv~rrcrrr 107 (129)
T PF12191_consen 94 LLSGFLVWRRCRRR 107 (129)
T ss_dssp --------------
T ss_pred HHHHHHHHhhhhcc
Confidence 33445555444443
No 112
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=22.08 E-value=97 Score=21.33 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 036717 553 YWSFVASYVTLMLGLLAILWINPY 576 (580)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~ 576 (580)
++.+.++++++++++.+++|-.+.
T Consensus 5 ~~Lipvsi~l~~v~l~~flWavks 28 (58)
T COG3197 5 YILIPVSILLGAVGLGAFLWAVKS 28 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHHhccc
Confidence 445566667777777777776543
No 113
>PHA02844 putative transmembrane protein; Provisional
Probab=21.30 E-value=2.3e+02 Score=20.67 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhccccc
Q 036717 560 YVTLMLGLLAILWINPYWR 578 (580)
Q Consensus 560 ~~~~~~~~~~~~~~~~~wr 578 (580)
+++++++++.++|.|--||
T Consensus 56 ~~v~~~~~~~flYLK~~~r 74 (75)
T PHA02844 56 IFVVFATFLTFLYLKAVPR 74 (75)
T ss_pred HHHHHHHHHHHHHHheecC
Confidence 3334445566666666665
No 114
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=20.88 E-value=89 Score=30.23 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 036717 553 YWSFVASYVTL 563 (580)
Q Consensus 553 ~~~~~~~~~~~ 563 (580)
+.++++.++++
T Consensus 259 ~aSiiaIliIV 269 (299)
T PF02009_consen 259 IASIIAILIIV 269 (299)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
Done!