Query 036717
Match_columns 580
No_of_seqs 542 out of 4622
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 07:32:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-64 5.9E-69 557.4 37.3 522 3-529 219-750 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-56 4.7E-61 494.5 39.6 484 4-516 148-715 (768)
3 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-52 1.3E-56 463.8 34.3 484 7-520 24-562 (844)
4 3t6q_A CD180 antigen; protein- 100.0 3.6E-51 1.2E-55 441.4 36.9 471 7-500 33-565 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-50 6.5E-55 441.6 39.0 490 2-500 44-627 (680)
6 3t6q_A CD180 antigen; protein- 100.0 4.2E-50 1.4E-54 433.1 37.1 445 2-475 52-564 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-49 5.4E-54 434.3 39.3 465 2-475 68-626 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-49 9.4E-54 426.7 34.5 434 7-495 32-534 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 6.3E-49 2.2E-53 437.8 32.4 497 2-533 43-594 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-48 6.4E-53 420.2 31.9 445 2-501 51-564 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 5.1E-48 1.8E-52 413.9 33.4 444 7-504 28-540 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 3.4E-48 1.2E-52 415.3 30.8 422 2-476 47-536 (570)
13 4eco_A Uncharacterized protein 100.0 2.5E-49 8.7E-54 426.7 18.2 442 7-519 81-601 (636)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-46 4.8E-51 400.8 26.1 445 7-507 26-522 (549)
15 4eco_A Uncharacterized protein 100.0 5.3E-48 1.8E-52 416.4 15.1 415 2-498 100-603 (636)
16 4ecn_A Leucine-rich repeat pro 100.0 4.7E-46 1.6E-50 407.4 29.1 412 7-498 323-843 (876)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-45 4.4E-50 390.5 23.8 412 7-500 21-486 (520)
18 3v47_A TOLL-like receptor 5B a 100.0 2.4E-44 8.1E-49 374.4 27.3 379 57-507 13-420 (455)
19 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-44 7E-49 384.0 26.6 478 6-521 4-513 (549)
20 4ecn_A Leucine-rich repeat pro 100.0 3.6E-44 1.2E-48 392.5 28.5 361 89-518 435-840 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-44 5.3E-49 382.2 24.6 449 10-520 3-483 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 1E-43 3.4E-48 385.8 29.9 449 8-507 53-591 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-43 1E-47 375.5 25.5 440 6-529 30-546 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 1.2E-41 4.2E-46 353.9 26.3 381 10-475 13-412 (455)
25 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-40 7.6E-45 359.5 34.9 457 10-521 34-583 (635)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.9E-40 1.7E-44 350.6 27.9 386 7-475 52-514 (562)
27 2id5_A Lingo-1, leucine rich r 100.0 2.4E-39 8E-44 338.5 28.1 345 106-522 14-360 (477)
28 1jl5_A Outer protein YOPM; leu 100.0 5.2E-39 1.8E-43 331.3 26.1 375 5-500 9-416 (454)
29 1o6v_A Internalin A; bacterial 100.0 6.2E-38 2.1E-42 326.3 34.5 344 54-496 46-389 (466)
30 1o6v_A Internalin A; bacterial 100.0 1.6E-37 5.3E-42 323.3 35.2 357 17-473 34-390 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-38 7.9E-43 326.8 26.7 354 30-501 40-393 (457)
32 1jl5_A Outer protein YOPM; leu 100.0 1.3E-38 4.4E-43 328.4 23.2 375 2-500 29-434 (454)
33 2id5_A Lingo-1, leucine rich r 100.0 4.4E-37 1.5E-41 321.3 27.9 196 36-234 15-210 (477)
34 3o6n_A APL1; leucine-rich repe 100.0 6.5E-37 2.2E-41 311.3 27.7 333 103-521 45-377 (390)
35 3oja_B Anopheles plasmodium-re 100.0 2E-36 6.8E-41 324.4 27.7 334 103-522 51-384 (597)
36 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-35 3.8E-40 306.7 27.6 358 3-495 38-403 (457)
37 3o6n_A APL1; leucine-rich repe 100.0 5.1E-35 1.8E-39 297.3 26.1 334 78-498 44-377 (390)
38 4fmz_A Internalin; leucine ric 100.0 2.2E-34 7.7E-39 288.0 29.8 305 77-495 42-346 (347)
39 4fmz_A Internalin; leucine ric 100.0 3E-34 1E-38 287.0 30.3 306 4-332 41-346 (347)
40 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-35 9.5E-40 289.2 21.1 259 176-527 50-312 (313)
41 1z7x_W Ribonuclease inhibitor; 100.0 1E-36 3.4E-41 317.5 5.4 379 54-495 3-440 (461)
42 3oja_B Anopheles plasmodium-re 100.0 1.2E-33 4.1E-38 302.9 28.7 313 78-475 50-362 (597)
43 1ogq_A PGIP-2, polygalacturona 100.0 7.3E-34 2.5E-38 279.1 17.8 252 152-496 50-305 (313)
44 1z7x_W Ribonuclease inhibitor; 100.0 5.3E-36 1.8E-40 312.0 0.6 392 6-478 2-447 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-32 8E-37 271.3 24.7 290 104-493 34-331 (332)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-32 5.5E-37 272.5 22.8 298 22-330 18-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 8.3E-32 2.8E-36 267.2 25.9 289 32-330 31-330 (330)
48 1xku_A Decorin; proteoglycan, 100.0 1.1E-31 3.9E-36 266.1 26.7 291 104-493 32-330 (330)
49 3ogk_B Coronatine-insensitive 100.0 8.7E-33 3E-37 297.1 6.9 380 52-496 110-527 (592)
50 3ogk_B Coronatine-insensitive 100.0 2.7E-32 9.3E-37 293.3 8.4 421 3-493 69-549 (592)
51 2z66_A Variable lymphocyte rec 100.0 1.8E-30 6.1E-35 254.7 16.1 232 201-500 29-266 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 4.7E-30 1.6E-34 257.0 18.8 288 102-504 30-323 (353)
53 2z80_A TOLL-like receptor 2, v 100.0 9.6E-30 3.3E-34 254.7 19.4 284 30-336 29-318 (353)
54 3zyj_A Leucine-rich repeat-con 100.0 1.2E-28 4.2E-33 254.2 23.8 231 201-500 65-297 (440)
55 2z66_A Variable lymphocyte rec 100.0 4.5E-29 1.5E-33 244.7 18.8 228 54-284 28-261 (306)
56 3zyi_A Leucine-rich repeat-con 100.0 1.6E-28 5.3E-33 254.4 23.9 231 201-500 76-308 (452)
57 2p1m_B Transport inhibitor res 100.0 2.9E-31 1E-35 285.4 1.5 312 11-327 47-405 (594)
58 1ozn_A Reticulon 4 receptor; N 100.0 1E-28 3.5E-33 239.5 18.3 229 203-501 14-244 (285)
59 1ozn_A Reticulon 4 receptor; N 100.0 6.1E-28 2.1E-32 234.0 21.5 207 128-334 32-240 (285)
60 4fcg_A Uncharacterized protein 100.0 5.4E-28 1.8E-32 238.7 21.0 235 175-495 80-314 (328)
61 3o53_A Protein LRIM1, AGAP0063 100.0 1.7E-29 5.9E-34 248.6 9.0 266 154-499 12-280 (317)
62 2p1m_B Transport inhibitor res 100.0 4.5E-30 1.5E-34 276.1 2.4 423 3-495 62-544 (594)
63 3zyj_A Leucine-rich repeat-con 100.0 3.9E-27 1.3E-31 242.9 24.1 249 55-333 44-293 (440)
64 4fcg_A Uncharacterized protein 100.0 2.3E-27 7.9E-32 234.1 20.9 222 79-306 81-312 (328)
65 3zyi_A Leucine-rich repeat-con 100.0 3.9E-27 1.3E-31 243.8 23.4 251 55-334 55-305 (452)
66 3o53_A Protein LRIM1, AGAP0063 99.9 5.7E-29 1.9E-33 244.9 6.1 254 59-327 15-270 (317)
67 3oja_A Leucine-rich immune mol 99.9 4.2E-28 1.4E-32 252.4 11.6 236 175-490 33-270 (487)
68 3g06_A SSPH2 (leucine-rich rep 99.9 3.3E-26 1.1E-30 242.8 25.9 267 8-342 41-307 (622)
69 1wwl_A Monocyte differentiatio 99.9 2.7E-28 9.2E-33 239.5 8.3 245 53-308 42-309 (312)
70 1wwl_A Monocyte differentiatio 99.9 5.7E-28 2E-32 237.2 9.5 248 29-285 40-310 (312)
71 3g06_A SSPH2 (leucine-rich rep 99.9 2E-25 6.7E-30 236.9 29.4 260 55-366 41-300 (622)
72 2z62_A TOLL-like receptor 4, v 99.9 2.5E-26 8.6E-31 221.5 19.7 215 225-507 29-249 (276)
73 2o6q_A Variable lymphocyte rec 99.9 2.6E-25 9E-30 213.5 19.5 211 225-504 17-227 (270)
74 2z62_A TOLL-like receptor 4, v 99.9 3.6E-25 1.2E-29 213.4 20.5 223 58-285 11-238 (276)
75 3oja_A Leucine-rich immune mol 99.9 1.9E-26 6.4E-31 240.0 11.7 235 54-303 34-270 (487)
76 1p9a_G Platelet glycoprotein I 99.9 2.9E-24 9.9E-29 207.9 19.4 207 220-499 6-212 (290)
77 2o6q_A Variable lymphocyte rec 99.9 1.3E-23 4.4E-28 201.7 21.4 180 55-239 17-196 (270)
78 3rfs_A Internalin B, repeat mo 99.9 3.4E-24 1.1E-28 205.9 15.5 221 10-244 22-242 (272)
79 3rfs_A Internalin B, repeat mo 99.9 7.5E-24 2.6E-28 203.4 17.0 206 100-317 38-244 (272)
80 1p9a_G Platelet glycoprotein I 99.9 6.1E-23 2.1E-27 198.6 21.0 199 53-259 9-207 (290)
81 3goz_A Leucine-rich repeat-con 99.9 7.3E-25 2.5E-29 219.8 7.6 177 156-332 2-209 (362)
82 3m19_A Variable lymphocyte rec 99.9 9.3E-24 3.2E-28 200.3 14.1 212 248-530 15-232 (251)
83 3goz_A Leucine-rich repeat-con 99.9 2.9E-24 9.8E-29 215.5 8.0 262 58-340 2-305 (362)
84 2ca6_A RAN GTPase-activating p 99.9 8.1E-25 2.8E-29 221.7 3.5 193 245-499 92-320 (386)
85 2ast_B S-phase kinase-associat 99.9 8E-24 2.7E-28 210.3 8.7 249 178-501 49-312 (336)
86 2ca6_A RAN GTPase-activating p 99.9 3.4E-24 1.2E-28 217.1 5.8 246 70-336 24-320 (386)
87 2ast_B S-phase kinase-associat 99.9 2.5E-23 8.5E-28 206.7 10.9 222 8-234 48-282 (336)
88 2xwt_C Thyrotropin receptor; s 99.9 1.2E-22 4.2E-27 191.2 13.8 195 80-281 32-236 (239)
89 4glp_A Monocyte differentiatio 99.9 1.5E-22 5.3E-27 198.3 14.2 225 55-284 65-307 (310)
90 1h6u_A Internalin H; cell adhe 99.9 1.1E-21 3.8E-26 191.7 19.4 192 52-260 39-230 (308)
91 2xwt_C Thyrotropin receptor; s 99.9 4.8E-22 1.6E-26 187.1 15.4 179 103-284 31-218 (239)
92 3m19_A Variable lymphocyte rec 99.9 1.9E-21 6.7E-26 184.3 18.7 179 55-238 15-193 (251)
93 4glp_A Monocyte differentiatio 99.9 3.2E-22 1.1E-26 196.1 12.4 200 128-332 91-307 (310)
94 1h6u_A Internalin H; cell adhe 99.9 2.7E-21 9.1E-26 189.0 18.1 193 77-285 39-231 (308)
95 4ay9_X Follicle-stimulating ho 99.9 6E-21 2E-25 190.2 16.6 243 57-330 12-257 (350)
96 4ay9_X Follicle-stimulating ho 99.9 1E-20 3.5E-25 188.6 17.4 224 106-337 12-241 (350)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 4.3E-21 1.5E-25 177.6 10.0 158 274-501 14-172 (220)
98 2o6s_A Variable lymphocyte rec 99.8 2.3E-20 8E-25 171.5 14.7 179 36-224 11-189 (208)
99 2v9t_B SLIT homolog 2 protein 99.8 6.1E-21 2.1E-25 176.6 10.2 157 274-500 14-170 (220)
100 2o6s_A Variable lymphocyte rec 99.8 4.6E-20 1.6E-24 169.5 14.4 177 57-268 10-186 (208)
101 2xot_A Amphoterin-induced prot 99.8 4.2E-20 1.4E-24 184.9 12.7 180 250-499 21-206 (361)
102 3cvr_A Invasion plasmid antige 99.8 1.4E-19 4.6E-24 189.7 16.9 180 33-240 60-246 (571)
103 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.6E-24 190.5 14.9 185 104-316 60-251 (571)
104 3e6j_A Variable lymphocyte rec 99.8 1E-19 3.6E-24 169.5 12.3 161 273-504 21-181 (229)
105 1h6t_A Internalin B; cell adhe 99.8 4.7E-19 1.6E-23 171.4 16.0 168 79-260 46-213 (291)
106 1h6t_A Internalin B; cell adhe 99.8 1.3E-18 4.5E-23 168.3 16.9 189 36-240 28-216 (291)
107 1m9s_A Internalin B; cell inva 99.8 5.9E-19 2E-23 187.0 14.3 191 34-240 23-213 (605)
108 2xot_A Amphoterin-induced prot 99.8 6.2E-19 2.1E-23 176.4 13.2 175 57-236 21-201 (361)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-18 7.2E-23 159.5 15.7 151 58-213 15-166 (220)
110 1m9s_A Internalin B; cell inva 99.8 1.8E-18 6.2E-23 183.3 14.5 190 9-215 23-212 (605)
111 2v9t_B SLIT homolog 2 protein 99.8 3.6E-18 1.2E-22 157.9 14.7 151 57-212 14-164 (220)
112 3e6j_A Variable lymphocyte rec 99.8 6.7E-18 2.3E-22 157.2 15.8 154 55-214 20-173 (229)
113 3sb4_A Hypothetical leucine ri 99.8 9.4E-19 3.2E-23 172.8 10.4 101 223-325 225-327 (329)
114 1w8a_A SLIT protein; signaling 99.8 8.6E-19 2.9E-23 158.5 9.2 92 409-500 53-144 (192)
115 4ezg_A Putative uncharacterize 99.8 3.3E-18 1.1E-22 155.5 12.2 153 29-189 41-194 (197)
116 4ezg_A Putative uncharacterize 99.8 7.7E-18 2.6E-22 153.0 13.5 152 77-237 42-194 (197)
117 1w8a_A SLIT protein; signaling 99.7 1.8E-17 6.3E-22 149.7 12.6 155 274-500 11-167 (192)
118 1xeu_A Internalin C; cellular 99.7 2.4E-17 8.2E-22 156.8 11.6 168 153-334 20-187 (263)
119 1xeu_A Internalin C; cellular 99.7 3.4E-17 1.2E-21 155.8 12.4 147 77-237 39-185 (263)
120 1dce_A Protein (RAB geranylger 99.7 3.6E-19 1.2E-23 187.5 -1.4 184 245-501 347-552 (567)
121 1dce_A Protein (RAB geranylger 99.7 4.1E-19 1.4E-23 187.1 -1.9 119 154-277 443-566 (567)
122 3sb4_A Hypothetical leucine ri 99.7 1.9E-17 6.5E-22 163.4 10.1 259 31-301 24-327 (329)
123 2wfh_A SLIT homolog 2 protein 99.7 2.3E-17 8E-22 148.9 9.5 92 409-500 53-144 (193)
124 4fdw_A Leucine rich hypothetic 99.7 7.7E-16 2.6E-20 155.1 20.6 264 30-308 111-383 (401)
125 4fdw_A Leucine rich hypothetic 99.7 4E-15 1.4E-19 149.9 23.1 271 151-495 112-383 (401)
126 4b8c_D Glucose-repressible alc 99.7 1.2E-17 4.2E-22 181.5 4.9 130 208-341 209-338 (727)
127 4fs7_A Uncharacterized protein 99.7 1.9E-15 6.6E-20 152.9 20.3 225 69-304 61-285 (394)
128 4b8c_D Glucose-repressible alc 99.7 1.8E-17 6.2E-22 180.2 4.7 191 231-498 208-407 (727)
129 2ell_A Acidic leucine-rich nuc 99.7 3.1E-16 1.1E-20 138.5 11.1 88 409-496 70-161 (168)
130 2ell_A Acidic leucine-rich nuc 99.7 3.3E-16 1.1E-20 138.3 10.6 138 270-477 23-165 (168)
131 2o6r_A Variable lymphocyte rec 99.6 7.3E-16 2.5E-20 137.3 11.8 93 409-501 51-143 (177)
132 2je0_A Acidic leucine-rich nuc 99.6 2.9E-16 9.9E-21 135.6 8.3 83 409-491 63-149 (149)
133 4fs7_A Uncharacterized protein 99.6 1E-14 3.5E-19 147.6 20.9 318 90-492 58-376 (394)
134 2je0_A Acidic leucine-rich nuc 99.6 7.1E-16 2.4E-20 133.2 8.2 128 271-467 17-149 (149)
135 2wfh_A SLIT homolog 2 protein 99.6 4.7E-15 1.6E-19 133.7 13.0 127 57-189 13-139 (193)
136 2o6r_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 130.2 13.2 132 56-192 9-140 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.6 7.8E-15 2.7E-19 130.4 11.1 133 3-140 15-152 (176)
138 1ds9_A Outer arm dynein; leuci 99.6 1E-16 3.5E-21 145.7 -1.5 153 269-495 16-185 (198)
139 3g39_A Variable lymphocyte rec 99.6 4.6E-15 1.6E-19 130.9 7.5 110 396-505 16-125 (170)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.8E-19 129.4 9.1 86 409-496 63-154 (176)
141 2r9u_A Variable lymphocyte rec 99.5 1.1E-14 3.7E-19 128.9 7.7 110 395-504 18-127 (174)
142 4gt6_A Cell surface protein; l 99.5 2.2E-12 7.4E-17 130.4 21.5 108 218-329 259-367 (394)
143 4gt6_A Cell surface protein; l 99.5 2.7E-12 9.2E-17 129.7 22.2 81 409-494 310-390 (394)
144 1ds9_A Outer arm dynein; leuci 99.5 1.9E-15 6.5E-20 137.2 -1.6 138 291-500 14-158 (198)
145 3g39_A Variable lymphocyte rec 99.4 7.6E-13 2.6E-17 116.6 10.7 106 55-165 10-115 (170)
146 2r9u_A Variable lymphocyte rec 99.4 1E-12 3.6E-17 116.1 10.3 104 57-165 15-118 (174)
147 3un9_A NLR family member X1; l 99.4 3.1E-14 1E-18 142.0 -0.7 136 78-213 71-224 (372)
148 3un9_A NLR family member X1; l 99.4 1.1E-13 3.7E-18 138.0 1.4 185 53-237 71-283 (372)
149 2ifg_A High affinity nerve gro 99.3 2.3E-12 7.9E-17 128.0 9.6 90 409-499 30-120 (347)
150 4h09_A Hypothetical leucine ri 99.3 1.9E-10 6.4E-15 115.6 22.4 130 194-327 211-341 (379)
151 4h09_A Hypothetical leucine ri 99.2 1.3E-09 4.5E-14 109.4 24.0 61 428-489 280-340 (379)
152 2ifg_A High affinity nerve gro 99.2 2.3E-11 7.8E-16 120.8 10.1 107 413-521 11-119 (347)
153 2ra8_A Uncharacterized protein 98.9 8.2E-10 2.8E-14 109.0 6.2 65 246-310 251-322 (362)
154 2ra8_A Uncharacterized protein 98.9 1.7E-09 5.8E-14 106.7 8.1 64 409-472 251-321 (362)
155 3rw6_A Nuclear RNA export fact 98.5 1.5E-07 5.2E-12 87.8 6.0 67 431-499 167-237 (267)
156 1io0_A Tropomodulin; LRR prote 98.4 8.6E-08 2.9E-12 85.2 3.7 17 315-331 147-163 (185)
157 1io0_A Tropomodulin; LRR prote 98.4 7.8E-08 2.7E-12 85.5 2.8 116 193-308 29-164 (185)
158 3rw6_A Nuclear RNA export fact 98.4 9.2E-08 3.2E-12 89.3 2.8 78 409-488 169-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 4.3E-07 1.5E-11 78.5 2.3 84 410-493 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5E-11 75.2 3.4 82 80-162 62-149 (176)
161 3rfe_A Platelet glycoprotein I 97.7 4.7E-05 1.6E-09 62.7 5.8 61 437-499 11-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00011 3.6E-09 64.8 3.7 86 54-139 70-168 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00024 8.4E-09 62.5 5.1 17 315-331 153-169 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.0009 3.1E-08 54.9 5.4 57 413-471 11-68 (130)
165 2k1k_A Ephrin type-A receptor 75.3 4.1 0.00014 24.5 3.7 25 554-580 14-38 (38)
166 2lz0_A Uncharacterized protein 67.0 6.1 0.00021 30.0 4.1 41 94-136 11-51 (100)
167 2l2t_A Receptor tyrosine-prote 67.0 8.5 0.00029 24.0 3.9 7 555-561 15-21 (44)
168 2l9u_A Receptor tyrosine-prote 63.8 5.8 0.0002 22.7 2.4 26 552-577 8-33 (40)
169 2jwa_A Receptor tyrosine-prote 53.6 19 0.00064 22.4 3.7 11 566-576 28-38 (44)
170 2lz0_A Uncharacterized protein 48.1 36 0.0012 25.6 5.6 45 422-467 8-52 (100)
171 2k9y_A Ephrin type-A receptor 42.5 30 0.001 20.9 3.6 9 554-562 17-25 (41)
172 2lx0_A Membrane fusion protein 38.5 32 0.0011 18.5 2.6 20 556-575 8-27 (32)
173 1lgh_B LH II, B800/850, light 35.0 79 0.0027 19.7 4.4 28 550-577 17-44 (45)
174 1nkz_B Light-harvesting protei 32.7 81 0.0028 19.2 4.1 28 551-578 13-40 (41)
175 1dx7_A Light-harvesting protei 20.8 75 0.0026 20.1 2.5 26 552-577 22-47 (48)
176 1wrg_A LH-1, light-harvesting 20.1 1.1E+02 0.0037 20.1 3.2 27 552-578 22-48 (55)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-64 Score=557.45 Aligned_cols=522 Identities=33% Similarity=0.453 Sum_probs=429.5
Q ss_pred cccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717 3 LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLV 82 (580)
Q Consensus 3 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 82 (580)
+.++++|++|++++|.+++.+|..+ .++++|++|++++|.+++......+++|++|++++|.+++.+|..++..+++|+
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCS
T ss_pred cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCC
Confidence 5667778888888888776666544 478888888888887776433347788999999999998889988876679999
Q ss_pred EEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCC-CCCEEeccC
Q 036717 83 YMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLT-QLQLLYLDN 161 (580)
Q Consensus 83 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~ 161 (580)
+|++++|++++.+|..++++++|++|++++|.+++.+|...+..+++|++|++++|.+++.+|..+..++ +|++|++++
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCS
T ss_pred EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccC
Confidence 9999999999999999999999999999999999899988789999999999999999988899888887 999999999
Q ss_pred ccccccccccccC--CCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccc
Q 036717 162 NHFSGKIKDGLLR--STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGS 239 (580)
Q Consensus 162 n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 239 (580)
|.+++..+..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.
T Consensus 378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCc
Confidence 9999888888776 88999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCC
Q 036717 240 MISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRL 318 (580)
Q Consensus 240 ~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 318 (580)
.+..+ .+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|.+++.+|..++.+
T Consensus 458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 77766 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEeeCCeecCccChhhhhhcccccCC-CC-ccccccCCCCCCCccchhhcccccccccccchhhhhccccE----
Q 036717 319 RKLGIMDLSHNRLYGSIPACITNSLFWKVGN-ES-LYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVE---- 392 (580)
Q Consensus 319 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 392 (580)
++|+.|++++|+++|.+|.++.......... .. ................ ...............+..+.....
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH-GAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC-SSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc-ccccccccccccchhhhccccccccccc
Confidence 9999999999999999999887643211100 00 0000000000000000 000000000000000000000000
Q ss_pred EEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccc
Q 036717 393 VNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNG 472 (580)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 472 (580)
...........+ ..+++|+.|||++|+++|.+|.+|+.+++|+.|+|++|+++|.+|..|+++++|+.|||++|+++|
T Consensus 617 ~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 617 SRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp SCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cceecccCchhh--hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 000000000111 226889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccccCCCCCCCCCCCCCCCCC
Q 036717 473 QIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTN 529 (580)
Q Consensus 473 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~C~~ 529 (580)
.+|+.+..+++|++||+++|+++|.+|...+|.++...+|.||+++||+|.. .|..
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~ 750 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP 750 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC
Confidence 9999999999999999999999999999999999999999999999999986 8865
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-56 Score=494.50 Aligned_cols=484 Identities=30% Similarity=0.431 Sum_probs=352.2
Q ss_pred ccCCCCCEEECCCCCCcccCchHH--hhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCC
Q 036717 4 RHQFNLKYLDLSHNKLAGNFPTWL--LENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKL 81 (580)
Q Consensus 4 ~~~~~L~~L~Ls~n~i~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L 81 (580)
.++++|++|++++|++++..|..+ +.++++|++|++++|.+++......+++|++|++++|.+.+.+|. +..+++|
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L 225 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSAL 225 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSC
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCC
Confidence 344555555555555554443331 345666666666666665543334677788888888887766665 3467888
Q ss_pred cEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCC-CCCCEEecc
Q 036717 82 VYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNL-TQLQLLYLD 160 (580)
Q Consensus 82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~ 160 (580)
++|++++|.+++.+|..++++++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|+++
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence 88888888888777888888888888888888877666652 67778888888888777777776654 788888888
Q ss_pred CccccccccccccCCCCCCEEEcccCCCCCCCchh-hhcCCCCCEEEcccCcCCCcCchhccCCC-CCcEEEccCCcCcc
Q 036717 161 NNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW-MGNFSYLQILSMSKNLLEGNIPVQFNDLL-DLEILNISENNLSG 238 (580)
Q Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 238 (580)
+|.+++..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 88887777878888888888888888877666654 77788888888888888777777777766 78888888887776
Q ss_pred ccCCcc-C--CCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccc
Q 036717 239 SMISTL-N--LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQL 315 (580)
Q Consensus 239 ~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 315 (580)
..+..+ . +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|.+++.+|..+
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 462 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 555544 2 6678888888888877778788888888888888888877778888888888888888888887788888
Q ss_pred cCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhh--cccccccccccchhhhhccccEE
Q 036717 316 CRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDY--YNSTVQLRLDESDLRWLVKQVEV 393 (580)
Q Consensus 316 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 393 (580)
..+++|+.|++++|++++.+|..+... ..++.+++.++.+....+..+ ...+..+.+.
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l-------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~------------- 522 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNC-------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLS------------- 522 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGC-------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC-------------
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcC-------CCCCEEEccCCccCCcCChHHhcCCCCCEEECC-------------
Confidence 888888888888888887777776654 355566666665553322211 1222333333
Q ss_pred EEeeccccc-eecc--cccccccEEEccCCcceeeCCc------------------------------------------
Q 036717 394 NFMTKNRYE-SYKG--VILEHMAGLDLSSNELTGNIPS------------------------------------------ 428 (580)
Q Consensus 394 ~~~~~~~~~-~~~~--~~l~~L~~L~Ls~n~l~~~~~~------------------------------------------ 428 (580)
.+.+. ..+. ..+++|+.|++++|.++|.+|.
T Consensus 523 ----~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 523 ----NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp ----SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred ----CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 33322 1111 2256667777777766655554
Q ss_pred ----------------------------ccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcC
Q 036717 429 ----------------------------EIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 480 (580)
Q Consensus 429 ----------------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 480 (580)
.++.+++|++|+|++|+++|.+|..|+++++|+.|+|++|+++|.+|+.+.+
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence 4455688999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEeccCCcccccCCCC-cccCCcCccccCCCC
Q 036717 481 LHSLSKFDVSYNNLSGPIPDK-EQFSTFDESSYRGNL 516 (580)
Q Consensus 481 l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 516 (580)
+++|++|||++|+++|.+|.. ..+..+...++.+|.
T Consensus 679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 999999999999999999975 445556666666665
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-52 Score=463.82 Aligned_cols=484 Identities=20% Similarity=0.195 Sum_probs=268.1
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCC---CCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcE
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGF---QLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVY 83 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 83 (580)
+++++|+|++|.+++..|. .+.++++|++|+|++|...+. .....+++|++|+|++|.+.+..|..+ .++++|++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~ 101 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHLFE 101 (844)
T ss_dssp TTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSCCC
T ss_pred CCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc-cCCcccCE
Confidence 5677777777777633333 345777777777777743321 112356677777777777764444444 36777777
Q ss_pred EEcccCcCccccchh--hhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCC--CCCCEEec
Q 036717 84 MNISKNSFEGNIPSS--IAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNL--TQLQLLYL 159 (580)
Q Consensus 84 L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l 159 (580)
|++++|.+++..|.. ++++++|++|++++|.+++..+...++++++|++|++++|.+++..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 777777776655544 67777777777777777644443445677777777777777766666666655 67777777
Q ss_pred cCccccccccccccCCCC------CCEEEcccCCCCCCCchhhhcC---CCCCEEEcccC---------cCCCcCchhcc
Q 036717 160 DNNHFSGKIKDGLLRSTE------LMVLDISNNRLSGHIPSWMGNF---SYLQILSMSKN---------LLEGNIPVQFN 221 (580)
Q Consensus 160 ~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n---------~l~~~~~~~~~ 221 (580)
++|.+.+..+..+..+++ |+.|++++|.+.+..+..+... ..++.+.++.+ .+.+.....|.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 777776666655554444 7777777776655444433321 12222222211 01111111122
Q ss_pred CC--CCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcc
Q 036717 222 DL--LDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLR 298 (580)
Q Consensus 222 ~l--~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 298 (580)
++ ++|+.|++++|.+.+..+..+ .+++|+.|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 21 344555555555444443333 444555555555555444444444455555555555555444444444555555
Q ss_pred eeecccccccccCcccccCCCCCCEEEeeCCeecC------------------ccChhhhhhcccccCCCCccccccCCC
Q 036717 299 ALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYG------------------SIPACITNSLFWKVGNESLYQLDEEGA 360 (580)
Q Consensus 299 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~p~~~~~~~~~~~~~~~~~~l~~~~~ 360 (580)
.|++++|.+++..+..|..+++|+.|++++|.+++ .+|... ..+..+++..+
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~----------~~l~~L~ls~N 411 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN----------LTANLIHLSEN 411 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCC----------TTCCEEECCSC
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccc----------cccceeecccC
Confidence 55555555544444444445555555555554432 222211 12333444444
Q ss_pred CCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecc----cccccccEEEccCCcce-----eeCCcccc
Q 036717 361 DVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKG----VILEHMAGLDLSSNELT-----GNIPSEIG 431 (580)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~L~~L~Ls~n~l~-----~~~~~~~~ 431 (580)
.+...+...+.. -...++...+..+.+..... ..+++|+.|++++|.++ +..+..|.
T Consensus 412 ~l~~l~~~~~~~--------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 412 RLENLDILYFLL--------------RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp CCCSSTTHHHHT--------------TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred ccccCchhhhhh--------------cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 443332221110 01223334444444432221 12566777777777775 33445667
Q ss_pred cccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccc
Q 036717 432 DLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESS 511 (580)
Q Consensus 432 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 511 (580)
++++|+.|+|++|.+++.+|..|.++++|+.|+|++|++++..|..+. ++|+.|||++|++++..|.. +..+...+
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~ 553 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLD 553 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEE
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEE
Confidence 777777777777777777777777777777777777777766665555 67777777777777766643 44555666
Q ss_pred cCCCCCCCC
Q 036717 512 YRGNLHLCG 520 (580)
Q Consensus 512 ~~~n~~lc~ 520 (580)
+.+|++.|+
T Consensus 554 l~~Np~~C~ 562 (844)
T 3j0a_A 554 ITHNKFICE 562 (844)
T ss_dssp EEEECCCCS
T ss_pred ecCCCcccc
Confidence 667777663
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.6e-51 Score=441.38 Aligned_cols=471 Identities=19% Similarity=0.153 Sum_probs=330.0
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM 84 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 84 (580)
+++++|++++|.++ .++...+.++++|++|+|++|.++++.. ...+++|++|++++|.+++..|..+ ..+++|++|
T Consensus 33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-SGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT-SSCTTCCEE
T ss_pred CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh-cccccccEe
Confidence 36788888888887 4444445688888888888888876532 2467888888888888875445444 478888888
Q ss_pred EcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCC--EEeccCc
Q 036717 85 NISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQ--LLYLDNN 162 (580)
Q Consensus 85 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--~L~l~~n 162 (580)
++++|++++..+..++++++|++|++++|.+.+..... +..+++|++|++++|.+++..+..|..+++|+ +|++++|
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 88888888766777888888888888888887422122 23578888888888888877677777888888 7888888
Q ss_pred cccccccccccCC---------------------------------------------------CCCCEEEcccCCCCCC
Q 036717 163 HFSGKIKDGLLRS---------------------------------------------------TELMVLDISNNRLSGH 191 (580)
Q Consensus 163 ~l~~~~~~~l~~l---------------------------------------------------~~L~~L~L~~n~l~~~ 191 (580)
.+++..+..+... .+|+.|++++|.+.+.
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 7776555443221 1577788888888877
Q ss_pred CchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCCh-hccC
Q 036717 192 IPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPN-TFFR 269 (580)
Q Consensus 192 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~-~~~~ 269 (580)
.+..|+.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+.+.++. .+..
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 7777888888888888888887 667778888888888888888887766544 788888888888888755544 4778
Q ss_pred CCCccEEeCCCCcCcccC--chhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChh-hhhhcccc
Q 036717 270 GSALETLDLRDNNFSGRI--PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPAC-ITNSLFWK 346 (580)
Q Consensus 270 ~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~~~ 346 (580)
+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|.. +...
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l---- 424 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL---- 424 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC----
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc----
Confidence 888888888888887655 667788888888888888888777888888888888888888887665543 3332
Q ss_pred cCCCCccccccCCCCCCCccchhh--cccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCccee
Q 036717 347 VGNESLYQLDEEGADVGNVDIRDY--YNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTG 424 (580)
Q Consensus 347 ~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 424 (580)
..++.+++.++.+....+..+ ...++.+.++.+.+...... ....+ ..+++|+.|++++|++++
T Consensus 425 ---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~~--~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 425 ---HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---------KTNSL--QTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp ---TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC---------SSCGG--GGCTTCCEEECTTSCCCE
T ss_pred ---ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc---------cchhh--ccCCCccEEECCCCccCc
Confidence 345556666555544322211 22223333332221110000 00001 125677777777777777
Q ss_pred eCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717 425 NIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 425 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 500 (580)
..|..|+.+++|++|+|++|++++..|..+.+++.| .|+|++|++++.+|..+..+++|++|++++|+++|.|+.
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 777777777777777777777777777777777777 777777777776676677777777777777777776653
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-50 Score=441.62 Aligned_cols=490 Identities=20% Similarity=0.198 Sum_probs=278.9
Q ss_pred ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717 2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQ 79 (580)
Q Consensus 2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 79 (580)
.|.++++|++|++++|.+++..| ..+.++++|++|+|++|.++.++. ...+++|++|++++|.+. .++...+..++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 121 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQK 121 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCT
T ss_pred HHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccC
Confidence 35677777777777777774333 445577778888887777776543 236777888888888777 45444445677
Q ss_pred CCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHH-HhCCCCCcEEEcccccCCCcCCccccCC-------
Q 036717 80 KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL-VTNCFSLIWLDLSNNNFDGQIFPNYMNL------- 151 (580)
Q Consensus 80 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l------- 151 (580)
+|++|++++|.+++..|..++++++|++|++++|.+++..+..+ ...+++|++|++++|.+++..+..+..+
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence 88888888887777777777777888888888777774333322 1245677777777777766555544332
Q ss_pred --------------------CCCCEEeccCccccccccccccCCCC--CCEEEcccCCCCCCCchhhhcCCCCCEEEccc
Q 036717 152 --------------------TQLQLLYLDNNHFSGKIKDGLLRSTE--LMVLDISNNRLSGHIPSWMGNFSYLQILSMSK 209 (580)
Q Consensus 152 --------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 209 (580)
++|++|++++|.+++..+..+..++. |++|++++|.+.+..|..|+.+++|++|++++
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence 34455555555555555555555433 66777777666665566666666677777776
Q ss_pred CcCCCcCchhccCCCCCcEEEccCCcCcc---------ccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCC-------
Q 036717 210 NLLEGNIPVQFNDLLDLEILNISENNLSG---------SMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSA------- 272 (580)
Q Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~------- 272 (580)
|.+.+..+..|..+++|+.|++++|...+ .....+ .+++|++|++++|.+++..+..|..+++
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361 (680)
T ss_dssp CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence 66665555555555555555555443221 000111 4455555555555555544444444444
Q ss_pred ---------------------ccEEeCCCCcCcccCchhhccCcCcceeecccccccccCc-ccccCCCCCCEEEeeCCe
Q 036717 273 ---------------------LETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP-HQLCRLRKLGIMDLSHNR 330 (580)
Q Consensus 273 ---------------------L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 330 (580)
|+.|++++|++++..|.++..+++|+.|++++|.+++.++ ..+..+++|+.|++++|+
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 4444555556666667778888888888888888876555 678888888888888888
Q ss_pred ecCccChhhhhhcccccCCCCccccccCCCCCCCccc----hhhcccccccccccchhhhhc-------cccEEEEeecc
Q 036717 331 LYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDI----RDYYNSTVQLRLDESDLRWLV-------KQVEVNFMTKN 399 (580)
Q Consensus 331 l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 399 (580)
+++..+..+...+ .++.+++.++.+..... ......++.+.++.+.+..+. ..++...+..+
T Consensus 442 l~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 442 YLQLTRNSFALVP-------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514 (680)
T ss_dssp EEECCTTTTTTCT-------TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cceeChhhhhcCc-------ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC
Confidence 8766665555432 33444444433321110 011112222222222211110 11122222222
Q ss_pred ccceec-----------ccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCC
Q 036717 400 RYESYK-----------GVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468 (580)
Q Consensus 400 ~~~~~~-----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 468 (580)
.+..+. -..+++|+.|++++|+++...+..|+++++|++|+|++|++++..+..|.++++|+.|+|++|
T Consensus 515 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence 222110 011445555555555555333334555555555555555555444444555555555555555
Q ss_pred cccccCchhhc-CCCCCCEEeccCCcccccCCC
Q 036717 469 KLNGQIPPQLT-ELHSLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 469 ~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~ 500 (580)
++++..|..+. .+++|++|++++|++.|.|+.
T Consensus 595 ~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 595 LITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 55555554444 455555555555555555543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.2e-50 Score=433.10 Aligned_cols=445 Identities=20% Similarity=0.192 Sum_probs=347.9
Q ss_pred ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717 2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQ 79 (580)
Q Consensus 2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 79 (580)
.|.++++|++|++++|++++..| ..+.++++|++|+|++|.+++... ...+++|++|++++|.+++ ++...+..++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~ 129 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQK 129 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCT
T ss_pred HhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc-CCcchhccCC
Confidence 47889999999999999985444 445689999999999999887532 2478899999999999984 4333345789
Q ss_pred CCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc--EEEcccccCCCcCCccccCC------
Q 036717 80 KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI--WLDLSNNNFDGQIFPNYMNL------ 151 (580)
Q Consensus 80 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l------ 151 (580)
+|++|++++|++++..+..+..+++|++|++++|.++ .++...+..+++|+ .|++++|.+.+..+..+...
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~ 208 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence 9999999999998754445556999999999999998 55555568889888 88999998887665544321
Q ss_pred ---------------------------------------------CCCCEEeccCccccccccccccCCCCCCEEEcccC
Q 036717 152 ---------------------------------------------TQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNN 186 (580)
Q Consensus 152 ---------------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 186 (580)
.+|++|++++|.+++..+..+..+++|++|++++|
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence 16777888888888777777888889999999998
Q ss_pred CCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCc-c-CCCCCcEEEeeCCcCcccC-
Q 036717 187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST-L-NLSSVEHLYLQNNALGGSI- 263 (580)
Q Consensus 187 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~n~l~~~~- 263 (580)
.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. + .+++|++|++++|.+++..
T Consensus 289 ~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 289 HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred ccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence 888 66777888888999999999888777788888888999999988887544332 3 7888899999988888665
Q ss_pred -ChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcc-cccCCCCCCEEEeeCCeecCccChhhhh
Q 036717 264 -PNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH-QLCRLRKLGIMDLSHNRLYGSIPACITN 341 (580)
Q Consensus 264 -~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 341 (580)
+..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+++..|..+..
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 447 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC
Confidence 66788888899999999888888888888888899999988888876554 4788888899999988888777776655
Q ss_pred hcccccCCCCccccccCCCCCCCccc-----hhhcccccccccccchhhhhccccEEEEeeccccceecc---ccccccc
Q 036717 342 SLFWKVGNESLYQLDEEGADVGNVDI-----RDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKG---VILEHMA 413 (580)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~ 413 (580)
. ..++.+++.++.+..... ......++.+. ++.+.+..... ..+++|+
T Consensus 448 l-------~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~-----------------Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 448 L-------PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV-----------------LSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp C-------TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE-----------------CTTSCCCEECTTTTTTCTTCC
T ss_pred C-------CCCCEEECCCCCCCccccccchhhccCCCccEEE-----------------CCCCccCccChhhhccccCCC
Confidence 3 356666666666543211 11222233333 33333333321 2378999
Q ss_pred EEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCc
Q 036717 414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 475 (580)
Q Consensus 414 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 475 (580)
.|++++|++++..|..+..++.| +|++++|.+++.+|..+..+++|+.|++++|.+.+..+
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999 99999999999999999999999999999999987654
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-49 Score=434.33 Aligned_cols=465 Identities=21% Similarity=0.233 Sum_probs=308.7
Q ss_pred ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717 2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQ 79 (580)
Q Consensus 2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 79 (580)
.|.++++|++|++++|.++ .+|...+.++++|++|+|++|.++++.. ...+++|++|++++|.+++..|..+ ..++
T Consensus 68 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~ 145 (680)
T 1ziw_A 68 LCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLE 145 (680)
T ss_dssp HHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCT
T ss_pred HHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh-cccc
Confidence 3567888888888888887 6776666688888888888888877642 2367788888888888775444444 4677
Q ss_pred CCcEEEcccCcCccccchhhh--cCCCCCEEEcccCcCccccchH-----------------------------------
Q 036717 80 KLVYMNISKNSFEGNIPSSIA--KMQGLRFLDVSTNNFAGELSQS----------------------------------- 122 (580)
Q Consensus 80 ~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~----------------------------------- 122 (580)
+|++|++++|.+++..+..++ .+++|++|++++|.+++..+..
T Consensus 146 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~ 225 (680)
T 1ziw_A 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225 (680)
T ss_dssp TCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC
T ss_pred cCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc
Confidence 788888888877766665554 3467777777777666332221
Q ss_pred ---------------HHhCCC--CCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEccc
Q 036717 123 ---------------LVTNCF--SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISN 185 (580)
Q Consensus 123 ---------------~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 185 (580)
.+..++ +|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred EEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 112222 255555555555554455555555555555555555555555555555555555555
Q ss_pred CCCCC-----CCc----hhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcc--ccCCcc---CCCCCcE
Q 036717 186 NRLSG-----HIP----SWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSG--SMISTL---NLSSVEH 251 (580)
Q Consensus 186 n~l~~-----~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~---~~~~L~~ 251 (580)
|...+ .+| ..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.. .....+ ..++|+.
T Consensus 306 ~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp CBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred hhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence 43322 112 145666777777777777777667777777777777777765432 222222 2356777
Q ss_pred EEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCc-hhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCe
Q 036717 252 LYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIP-HQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNR 330 (580)
Q Consensus 252 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 330 (580)
|++++|.+++..|..+..+++|+.|++++|++++.+| ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 7777777777777778888888888888888876555 567777888888888887776666667777777777777776
Q ss_pred ec--CccChhhhhhcccccCCCCccccccCCCCCCCccch--hhcccccccccccchhhhh---------------cccc
Q 036717 331 LY--GSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIR--DYYNSTVQLRLDESDLRWL---------------VKQV 391 (580)
Q Consensus 331 l~--~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~~ 391 (580)
+. +.+|..+... .+++.+++.++.+...... .....++.+.++.+.+..+ ...+
T Consensus 466 l~~~~~~p~~~~~l-------~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 466 LKNVDSSPSPFQPL-------RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp CBCTTCSSCTTTTC-------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred ccccccCCcccccC-------CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 65 3455544433 2444555555554443332 1223344444444443322 1334
Q ss_pred EEEEeeccccceecc---cccccccEEEccCCcceeeCCcccccccCCCeEecccCcceeccccccc-CcccCCEEECCC
Q 036717 392 EVNFMTKNRYESYKG---VILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFS-NLKMIESLDLSH 467 (580)
Q Consensus 392 ~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~ 467 (580)
+...+..+.+..++. ..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..|..+. .+++|+.|++++
T Consensus 539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence 556667777666654 2378999999999999988888899999999999999999998888887 789999999999
Q ss_pred CcccccCc
Q 036717 468 NKLNGQIP 475 (580)
Q Consensus 468 N~l~~~~p 475 (580)
|.+....+
T Consensus 619 N~~~c~c~ 626 (680)
T 1ziw_A 619 NPFDCTCE 626 (680)
T ss_dssp CCCCBCCC
T ss_pred CCcccCCc
Confidence 99987544
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-49 Score=426.72 Aligned_cols=434 Identities=20% Similarity=0.173 Sum_probs=295.0
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC--CCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM 84 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 84 (580)
+++++|++++|+++ .++...+.++++|++|+|++|.++++... ..+++|++|++++|.+++..|..+ .++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS-TTCTTCCEE
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc-CCcccCCEE
Confidence 57888888888888 45554566888888888888888876322 467888888888888885445554 478888888
Q ss_pred EcccCcCccccchhhhcCCCCCEEEcccCcCcc-ccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCC----EEec
Q 036717 85 NISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAG-ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQ----LLYL 159 (580)
Q Consensus 85 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~l 159 (580)
++++|.+++..+..++++++|++|++++|.+.+ .+|.. +.++++|++|++++|.+++..+..+..+++|+ +|++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 888888887776788888888888888888874 45654 47888888888888888877777776665554 7888
Q ss_pred cCccccccccccccCCCCCCEEEcccCCCC--------------------------------------------------
Q 036717 160 DNNHFSGKIKDGLLRSTELMVLDISNNRLS-------------------------------------------------- 189 (580)
Q Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-------------------------------------------------- 189 (580)
++|.+++..+..+.. .+|+.|++++|.+.
T Consensus 189 ~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp TTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred cCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 888877555444433 37777777776543
Q ss_pred --------CCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcc
Q 036717 190 --------GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGG 261 (580)
Q Consensus 190 --------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 261 (580)
+..|. +..+++|+.|++++|.+. .++ .+..+++|++|++++|.+...+ .. .+++|++|++++|...+
T Consensus 268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCE
T ss_pred ccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCcc
Confidence 22233 566788899999998886 445 7888888999999999885444 44 88888899998886554
Q ss_pred cCChhccCCCCccEEeCCCCcCccc--CchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccC-hh
Q 036717 262 SIPNTFFRGSALETLDLRDNNFSGR--IPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP-AC 338 (580)
Q Consensus 262 ~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~ 338 (580)
.. .+..+++|++|++++|++++. .|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence 33 566788888888888888765 37778888888888888888874 55778888888888888888887666 34
Q ss_pred hhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEcc
Q 036717 339 ITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLS 418 (580)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 418 (580)
+... ..++.+++.++.+....+..+. .+++|+.|+++
T Consensus 420 ~~~l-------~~L~~L~l~~n~l~~~~~~~~~------------------------------------~l~~L~~L~l~ 456 (606)
T 3vq2_A 420 FLSL-------EKLLYLDISYTNTKIDFDGIFL------------------------------------GLTSLNTLKMA 456 (606)
T ss_dssp TTTC-------TTCCEEECTTSCCEECCTTTTT------------------------------------TCTTCCEEECT
T ss_pred hhcc-------ccCCEEECcCCCCCccchhhhc------------------------------------CCCCCCEEECC
Confidence 4332 3455555555544332211111 13445555555
Q ss_pred CCccee-eCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCccc
Q 036717 419 SNELTG-NIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495 (580)
Q Consensus 419 ~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 495 (580)
+|.+++ .+|..++.+++|++|++++|.+++..|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 555544 24444455555555555555555444444555555555555555555444455555555555555555544
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-49 Score=437.79 Aligned_cols=497 Identities=21% Similarity=0.227 Sum_probs=368.8
Q ss_pred ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChh-HhhcC
Q 036717 2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQN-MGIVL 78 (580)
Q Consensus 2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~-~~~~l 78 (580)
.|.++++|++|+|++|...+.++...+.++++|++|+|++|.+++... ...+++|++|++++|.+++.+|.. .+..+
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 478999999999999977668877777899999999999999987632 248899999999999999766654 34689
Q ss_pred CCCcEEEcccCcCccccc-hhhhcCCCCCEEEcccCcCccccchHHHhCC--CCCcEEEcccccCCCcCCccccCCCC--
Q 036717 79 QKLVYMNISKNSFEGNIP-SSIAKMQGLRFLDVSTNNFAGELSQSLVTNC--FSLIWLDLSNNNFDGQIFPNYMNLTQ-- 153 (580)
Q Consensus 79 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~-- 153 (580)
++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+ ..+ ++|+.|++++|.+.+..+..+..+++
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCcc
Confidence 999999999999987654 689999999999999999986555543 555 89999999999999888877776665
Q ss_pred ----CCEEeccCccccccccccccC--------------------------------------CCCCCEEEcccCCCCCC
Q 036717 154 ----LQLLYLDNNHFSGKIKDGLLR--------------------------------------STELMVLDISNNRLSGH 191 (580)
Q Consensus 154 ----L~~L~l~~n~l~~~~~~~l~~--------------------------------------l~~L~~L~L~~n~l~~~ 191 (580)
|++|++++|.+++..+..+.. .++|+.|++++|.+.+.
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 999999999877554443321 25788888888888877
Q ss_pred CchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCC
Q 036717 192 IPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG 270 (580)
Q Consensus 192 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~ 270 (580)
.+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|.+.+..+..|..+
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 77788888888888888888887778888888888888888888887766555 78888888888888887777778888
Q ss_pred CCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccCh-hhhhhcccccCC
Q 036717 271 SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA-CITNSLFWKVGN 349 (580)
Q Consensus 271 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~~~~~~ 349 (580)
++|+.|++++|.+++. + .+++|+.|++++|+++ .+|.. ...++.+++++|++++.... .+. ..
T Consensus 362 ~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~-------~l 425 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLL-------RV 425 (844)
T ss_dssp CCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHT-------TC
T ss_pred CCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhh-------cC
Confidence 8888888888888732 2 2667777777777776 33332 34556666666666532111 111 11
Q ss_pred CCccccccCCCCCCCccch---hhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeC
Q 036717 350 ESLYQLDEEGADVGNVDIR---DYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNI 426 (580)
Q Consensus 350 ~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 426 (580)
..++.+++.++.+...... .....++.+.++.+.+...... ......+. .+++|+.|+|++|++++..
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~-------~~~~~~~~--~l~~L~~L~Ls~N~l~~~~ 496 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET-------ELCWDVFE--GLSHLQVLYLNHNYLNSLP 496 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS-------CCCSSCSS--CBCCEECCCCCHHHHTTCC
T ss_pred CccceeeCCCCcccccccccccccCCccccccCCCCcccccccc-------ccchhhhc--CcccccEEECCCCcccccC
Confidence 3444445555444432211 1112222333332221110000 00001111 2789999999999999999
Q ss_pred CcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCC
Q 036717 427 PSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFST 506 (580)
Q Consensus 427 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 506 (580)
|..|.++++|+.|+|++|++++..|..+. ++|+.|+|++|++++.+|+.+ ++|+.|++++|++.|.|+.. +|..
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~-~f~~ 570 (844)
T 3j0a_A 497 PGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS-TFIN 570 (844)
T ss_dssp TTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC-SHHH
T ss_pred hhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH-HHHH
Confidence 99999999999999999999988777776 899999999999999999775 47899999999999999743 2222
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCC
Q 036717 507 FDESSYRGNLHLCGPPINKSCTNLPKL 533 (580)
Q Consensus 507 ~~~~~~~~n~~lc~~~~~~~C~~~~~~ 533 (580)
| ...++..+||.+....|..++..
T Consensus 571 ~---~~~~~~~~~~~~~~~~C~~p~~~ 594 (844)
T 3j0a_A 571 W---LNHTNVTIAGPPADIYCVYPDSF 594 (844)
T ss_dssp H---HHHTTTTTCCCGGGCCCSSCSSS
T ss_pred H---HHhcCcccccccccCccCCchhh
Confidence 2 23466778888888889875543
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-48 Score=420.20 Aligned_cols=445 Identities=20% Similarity=0.187 Sum_probs=364.0
Q ss_pred ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717 2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQ 79 (580)
Q Consensus 2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 79 (580)
.|.++++|++|++++|.++ .++...+.++++|++|+|++|.+++... ...+++|++|++++|.++ .++...+..++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 128 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLI 128 (606)
T ss_dssp TTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCT
T ss_pred hccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCC
Confidence 5789999999999999999 5555556799999999999999998632 247899999999999998 45533356899
Q ss_pred CCcEEEcccCcCcc-ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCC----cEEEcccccCCCcCCccccCCCCC
Q 036717 80 KLVYMNISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSL----IWLDLSNNNFDGQIFPNYMNLTQL 154 (580)
Q Consensus 80 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L 154 (580)
+|++|++++|.+++ .+|..++++++|++|++++|.+++ ++...+..+++| ++|++++|.+++..+..+... +|
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L 206 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL 206 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcceeCcccccCc-ee
Confidence 99999999999986 569999999999999999999985 443334555554 489999999986655555444 88
Q ss_pred CEEeccCcccc----------------------------------------------------------ccccccccCCC
Q 036717 155 QLLYLDNNHFS----------------------------------------------------------GKIKDGLLRST 176 (580)
Q Consensus 155 ~~L~l~~n~l~----------------------------------------------------------~~~~~~l~~l~ 176 (580)
++|++++|.++ +..|. +..++
T Consensus 207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~ 285 (606)
T 3vq2_A 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLA 285 (606)
T ss_dssp EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGT
T ss_pred eeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCC
Confidence 88888887653 12232 56678
Q ss_pred CCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeC
Q 036717 177 ELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQN 256 (580)
Q Consensus 177 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 256 (580)
+|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.. ....+++|++|++++
T Consensus 286 ~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 286 NVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSR 359 (606)
T ss_dssp TCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCS
T ss_pred CCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcC
Confidence 9999999999997 455 788899999999999999 4777 45 8999999999999655544 334889999999999
Q ss_pred CcCccc--CChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCc-ccccCCCCCCEEEeeCCeecC
Q 036717 257 NALGGS--IPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP-HQLCRLRKLGIMDLSHNRLYG 333 (580)
Q Consensus 257 n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~ 333 (580)
|.+++. .+..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+++
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 999866 37888999999999999999884 56788899999999999999998877 688899999999999999998
Q ss_pred ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccccc
Q 036717 334 SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA 413 (580)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 413 (580)
..|..+... .+++.+++.++.+....... .+ ..+++|+
T Consensus 439 ~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~~---------------------------------~~--~~l~~L~ 476 (606)
T 3vq2_A 439 DFDGIFLGL-------TSLNTLKMAGNSFKDNTLSN---------------------------------VF--ANTTNLT 476 (606)
T ss_dssp CCTTTTTTC-------TTCCEEECTTCEEGGGEECS---------------------------------CC--TTCTTCC
T ss_pred cchhhhcCC-------CCCCEEECCCCcCCCcchHH---------------------------------hh--ccCCCCC
Confidence 888776654 24555555544432200000 00 1278999
Q ss_pred EEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCC-CCCEEeccCC
Q 036717 414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLSKFDVSYN 492 (580)
Q Consensus 414 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N 492 (580)
.|++++|++++..|..|+.+++|++|++++|++++.+|..|+++++|++|+|++|+++ .+|..+..++ +|++|++++|
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence 9999999999999999999999999999999999999999999999999999999999 6777799997 6999999999
Q ss_pred cccccCCCC
Q 036717 493 NLSGPIPDK 501 (580)
Q Consensus 493 ~l~~~~p~~ 501 (580)
++.|.|+..
T Consensus 556 ~~~c~c~~~ 564 (606)
T 3vq2_A 556 SVACICEHQ 564 (606)
T ss_dssp CCCCSSTTH
T ss_pred CcccCCccH
Confidence 999999863
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-48 Score=413.93 Aligned_cols=444 Identities=20% Similarity=0.199 Sum_probs=348.0
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM 84 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 84 (580)
++++.|++++|.++ .++...+.++++|++|+|++|.++++.. ...+++|++|++++|.++ .++...+..+++|++|
T Consensus 28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence 46889999999998 5555556689999999999998887633 246789999999999988 4554455688999999
Q ss_pred EcccCcCccccchhhhcCCCCCEEEcccCcCcc-ccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCC----CEEec
Q 036717 85 NISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAG-ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQL----QLLYL 159 (580)
Q Consensus 85 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~l 159 (580)
++++|++++..+..++++++|++|++++|.+++ .+|.. ++++++|++|++++|.+++..+..+..+++| ++|++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 999999886655578899999999999998874 35655 4788999999999999987777778777777 78999
Q ss_pred cCccccccccccccCCCCCCEEEcccC-----------------------------------------------------
Q 036717 160 DNNHFSGKIKDGLLRSTELMVLDISNN----------------------------------------------------- 186 (580)
Q Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~L~~n----------------------------------------------------- 186 (580)
++|.+++..+..+... +|+.|++++|
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 9998887777666554 6788877776
Q ss_pred -----CCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcc
Q 036717 187 -----RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGG 261 (580)
Q Consensus 187 -----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 261 (580)
.+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+...+. ..+++|++|++++|.+.+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccc
Confidence 223344566777888999999998887 577777777 89999999998885444 367889999999998876
Q ss_pred cCChhccCCCCccEEeCCCCcCcccC--chhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccCh-h
Q 036717 262 SIPNTFFRGSALETLDLRDNNFSGRI--PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA-C 338 (580)
Q Consensus 262 ~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~ 338 (580)
..+. ..+++|++|++++|++++.. |..+..+++|++|++++|.+++..+. +..+++|+.|++++|.+.+..|. .
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 5554 67789999999999888554 67788899999999999998865444 88899999999999998866552 3
Q ss_pred hhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEcc
Q 036717 339 ITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLS 418 (580)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 418 (580)
+... ..++.+++.++.+....... + ..+++|+.|+++
T Consensus 417 ~~~l-------~~L~~L~l~~n~l~~~~~~~----------------------------------~--~~l~~L~~L~l~ 453 (570)
T 2z63_A 417 FLSL-------RNLIYLDISHTHTRVAFNGI----------------------------------F--NGLSSLEVLKMA 453 (570)
T ss_dssp TTTC-------TTCCEEECTTSCCEECCTTT----------------------------------T--TTCTTCCEEECT
T ss_pred hhcC-------CCCCEEeCcCCcccccchhh----------------------------------h--hcCCcCcEEECc
Confidence 3322 23444444443332211100 0 127889999999
Q ss_pred CCcce-eeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCccccc
Q 036717 419 SNELT-GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGP 497 (580)
Q Consensus 419 ~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 497 (580)
+|.++ +.+|..+..+++|++|++++|++++..|..|+++++|++|++++|++++..|..+..+++|++|++++|+++|.
T Consensus 454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99997 57888999999999999999999988899999999999999999999988888899999999999999999999
Q ss_pred CCCCccc
Q 036717 498 IPDKEQF 504 (580)
Q Consensus 498 ~p~~~~~ 504 (580)
||....+
T Consensus 534 ~~~~~~~ 540 (570)
T 2z63_A 534 CPRIDYL 540 (570)
T ss_dssp TTTTHHH
T ss_pred CcchHHH
Confidence 9876443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-48 Score=415.29 Aligned_cols=422 Identities=21% Similarity=0.230 Sum_probs=342.2
Q ss_pred ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717 2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQ 79 (580)
Q Consensus 2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 79 (580)
.|.++++|++|++++|+++ .++...+.++++|++|+|++|.+++... ...+++|++|++++|.++ .++...+..++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccc
Confidence 4788999999999999998 5666667799999999999999987642 347899999999999998 56654456899
Q ss_pred CCcEEEcccCcCcc-ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCC----cEEEcccccCCCcCCccccCCCCC
Q 036717 80 KLVYMNISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSL----IWLDLSNNNFDGQIFPNYMNLTQL 154 (580)
Q Consensus 80 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L 154 (580)
+|++|++++|.+++ .+|..|+++++|++|++++|.++ .++...++.+++| +.|++++|.+.+..+..+... +|
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L 202 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cc
Confidence 99999999999987 46999999999999999999998 4544445777777 899999999988777776655 78
Q ss_pred CEEeccCc----------------------------------------------------------cccccccccccCCC
Q 036717 155 QLLYLDNN----------------------------------------------------------HFSGKIKDGLLRST 176 (580)
Q Consensus 155 ~~L~l~~n----------------------------------------------------------~l~~~~~~~l~~l~ 176 (580)
++|++++| .+.+..+..+..++
T Consensus 203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~ 282 (570)
T 2z63_A 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282 (570)
T ss_dssp EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence 88887776 22334456677789
Q ss_pred CCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeC
Q 036717 177 ELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQN 256 (580)
Q Consensus 177 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 256 (580)
+|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++
T Consensus 283 ~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~ 356 (570)
T 2z63_A 283 NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSR 356 (570)
T ss_dssp TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCS
T ss_pred cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcC
Confidence 9999999999988 577778888 9999999999987 4444 4678899999999988766554 5788999999999
Q ss_pred CcCcccC--ChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCc-ccccCCCCCCEEEeeCCeecC
Q 036717 257 NALGGSI--PNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP-HQLCRLRKLGIMDLSHNRLYG 333 (580)
Q Consensus 257 n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~ 333 (580)
|.+++.. +..+..+++|++|++++|.+++..+. +..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred CccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 9988654 67788899999999999998865444 8889999999999999887665 567889999999999999987
Q ss_pred ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccccc
Q 036717 334 SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA 413 (580)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 413 (580)
..|..+... ..++.+++.++.+...... ..+ ..+++|+
T Consensus 436 ~~~~~~~~l-------~~L~~L~l~~n~l~~~~~p---------------------------------~~~--~~l~~L~ 473 (570)
T 2z63_A 436 AFNGIFNGL-------SSLEVLKMAGNSFQENFLP---------------------------------DIF--TELRNLT 473 (570)
T ss_dssp CCTTTTTTC-------TTCCEEECTTCEEGGGEEC---------------------------------SCC--TTCTTCC
T ss_pred cchhhhhcC-------CcCcEEECcCCcCccccch---------------------------------hhh--hcccCCC
Confidence 777766553 2444444444432210000 001 1278999
Q ss_pred EEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCch
Q 036717 414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 476 (580)
Q Consensus 414 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 476 (580)
.|++++|++++..|..|..+++|++|++++|++++.+|..|.++++|+.|++++|.+++..|.
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999999999999999999999999998889999999999999999999987664
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-49 Score=426.70 Aligned_cols=442 Identities=20% Similarity=0.256 Sum_probs=299.5
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCC-----------CC-CCCCCccEEEccCCCCCccCChhH
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ-----------LT-GAQHGLLSLDISKNSFTGELPQNM 74 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~-~~~~~L~~L~L~~n~l~~~~~~~~ 74 (580)
.+++.|+|+++.++|.+|..+ .++++|++|+|++|.+.... ++ ..+..|+ +++++|.+.+.+|..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhH
Confidence 478999999999999999775 59999999999999762111 01 0123455 6666666665555443
Q ss_pred hhcCC------------------CCcEEEcc--cCcCccccchhhhcCCCCCEEEcccCcCccc----------------
Q 036717 75 GIVLQ------------------KLVYMNIS--KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGE---------------- 118 (580)
Q Consensus 75 ~~~l~------------------~L~~L~l~--~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------- 118 (580)
...+. .++.+.+. +|++++ +|.+++++++|++|++++|.+++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 31111 12222222 467776 777888888888888888888764
Q ss_pred -cchHHHh--CCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcc-ccc-cccccccCC------CCCCEEEcccCC
Q 036717 119 -LSQSLVT--NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNH-FSG-KIKDGLLRS------TELMVLDISNNR 187 (580)
Q Consensus 119 -~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~ 187 (580)
+|..+ . ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..+ ++|++|++++|.
T Consensus 238 ~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 238 YKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred cCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 66654 5 77888888888888887788888888888888888887 776 677766665 788888888888
Q ss_pred CCCCCch--hhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCC-CcEEEeeCCcCcccCC
Q 036717 188 LSGHIPS--WMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSS-VEHLYLQNNALGGSIP 264 (580)
Q Consensus 188 l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~ 264 (580)
++ .+|. .++.+++|++|++++|.+.+.+| .|..+++|++|++++|.++..+.....+++ |++|++++|.++ .+|
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccc
Confidence 87 6676 78888888888888888877777 777788888888888888755544447777 888888888887 667
Q ss_pred hhccCCC--CccEEeCCCCcCcccCchhhc-------cCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCcc
Q 036717 265 NTFFRGS--ALETLDLRDNNFSGRIPHQIN-------EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSI 335 (580)
Q Consensus 265 ~~~~~~~--~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 335 (580)
..+.... +|+.|++++|++++..|..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i 472 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI 472 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence 6666544 788888888888877777776 6678888888888887544444556788888888888886 55
Q ss_pred ChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEE
Q 036717 336 PACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGL 415 (580)
Q Consensus 336 p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 415 (580)
|.......... ...+++|+.|
T Consensus 473 ~~~~~~~~~~~-----------------------------------------------------------~~~l~~L~~L 493 (636)
T 4eco_A 473 PKNSLKDENEN-----------------------------------------------------------FKNTYLLTSI 493 (636)
T ss_dssp CSSSSEETTEE-----------------------------------------------------------CTTGGGCCEE
T ss_pred CHHHhcccccc-----------------------------------------------------------ccccCCccEE
Confidence 54322110000 0003356666
Q ss_pred EccCCcceeeCCcccc--cccCCCeEecccCcceecccccccCcccCCEEEC------CCCcccccCchhhcCCCCCCEE
Q 036717 416 DLSSNELTGNIPSEIG--DLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDL------SHNKLNGQIPPQLTELHSLSKF 487 (580)
Q Consensus 416 ~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L 487 (580)
++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|++|+| ++|++.+.+|..+..+++|++|
T Consensus 494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 66666666 4555554 66666666666666664 5666666666666666 3455566666666666666666
Q ss_pred eccCCcccccCCCCcccCCcCccccCCCCCCC
Q 036717 488 DVSYNNLSGPIPDKEQFSTFDESSYRGNLHLC 519 (580)
Q Consensus 488 ~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc 519 (580)
+|++|++ +.+|... +..+...++.+|+..|
T Consensus 572 ~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 572 QIGSNDI-RKVNEKI-TPNISVLDIKDNPNIS 601 (636)
T ss_dssp ECCSSCC-CBCCSCC-CTTCCEEECCSCTTCE
T ss_pred ECCCCcC-CccCHhH-hCcCCEEECcCCCCcc
Confidence 6666666 4555432 2444555555555444
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-46 Score=400.79 Aligned_cols=445 Identities=20% Similarity=0.203 Sum_probs=286.3
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM 84 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 84 (580)
++|++|++++|++++..|. .+.++++|++|+|++|.+++... ...+++|++|++++|.++ .++...+..+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEE
Confidence 4677778887777743333 34577777888887777776532 236677777888777777 4444444567777788
Q ss_pred EcccCcCcc-ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcc
Q 036717 85 NISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNH 163 (580)
Q Consensus 85 ~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (580)
++++|.+++ ..|..++++++|++|++++|.+.+.++...+.++++|++|++++|.+++..+..+..+++|++|+++.|.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 887777775 2456677777778888777775446665556777777777777777777777777777777777777777
Q ss_pred ccccccccccCCCCCCEEEcccCCCCCCC--c-hhhhcCCCCCEEEcccCcCCCcCc----hhccCCCCCcEEEccCCcC
Q 036717 164 FSGKIKDGLLRSTELMVLDISNNRLSGHI--P-SWMGNFSYLQILSMSKNLLEGNIP----VQFNDLLDLEILNISENNL 236 (580)
Q Consensus 164 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l 236 (580)
+.......+..+++|++|++++|.+.+.. + .....+++|+.|++++|.+.+..+ ..+..+++|+.+++++|.+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 65332222345677777777777776531 1 112335566666666665543222 2233455566666666555
Q ss_pred ccccCC-------ccCC-----------------------------CCCcEEEeeCCcCcccCChhc-cCCCCccEEeCC
Q 036717 237 SGSMIS-------TLNL-----------------------------SSVEHLYLQNNALGGSIPNTF-FRGSALETLDLR 279 (580)
Q Consensus 237 ~~~~~~-------~~~~-----------------------------~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~ 279 (580)
.+.... ...+ ++|++|++++|.+. .+|..+ ..+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 442110 0022 34555556555554 344433 345666666666
Q ss_pred CCcCcccCch---hhccCcCcceeecccccccccCc--ccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccc
Q 036717 280 DNNFSGRIPH---QINEHSNLRALLLRANYLQGPIP--HQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQ 354 (580)
Q Consensus 280 ~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~ 354 (580)
+|++++.+|. .++.+++|+.|++++|.+++..+ ..+..+++|+.|++++|+++ .+|..+... ..++.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~-------~~L~~ 414 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP-------EKMRF 414 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC-------TTCCE
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc-------ccccE
Confidence 6666554432 24555666666666666654322 33555666666666666665 344332221 12222
Q ss_pred cccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCccccccc
Q 036717 355 LDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQ 434 (580)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 434 (580)
..++.+++..+++...++|+.|++++|++++.+ ..++
T Consensus 415 ---------------------------------------L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~ 451 (549)
T 2z81_A 415 ---------------------------------------LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLP 451 (549)
T ss_dssp ---------------------------------------EECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCT
T ss_pred ---------------------------------------EECCCCCcccccchhcCCceEEECCCCChhhhc----ccCC
Confidence 233334444444444678999999999998643 5789
Q ss_pred CCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCc
Q 036717 435 NIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTF 507 (580)
Q Consensus 435 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 507 (580)
+|++|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..+..+++|++|++++|+++|.||...++..|
T Consensus 452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~ 522 (549)
T 2z81_A 452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522 (549)
T ss_dssp TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHH
Confidence 9999999999999 5676 467899999999999999999999999999999999999999999854444333
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.3e-48 Score=416.40 Aligned_cols=415 Identities=20% Similarity=0.259 Sum_probs=343.8
Q ss_pred ccccCCCCCEEECCCCCC------cc------cCchHHhhCCCCCcEEEccCCcccCCCCCCC-----------------
Q 036717 2 FLRHQFNLKYLDLSHNKL------AG------NFPTWLLENNTKLEVLYLINNSFSGFQLTGA----------------- 52 (580)
Q Consensus 2 ~l~~~~~L~~L~Ls~n~i------~~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------------- 52 (580)
.|.++++|++|+|++|.+ .| .+|... +..|+ +++++|.+.+. .+..
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~-~~~~~~~~~~~l~~~~l~~~~ 174 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYD-PREDFSDLIKDCINSDPQQKS 174 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCC-GGGGSCHHHHHHHHHCTTSCC
T ss_pred HHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccC-chhhHHHHHHHHhhcCccccc
Confidence 478999999999999976 33 445443 34455 66666655543 1111
Q ss_pred -----CCCccEEEcc--CCCCCccCChhHhhcCCCCcEEEcccCcCccc-----------------cchhhh--cCCCCC
Q 036717 53 -----QHGLLSLDIS--KNSFTGELPQNMGIVLQKLVYMNISKNSFEGN-----------------IPSSIA--KMQGLR 106 (580)
Q Consensus 53 -----~~~L~~L~L~--~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~ 106 (580)
...++.+.+. +|+++| +|..++ ++++|++|++++|.+++. +|..++ ++++|+
T Consensus 175 ~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~ 252 (636)
T 4eco_A 175 IKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252 (636)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred cccccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCC
Confidence 1122222222 578887 898875 799999999999999985 899988 999999
Q ss_pred EEEcccCcCccccchHHHhCCCCCcEEEccccc-CCC-cCCccccCC------CCCCEEeccCccccccccc--cccCCC
Q 036717 107 FLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNN-FDG-QIFPNYMNL------TQLQLLYLDNNHFSGKIKD--GLLRST 176 (580)
Q Consensus 107 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~ 176 (580)
+|++++|.+.+.+|..+ .++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .+..++
T Consensus 253 ~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~ 330 (636)
T 4eco_A 253 DVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK 330 (636)
T ss_dssp EEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT
T ss_pred EEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC
Confidence 99999999998899764 799999999999998 887 788877776 99999999999999 7888 899999
Q ss_pred CCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCC-CcEEEccCCcCccccCCccC--CCCCcEEE
Q 036717 177 ELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD-LEILNISENNLSGSMISTLN--LSSVEHLY 253 (580)
Q Consensus 177 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~--~~~L~~L~ 253 (580)
+|++|++++|.+.+.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++..+..... +++|++|+
T Consensus 331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEE
T ss_pred CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEE
Confidence 99999999999998888 8999999999999999998 78888999999 99999999999965543333 45899999
Q ss_pred eeCCcCcccCChhcc-------CCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcc-cccCCC------
Q 036717 254 LQNNALGGSIPNTFF-------RGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH-QLCRLR------ 319 (580)
Q Consensus 254 l~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~------ 319 (580)
+++|.+++..|..+. .+++|+.|++++|+++...+..+..+++|+.|++++|.++ .+|. .+....
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNT 487 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTG
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccccc
Confidence 999999998888888 7789999999999999544455667999999999999999 4554 343332
Q ss_pred -CCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeec
Q 036717 320 -KLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTK 398 (580)
Q Consensus 320 -~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (580)
+|+.|++++|+++ .+|..+..
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~--------------------------------------------------------- 509 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRA--------------------------------------------------------- 509 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGST---------------------------------------------------------
T ss_pred CCccEEECcCCcCC-ccChhhhh---------------------------------------------------------
Confidence 9999999999998 67765431
Q ss_pred cccceecccccccccEEEccCCcceeeCCcccccccCCCeEec------ccCcceecccccccCcccCCEEECCCCcccc
Q 036717 399 NRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNL------SYNFLSGSIPESFSNLKMIESLDLSHNKLNG 472 (580)
Q Consensus 399 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 472 (580)
..+++|+.|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..++++++|++|+|++|++ +
T Consensus 510 --------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~ 579 (636)
T 4eco_A 510 --------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-R 579 (636)
T ss_dssp --------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred --------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-C
Confidence 017899999999999997 8999999999999999 56888999999999999999999999999 5
Q ss_pred cCchhhcCCCCCCEEeccCCcccccC
Q 036717 473 QIPPQLTELHSLSKFDVSYNNLSGPI 498 (580)
Q Consensus 473 ~~p~~l~~l~~L~~L~Ls~N~l~~~~ 498 (580)
.+|..+. ++|++||+++|++.+.-
T Consensus 580 ~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 580 KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred ccCHhHh--CcCCEEECcCCCCcccc
Confidence 7888766 79999999999988643
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.7e-46 Score=407.44 Aligned_cols=412 Identities=19% Similarity=0.252 Sum_probs=343.1
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEc-cCCcccCCCCCC----------------------------------
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYL-INNSFSGFQLTG---------------------------------- 51 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~---------------------------------- 51 (580)
.+++.|+|+++.++|.+|..+. ++++|++|+| ++|.+++.....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~-~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGG-GCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHh-ccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5789999999999999998764 9999999999 888766541110
Q ss_pred -------------------CCCCccEEEcc--CCCCCccCChhHhhcCCCCcEEEcccCcCcc-----------------
Q 036717 52 -------------------AQHGLLSLDIS--KNSFTGELPQNMGIVLQKLVYMNISKNSFEG----------------- 93 (580)
Q Consensus 52 -------------------~~~~L~~L~L~--~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------- 93 (580)
....++.+.+. +|.+++ +|..+. ++++|++|++++|++++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 11223333343 377886 898765 89999999999999998
Q ss_pred ccchhhh--cCCCCCEEEcccCcCccccchHHHhCCCCCcEEEccccc-CCC-cCCccccC-------CCCCCEEeccCc
Q 036717 94 NIPSSIA--KMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNN-FDG-QIFPNYMN-------LTQLQLLYLDNN 162 (580)
Q Consensus 94 ~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~l~~n 162 (580)
.+|..++ ++++|++|+|++|.+.+.+|.. +.++++|++|++++|+ +++ .+|..+.. +++|++|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3888877 9999999999999999899966 4899999999999998 887 67765554 459999999999
Q ss_pred cccccccc--cccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCC-CcEEEccCCcCccc
Q 036717 163 HFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD-LEILNISENNLSGS 239 (580)
Q Consensus 163 ~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~ 239 (580)
.++ .+|. .+..+++|+.|++++|.+. .+| .|+.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++..
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI 634 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC
Confidence 999 7888 8999999999999999999 778 8999999999999999998 88888999999 99999999999965
Q ss_pred cCCccCC--CCCcEEEeeCCcCcccCChhc---c--CCCCccEEeCCCCcCcccCchh-hccCcCcceeecccccccccC
Q 036717 240 MISTLNL--SSVEHLYLQNNALGGSIPNTF---F--RGSALETLDLRDNNFSGRIPHQ-INEHSNLRALLLRANYLQGPI 311 (580)
Q Consensus 240 ~~~~~~~--~~L~~L~l~~n~l~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~ 311 (580)
+...... ++|+.|++++|.+.+.+|... . .+++|+.|++++|+++ .+|.. +..+++|+.|++++|.++ .+
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 5333333 459999999999987665322 2 3458999999999999 55554 458999999999999999 55
Q ss_pred cccccCC--------CCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccch
Q 036717 312 PHQLCRL--------RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESD 383 (580)
Q Consensus 312 ~~~~~~l--------~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (580)
|..+... ++|+.|++++|+++ .+|..+..
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------------ 749 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------------ 749 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------------------------------------------
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhh------------------------------------------
Confidence 5544332 38999999999998 67765431
Q ss_pred hhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEeccc------CcceecccccccCc
Q 036717 384 LRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSY------NFLSGSIPESFSNL 457 (580)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l 457 (580)
..+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |.+.+.+|..|.++
T Consensus 750 -----------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 750 -----------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp -----------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred -----------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 017899999999999997 798999999999999976 88899999999999
Q ss_pred ccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccC
Q 036717 458 KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPI 498 (580)
Q Consensus 458 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 498 (580)
++|+.|+|++|++ +.+|..+. ++|+.|||++|++...-
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred CCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 9999999999999 68888765 69999999999987543
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=390.46 Aligned_cols=412 Identities=20% Similarity=0.217 Sum_probs=303.1
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM 84 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 84 (580)
++|++|++++|.++ .++...+.++++|++|+|++|+++++.. ...+++|++|++++|+++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence 67888999988888 5555556688889999999888887622 247788899999998888 67765 58889999
Q ss_pred EcccCcCcc-ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCC--cEEEcccccC--CCcCCccccC---------
Q 036717 85 NISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSL--IWLDLSNNNF--DGQIFPNYMN--------- 150 (580)
Q Consensus 85 ~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~--------- 150 (580)
++++|++++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 999988886 467888888999999998888874 224667777 8888888888 5555555544
Q ss_pred -----------------CCCCCEEeccCcc-------ccccccccccCCCCCCEEEcccCCCCCCCchhhh---cCCCCC
Q 036717 151 -----------------LTQLQLLYLDNNH-------FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG---NFSYLQ 203 (580)
Q Consensus 151 -----------------l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~ 203 (580)
+++|+.|++++|. +.+.++ .+..+++|+.|++++|.+.+..+..+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 4455555555554 333333 455566666666666655432221111 135777
Q ss_pred EEEcccCcCCCcCchhc-----cCCCCCcEEEccCCcCccccCCcc----CCCCCcEEEeeCCcCcccCChhccCCCCcc
Q 036717 204 ILSMSKNLLEGNIPVQF-----NDLLDLEILNISENNLSGSMISTL----NLSSVEHLYLQNNALGGSIPNTFFRGSALE 274 (580)
Q Consensus 204 ~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 274 (580)
+|++++|.+.+.+|..+ ..+++|+.+++++|.+ ..+...+ ...+|+.|++++|.+.... .+..+++|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~ 327 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL 327 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence 77777777776777766 6777777777777777 2221111 2256888888888776332 125677888
Q ss_pred EEeCCCCcCcccCchhhccCcCcceeecccccccc--cCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCc
Q 036717 275 TLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQG--PIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL 352 (580)
Q Consensus 275 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~ 352 (580)
+|++++|++++..|..+..+++|+.|++++|.+++ .+|..+..+++|+.|++++|.+++.+|....
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~------------ 395 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC------------ 395 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC------------
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh------------
Confidence 88888888887778888888888888888888875 4556778888888888888888765554210
Q ss_pred cccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCccccc
Q 036717 353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD 432 (580)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 432 (580)
..+++|+.|++++|++++..|..+.
T Consensus 396 ------------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~- 420 (520)
T 2z7x_B 396 ------------------------------------------------------SWTKSLLSLNMSSNILTDTIFRCLP- 420 (520)
T ss_dssp ------------------------------------------------------CCCTTCCEEECCSSCCCGGGGGSCC-
T ss_pred ------------------------------------------------------ccCccCCEEECcCCCCCcchhhhhc-
Confidence 0167899999999999988877665
Q ss_pred ccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717 433 LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 433 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 500 (580)
++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++|.|+.
T Consensus 421 -~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 421 -PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp -TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred -ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 79999999999999 7888788999999999999999954444499999999999999999998874
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-44 Score=374.38 Aligned_cols=379 Identities=20% Similarity=0.260 Sum_probs=314.4
Q ss_pred cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717 57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS 136 (580)
Q Consensus 57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 136 (580)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 45777777777 6776 2 47888888888888877788888888888888888888767777667888889999998
Q ss_pred cccCCCcCCccccCCCCCCEEeccCcccccccccc--ccCCCCCCEEEcccCCCCCCCchh-hhcCCCCCEEEcccCcCC
Q 036717 137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDG--LLRSTELMVLDISNNRLSGHIPSW-MGNFSYLQILSMSKNLLE 213 (580)
Q Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~ 213 (580)
+|.+++..+..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 88888777888888889999999998888654444 788889999999999888776765 788889999999999888
Q ss_pred CcCchhccCC--CCCcEEEccCCcCccccCCc---------cCCCCCcEEEeeCCcCcccCChhccCC---CCccEEeCC
Q 036717 214 GNIPVQFNDL--LDLEILNISENNLSGSMIST---------LNLSSVEHLYLQNNALGGSIPNTFFRG---SALETLDLR 279 (580)
Q Consensus 214 ~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~---------~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~ 279 (580)
+..+..+..+ .+++.+++++|.+.+..+.. +.+++|++|++++|.+++..|..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777777665 67888999998888765443 245789999999999988777766543 789999999
Q ss_pred CCcCccc----------Cchhhcc--CcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhccccc
Q 036717 280 DNNFSGR----------IPHQINE--HSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV 347 (580)
Q Consensus 280 ~n~l~~~----------~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~ 347 (580)
+|.+.+. .+..+.. .++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------ 321 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------ 321 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC------
Confidence 8865432 1222222 368999999999999999999999999999999999998666655433
Q ss_pred CCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCC
Q 036717 348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIP 427 (580)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 427 (580)
+++|+.|++++|.+++..|
T Consensus 322 -------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 322 -------------------------------------------------------------LTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp -------------------------------------------------------------CTTCCEEECCSSCCCEECG
T ss_pred -------------------------------------------------------------cccCCEEECCCCccCCcCh
Confidence 6789999999999999989
Q ss_pred cccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCc
Q 036717 428 SEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTF 507 (580)
Q Consensus 428 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 507 (580)
..|+.+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|+++|.||...++..|
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 420 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 420 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999887888899999999999999999999976555444
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-44 Score=384.03 Aligned_cols=478 Identities=16% Similarity=0.143 Sum_probs=337.0
Q ss_pred CCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcE
Q 036717 6 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVY 83 (580)
Q Consensus 6 ~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 83 (580)
|+...+.|.+++.++ .+|..+ .++|++|+|++|.+++... ...+++|++|++++|.+++ ++...+..+++|++
T Consensus 4 C~~~~~c~~~~~~l~-~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 4 CDASGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEH 78 (549)
T ss_dssp ECTTSEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred CCCCceEECCCCccc-cccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCE
Confidence 566667899999998 899854 3799999999999987632 2478999999999999995 44444458999999
Q ss_pred EEcccCcCccccchhhhcCCCCCEEEcccCcCccc-cchHHHhCCCCCcEEEcccccCCCcC-CccccCCCCCCEEeccC
Q 036717 84 MNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGE-LSQSLVTNCFSLIWLDLSNNNFDGQI-FPNYMNLTQLQLLYLDN 161 (580)
Q Consensus 84 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~ 161 (580)
|++++|++++..|..|+++++|++|++++|.+++. ++. .+.++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 99999999988888899999999999999999842 333 4589999999999999854444 46899999999999999
Q ss_pred ccccccccccccCCCCCCEEEcccCCCCCCCchh-hhcCCCCCEEEcccCcCCCcC--c-hhccCCCCCcEEEccCCcCc
Q 036717 162 NHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW-MGNFSYLQILSMSKNLLEGNI--P-VQFNDLLDLEILNISENNLS 237 (580)
Q Consensus 162 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~-~~~~~l~~L~~L~l~~n~l~ 237 (580)
|.+++..|..+..+++|++|++++|.+.. +|.. +..+++|++|++++|.+++.. + .....+++|+.|++++|.++
T Consensus 158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 99999899999999999999999999874 4444 467999999999999998642 1 23345789999999999987
Q ss_pred cccCCc-----cCCCCCcEEEeeCCcCcccC------ChhccCCCCccEEeCCCCcCccc-----CchhhccCcCcceee
Q 036717 238 GSMIST-----LNLSSVEHLYLQNNALGGSI------PNTFFRGSALETLDLRDNNFSGR-----IPHQINEHSNLRALL 301 (580)
Q Consensus 238 ~~~~~~-----~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~ 301 (580)
+..+.. ..+++|+.+++++|.+.+.. ...+..+++++.|++.++.+... ++..+...++|+.|+
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 643322 26789999999999876531 12234455666666666554321 111223344566666
Q ss_pred cccccccccCcccc-cCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccc----hhhcccccc
Q 036717 302 LRANYLQGPIPHQL-CRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDI----RDYYNSTVQ 376 (580)
Q Consensus 302 l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~ 376 (580)
+++|.++ .+|..+ ..+++|+.|++++|++++.+|...... .....++.+++.++.+...+. ......++.
T Consensus 317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK----GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT----TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCE
T ss_pred eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhh----hccccCcEEEccCCcccccccchhhhhcCCCCCE
Confidence 6666555 344333 345666666666666654443221000 011234444444444443221 111122222
Q ss_pred cccccchhhhhccccEEEEeeccccceecc--cccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccc
Q 036717 377 LRLDESDLRWLVKQVEVNFMTKNRYESYKG--VILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESF 454 (580)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 454 (580)
++++.+ .+..++. ..+++|+.|++++|+++ .+|..+. ++|++|++++|++++.+
T Consensus 392 L~Ls~N-----------------~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~---- 447 (549)
T 2z81_A 392 LDISRN-----------------TFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS---- 447 (549)
T ss_dssp EECTTC-----------------CCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----
T ss_pred EECCCC-----------------CCccCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----
Confidence 222222 2222221 12678889999999887 3444432 58899999999888643
Q ss_pred cCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCC-cccCCcCccccCCCCCCCCC
Q 036717 455 SNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK-EQFSTFDESSYRGNLHLCGP 521 (580)
Q Consensus 455 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~ 521 (580)
..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|.. ..+..+...++.+|++.|+.
T Consensus 448 ~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 448 LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 57899999999999998 5665 467899999999999999877753 45566677777777776654
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-44 Score=392.54 Aligned_cols=361 Identities=20% Similarity=0.240 Sum_probs=281.4
Q ss_pred CcCccccchhhhcCCCCCEEEcccCcCcc-----------------ccchHH-HhCCCCCcEEEcccccCCCcCCccccC
Q 036717 89 NSFEGNIPSSIAKMQGLRFLDVSTNNFAG-----------------ELSQSL-VTNCFSLIWLDLSNNNFDGQIFPNYMN 150 (580)
Q Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~ 150 (580)
|.+++ +|..++++++|++|+|++|.+++ .+|..+ |.++++|++|++++|.+.+.+|..|.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 55665 78888888888888888888886 277665 347888888888888888888888888
Q ss_pred CCCCCEEeccCcc-ccc-cccccccCC-------CCCCEEEcccCCCCCCCch--hhhcCCCCCEEEcccCcCCCcCchh
Q 036717 151 LTQLQLLYLDNNH-FSG-KIKDGLLRS-------TELMVLDISNNRLSGHIPS--WMGNFSYLQILSMSKNLLEGNIPVQ 219 (580)
Q Consensus 151 l~~L~~L~l~~n~-l~~-~~~~~l~~l-------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~ 219 (580)
+++|++|++++|+ +++ .+|..+..+ ++|++|++++|.+. .+|. .++.+++|+.|++++|.++ .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 8888888888887 776 666655444 48888888888888 6777 7888888888888888887 666 7
Q ss_pred ccCCCCCcEEEccCCcCccccCCccCCCC-CcEEEeeCCcCcccCChhccCCCC--ccEEeCCCCcCcccCchhh---c-
Q 036717 220 FNDLLDLEILNISENNLSGSMISTLNLSS-VEHLYLQNNALGGSIPNTFFRGSA--LETLDLRDNNFSGRIPHQI---N- 292 (580)
Q Consensus 220 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~---~- 292 (580)
|..+++|+.|++++|.+...+.....+++ |++|++++|.++ .+|..+...+. |+.|++++|++++.+|... .
T Consensus 591 ~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 88888888888888888855545447777 888888888887 67777666543 8888888888887655322 2
Q ss_pred -cCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhc
Q 036717 293 -EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYY 371 (580)
Q Consensus 293 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 371 (580)
.+++|+.|++++|.++...+..+..+++|+.|++++|+++ .+|..+......
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~-------------------------- 722 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG-------------------------- 722 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS--------------------------
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc--------------------------
Confidence 3347888888888888433333457888888888888887 566543221000
Q ss_pred ccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccc--cccCCCeEecccCcceec
Q 036717 372 NSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIG--DLQNIHGLNLSYNFLSGS 449 (580)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~ 449 (580)
....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|.+++
T Consensus 723 ---------------------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~- 767 (876)
T 4ecn_A 723 ---------------------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS- 767 (876)
T ss_dssp ---------------------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred ---------------------------------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-
Confidence 0011568999999999999 7888887 99999999999999997
Q ss_pred ccccccCcccCCEEECCC------CcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccccCCCCCC
Q 036717 450 IPESFSNLKMIESLDLSH------NKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHL 518 (580)
Q Consensus 450 ~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 518 (580)
+|..+.++++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|... +..+...++.+|+..
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNI 840 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTC
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCC
Confidence 799999999999999976 889999999999999999999999999 7888762 356666777777643
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-44 Score=382.17 Aligned_cols=449 Identities=20% Similarity=0.221 Sum_probs=334.0
Q ss_pred CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717 10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS 87 (580)
Q Consensus 10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 87 (580)
++||+++|+++ .+|..+. ++|++|+|++|.+++... ...+++|++|++++|++++..|..+ ..+++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecC
Confidence 68999999999 7887543 899999999999988632 2478999999999999995445544 589999999999
Q ss_pred cCcCccccchhhhcCCCCCEEEcccCcCcc-ccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCC--CEEeccCccc
Q 036717 88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAG-ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQL--QLLYLDNNHF 164 (580)
Q Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l 164 (580)
+|+++ .+|.. .+++|++|++++|.+++ .+|.. ++++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 99998 56665 89999999999999985 35554 5889999999999999875 456677777 9999999998
Q ss_pred --cccccccccCCC-CCCEEEcccCCCCCCCc-hhhhcCCCCCEEEcccCc-------CCCcCchhccCCCCCcEEEccC
Q 036717 165 --SGKIKDGLLRST-ELMVLDISNNRLSGHIP-SWMGNFSYLQILSMSKNL-------LEGNIPVQFNDLLDLEILNISE 233 (580)
Q Consensus 165 --~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~ 233 (580)
.+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.|++++|. +.+.++ .+..+++|+.|++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 777777776655 34456777777765443 356678888888888886 444444 677888888888888
Q ss_pred CcCccccCCcc----CCCCCcEEEeeCCcCcccCChhc-----cCCCCccEEeCCCCcCcccCc-hhhccC---cCccee
Q 036717 234 NNLSGSMISTL----NLSSVEHLYLQNNALGGSIPNTF-----FRGSALETLDLRDNNFSGRIP-HQINEH---SNLRAL 300 (580)
Q Consensus 234 n~l~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~~~~~---~~L~~L 300 (580)
|.+.+...... ..++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| .++..+ ++|+.|
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 87765332211 34588888888888887788777 7788888888888887 344 444443 567777
Q ss_pred ecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccc
Q 036717 301 LLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLD 380 (580)
Q Consensus 301 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (580)
++++|.+.... .+..+++|++|++++|++++.+|..+... ..++.+++.++.+...+....
T Consensus 308 ~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-------~~L~~L~L~~N~l~~l~~~~~---------- 368 (520)
T 2z7x_B 308 TVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHL-------TELETLILQMNQLKELSKIAE---------- 368 (520)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCC-------SSCCEEECCSSCCCBHHHHHH----------
T ss_pred EcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccC-------CCCCEEEccCCccCccccchH----------
Confidence 77777765432 12566777788888887776666655432 244444444444432211000
Q ss_pred cchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCc-ccccccCCCeEecccCcceecccccccCccc
Q 036717 381 ESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPS-EIGDLQNIHGLNLSYNFLSGSIPESFSNLKM 459 (580)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 459 (580)
.+ ..+++|+.|++++|.+++.+|. .+..+++|++|++++|.+++..|..+. ++
T Consensus 369 ----------------------~~--~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~ 422 (520)
T 2z7x_B 369 ----------------------MT--TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR 422 (520)
T ss_dssp ----------------------HH--TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred ----------------------HH--hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence 00 1278999999999999985665 588999999999999999988888775 79
Q ss_pred CCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCC--cccCCcCccccCCCCCCCC
Q 036717 460 IESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK--EQFSTFDESSYRGNLHLCG 520 (580)
Q Consensus 460 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~~~~~~~~~~n~~lc~ 520 (580)
|+.|+|++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+......+|+..|.
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 999999999999 78888889999999999999999 46653 3344555566666665553
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-43 Score=385.81 Aligned_cols=449 Identities=21% Similarity=0.185 Sum_probs=314.6
Q ss_pred CCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC--CCCCCccEEEccCCCCCccCChhHhhcCCCCcEEE
Q 036717 8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMN 85 (580)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 85 (580)
++++|||++|+|+ .+|...|.++++|++|+|++|+|++++.. ..+++|++|+|++|+++ .+|...|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence 7899999999998 77777778999999999999999887432 47889999999999998 68877777899999999
Q ss_pred cccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCC----CEEeccC
Q 036717 86 ISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQL----QLLYLDN 161 (580)
Q Consensus 86 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~l~~ 161 (580)
+++|++++..+..|+++++|++|++++|.+++......+..+++|++|++++|++++..+..+..+.++ ..++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999999987777899999999999999998743333445789999999999999987777766544433 3566666
Q ss_pred ccccccccccccCCCCCCEEEcccCCCCC---------------------------------------------------
Q 036717 162 NHFSGKIKDGLLRSTELMVLDISNNRLSG--------------------------------------------------- 190 (580)
Q Consensus 162 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--------------------------------------------------- 190 (580)
|.+....+..+ ....++.+++.+|....
T Consensus 211 n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 211 NPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp CCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred CcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 66553322221 11222223322221100
Q ss_pred -------CCch----------------------hhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccC
Q 036717 191 -------HIPS----------------------WMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241 (580)
Q Consensus 191 -------~~~~----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 241 (580)
..+. .+.....++.|++.+|.+....+ ..+..|+.+++..|.+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~- 365 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF- 365 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC-
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc-
Confidence 0001 12223334444444444332211 12334445555544443322
Q ss_pred CccCCCCCcEEEeeCCcCcc--cCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCc-ccccCC
Q 036717 242 STLNLSSVEHLYLQNNALGG--SIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP-HQLCRL 318 (580)
Q Consensus 242 ~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l 318 (580)
....+++|+.+++++|.+.. ..+..+....+|+.+++..+.... .+..+..+++|+.+++..+......+ ..+..+
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccc
Confidence 22357888999999888753 345666777888899988888764 44567778888888888876664443 456778
Q ss_pred CCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeec
Q 036717 319 RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTK 398 (580)
Q Consensus 319 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (580)
++++.++++.|.+.+..|..+.... .++.+++.++........
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~-------~L~~L~Ls~N~~~~~~~~------------------------------ 487 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLS-------SLEVLKMAGNSFQENFLP------------------------------ 487 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCT-------TCCEEECTTCEEGGGEEC------------------------------
T ss_pred cccccccccccccccccccccccch-------hhhhhhhhhcccccccCc------------------------------
Confidence 8888888888888766665444321 222222222211100000
Q ss_pred cccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhh
Q 036717 399 NRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 478 (580)
Q Consensus 399 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 478 (580)
..+ ..+++|+.|+|++|++++..|..|+++++|++|+|++|++++..|..|+++++|++|||++|+|++..|+.+
T Consensus 488 ---~~~--~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 488 ---DIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp ---SCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred ---hhh--hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 001 127889999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred cCC-CCCCEEeccCCcccccCCCCcccCCc
Q 036717 479 TEL-HSLSKFDVSYNNLSGPIPDKEQFSTF 507 (580)
Q Consensus 479 ~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~ 507 (580)
..+ ++|++|+|++|+++|.|.. .+|..|
T Consensus 563 ~~l~~~L~~L~L~~Np~~C~C~~-~~~~~w 591 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQNDFACTCEH-QSFLQW 591 (635)
T ss_dssp TCCCTTCCEEECTTCCBCCSGGG-HHHHHH
T ss_pred HhhhCcCCEEEeeCCCCcccCCc-HHHHHH
Confidence 988 6899999999999999963 334433
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.9e-43 Score=375.48 Aligned_cols=440 Identities=21% Similarity=0.233 Sum_probs=297.2
Q ss_pred CCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcE
Q 036717 6 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVY 83 (580)
Q Consensus 6 ~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 83 (580)
+...+++++++|.++ .+|..+ .++|++|+|++|.++++.. ...+++|++|++++|.+++..|. .+..+++|++
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCE
Confidence 445588999999998 688754 3789999999999988742 24788999999999999844344 4457899999
Q ss_pred EEcccCcCccccchhhhcCCCCCEEEcccCcCccccc-hHHHhCCCCCcEEEcccccCCCcCCccccCCCCC--CEEecc
Q 036717 84 MNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS-QSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQL--QLLYLD 160 (580)
Q Consensus 84 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~l~ 160 (580)
|++++|+++ .+|.. .+++|++|++++|.++ .++ ...+.++++|++|++++|.+++. .+..+++| ++|+++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 999999998 56655 7899999999999988 433 23458899999999999998753 34445555 999999
Q ss_pred Cccc--cccccccccCC--------------------------CCCCEEEcccCCCCC----CCchhhhcCC--------
Q 036717 161 NNHF--SGKIKDGLLRS--------------------------TELMVLDISNNRLSG----HIPSWMGNFS-------- 200 (580)
Q Consensus 161 ~n~l--~~~~~~~l~~l--------------------------~~L~~L~L~~n~l~~----~~~~~~~~l~-------- 200 (580)
+|.+ ++..|..+..+ ++|+.+++++|.... .....+..++
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9988 66666555443 345555555543100 0011223333
Q ss_pred -------------------CCCEEEcccCcCCCcCchhc-----cCCCCCcEEEccCCcCccccCCcc----CCCCCcEE
Q 036717 201 -------------------YLQILSMSKNLLEGNIPVQF-----NDLLDLEILNISENNLSGSMISTL----NLSSVEHL 252 (580)
Q Consensus 201 -------------------~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~----~~~~L~~L 252 (580)
+|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ ..+.... ...+|++|
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEE
Confidence 34444444444444444333 2333333333333332 1110000 12457777
Q ss_pred EeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccccc--CcccccCCCCCCEEEeeCCe
Q 036717 253 YLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGP--IPHQLCRLRKLGIMDLSHNR 330 (580)
Q Consensus 253 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~ 330 (580)
++++|.+.... ....+++|++|++++|++++..|..+..+++|+.|++++|.+++. +|..+..+++|+.|++++|+
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 77777765321 125667788888888888877777778888888888888887753 34567778888888888888
Q ss_pred ecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccc
Q 036717 331 LYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILE 410 (580)
Q Consensus 331 l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 410 (580)
+++.+|.... ..++
T Consensus 415 l~~~~~~~~~------------------------------------------------------------------~~l~ 428 (562)
T 3a79_B 415 LNSHAYDRTC------------------------------------------------------------------AWAE 428 (562)
T ss_dssp CBSCCSSCCC------------------------------------------------------------------CCCT
T ss_pred CCCccChhhh------------------------------------------------------------------cCcc
Confidence 7754553211 1168
Q ss_pred cccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEecc
Q 036717 411 HMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVS 490 (580)
Q Consensus 411 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 490 (580)
+|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+.++++|++|+|++|++++..+..+..+++|++|+++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 899999999999987777665 79999999999999 677777799999999999999995444449999999999999
Q ss_pred CCcccccCCCCcccCCcCccc--cCCCCCCCCCCCCCCCCC
Q 036717 491 YNNLSGPIPDKEQFSTFDESS--YRGNLHLCGPPINKSCTN 529 (580)
Q Consensus 491 ~N~l~~~~p~~~~~~~~~~~~--~~~n~~lc~~~~~~~C~~ 529 (580)
+|+++|.||..+.+..|.... ...+...|+.|....|..
T Consensus 506 ~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 506 DNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp SCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred CCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 999999998543323231110 011122346677778865
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-41 Score=353.92 Aligned_cols=381 Identities=20% Similarity=0.212 Sum_probs=294.3
Q ss_pred CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717 10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS 87 (580)
Q Consensus 10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 87 (580)
+.++.+++.++ .+|. . .++|++|+|++|.+++... ...+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 46777888887 7775 2 3778888888888876522 24678888888888888767766666678888888888
Q ss_pred cCcCccccchhhhcCCCCCEEEcccCcCccccch-HHHhCCCCCcEEEcccccCCCcCCcc-ccCCCCCCEEeccCcccc
Q 036717 88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ-SLVTNCFSLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFS 165 (580)
Q Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~ 165 (580)
+|++++..|..|+++++|++|++++|.+++.++. ..+..+++|++|++++|.+++..+.. +.++++|++|++++|.++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 8888877788888888888888888888754433 23567888888888888888766655 678888888888888888
Q ss_pred ccccccccCC--CCCCEEEcccCCCCCCCchhh--------hcCCCCCEEEcccCcCCCcCchhccCC---CCCcEEEcc
Q 036717 166 GKIKDGLLRS--TELMVLDISNNRLSGHIPSWM--------GNFSYLQILSMSKNLLEGNIPVQFNDL---LDLEILNIS 232 (580)
Q Consensus 166 ~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~ 232 (580)
+..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+... ++++.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777766554 678888888888775444332 245677888888887776666655433 677777777
Q ss_pred CCcCccccCCccCCCCCcEEEeeCCcCcccCChhcc--CCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccccc
Q 036717 233 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFF--RGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGP 310 (580)
Q Consensus 233 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 310 (580)
+|...+...... .+.+..+..+. ..++|+.|++++|++++..|..+..+++|++|++++|.+++.
T Consensus 248 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 248 NSYNMGSSFGHT-------------NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp TCTTTSCCTTCC-------------SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccccccchh-------------hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 776554322211 11112222222 236899999999999988899999999999999999999988
Q ss_pred CcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccc
Q 036717 311 IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQ 390 (580)
Q Consensus 311 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (580)
.+..+..+++|+.|++++|.+++..|..+..
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------- 345 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN------------------------------------------------- 345 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTT-------------------------------------------------
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcC-------------------------------------------------
Confidence 8889999999999999999997655554433
Q ss_pred cEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcc
Q 036717 391 VEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL 470 (580)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 470 (580)
+++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|++|++
T Consensus 346 ------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 346 ------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp ------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 67899999999999999999999999999999999999987778889999999999999999
Q ss_pred cccCc
Q 036717 471 NGQIP 475 (580)
Q Consensus 471 ~~~~p 475 (580)
++..|
T Consensus 408 ~~~~~ 412 (455)
T 3v47_A 408 DCSCP 412 (455)
T ss_dssp CCCTT
T ss_pred ccCCC
Confidence 98876
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-40 Score=359.49 Aligned_cols=457 Identities=20% Similarity=0.173 Sum_probs=293.9
Q ss_pred CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC--CCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717 10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS 87 (580)
Q Consensus 10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 87 (580)
+..+-++.+++ .+|..+ -+.+++|+|++|+|+++... ..+++|++|||++|+|+ .+|...|.++++|++|+|+
T Consensus 34 ~~~~c~~~~l~-~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 34 ITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp TEEECTTSCCS-SCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCCcC-ccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEcc
Confidence 34566666777 777632 14688888888888876432 36788888888888888 6777666788888888888
Q ss_pred cCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCc-CCccccCCCCCCEEeccCccccc
Q 036717 88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQ-IFPNYMNLTQLQLLYLDNNHFSG 166 (580)
Q Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 166 (580)
+|++++..+.+|+++++|++|++++|+++ .++...++++++|++|++++|.++.. .+..+..+++|++|++++|++++
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 88888776777888888888888888887 56666668888888888888888753 45677788888888888888887
Q ss_pred cccccccCCCC----CCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCc---------------------------
Q 036717 167 KIKDGLLRSTE----LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN--------------------------- 215 (580)
Q Consensus 167 ~~~~~l~~l~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------- 215 (580)
..+..+..+.+ ...++++.|.+....+..+. ...++.+++.+|.....
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred cccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 77766654433 34678888887744333222 22333444433321100
Q ss_pred -------------------------------CchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCC
Q 036717 216 -------------------------------IPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIP 264 (580)
Q Consensus 216 -------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 264 (580)
....+....+++.+++.++.+..... ......++.|++.+|.+....+
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCC
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCc
Confidence 00111222334444444444332221 1134456666666666553322
Q ss_pred hh-------------------ccCCCCccEEeCCCCcCc--ccCchhhccCcCcceeecccccccccCcccccCCCCCCE
Q 036717 265 NT-------------------FFRGSALETLDLRDNNFS--GRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGI 323 (580)
Q Consensus 265 ~~-------------------~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 323 (580)
.. ...+++|+.+++++|.+. +..+..+..+.+|+.+++..+.+.. .+..+..+++|+.
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~ 424 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEH 424 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCE
T ss_pred ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccc
Confidence 11 123344555555555443 1233333444455555555544432 2333444555555
Q ss_pred EEeeCCeecCccChhh-hhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccc
Q 036717 324 MDLSHNRLYGSIPACI-TNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYE 402 (580)
Q Consensus 324 L~l~~n~l~~~~p~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (580)
++++++......+... ... ..+..++ ...+...
T Consensus 425 l~l~~~~~~~~~~~~~~~~l-------~~l~~l~---------------------------------------ls~n~l~ 458 (635)
T 4g8a_A 425 LDFQHSNLKQMSEFSVFLSL-------RNLIYLD---------------------------------------ISHTHTR 458 (635)
T ss_dssp EECTTSEEESTTSSCTTTTC-------TTCCEEE---------------------------------------CTTSCCE
T ss_pred hhhhhccccccccccccccc-------ccccccc---------------------------------------ccccccc
Confidence 5555554433222111 000 0111111 1111111
Q ss_pred eecc---cccccccEEEccCCcc-eeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhh
Q 036717 403 SYKG---VILEHMAGLDLSSNEL-TGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 478 (580)
Q Consensus 403 ~~~~---~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 478 (580)
.... ..++.++.|++++|.+ .+..|..|..+++|++|+|++|++++.+|..|+++++|++|+|++|+|++..|..|
T Consensus 459 ~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~ 538 (635)
T 4g8a_A 459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538 (635)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG
T ss_pred cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH
Confidence 1111 2268899999999985 45688999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEeccCCcccccCCCCc-cc-CCcCccccCCCCCCCCC
Q 036717 479 TELHSLSKFDVSYNNLSGPIPDKE-QF-STFDESSYRGNLHLCGP 521 (580)
Q Consensus 479 ~~l~~L~~L~Ls~N~l~~~~p~~~-~~-~~~~~~~~~~n~~lc~~ 521 (580)
..+++|++|||++|++++..|..- .+ ..+...+..+||+.|++
T Consensus 539 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999999999999999999888652 22 45666777888887754
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.9e-40 Score=350.58 Aligned_cols=386 Identities=21% Similarity=0.249 Sum_probs=309.5
Q ss_pred CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717 7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM 84 (580)
Q Consensus 7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 84 (580)
++|++|++++|.++ .++...+.++++|++|+|++|.++++.. ...+++|++|++++|.++ .+|.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence 68999999999999 6666567799999999999999998633 247899999999999999 78876 69999999
Q ss_pred EcccCcCccc-cchhhhcCCCCCEEEcccCcCccccchHHHhCCCCC--cEEEcccccC--CCcCCccccC---------
Q 036717 85 NISKNSFEGN-IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSL--IWLDLSNNNF--DGQIFPNYMN--------- 150 (580)
Q Consensus 85 ~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~--------- 150 (580)
++++|++++. .|..|+++++|++|++++|.+++ .. +..+++| ++|++++|.+ ++..+..+..
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 9999999973 46899999999999999999884 22 3455666 9999999998 6655555443
Q ss_pred -----------------CCCCCEEeccCcc----------------------------cccc----ccccccCCCCCCEE
Q 036717 151 -----------------LTQLQLLYLDNNH----------------------------FSGK----IKDGLLRSTELMVL 181 (580)
Q Consensus 151 -----------------l~~L~~L~l~~n~----------------------------l~~~----~~~~l~~l~~L~~L 181 (580)
+++|+.+++++|. +.+. .+.. ...++|++|
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L 281 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYL 281 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEE
Confidence 4466677776653 1100 0111 123489999
Q ss_pred EcccCCCCCCCchhh-----hcCCCCCEEEcccCcCCCcCc-hhccC---CCCCcEEEccCCcCccccCCccCCCCCcEE
Q 036717 182 DISNNRLSGHIPSWM-----GNFSYLQILSMSKNLLEGNIP-VQFND---LLDLEILNISENNLSGSMISTLNLSSVEHL 252 (580)
Q Consensus 182 ~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 252 (580)
++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+.. ..++++|++++|.+..... ...+++|++|
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L 358 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFL 358 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEE
Confidence 999999998888776 6666777777777776 333 33222 3679999999999865442 1368899999
Q ss_pred EeeCCcCcccCChhccCCCCccEEeCCCCcCcc--cCchhhccCcCcceeecccccccccCc-ccccCCCCCCEEEeeCC
Q 036717 253 YLQNNALGGSIPNTFFRGSALETLDLRDNNFSG--RIPHQINEHSNLRALLLRANYLQGPIP-HQLCRLRKLGIMDLSHN 329 (580)
Q Consensus 253 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 329 (580)
++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|.+++.+| ..+..+++|+.|++++|
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 999999998899999999999999999999996 345678999999999999999998455 45888999999999999
Q ss_pred eecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccc
Q 036717 330 RLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVIL 409 (580)
Q Consensus 330 ~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 409 (580)
++++.+|..+ .
T Consensus 439 ~l~~~~~~~l---------------------------------------------------------------------~ 449 (562)
T 3a79_B 439 MLTGSVFRCL---------------------------------------------------------------------P 449 (562)
T ss_dssp CCCGGGGSSC---------------------------------------------------------------------C
T ss_pred CCCcchhhhh---------------------------------------------------------------------c
Confidence 9986554321 2
Q ss_pred ccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCc
Q 036717 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 475 (580)
Q Consensus 410 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 475 (580)
++|+.|++++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|.+.+..+
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 58899999999999 677777799999999999999995444449999999999999999997655
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=338.55 Aligned_cols=345 Identities=19% Similarity=0.194 Sum_probs=244.5
Q ss_pred CEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEccc
Q 036717 106 RFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISN 185 (580)
Q Consensus 106 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 185 (580)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555554 455432 24556666666666655555666666666666666666655566666666666666666
Q ss_pred CCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCC
Q 036717 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIP 264 (580)
Q Consensus 186 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~ 264 (580)
|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 66665444556666666777776666666666666667777777777777766655544 66777777777777776666
Q ss_pred hhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccCh-hhhhhc
Q 036717 265 NTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA-CITNSL 343 (580)
Q Consensus 265 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~ 343 (580)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.++ .+|. .+..
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~-- 246 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRH-- 246 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTT--
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcC--
Confidence 66777888888888888887777777778888888888887777666666666668888888888886 3332 2221
Q ss_pred ccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcce
Q 036717 344 FWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT 423 (580)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 423 (580)
+++|+.|+|++|.++
T Consensus 247 -----------------------------------------------------------------l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 247 -----------------------------------------------------------------LVYLRFLNLSYNPIS 261 (477)
T ss_dssp -----------------------------------------------------------------CTTCCEEECCSSCCC
T ss_pred -----------------------------------------------------------------ccccCeeECCCCcCC
Confidence 678888999999988
Q ss_pred eeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcc
Q 036717 424 GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQ 503 (580)
Q Consensus 424 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 503 (580)
+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|+++|.|+..+.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~ 341 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV 341 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH
Confidence 88888888899999999999999988888899999999999999999887777888889999999999999888765433
Q ss_pred cCCcCccccCCCCCCCCCC
Q 036717 504 FSTFDESSYRGNLHLCGPP 522 (580)
Q Consensus 504 ~~~~~~~~~~~n~~lc~~~ 522 (580)
+.......+.++...|..|
T Consensus 342 ~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 342 FRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp HTTTTSSCCTTCCCBEEES
T ss_pred HhhhhccccCccCceeCCc
Confidence 3333334455666666443
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.2e-39 Score=331.33 Aligned_cols=375 Identities=25% Similarity=0.338 Sum_probs=244.9
Q ss_pred cCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCC---CCCC-------------ccEEEccCCCCCc
Q 036717 5 HQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTG---AQHG-------------LLSLDISKNSFTG 68 (580)
Q Consensus 5 ~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~-------------L~~L~L~~n~l~~ 68 (580)
+.++|++|++++|.+ |.+|.++ .++++|++|++++|.+++. .+. .+.+ +++|++++|.++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~- 84 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS- 84 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-
T ss_pred ccccchhhhcccCch-hhCChhH-hcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCccc-
Confidence 357899999999999 5999876 5999999999999998864 332 3333 588899999888
Q ss_pred cCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccc
Q 036717 69 ELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNY 148 (580)
Q Consensus 69 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 148 (580)
.+|. ..++|++|++++|.+++ +|.. +++|++|++++|.++ .++. ..++|++|++++|.+++ +| .|
T Consensus 85 ~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~ 149 (454)
T 1jl5_A 85 SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-EL 149 (454)
T ss_dssp CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CC
T ss_pred cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-cc
Confidence 4654 24788999999998886 5643 478889999988887 4443 12688899999888885 55 58
Q ss_pred cCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcE
Q 036717 149 MNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI 228 (580)
Q Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 228 (580)
..+++|++|++++|++++ +|.. ..+|++|++++|.+.+ +| .++.+++|++|++++|.+++ +|.. .++|++
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~ 219 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES 219 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence 888889999998888875 4543 3588888888888885 45 47888888888888888874 3332 257888
Q ss_pred EEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccc
Q 036717 229 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQ 308 (580)
Q Consensus 229 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 308 (580)
|++++|.++..+ ....+++|++|++++|.+++ +|.. .++|+.|++++|++++ +|.. .++|+.|++++|.++
T Consensus 220 L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 220 IVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp EECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred EECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 888888887544 44478888888888888874 4432 3678888888888875 4443 367888888888887
Q ss_pred ccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhc
Q 036717 309 GPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLV 388 (580)
Q Consensus 309 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (580)
+. +.. .++|+.|++++|++++ ++.
T Consensus 291 ~l-~~~---~~~L~~L~l~~N~l~~-i~~--------------------------------------------------- 314 (454)
T 1jl5_A 291 GL-SEL---PPNLYYLNASSNEIRS-LCD--------------------------------------------------- 314 (454)
T ss_dssp EE-SCC---CTTCCEEECCSSCCSE-ECC---------------------------------------------------
T ss_pred cc-cCc---CCcCCEEECcCCcCCc-ccC---------------------------------------------------
Confidence 52 211 2578888888888763 110
Q ss_pred cccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCC
Q 036717 389 KQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468 (580)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 468 (580)
..++|+.|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|
T Consensus 315 -------------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 315 -------------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp -------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred -------------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCC
Confidence 02478888888888885 5554 578888999988888 4565 4678889999999
Q ss_pred cccc--cCchhhcCC-------------CCCCEEeccCCcccc--cCCC
Q 036717 469 KLNG--QIPPQLTEL-------------HSLSKFDVSYNNLSG--PIPD 500 (580)
Q Consensus 469 ~l~~--~~p~~l~~l-------------~~L~~L~Ls~N~l~~--~~p~ 500 (580)
++++ .+|..+..+ ++|++|++++|++++ .+|.
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC------------------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence 8888 678887777 889999999999998 6774
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.2e-38 Score=326.25 Aligned_cols=344 Identities=25% Similarity=0.319 Sum_probs=189.6
Q ss_pred CCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEE
Q 036717 54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWL 133 (580)
Q Consensus 54 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 133 (580)
++++.|+++++.+. .+|. + ..+++|++|++++|.+++..+ +.++++|++|++++|.+. .++. +.++++|++|
T Consensus 46 ~~l~~L~l~~~~i~-~l~~-~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SIDG-V-EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEE
T ss_pred ccccEEecCCCCCc-cCcc-h-hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCEE
Confidence 34444444444444 3332 1 234455555555555443322 445555555555555444 2222 3445555555
Q ss_pred EcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCC
Q 036717 134 DLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE 213 (580)
Q Consensus 134 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 213 (580)
++++|.+++.. .+..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+.. .+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDID--PLKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCCh--HHcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 55555444321 144555555555555554432 1 24445555555553 2232221 1455555555555555554
Q ss_pred CcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhcc
Q 036717 214 GNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE 293 (580)
Q Consensus 214 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 293 (580)
+. ..+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 22 224555555555555555554433 22455566666666665532 245566666777777766664433 566
Q ss_pred CcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhccc
Q 036717 294 HSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNS 373 (580)
Q Consensus 294 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 373 (580)
+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +.
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~--------------------------------- 306 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS--------------------------------- 306 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG---------------------------------
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc---------------------------------
Confidence 6677777777776664433 6666777777777777653221 11
Q ss_pred ccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceeccccc
Q 036717 374 TVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPES 453 (580)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 453 (580)
.+++|+.|++++|++++..| +..+++|++|++++|.+++. ..
T Consensus 307 ----------------------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 307 ----------------------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp ----------------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred ----------------------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 15667777777777775544 66777777777777777754 35
Q ss_pred ccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccc
Q 036717 454 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSG 496 (580)
Q Consensus 454 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 496 (580)
+.++++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 6777777777777777776665 6777777777777777776
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-37 Score=323.27 Aligned_cols=357 Identities=24% Similarity=0.314 Sum_probs=303.2
Q ss_pred CCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccc
Q 036717 17 NKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP 96 (580)
Q Consensus 17 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 96 (580)
..+.+.++. ..+++++.|+++++.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.+++..+
T Consensus 34 ~~~~~~i~~---~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 34 TNVTDTVSQ---TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp SSTTSEECH---HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred cccccccCh---hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh
Confidence 344444443 246789999999999988755568899999999999998 4555 4589999999999999996654
Q ss_pred hhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCC
Q 036717 97 SSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRST 176 (580)
Q Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 176 (580)
++++++|++|++++|.++ .++. +..+++|++|++++|.+.+. ..+..+++|++|+++ +.+.+.. .+..++
T Consensus 108 --~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~ 177 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLT 177 (466)
T ss_dssp --GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCT
T ss_pred --hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCC
Confidence 999999999999999998 5554 68999999999999999863 358899999999997 4555333 388999
Q ss_pred CCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeC
Q 036717 177 ELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQN 256 (580)
Q Consensus 177 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 256 (580)
+|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. ....+++|++|++++
T Consensus 178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN 252 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCC
Confidence 999999999999854 348899999999999999986655 778999999999999998753 333889999999999
Q ss_pred CcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccC
Q 036717 257 NALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP 336 (580)
Q Consensus 257 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 336 (580)
|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..|
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 99986554 8889999999999999986544 8889999999999999997544 7899999999999999986443
Q ss_pred hhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEE
Q 036717 337 ACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLD 416 (580)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 416 (580)
+.. +++|+.|+
T Consensus 327 --~~~-------------------------------------------------------------------l~~L~~L~ 337 (466)
T 1o6v_A 327 --VSS-------------------------------------------------------------------LTKLQRLF 337 (466)
T ss_dssp --GGG-------------------------------------------------------------------CTTCCEEE
T ss_pred --hcc-------------------------------------------------------------------CccCCEeE
Confidence 211 78999999
Q ss_pred ccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCccccc
Q 036717 417 LSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473 (580)
Q Consensus 417 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 473 (580)
+++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 999999965 578999999999999999998877 89999999999999999963
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.3e-38 Score=326.78 Aligned_cols=354 Identities=20% Similarity=0.192 Sum_probs=202.9
Q ss_pred CCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEE
Q 036717 30 NNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLD 109 (580)
Q Consensus 30 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 109 (580)
++++|++|++++|.+++++....+++|++|++++|.+++ +| +..+++|++|++++|.+++. + ++++++|++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 444555555555554443222244455555555555442 32 22455555555555555532 2 45555555555
Q ss_pred cccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCC
Q 036717 110 VSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS 189 (580)
Q Consensus 110 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 189 (580)
+++|.+++ ++ +..+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|++++|.++
T Consensus 113 L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 113 CDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 55555552 33 34555555555555555542 2445555555555555333232 2445555566666665555
Q ss_pred CCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccC
Q 036717 190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFR 269 (580)
Q Consensus 190 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 269 (580)
+ +| ++.+++|+.|++++|.+++. .+..+++|+.|++++|.+++.+ ...+++|++|++++|.+++.. +..
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred e-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 4 23 45555666666666655543 2555566666666666665533 225566666666666665432 334
Q ss_pred CCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCC
Q 036717 270 GSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN 349 (580)
Q Consensus 270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~ 349 (580)
+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.....
T Consensus 253 l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~-------- 308 (457)
T 3bz5_A 253 LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAG-------- 308 (457)
T ss_dssp CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCC--------
T ss_pred CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCc--------
Confidence 455666665554 24455566665555444 345566666666666665555531111
Q ss_pred CCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcc
Q 036717 350 ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSE 429 (580)
Q Consensus 350 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 429 (580)
+..+++ ...++|+.|++++|++++. +
T Consensus 309 --L~~L~l-------------------------------------------------~~~~~L~~L~L~~N~l~~l-~-- 334 (457)
T 3bz5_A 309 --ITELDL-------------------------------------------------SQNPKLVYLYLNNTELTEL-D-- 334 (457)
T ss_dssp --CSCCCC-------------------------------------------------TTCTTCCEEECTTCCCSCC-C--
T ss_pred --ceEech-------------------------------------------------hhcccCCEEECCCCccccc-c--
Confidence 111100 1156888999999999974 3
Q ss_pred cccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCC
Q 036717 430 IGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501 (580)
Q Consensus 430 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 501 (580)
++.+++|+.|++++|++++ ++.|+.|++++|++.|. ..+..|..+++++|+++|.+|..
T Consensus 335 l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 8899999999999999985 24567788999999876 34567888899999999999864
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-38 Score=328.38 Aligned_cols=375 Identities=25% Similarity=0.295 Sum_probs=270.5
Q ss_pred ccccCCCCCEEECCCCCCcccCchHHhhCCCC-------------CcEEEccCCcccCCCCCCCCCCccEEEccCCCCCc
Q 036717 2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTK-------------LEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTG 68 (580)
Q Consensus 2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~ 68 (580)
.|.++++|++|++++|+++|.+|..+. .+++ +++|++++|.++++ +...++|++|++++|.+++
T Consensus 29 ~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l--p~~~~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 29 EAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSL--PELPPHLESLVASCNSLTE 105 (454)
T ss_dssp -----CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCC--CSCCTTCSEEECCSSCCSS
T ss_pred hHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccC--CCCcCCCCEEEccCCcCCc
Confidence 467899999999999999989998654 5665 59999999999985 3356899999999999995
Q ss_pred cCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccc
Q 036717 69 ELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNY 148 (580)
Q Consensus 69 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 148 (580)
+|. .+++|++|++++|++++ +|.. .++|++|++++|.++ .+|. +.++++|++|++++|.+++ +|..
T Consensus 106 -lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-lp~~- 171 (454)
T 1jl5_A 106 -LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-LPDL- 171 (454)
T ss_dssp -CCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-CCCC-
T ss_pred -ccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-cCCC-
Confidence 775 35899999999999985 3321 278999999999999 5884 6899999999999999985 4443
Q ss_pred cCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcE
Q 036717 149 MNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI 228 (580)
Q Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 228 (580)
.++|++|++++|.+++ +| .+..+++|++|++++|.+.+ +|.. .++|++|++++|.++ .+| .+..+++|++
T Consensus 172 --~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~ 241 (454)
T 1jl5_A 172 --PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTT 241 (454)
T ss_dssp --CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCE
T ss_pred --cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCE
Confidence 3599999999999986 55 58999999999999999985 4432 258999999999998 566 4899999999
Q ss_pred EEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccc
Q 036717 229 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQ 308 (580)
Q Consensus 229 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 308 (580)
|++++|.+++.+. .+++|++|++++|.+++ +|.. .++|+.|++++|++++. |.. .++|+.|++++|.++
T Consensus 242 L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 242 IYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIR 310 (454)
T ss_dssp EECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCS
T ss_pred EECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCC
Confidence 9999999987554 34899999999999985 5543 37899999999999862 221 268999999999998
Q ss_pred ccCcccccCC-CCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhh
Q 036717 309 GPIPHQLCRL-RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWL 387 (580)
Q Consensus 309 ~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (580)
+. + .+ ++|+.|++++|++++ +|..
T Consensus 311 ~i-~----~~~~~L~~L~Ls~N~l~~-lp~~------------------------------------------------- 335 (454)
T 1jl5_A 311 SL-C----DLPPSLEELNVSNNKLIE-LPAL------------------------------------------------- 335 (454)
T ss_dssp EE-C----CCCTTCCEEECCSSCCSC-CCCC-------------------------------------------------
T ss_pred cc-c----CCcCcCCEEECCCCcccc-cccc-------------------------------------------------
Confidence 52 2 33 589999999999974 4431
Q ss_pred ccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCccee--cccccccCc--------
Q 036717 388 VKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG--SIPESFSNL-------- 457 (580)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l-------- 457 (580)
+++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|.+++.+
T Consensus 336 ---------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~ 390 (454)
T 1jl5_A 336 ---------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390 (454)
T ss_dssp ---------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----
T ss_pred ---------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccc
Confidence 457788888888888 4555 46788888888888887 677777777
Q ss_pred -----ccCCEEECCCCcccc--cCchhhcCCCCCCEEeccCCcccccCCC
Q 036717 458 -----KMIESLDLSHNKLNG--QIPPQLTELHSLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 458 -----~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 500 (580)
++|+.|++++|++++ .+|. +++.|.+++|.+.+.+|.
T Consensus 391 i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 391 VPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp --------------------------------------------------
T ss_pred cccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence 889999999999997 5553 467778899988887653
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.4e-37 Score=321.30 Aligned_cols=196 Identities=18% Similarity=0.201 Sum_probs=88.8
Q ss_pred EEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcC
Q 036717 36 VLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115 (580)
Q Consensus 36 ~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 115 (580)
.++.+++.++.++ ....++++.|++++|.+++ ++...+..+++|++|++++|.+++..|.+|+++++|++|+|++|.+
T Consensus 15 ~v~c~~~~l~~ip-~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 15 AVLCHRKRFVAVP-EGIPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp EEECCSCCCSSCC-SCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCcCC-CCCCCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 4444444444431 1123344555555555442 2222223445555555555555444444455555555555555544
Q ss_pred ccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchh
Q 036717 116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW 195 (580)
Q Consensus 116 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 195 (580)
+ .++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..
T Consensus 93 ~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 93 K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp C-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred C-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 4 344433444444555555544444444444444444444444444444444444444444444444444444333334
Q ss_pred hhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCC
Q 036717 196 MGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234 (580)
Q Consensus 196 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 234 (580)
+..+++|+.|++++|.+.+..+..|..+++|+.|++++|
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 444444444444444444333334444444444444443
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.5e-37 Score=311.34 Aligned_cols=333 Identities=21% Similarity=0.201 Sum_probs=199.8
Q ss_pred CCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEE
Q 036717 103 QGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLD 182 (580)
Q Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (580)
+++++|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34444444444443 34444444444444444444444443334444445555555555554444444444455555555
Q ss_pred cccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCccc
Q 036717 183 ISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS 262 (580)
Q Consensus 183 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (580)
+++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++... ..+++|++|++++|.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--GGCTTCSEEECCSSCCSE-
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--ccccccceeecccccccc-
Confidence 55555543333334445555555555555554444445555555555555555544321 134555666666655542
Q ss_pred CChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhh
Q 036717 263 IPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNS 342 (580)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 342 (580)
+...++|+.|++++|.++.. |.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..
T Consensus 201 ----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~- 270 (390)
T 3o6n_A 201 ----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK- 270 (390)
T ss_dssp ----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT-
T ss_pred ----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc-
Confidence 12234566677777666533 222 235677777777777643 45667777777777777776555544432
Q ss_pred cccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcc
Q 036717 343 LFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNEL 422 (580)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 422 (580)
+++|+.|++++|++
T Consensus 271 ------------------------------------------------------------------l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 271 ------------------------------------------------------------------MQRLERLYISNNRL 284 (390)
T ss_dssp ------------------------------------------------------------------CSSCCEEECCSSCC
T ss_pred ------------------------------------------------------------------cccCCEEECCCCcC
Confidence 56777888888888
Q ss_pred eeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCc
Q 036717 423 TGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKE 502 (580)
Q Consensus 423 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 502 (580)
++ +|..+..+++|++|++++|+++ .+|..+..+++|++|+|++|+++.. | +..+++|++|++++|+++|.+.. .
T Consensus 285 ~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~ 358 (390)
T 3o6n_A 285 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-A 358 (390)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-H
T ss_pred cc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-H
Confidence 74 4555677889999999999998 5677788899999999999999854 3 67788999999999999986543 4
Q ss_pred ccCCcCccccCCCCCCCCC
Q 036717 503 QFSTFDESSYRGNLHLCGP 521 (580)
Q Consensus 503 ~~~~~~~~~~~~n~~lc~~ 521 (580)
.+..+....+.++...|..
T Consensus 359 ~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 359 LFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp HTTTCCTTTBCCCCSCCCT
T ss_pred HHHHHHhhcccccCceecc
Confidence 4555666666666666653
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-36 Score=324.36 Aligned_cols=334 Identities=21% Similarity=0.203 Sum_probs=215.2
Q ss_pred CCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEE
Q 036717 103 QGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLD 182 (580)
Q Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (580)
++++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 44455555555444 44444444555555555555555544444555555555555555555544444455555555555
Q ss_pred cccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCccc
Q 036717 183 ISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS 262 (580)
Q Consensus 183 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (580)
+++|.+++..+..|+.+++|++|++++|.+.+..|..|..+++|++|++++|.+++.+. ..+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSE-
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCcccc-
Confidence 55555554444444555555555555555555555555555555555555555554422 134566666666666553
Q ss_pred CChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhh
Q 036717 263 IPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNS 342 (580)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 342 (580)
+...++|+.|++++|.++.. +..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~- 276 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK- 276 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT-
T ss_pred ----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC-
Confidence 22334677777777776633 2222 2567777777777765 356777788888888888887666655433
Q ss_pred cccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcc
Q 036717 343 LFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNEL 422 (580)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 422 (580)
+++|+.|+|++|.+
T Consensus 277 ------------------------------------------------------------------l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 277 ------------------------------------------------------------------MQRLERLYISNNRL 290 (597)
T ss_dssp ------------------------------------------------------------------CSSCCEEECTTSCC
T ss_pred ------------------------------------------------------------------ccCCCEEECCCCCC
Confidence 56788888888888
Q ss_pred eeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCc
Q 036717 423 TGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKE 502 (580)
Q Consensus 423 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 502 (580)
++ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++.. +..+++|++|++++|+++|.++. .
T Consensus 291 ~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~ 364 (597)
T 3oja_B 291 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-A 364 (597)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-H
T ss_pred CC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-H
Confidence 85 4666778899999999999999 67778889999999999999998653 66788999999999999987643 4
Q ss_pred ccCCcCccccCCCCCCCCCC
Q 036717 503 QFSTFDESSYRGNLHLCGPP 522 (580)
Q Consensus 503 ~~~~~~~~~~~~n~~lc~~~ 522 (580)
++..+....+.++...|+.+
T Consensus 365 ~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 365 LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HTTTCCTTTBCCCCCCCCTT
T ss_pred HHHHHhhhccccccccCCcc
Confidence 56667777788888888764
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-35 Score=306.73 Aligned_cols=358 Identities=19% Similarity=0.194 Sum_probs=291.8
Q ss_pred cccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717 3 LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLV 82 (580)
Q Consensus 3 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 82 (580)
+.++++|++|++++|.++ .+| . +..+++|++|++++|.+++++ ...+++|++|++++|.+++ ++ +..+++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~ 109 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN-LD---VTPLTKLT 109 (457)
T ss_dssp HHHHTTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-CC---CTTCTTCC
T ss_pred hhHcCCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce-ee---cCCCCcCC
Confidence 456899999999999998 456 3 568999999999999999974 5678999999999999985 54 35799999
Q ss_pred EEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCc
Q 036717 83 YMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNN 162 (580)
Q Consensus 83 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (580)
+|++++|++++. | ++.+++|++|++++|.+++ ++ ++.+++|++|++++|...+.+ .+..+++|++|++++|
T Consensus 110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred EEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 999999999964 4 8899999999999999984 54 578999999999999655444 5788999999999999
Q ss_pred cccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCC
Q 036717 163 HFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIS 242 (580)
Q Consensus 163 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 242 (580)
++++. | +..+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| +..+++|+.|++++|.+++.+..
T Consensus 181 ~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 181 KITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp CCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred cccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH
Confidence 99863 4 78899999999999999865 38889999999999999986 45 88899999999999999987633
Q ss_pred ccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcc--------c
Q 036717 243 TLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH--------Q 314 (580)
Q Consensus 243 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------~ 314 (580)
.+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .
T Consensus 252 --~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 252 --TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp --TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred --HCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 5788999887665 45677888888877776 46788899999999876665553 2
Q ss_pred ccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEE
Q 036717 315 LCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVN 394 (580)
Q Consensus 315 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (580)
+..+++|+.|++++|++++ ++ +.
T Consensus 314 l~~~~~L~~L~L~~N~l~~-l~--l~------------------------------------------------------ 336 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTE-LD--VS------------------------------------------------------ 336 (457)
T ss_dssp CTTCTTCCEEECTTCCCSC-CC--CT------------------------------------------------------
T ss_pred hhhcccCCEEECCCCcccc-cc--cc------------------------------------------------------
Confidence 4566778888888888765 21 11
Q ss_pred EeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccC
Q 036717 395 FMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474 (580)
Q Consensus 395 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 474 (580)
.+++|+.|++++|++++ ++.|..|++++|.+.|. +.+..|+.+++++|+++|.+
T Consensus 337 -------------~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 337 -------------HNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp -------------TCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEEC
T ss_pred -------------cCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEc
Confidence 17889999999999985 35788889999999986 35678999999999999998
Q ss_pred chhhcCCCCCCEEeccCCccc
Q 036717 475 PPQLTELHSLSKFDVSYNNLS 495 (580)
Q Consensus 475 p~~l~~l~~L~~L~Ls~N~l~ 495 (580)
|.. .++..++..+
T Consensus 391 p~~--------~~~~~~~~~~ 403 (457)
T 3bz5_A 391 SPD--------LLDQFGNPMN 403 (457)
T ss_dssp CTT--------CBCTTSCCCE
T ss_pred Chh--------HhcccCceee
Confidence 843 3445555544
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.1e-35 Score=297.33 Aligned_cols=334 Identities=20% Similarity=0.204 Sum_probs=207.7
Q ss_pred CCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEE
Q 036717 78 LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLL 157 (580)
Q Consensus 78 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 157 (580)
++++++|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 344555555555544333333444555555555555544 3333333455555555555555554444445555555555
Q ss_pred eccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCc
Q 036717 158 YLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237 (580)
Q Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 237 (580)
++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.+++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 5555555533333345555555555555555544455555555555666655555532 1344556666666666555
Q ss_pred cccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccC
Q 036717 238 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCR 317 (580)
Q Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 317 (580)
+.. ..++|++|++++|.+... +.. ..++|+.|++++|++++. .++..+++|++|++++|.+++..|..+..
T Consensus 200 ~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 200 TLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp EEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 432 234677777777777643 222 236788888888888753 46788888888888888888877888888
Q ss_pred CCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEee
Q 036717 318 LRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMT 397 (580)
Q Consensus 318 l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (580)
+++|+.|++++|++++ +|..+
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~---------------------------------------------------------- 291 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYG---------------------------------------------------------- 291 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSS----------------------------------------------------------
T ss_pred cccCCEEECCCCcCcc-cCccc----------------------------------------------------------
Confidence 8899999999988863 22211
Q ss_pred ccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchh
Q 036717 398 KNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 477 (580)
Q Consensus 398 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 477 (580)
..+++|+.|++++|+++ .+|..+..+++|++|++++|.++.. + +..+++|+.|++++|++.+.....
T Consensus 292 ---------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~ 358 (390)
T 3o6n_A 292 ---------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA 358 (390)
T ss_dssp ---------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred ---------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHH
Confidence 01678999999999998 5677788999999999999999854 3 678899999999999998653332
Q ss_pred hcCCCCCCEEeccCCcccccC
Q 036717 478 LTELHSLSKFDVSYNNLSGPI 498 (580)
Q Consensus 478 l~~l~~L~~L~Ls~N~l~~~~ 498 (580)
+ +..+....+..+...|..
T Consensus 359 ~--~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 359 L--FRNVARPAVDDADQHCKI 377 (390)
T ss_dssp H--TTTCCTTTBCCCCSCCCT
T ss_pred H--HHHHHhhcccccCceecc
Confidence 2 233444445555555544
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.2e-34 Score=287.97 Aligned_cols=305 Identities=21% Similarity=0.322 Sum_probs=188.9
Q ss_pred cCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717 77 VLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL 156 (580)
Q Consensus 77 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 156 (580)
.+++|++|+++++.++. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. +.+..+++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 35566666666666553 22 3555666666666666555 3333 45555666666666555431 34555555555
Q ss_pred EeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcC
Q 036717 157 LYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL 236 (580)
Q Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 236 (580)
|++++|.+++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~------------------------ 167 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV------------------------ 167 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC------------------------
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc------------------------
Confidence 5555555543222 4455555555555553332222 244444555555555444
Q ss_pred ccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCccccc
Q 036717 237 SGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLC 316 (580)
Q Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 316 (580)
.+... ...+++|++|++++|.+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+ +.
T Consensus 168 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 168 KDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp CCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred CCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 43332 2245555555555555553222 5566677777777777664333 6667777777777777764433 67
Q ss_pred CCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEe
Q 036717 317 RLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFM 396 (580)
Q Consensus 317 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (580)
.+++|+.|++++|.+++ ++ .+.
T Consensus 241 ~l~~L~~L~l~~n~l~~-~~-~~~-------------------------------------------------------- 262 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-IN-AVK-------------------------------------------------------- 262 (347)
T ss_dssp TCTTCCEEECCSSCCCC-CG-GGT--------------------------------------------------------
T ss_pred cCCCCCEEECCCCccCC-Ch-hHh--------------------------------------------------------
Confidence 77788888888887753 11 111
Q ss_pred eccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCch
Q 036717 397 TKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 476 (580)
Q Consensus 397 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 476 (580)
.+++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..++++++|++|++++|++++..|
T Consensus 263 -----------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~- 328 (347)
T 4fmz_A 263 -----------DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328 (347)
T ss_dssp -----------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred -----------cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence 167788888888888754 458888999999999999988888888999999999999999987665
Q ss_pred hhcCCCCCCEEeccCCccc
Q 036717 477 QLTELHSLSKFDVSYNNLS 495 (580)
Q Consensus 477 ~l~~l~~L~~L~Ls~N~l~ 495 (580)
+..+++|++|++++|+++
T Consensus 329 -~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 -LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GGGCTTCSEESSSCC---
T ss_pred -hhhhhccceeehhhhccc
Confidence 788899999999999875
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3e-34 Score=287.00 Aligned_cols=306 Identities=22% Similarity=0.274 Sum_probs=259.7
Q ss_pred ccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcE
Q 036717 4 RHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVY 83 (580)
Q Consensus 4 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 83 (580)
..+++|++|+++++.++ .++. +..+++|++|++++|.+++++....+++|++|++++|.++ .++. +..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred hhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCccc-CchH--HcCCCcCCE
Confidence 46789999999999998 6765 5689999999999999998765668899999999999998 4553 457999999
Q ss_pred EEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcc
Q 036717 84 MNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNH 163 (580)
Q Consensus 84 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (580)
|++++|.+++. +. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 115 L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 115 LYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 99999999864 33 88999999999999966645554 5889999999999999875433 8889999999999999
Q ss_pred ccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCc
Q 036717 164 FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST 243 (580)
Q Consensus 164 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 243 (580)
+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +..
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~ 261 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAV 261 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhH
Confidence 985433 7889999999999999986544 8889999999999999985443 88999999999999999875 333
Q ss_pred cCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCE
Q 036717 244 LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGI 323 (580)
Q Consensus 244 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 323 (580)
..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..| +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 4889999999999999854 468889999999999999998888999999999999999999997666 888999999
Q ss_pred EEeeCCeec
Q 036717 324 MDLSHNRLY 332 (580)
Q Consensus 324 L~l~~n~l~ 332 (580)
|++++|+++
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 999999885
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.8e-35 Score=289.19 Aligned_cols=259 Identities=34% Similarity=0.556 Sum_probs=208.8
Q ss_pred CCCCEEEcccCCCCC--CCchhhhcCCCCCEEEccc-CcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEE
Q 036717 176 TELMVLDISNNRLSG--HIPSWMGNFSYLQILSMSK-NLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHL 252 (580)
Q Consensus 176 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 252 (580)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..|. .+++|++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-----------------------~l~~L~~L 106 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-----------------------KLTQLHYL 106 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-----------------------GCTTCSEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-----------------------cCCCCCEE
Confidence 345555555555555 4555555555555555553 555444444444 45566666
Q ss_pred EeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCC-CCCEEEeeCCee
Q 036717 253 YLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLR-KLGIMDLSHNRL 331 (580)
Q Consensus 253 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l 331 (580)
++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|++
T Consensus 107 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred ECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 6666666667777778888888888888888888888888888888888888888888888888887 899999999999
Q ss_pred cCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccc
Q 036717 332 YGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEH 411 (580)
Q Consensus 332 ~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 411 (580)
++.+|..+.. +.
T Consensus 187 ~~~~~~~~~~-------------------------------------------------------------------l~- 198 (313)
T 1ogq_A 187 TGKIPPTFAN-------------------------------------------------------------------LN- 198 (313)
T ss_dssp EEECCGGGGG-------------------------------------------------------------------CC-
T ss_pred eccCChHHhC-------------------------------------------------------------------Cc-
Confidence 8888776543 33
Q ss_pred ccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccC
Q 036717 412 MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSY 491 (580)
Q Consensus 412 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 491 (580)
|+.|++++|.+++.+|..|..+++|+.|++++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 88899999999999999999999999999999999977766 88899999999999999999999999999999999999
Q ss_pred CcccccCCCCcccCCcCccccCCCCCCCCCCCCCCC
Q 036717 492 NNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC 527 (580)
Q Consensus 492 N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~C 527 (580)
|++++.+|....+..+....+.+|+.+||.|.. .|
T Consensus 278 N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp SEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999888889999999999999998765 56
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1e-36 Score=317.46 Aligned_cols=379 Identities=19% Similarity=0.155 Sum_probs=239.9
Q ss_pred CCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCcc----ccchhhhcCCCCCEEEcccCcCccccchHHHhCCC-
Q 036717 54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEG----NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCF- 128 (580)
Q Consensus 54 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~- 128 (580)
++|++||+++|+++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5678888888888744444445678899999999998874 34667788899999999999887555555656666
Q ss_pred ---CCcEEEcccccCCC----cCCccccCCCCCCEEeccCccccccccccc-----cCCCCCCEEEcccCCCCCCC----
Q 036717 129 ---SLIWLDLSNNNFDG----QIFPNYMNLTQLQLLYLDNNHFSGKIKDGL-----LRSTELMVLDISNNRLSGHI---- 192 (580)
Q Consensus 129 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~---- 192 (580)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68899998888874 346677888888888888888775433332 23567888888888877533
Q ss_pred chhhhcCCCCCEEEcccCcCCCcCchhcc-----CCCCCcEEEccCCcCcccc----CCcc-CCCCCcEEEeeCCcCccc
Q 036717 193 PSWMGNFSYLQILSMSKNLLEGNIPVQFN-----DLLDLEILNISENNLSGSM----ISTL-NLSSVEHLYLQNNALGGS 262 (580)
Q Consensus 193 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----~~~~-~~~~L~~L~l~~n~l~~~ 262 (580)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.. +..+ .+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 45566678888888888877644333332 2457777777777776532 1111 556777777777766543
Q ss_pred C-----ChhccCCCCccEEeCCCCcCccc----CchhhccCcCcceeecccccccccCcccccC-----CCCCCEEEeeC
Q 036717 263 I-----PNTFFRGSALETLDLRDNNFSGR----IPHQINEHSNLRALLLRANYLQGPIPHQLCR-----LRKLGIMDLSH 328 (580)
Q Consensus 263 ~-----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~ 328 (580)
. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 22223456777777777776643 4555556667777777777665443333322 24677777777
Q ss_pred CeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccc
Q 036717 329 NRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI 408 (580)
Q Consensus 329 n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (580)
|.+++.....+.... ..
T Consensus 323 n~l~~~~~~~l~~~l---------------------------------------------------------------~~ 339 (461)
T 1z7x_W 323 CSFTAACCSHFSSVL---------------------------------------------------------------AQ 339 (461)
T ss_dssp SCCBGGGHHHHHHHH---------------------------------------------------------------HH
T ss_pred CCCchHHHHHHHHHH---------------------------------------------------------------hh
Confidence 766543211111100 00
Q ss_pred cccccEEEccCCcceeeCCccccc-----ccCCCeEecccCccee----cccccccCcccCCEEECCCCcccccCchhhc
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGD-----LQNIHGLNLSYNFLSG----SIPESFSNLKMIESLDLSHNKLNGQIPPQLT 479 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 479 (580)
+++|+.|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|+|++|++++.....+.
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~ 419 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHH
Confidence 456677777777766554444432 4567777777777764 5666666667777777777776643222211
Q ss_pred -----CCCCCCEEeccCCccc
Q 036717 480 -----ELHSLSKFDVSYNNLS 495 (580)
Q Consensus 480 -----~l~~L~~L~Ls~N~l~ 495 (580)
....|+.|++.++.+.
T Consensus 420 ~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 420 ESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHTSTTCCCCEEECTTCCCC
T ss_pred HHhccCCcchhheeecccccC
Confidence 1234666666655544
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-33 Score=302.85 Aligned_cols=313 Identities=20% Similarity=0.200 Sum_probs=196.7
Q ss_pred CCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEE
Q 036717 78 LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLL 157 (580)
Q Consensus 78 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 157 (580)
+++++.+++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345555555555555444444455555555555555554 2333233455555555555555555444455555555555
Q ss_pred eccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCc
Q 036717 158 YLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237 (580)
Q Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 237 (580)
++++|.+++..+..|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 55555555443334455555555555555555555555555555666666665555331 334555666666666555
Q ss_pred cccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccC
Q 036717 238 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCR 317 (580)
Q Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 317 (580)
+.. ..++|+.|++++|.+....+. + .++|+.|++++|.+++ +.++..+++|+.|++++|.+++..|..+..
T Consensus 206 ~l~----~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 206 TLA----IPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp EEE----CCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccc----CCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 432 234567777777766533222 1 2577888888888775 356777888888888888888777888888
Q ss_pred CCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEee
Q 036717 318 LRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMT 397 (580)
Q Consensus 318 l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (580)
+++|+.|++++|.+++ +|..+.
T Consensus 277 l~~L~~L~Ls~N~l~~-l~~~~~--------------------------------------------------------- 298 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-LNLYGQ--------------------------------------------------------- 298 (597)
T ss_dssp CSSCCEEECTTSCCCE-EECSSS---------------------------------------------------------
T ss_pred ccCCCEEECCCCCCCC-CCcccc---------------------------------------------------------
Confidence 8888888888888763 222111
Q ss_pred ccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCc
Q 036717 398 KNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 475 (580)
Q Consensus 398 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 475 (580)
.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++. | +..+++|+.|+|++|.+.+...
T Consensus 299 ----------~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 299 ----------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp ----------CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred ----------cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence 1678888999999888 6777788899999999999998854 3 6677889999999999886543
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.3e-34 Score=279.07 Aligned_cols=252 Identities=26% Similarity=0.414 Sum_probs=172.2
Q ss_pred CCCCEEeccCccccc--cccccccCCCCCCEEEccc-CCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcE
Q 036717 152 TQLQLLYLDNNHFSG--KIKDGLLRSTELMVLDISN-NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI 228 (580)
Q Consensus 152 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 228 (580)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..|+.+++|++|++++|.+++.+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999998 8899999999999999995 9999899999999999999999999999888888888888888
Q ss_pred EEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccc
Q 036717 229 LNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYL 307 (580)
Q Consensus 229 L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 307 (580)
|++++|.+++..+..+ .+++|++|++++|.+++.+|..+..++ ++|+.|++++|.+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-----------------------~~L~~L~L~~N~l 186 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-----------------------KLFTSMTISRNRL 186 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-----------------------TTCCEEECCSSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-----------------------hcCcEEECcCCee
Confidence 8887777665443333 445555555555555444444444444 0444444444444
Q ss_pred cccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhh
Q 036717 308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWL 387 (580)
Q Consensus 308 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (580)
++.+|..+..++ |+.|++++|.+++..|..+..
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~---------------------------------------------- 219 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS---------------------------------------------- 219 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT----------------------------------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhc----------------------------------------------
Confidence 444444444444 555555555554443332221
Q ss_pred ccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCC
Q 036717 388 VKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467 (580)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 467 (580)
+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..|..+++|++|+|++
T Consensus 220 ---------------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 220 ---------------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp ---------------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ---------------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 44555555555555544444 55666777777777777766777777777777777777
Q ss_pred CcccccCchhhcCCCCCCEEeccCCcccc
Q 036717 468 NKLNGQIPPQLTELHSLSKFDVSYNNLSG 496 (580)
Q Consensus 468 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 496 (580)
|++++.+|.. ..+++|+.+++++|+.-|
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred CcccccCCCC-ccccccChHHhcCCCCcc
Confidence 7777666665 666777777777776443
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=5.3e-36 Score=311.99 Aligned_cols=392 Identities=16% Similarity=0.138 Sum_probs=255.8
Q ss_pred CCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC------CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717 6 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL------TGAQHGLLSLDISKNSFTGELPQNMGIVLQ 79 (580)
Q Consensus 6 ~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 79 (580)
.++|++|++++|++++.....++..+++|++|++++|.+++... ...+++|++|++++|.+.+..+..++..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 36789999999999855555557789999999999999885311 125688999999999887555555655566
Q ss_pred ----CCcEEEcccCcCcc----ccchhhhcCCCCCEEEcccCcCccccchHHH----hCCCCCcEEEcccccCCCcC---
Q 036717 80 ----KLVYMNISKNSFEG----NIPSSIAKMQGLRFLDVSTNNFAGELSQSLV----TNCFSLIWLDLSNNNFDGQI--- 144 (580)
Q Consensus 80 ----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~--- 144 (580)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ...++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 68999999988874 4577888888899999988887744333332 22446777777777766432
Q ss_pred -CccccCCCCCCEEeccCcccccccccccc-----CCCCCCEEEcccCCCCCC----CchhhhcCCCCCEEEcccCcCCC
Q 036717 145 -FPNYMNLTQLQLLYLDNNHFSGKIKDGLL-----RSTELMVLDISNNRLSGH----IPSWMGNFSYLQILSMSKNLLEG 214 (580)
Q Consensus 145 -~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 214 (580)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 33344556666666666665543332221 234555555555555432 23344444555555555554432
Q ss_pred cCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCccc----CChhccCCCCccEEeCCCCcCcccCch
Q 036717 215 NIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGS----IPNTFFRGSALETLDLRDNNFSGRIPH 289 (580)
Q Consensus 215 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~ 289 (580)
.....+. +... .+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+.
T Consensus 242 ~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 242 VGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 1110000 1111 345666666666666643 455666677888888888887655444
Q ss_pred hhcc-----CcCcceeeccccccccc----CcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCC
Q 036717 290 QINE-----HSNLRALLLRANYLQGP----IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGA 360 (580)
Q Consensus 290 ~~~~-----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 360 (580)
.+.. .++|+.|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.....
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~---------------- 366 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG---------------- 366 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT----------------
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc----------------
Confidence 4432 25888888888888755 4566777889999999999887655544433100
Q ss_pred CCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCccee----eCCcccccccCC
Q 036717 361 DVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTG----NIPSEIGDLQNI 436 (580)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L 436 (580)
...++|+.|++++|.+++ .+|..+..+++|
T Consensus 367 ----------------------------------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 367 ----------------------------------------------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp ----------------------------------------------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred ----------------------------------------------CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 004688999999999986 778888899999
Q ss_pred CeEecccCcceeccccccc-----CcccCCEEECCCCcccccCchhh
Q 036717 437 HGLNLSYNFLSGSIPESFS-----NLKMIESLDLSHNKLNGQIPPQL 478 (580)
Q Consensus 437 ~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~l 478 (580)
++|++++|++++.....+. ...+|+.|++.++......++.+
T Consensus 401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l 447 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 447 (461)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHH
Confidence 9999999999864222222 23468888888887765544443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.3e-32 Score=271.28 Aligned_cols=290 Identities=23% Similarity=0.285 Sum_probs=176.9
Q ss_pred CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEc
Q 036717 104 GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDI 183 (580)
Q Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 183 (580)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777777777776 666543 356777777777777666666777777777777777777666667777777777777
Q ss_pred ccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccC
Q 036717 184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSI 263 (580)
Q Consensus 184 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 263 (580)
++|.+. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.++.. +..
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~ 165 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---------------------GFE 165 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG---------------------GSC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC---------------------CCC
Confidence 777776 3343332 5677777777776655555566666666666666666431 122
Q ss_pred ChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhc
Q 036717 264 PNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSL 343 (580)
Q Consensus 264 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 343 (580)
+..+..+ +|+.|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-- 239 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-- 239 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--
T ss_pred cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--
Confidence 3333333 44555555555442 332222 45555555555555555555555566666666666555433322221
Q ss_pred ccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcce
Q 036717 344 FWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT 423 (580)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 423 (580)
+++|+.|++++|+++
T Consensus 240 -----------------------------------------------------------------l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 240 -----------------------------------------------------------------LPTLRELHLDNNKLS 254 (332)
T ss_dssp -----------------------------------------------------------------CTTCCEEECCSSCCC
T ss_pred -----------------------------------------------------------------CCCCCEEECCCCcCe
Confidence 456666666666666
Q ss_pred eeCCcccccccCCCeEecccCcceecccccccCc------ccCCEEECCCCccc--ccCchhhcCCCCCCEEeccCCc
Q 036717 424 GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNL------KMIESLDLSHNKLN--GQIPPQLTELHSLSKFDVSYNN 493 (580)
Q Consensus 424 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~ 493 (580)
.+|..+..+++|++|++++|.+++..+..|... ..|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 255 -~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 -RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 556666777777777777777776555555543 56777778777776 5666777777778888777764
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.6e-32 Score=272.47 Aligned_cols=298 Identities=18% Similarity=0.182 Sum_probs=243.1
Q ss_pred cCchHHhhCCC-----CCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccc
Q 036717 22 NFPTWLLENNT-----KLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP 96 (580)
Q Consensus 22 ~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 96 (580)
.+|..+...|+ +++.++++++.++.++ ....++|++|++++|.+. .++...+..+++|++|++++|++++..|
T Consensus 18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip-~~~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 95 (332)
T 2ft3_A 18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVP-KEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHE 95 (332)
T ss_dssp -------CCCCSSCEEETTEEECCSSCCSSCC-SCCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred cCCCcccCCCCCCCcccCCEEECCCCCccccC-CCCCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCH
Confidence 55655444443 7999999999988753 234578999999999998 4554444689999999999999998889
Q ss_pred hhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccc--cccccccC
Q 036717 97 SSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSG--KIKDGLLR 174 (580)
Q Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~ 174 (580)
.+|+++++|++|++++|.++ .+|..++ ++|++|++++|.+....+..|..+++|++|++++|.++. ..+..+..
T Consensus 96 ~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171 (332)
T ss_dssp GGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred hHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence 99999999999999999998 7777553 789999999999997777778999999999999999863 56777777
Q ss_pred CCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEE
Q 036717 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLY 253 (580)
Q Consensus 175 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~ 253 (580)
+ +|++|++++|.+++ +|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|+
T Consensus 172 l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp C-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred C-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence 7 99999999999985 554443 789999999999998888889999999999999999998877655 789999999
Q ss_pred eeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhcc------CcCcceeeccccccc--ccCcccccCCCCCCEEE
Q 036717 254 LQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE------HSNLRALLLRANYLQ--GPIPHQLCRLRKLGIMD 325 (580)
Q Consensus 254 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~ 325 (580)
+++|.++ .+|..+..+++|+.|++++|++++..+..+.. .+.|+.|++++|.+. +..|..|..+++|+.++
T Consensus 248 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp CCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred CCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 9999998 77888999999999999999999776666654 367899999999887 66778888899999999
Q ss_pred eeCCe
Q 036717 326 LSHNR 330 (580)
Q Consensus 326 l~~n~ 330 (580)
+++|+
T Consensus 327 l~~n~ 331 (332)
T 2ft3_A 327 FGNYK 331 (332)
T ss_dssp C----
T ss_pred ccccc
Confidence 98875
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=8.3e-32 Score=267.16 Aligned_cols=289 Identities=19% Similarity=0.204 Sum_probs=233.3
Q ss_pred CCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcc
Q 036717 32 TKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVS 111 (580)
Q Consensus 32 ~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 111 (580)
.+++.++++++.++.++ ....+.+++|++++|.++ .++...+..+++|++|++++|.+++..|..|+++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp-~~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVP-KDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCC-CSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccC-ccCCCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 37888999888888653 234578899999999988 5555445678999999999999988778899999999999999
Q ss_pred cCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccc--cccccccCCCCCCEEEcccCCCC
Q 036717 112 TNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSG--KIKDGLLRSTELMVLDISNNRLS 189 (580)
Q Consensus 112 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 189 (580)
+|.++ .+|..++ ++|++|++++|.+++..+..|.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99888 7776543 789999999999987777778889999999999998863 56777888999999999999888
Q ss_pred CCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhcc
Q 036717 190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFF 268 (580)
Q Consensus 190 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~ 268 (580)
. +|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|.++ .+|..+.
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 4 454433 789999999999988778889999999999999999988777555 7889999999999988 6777888
Q ss_pred CCCCccEEeCCCCcCcccCchhhcc------CcCcceeecccccccc--cCcccccCCCCCCEEEeeCCe
Q 036717 269 RGSALETLDLRDNNFSGRIPHQINE------HSNLRALLLRANYLQG--PIPHQLCRLRKLGIMDLSHNR 330 (580)
Q Consensus 269 ~~~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 330 (580)
.+++|++|++++|++++..+..|.. .+.++.+++++|.+.. ..|..|..+..++.+++++|+
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 8899999999999998766666643 3678889999998763 556778888889999998874
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.1e-31 Score=266.14 Aligned_cols=291 Identities=23% Similarity=0.270 Sum_probs=169.3
Q ss_pred CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEc
Q 036717 104 GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDI 183 (580)
Q Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 183 (580)
+++.++++++.++ .+|..+ .+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5777777777776 566533 256777777777777665556777777777777777777666667777777777777
Q ss_pred ccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccC
Q 036717 184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSI 263 (580)
Q Consensus 184 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 263 (580)
++|.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+... +..
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~ 163 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIE 163 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcC
Confidence 777766 3343332 5677777777766655555666666666666666665431 122
Q ss_pred ChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhc
Q 036717 264 PNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSL 343 (580)
Q Consensus 264 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 343 (580)
+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 238 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-- 238 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--
T ss_pred hhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--
Confidence 3334444444444444444442 222221 44555555555555444455555555555555555554332222211
Q ss_pred ccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcce
Q 036717 344 FWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT 423 (580)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 423 (580)
+++|+.|++++|+++
T Consensus 239 -----------------------------------------------------------------l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 239 -----------------------------------------------------------------TPHLRELHLNNNKLV 253 (330)
T ss_dssp -----------------------------------------------------------------STTCCEEECCSSCCS
T ss_pred -----------------------------------------------------------------CCCCCEEECCCCcCc
Confidence 445566666666665
Q ss_pred eeCCcccccccCCCeEecccCcceecccccccC------cccCCEEECCCCcccc--cCchhhcCCCCCCEEeccCCc
Q 036717 424 GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSN------LKMIESLDLSHNKLNG--QIPPQLTELHSLSKFDVSYNN 493 (580)
Q Consensus 424 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~ 493 (580)
.+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+.. ..|..|..+++++.++|++|+
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 55555666666666666666666555555533 2566777777777653 455667777777777777764
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=8.7e-33 Score=297.08 Aligned_cols=380 Identities=15% Similarity=0.057 Sum_probs=203.9
Q ss_pred CCCCccEEEccCCCCCccCChhHhhcCCC-CcEEEcccCc-Ccc-ccchhhhcCCCCCEEEcccCcCcccc---chHHHh
Q 036717 52 AQHGLLSLDISKNSFTGELPQNMGIVLQK-LVYMNISKNS-FEG-NIPSSIAKMQGLRFLDVSTNNFAGEL---SQSLVT 125 (580)
Q Consensus 52 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~ 125 (580)
.+++|++|+|++|.+++..+..+...+++ |++|++++|. ++. .++.....+++|++|++++|.+++.- ...+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 45666667776666654444444332344 6677776664 111 11222335666777777666655331 112335
Q ss_pred CCCCCcEEEcccccCCC----cCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCC---CCCchhhhc
Q 036717 126 NCFSLIWLDLSNNNFDG----QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS---GHIPSWMGN 198 (580)
Q Consensus 126 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~~~~ 198 (580)
.+++|++|++++|.+++ ..+..+..+++|++|++++|.+.+ ++..+..+++|++|+++..... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 56667777776666652 222233456667777776666653 4455666666777766643222 122334555
Q ss_pred CCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCc--cCCCCCcEEEeeCCcCcccCChhccCCCCccEE
Q 036717 199 FSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST--LNLSSVEHLYLQNNALGGSIPNTFFRGSALETL 276 (580)
Q Consensus 199 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 276 (580)
+++|+.|+++++... .++..+..+++|++|++++|.+++..... ..+++|++|+++++...+.++.....+++|++|
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 666677766664332 45555666667777777766655433321 256677777776332222233333456667777
Q ss_pred eCCC-----------CcCccc-CchhhccCcCcceeecccccccccCcccccC-CCCCCEEEee----CCeecCccCh-h
Q 036717 277 DLRD-----------NNFSGR-IPHQINEHSNLRALLLRANYLQGPIPHQLCR-LRKLGIMDLS----HNRLYGSIPA-C 338 (580)
Q Consensus 277 ~l~~-----------n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~p~-~ 338 (580)
++++ +.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++...+ .
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 7772 445433 2222345667777777666666555555544 6677777775 4455432110 0
Q ss_pred hhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEcc
Q 036717 339 ITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLS 418 (580)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 418 (580)
+.... ..+++|+.|+++
T Consensus 428 ~~~~~---------------------------------------------------------------~~~~~L~~L~L~ 444 (592)
T 3ogk_B 428 VRSLL---------------------------------------------------------------IGCKKLRRFAFY 444 (592)
T ss_dssp HHHHH---------------------------------------------------------------HHCTTCCEEEEE
T ss_pred HHHHH---------------------------------------------------------------HhCCCCCEEEEe
Confidence 10000 014566666665
Q ss_pred CCc--ceeeCCcccc-cccCCCeEecccCccee-cccccccCcccCCEEECCCCccccc-CchhhcCCCCCCEEeccCCc
Q 036717 419 SNE--LTGNIPSEIG-DLQNIHGLNLSYNFLSG-SIPESFSNLKMIESLDLSHNKLNGQ-IPPQLTELHSLSKFDVSYNN 493 (580)
Q Consensus 419 ~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~ 493 (580)
+|. +++..+..+. .+++|++|++++|.+++ .++..+.++++|++|+|++|.+++. ++..+..+++|++|++++|+
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 432 4444343333 25666666666666654 2344445666666666666666543 33334556666666666666
Q ss_pred ccc
Q 036717 494 LSG 496 (580)
Q Consensus 494 l~~ 496 (580)
++.
T Consensus 525 it~ 527 (592)
T 3ogk_B 525 ASM 527 (592)
T ss_dssp CCT
T ss_pred CCH
Confidence 553
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.7e-32 Score=293.25 Aligned_cols=421 Identities=15% Similarity=0.116 Sum_probs=309.6
Q ss_pred cccCCCCCEEECCCCCCc---ccCc-----------hHHhhCCCCCcEEEccCCcccCCCCCC---CCCC-ccEEEccCC
Q 036717 3 LRHQFNLKYLDLSHNKLA---GNFP-----------TWLLENNTKLEVLYLINNSFSGFQLTG---AQHG-LLSLDISKN 64 (580)
Q Consensus 3 l~~~~~L~~L~Ls~n~i~---~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~-L~~L~L~~n 64 (580)
+..+++|+.|+++++... +.+| ..++..+++|++|+|++|.+++..... .++. |++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 457899999999875321 1121 233447999999999999877542221 2334 999999998
Q ss_pred C-CCccCChhHhhcCCCCcEEEcccCcCccc----cchhhhcCCCCCEEEcccCcCcc----ccchHHHhCCCCCcEEEc
Q 036717 65 S-FTGELPQNMGIVLQKLVYMNISKNSFEGN----IPSSIAKMQGLRFLDVSTNNFAG----ELSQSLVTNCFSLIWLDL 135 (580)
Q Consensus 65 ~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L 135 (580)
. ++......+...+++|++|++++|.+++. ++.....+++|++|++++|.+++ .++ .++.++++|++|++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKV 227 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEEC
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEec
Confidence 7 22111223334799999999999998766 44566789999999999998862 222 34578999999999
Q ss_pred ccccCCCcCCccccCCCCCCEEeccCcccc---ccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcC
Q 036717 136 SNNNFDGQIFPNYMNLTQLQLLYLDNNHFS---GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLL 212 (580)
Q Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 212 (580)
++|.+.+ .+..+..+++|++|+++..... ...+..+..+++|+.++++++... .+|..+..+++|++|++++|.+
T Consensus 228 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 228 GDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp SSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCC
T ss_pred cCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcC
Confidence 9999875 5677889999999999864322 234456778899999999986444 6788888999999999999997
Q ss_pred CCcCc-hhccCCCCCcEEEccCCcCccccCCcc--CCCCCcEEEeeC-----------CcCcccC-ChhccCCCCccEEe
Q 036717 213 EGNIP-VQFNDLLDLEILNISENNLSGSMISTL--NLSSVEHLYLQN-----------NALGGSI-PNTFFRGSALETLD 277 (580)
Q Consensus 213 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~-----------n~l~~~~-~~~~~~~~~L~~L~ 277 (580)
++... ..+..+++|++|+++ +.+.......+ .+++|++|++++ +.+++.. +.....+++|++|+
T Consensus 306 ~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 306 ETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384 (592)
T ss_dssp CHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred CHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence 64433 446889999999999 44443322222 688999999993 5665432 22345689999999
Q ss_pred CCCCcCcccCchhhcc-CcCcceeecc----ccccccc-----CcccccCCCCCCEEEeeCCe--ecCccChhhhhhccc
Q 036717 278 LRDNNFSGRIPHQINE-HSNLRALLLR----ANYLQGP-----IPHQLCRLRKLGIMDLSHNR--LYGSIPACITNSLFW 345 (580)
Q Consensus 278 l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~~~~~ 345 (580)
++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+..+..
T Consensus 385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~---- 460 (592)
T 3ogk_B 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ---- 460 (592)
T ss_dssp EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH----
T ss_pred eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH----
Confidence 9999999877777765 8999999996 6677753 34446779999999998654 44333322221
Q ss_pred ccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCccee-
Q 036717 346 KVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTG- 424 (580)
Q Consensus 346 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~- 424 (580)
.+++|+.|++++|++++
T Consensus 461 --------------------------------------------------------------~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 461 --------------------------------------------------------------YSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp --------------------------------------------------------------SCTTCCEEEECSCCSSHH
T ss_pred --------------------------------------------------------------hCccceEeeccCCCCCHH
Confidence 16789999999999986
Q ss_pred eCCcccccccCCCeEecccCcceec-ccccccCcccCCEEECCCCcccccCchhh-cCCCCCCEEeccCCc
Q 036717 425 NIPSEIGDLQNIHGLNLSYNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSKFDVSYNN 493 (580)
Q Consensus 425 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~ 493 (580)
.++..+..+++|++|++++|.+++. ++..+..+++|++|+|++|++++.-...+ ..++.+....+..++
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC-
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCcc
Confidence 3455568899999999999998754 44555688999999999999986644333 456777766666553
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.8e-30 Score=254.71 Aligned_cols=232 Identities=22% Similarity=0.239 Sum_probs=171.0
Q ss_pred CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcccc---CCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEe
Q 036717 201 YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM---ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLD 277 (580)
Q Consensus 201 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 277 (580)
++++|++++|.++...+..|..+++|++|++++|.++... .....+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 4444444444444333333444555555555555444321 11224556666666666665 3455566777788888
Q ss_pred CCCCcCcccCc-hhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecC-ccChhhhhhcccccCCCCcccc
Q 036717 278 LRDNNFSGRIP-HQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYG-SIPACITNSLFWKVGNESLYQL 355 (580)
Q Consensus 278 l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~~~~~~~~~~~l 355 (580)
+++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++ ..|..+..
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------- 173 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-------------- 173 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------------
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh--------------
Confidence 88887775444 467778888888888888887777788888888889988888865 34433222
Q ss_pred ccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccC
Q 036717 356 DEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQN 435 (580)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 435 (580)
+++|+.|++++|++++..|..|..+++
T Consensus 174 -----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 174 -----------------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp -----------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred -----------------------------------------------------CcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 678999999999999888999999999
Q ss_pred CCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCC-CCCEEeccCCcccccCCC
Q 036717 436 IHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 436 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~ 500 (580)
|++|++++|.+++..+..+..+++|++|+|++|++++..|..+..++ +|++|++++|+++|.++.
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 99999999999988888899999999999999999999999999985 899999999999998764
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.7e-30 Score=256.97 Aligned_cols=288 Identities=18% Similarity=0.163 Sum_probs=165.6
Q ss_pred CCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEE
Q 036717 102 MQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181 (580)
Q Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (580)
++.....+++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444455666666666 566533 2456666666666665444455666666666666666655555555555555555
Q ss_pred EcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCc-hhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCC-cC
Q 036717 182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIP-VQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNN-AL 259 (580)
Q Consensus 182 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n-~l 259 (580)
++++|.+++..+..|..+++|++|++++|.+++..+ ..|. .+++|++|++++| .+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~-----------------------~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS-----------------------HLTKLQILRVGNMDTF 162 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCT-----------------------TCTTCCEEEEEESSSC
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhc-----------------------cCCCCcEEECCCCccc
Confidence 555555554333345555555555555555542222 2333 4445555555555 24
Q ss_pred cccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhh
Q 036717 260 GGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACI 339 (580)
Q Consensus 260 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 339 (580)
.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 43444556666666666666666666556666666666666666666653333333446667777777776653222111
Q ss_pred hhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccC
Q 036717 340 TNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSS 419 (580)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 419 (580)
..
T Consensus 243 ~~------------------------------------------------------------------------------ 244 (353)
T 2z80_A 243 ST------------------------------------------------------------------------------ 244 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred CcceeeCCcccccccCCCeEecccCccee----cccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCccc
Q 036717 420 NELTGNIPSEIGDLQNIHGLNLSYNFLSG----SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495 (580)
Q Consensus 420 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 495 (580)
....+.++.++++++.+++ .+|..+.++++|++|+|++|+++...+..|..+++|++|++++|+++
T Consensus 245 ----------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 245 ----------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 0112233444444444433 46777888888999999999988444444688899999999999999
Q ss_pred ccCCCCccc
Q 036717 496 GPIPDKEQF 504 (580)
Q Consensus 496 ~~~p~~~~~ 504 (580)
|.+|...++
T Consensus 315 ~~~~~l~~l 323 (353)
T 2z80_A 315 CSCPRIDYL 323 (353)
T ss_dssp CCHHHHHHH
T ss_pred CcCCCcHHH
Confidence 888754333
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=9.6e-30 Score=254.72 Aligned_cols=284 Identities=21% Similarity=0.201 Sum_probs=167.9
Q ss_pred CCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEE
Q 036717 30 NNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLD 109 (580)
Q Consensus 30 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 109 (580)
.|+.....+++++.++.++ ....++|++|++++|.++ .++...+..+++|++|++++|++++..|..|+++++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP-~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIP-SGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCC-TTCCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccc-ccccccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 3455555666666666542 123346666666666666 34443334566666666666666655556666666666666
Q ss_pred cccCcCccccchHHHhCCCCCcEEEcccccCCCcCC-ccccCCCCCCEEeccCc-cccccccccccCCCCCCEEEcccCC
Q 036717 110 VSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIF-PNYMNLTQLQLLYLDNN-HFSGKIKDGLLRSTELMVLDISNNR 187 (580)
Q Consensus 110 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~ 187 (580)
+++|.++ .++...+.++++|++|++++|+++.... ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.
T Consensus 107 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 6666666 4555555666666666666666654333 34556666666666666 3444444555566666666666666
Q ss_pred CCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhc
Q 036717 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTF 267 (580)
Q Consensus 188 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 267 (580)
+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++.....+. ..
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~ 245 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--------------------TG 245 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--------------------cc
Confidence 6555555555566666666666655432222233355555555555555443322110 01
Q ss_pred cCCCCccEEeCCCCcCcc----cCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccC
Q 036717 268 FRGSALETLDLRDNNFSG----RIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP 336 (580)
Q Consensus 268 ~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 336 (580)
.....++.++++++.+++ .+|.++..+++|+.|++++|.++...+..|..+++|+.|++++|++.+..|
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 123456666666666654 356777888888888888888884433445788889999999999887665
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=254.23 Aligned_cols=231 Identities=25% Similarity=0.272 Sum_probs=164.5
Q ss_pred CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCC
Q 036717 201 YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 279 (580)
Q Consensus 201 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 279 (580)
+++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44444444444444444444445555555555555444443333 44555555555555554444456666666666666
Q ss_pred CCcCcccCchhhccCcCcceeecccc-cccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccC
Q 036717 280 DNNFSGRIPHQINEHSNLRALLLRAN-YLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEE 358 (580)
Q Consensus 280 ~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~ 358 (580)
+|+++...+..+..+++|+.|++++| .+....+..|..+++|+.|++++|.++ .+|. +.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~------------------ 204 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LT------------------ 204 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CT------------------
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cC------------------
Confidence 66666555556666667777777663 344334446777788888888888775 3331 10
Q ss_pred CCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCe
Q 036717 359 GADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHG 438 (580)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 438 (580)
.+++|+.|+|++|.+++..|..|.++++|+.
T Consensus 205 -------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 205 -------------------------------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp -------------------------------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred -------------------------------------------------CCcccCEEECCCCccCccChhhhccCccCCE
Confidence 1678999999999999999999999999999
Q ss_pred EecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717 439 LNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 439 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 500 (580)
|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++.|.|..
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999999999999999999999999999988888899999999999999999998864
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.5e-29 Score=244.75 Aligned_cols=228 Identities=23% Similarity=0.291 Sum_probs=103.3
Q ss_pred CCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccc--cchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc
Q 036717 54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGN--IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI 131 (580)
Q Consensus 54 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 131 (580)
++|++|++++|.++ .+|..++..+++|++|++++|.++.. .+..+..+++|++|++++|.+. .++.. +..+++|+
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~-~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEE-EETCTTCC
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhh-cCCCCCCC
Confidence 34444555544444 44444434455555555555554421 1344444555555555555544 33333 23445555
Q ss_pred EEEcccccCCCcCC-ccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCC-CCchhhhcCCCCCEEEccc
Q 036717 132 WLDLSNNNFDGQIF-PNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSG-HIPSWMGNFSYLQILSMSK 209 (580)
Q Consensus 132 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~ 209 (580)
+|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 55555554443322 234444455555555544444444444444444444444444443 2334444444444444444
Q ss_pred CcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCC-CccEEeCCCCcCc
Q 036717 210 NLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGS-ALETLDLRDNNFS 284 (580)
Q Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~ 284 (580)
|.+++..+..|..+++|++|++++|.+++.++..+ .+++|++|++++|.+++..+..+..++ +|+.|++++|.++
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 44444444444444444444444444444333222 334444444444444444444444432 4444444444443
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.6e-28 Score=254.36 Aligned_cols=231 Identities=21% Similarity=0.205 Sum_probs=167.4
Q ss_pred CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCC
Q 036717 201 YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 279 (580)
Q Consensus 201 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 279 (580)
+++.|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 45555555555554444555555555555555555555444433 45555566666666554445556666666777777
Q ss_pred CCcCcccCchhhccCcCcceeecccc-cccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccC
Q 036717 280 DNNFSGRIPHQINEHSNLRALLLRAN-YLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEE 358 (580)
Q Consensus 280 ~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~ 358 (580)
+|+++...+..+..+++|+.|++++| .+....+..|..+++|+.|++++|.+++ +|. +
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~------------------- 214 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-L------------------- 214 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-C-------------------
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-c-------------------
Confidence 77666555556666777777777763 4443344467778888888888888763 221 1
Q ss_pred CCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCe
Q 036717 359 GADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHG 438 (580)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 438 (580)
..+++|+.|+|++|.+++..|..|.++++|+.
T Consensus 215 ------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 215 ------------------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp ------------------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred ------------------------------------------------cccccccEEECcCCcCcccCcccccCccCCCE
Confidence 01678999999999999999999999999999
Q ss_pred EecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717 439 LNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 439 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 500 (580)
|+|++|.+++..|..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|++.|.|..
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999999999999999999999999999999988888899999999999999999998864
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=2.9e-31 Score=285.36 Aligned_cols=312 Identities=13% Similarity=0.135 Sum_probs=170.4
Q ss_pred EEECCCCCCcccCchHHhhCCCCCcEEEccCCc-ccCCCC----------------CCCCCCccEEEccCCCCCccCChh
Q 036717 11 YLDLSHNKLAGNFPTWLLENNTKLEVLYLINNS-FSGFQL----------------TGAQHGLLSLDISKNSFTGELPQN 73 (580)
Q Consensus 11 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~----------------~~~~~~L~~L~L~~n~l~~~~~~~ 73 (580)
.+++++... ..|..++..+++|++|+++++. +.+... ...+++|++|++++|.+++..+..
T Consensus 47 ~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 47 KVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp EEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred EEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 444444322 3455556667777777777654 111110 014567777777777766555555
Q ss_pred HhhcCCCCcEEEcccC-cCccc-cchhhhcCCCCCEEEcccCcCccccchH---HHhCCCCCcEEEccccc--CCCc-CC
Q 036717 74 MGIVLQKLVYMNISKN-SFEGN-IPSSIAKMQGLRFLDVSTNNFAGELSQS---LVTNCFSLIWLDLSNNN--FDGQ-IF 145 (580)
Q Consensus 74 ~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~--l~~~-~~ 145 (580)
+...+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+.. +...+++|++|++++|. +... ..
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 5445677777777776 44422 3334446777777777777665332221 12355677777777765 2211 11
Q ss_pred ccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCC-------CCCCchhhhcCCCCCEE-EcccCcCCCcCc
Q 036717 146 PNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRL-------SGHIPSWMGNFSYLQIL-SMSKNLLEGNIP 217 (580)
Q Consensus 146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~ 217 (580)
..+..+++|++|++++|...+.++..+..+++|++|+++.+.. . .++..+.++++|+.| .+.+... ..++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~ 282 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLP 282 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHH
Confidence 1123457777777777622223555566677777777554432 1 123356667777777 3332221 1334
Q ss_pred hhccCCCCCcEEEccCCcCccccCCcc--CCCCCcEEEeeCCcCccc-CChhccCCCCccEEeCC---------CCcCcc
Q 036717 218 VQFNDLLDLEILNISENNLSGSMISTL--NLSSVEHLYLQNNALGGS-IPNTFFRGSALETLDLR---------DNNFSG 285 (580)
Q Consensus 218 ~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~---------~n~l~~ 285 (580)
..+..+++|++|++++|.+++...... .+++|++|++++| +.+. ++.....+++|++|+++ .+.+++
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 444456677777777776554332211 5677777777766 3322 22222346677777662 334443
Q ss_pred cCchhh-ccCcCcceeecccccccccCccccc-CCCCCCEEEee
Q 036717 286 RIPHQI-NEHSNLRALLLRANYLQGPIPHQLC-RLRKLGIMDLS 327 (580)
Q Consensus 286 ~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~ 327 (580)
.....+ ..+++|+.|.+..|.+++.....+. .+++|+.|+++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 332233 2367777777776777655444443 46777777777
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1e-28 Score=239.50 Aligned_cols=229 Identities=21% Similarity=0.219 Sum_probs=168.3
Q ss_pred CEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCC
Q 036717 203 QILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDN 281 (580)
Q Consensus 203 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 281 (580)
++++.+++.++ .+|..+ .+++++|++++|.+++.++..+ .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34455555444 233222 2455566666666555554433 5566666666666666555666777777777777777
Q ss_pred c-CcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCC
Q 036717 282 N-FSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGA 360 (580)
Q Consensus 282 ~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 360 (580)
. ++...|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 151 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------- 151 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence 6 66555667777777888888888777766777777888888888888876433332221
Q ss_pred CCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEe
Q 036717 361 DVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLN 440 (580)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 440 (580)
+++|+.|++++|++++..+..|..+++|++|+
T Consensus 152 ------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 152 ------------------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ------------------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 67788888888888877777888999999999
Q ss_pred cccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCC
Q 036717 441 LSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501 (580)
Q Consensus 441 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 501 (580)
+++|.+++..|..|.++++|++|++++|++++..+..+..+++|++|++++|+++|.++..
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 9999999888999999999999999999999877788999999999999999999888754
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.1e-28 Score=234.01 Aligned_cols=207 Identities=23% Similarity=0.269 Sum_probs=124.1
Q ss_pred CCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCC-CCCCCchhhhcCCCCCEEE
Q 036717 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR-LSGHIPSWMGNFSYLQILS 206 (580)
Q Consensus 128 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 206 (580)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 344444444444444433444455555555555555554444455555555555555554 4433344555555555555
Q ss_pred cccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcc
Q 036717 207 MSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285 (580)
Q Consensus 207 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 285 (580)
+++|.+.+..+..|..+++|++|++++|.+++.++..+ .+++|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 55555554445555555555555555555555544433 55666666666666665555556667777777777777776
Q ss_pred cCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCc
Q 036717 286 RIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS 334 (580)
Q Consensus 286 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 334 (580)
..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 6677777777777777777777766666677777888888888877643
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.4e-28 Score=238.66 Aligned_cols=235 Identities=19% Similarity=0.234 Sum_probs=172.4
Q ss_pred CCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEe
Q 036717 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYL 254 (580)
Q Consensus 175 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 254 (580)
.++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++..+.....+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 356666666666666 45555666666666666666666 5555555555555555555555533222224455555555
Q ss_pred eCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCc
Q 036717 255 QNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS 334 (580)
Q Consensus 255 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 334 (580)
++|.+.+.+|..+.. . ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 554444444433221 0 01122445889999999999998 778889999999999999999974
Q ss_pred cChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccE
Q 036717 335 IPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAG 414 (580)
Q Consensus 335 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 414 (580)
+|..+.. +++|+.
T Consensus 221 l~~~l~~-------------------------------------------------------------------l~~L~~ 233 (328)
T 4fcg_A 221 LGPAIHH-------------------------------------------------------------------LPKLEE 233 (328)
T ss_dssp CCGGGGG-------------------------------------------------------------------CTTCCE
T ss_pred Cchhhcc-------------------------------------------------------------------CCCCCE
Confidence 5544332 678999
Q ss_pred EEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcc
Q 036717 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNL 494 (580)
Q Consensus 415 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 494 (580)
|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|++|+|++|++.+.+|+.+..+++|+.+++..|.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997765
Q ss_pred c
Q 036717 495 S 495 (580)
Q Consensus 495 ~ 495 (580)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 4
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.7e-29 Score=248.62 Aligned_cols=266 Identities=20% Similarity=0.238 Sum_probs=212.0
Q ss_pred CCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccC
Q 036717 154 LQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE 233 (580)
Q Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (580)
++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455666666654444555666788888888888887777788888888888888888875544 78888888888888
Q ss_pred CcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcc
Q 036717 234 NNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH 313 (580)
Q Consensus 234 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 313 (580)
|.+++.+. .++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CccccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 88876553 378899999999888655433 57899999999999987777888899999999999999887777
Q ss_pred ccc-CCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccE
Q 036717 314 QLC-RLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVE 392 (580)
Q Consensus 314 ~~~-~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (580)
.+. .+++|+.|++++|.+++. |..
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~~------------------------------------------------------ 187 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KGQ------------------------------------------------------ 187 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-ECC------------------------------------------------------
T ss_pred HHhhccCcCCEEECCCCcCccc-ccc------------------------------------------------------
Confidence 664 789999999999998632 110
Q ss_pred EEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCccc-
Q 036717 393 VNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN- 471 (580)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~- 471 (580)
..+++|+.|++++|++++. |..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 188 --------------~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 188 --------------VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp --------------CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred --------------cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 0167899999999999955 445999999999999999999 57888999999999999999998
Q ss_pred ccCchhhcCCCCCCEEeccC-CcccccCC
Q 036717 472 GQIPPQLTELHSLSKFDVSY-NNLSGPIP 499 (580)
Q Consensus 472 ~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p 499 (580)
+.+|..+..++.|+.+++++ +.++|..|
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cCHHHHHhccccceEEECCCchhccCCch
Confidence 77888999999999999994 45665544
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=4.5e-30 Score=276.13 Aligned_cols=423 Identities=15% Similarity=0.098 Sum_probs=274.3
Q ss_pred cccCCCCCEEECCCCCCcccC---c-----------hHHhhCCCCCcEEEccCCcccCCCCC---CCCCCccEEEccCC-
Q 036717 3 LRHQFNLKYLDLSHNKLAGNF---P-----------TWLLENNTKLEVLYLINNSFSGFQLT---GAQHGLLSLDISKN- 64 (580)
Q Consensus 3 l~~~~~L~~L~Ls~n~i~~~~---~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~L~~L~L~~n- 64 (580)
+..+++|+.|+++++.....+ | ..+...+++|++|+|++|.+++.... ..+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 456788888888887522111 1 23345788888999988877654221 15788889998888
Q ss_pred CCCccCChhHhhcCCCCcEEEcccCcCccccchhhh----cCCCCCEEEcccCc--CccccchHHHhCCCCCcEEEcccc
Q 036717 65 SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIA----KMQGLRFLDVSTNN--FAGELSQSLVTNCFSLIWLDLSNN 138 (580)
Q Consensus 65 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~n 138 (580)
.+++.....+...+++|++|++++|.+++..+..+. .+++|++|++++|. +.......+...+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 454332334445788899999988887765555444 56688899888886 332222333456788899998887
Q ss_pred cCCCcCCccccCCCCCCEEeccCc-------cccccccccccCCCCCCEE-EcccCCCCCCCchhhhcCCCCCEEEcccC
Q 036717 139 NFDGQIFPNYMNLTQLQLLYLDNN-------HFSGKIKDGLLRSTELMVL-DISNNRLSGHIPSWMGNFSYLQILSMSKN 210 (580)
Q Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 210 (580)
...+.++..+..+++|++|+++.+ .+.+ ++..+.++++|+.+ .+..... +.++..+..+++|++|++++|
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCC
Confidence 322235566677888888886544 2332 33467788888888 3443322 244555567788889998888
Q ss_pred cCCCcC-chhccCCCCCcEEEccCCcCccccCCcc--CCCCCcEEEeeC---------CcCcccCChhcc-CCCCccEEe
Q 036717 211 LLEGNI-PVQFNDLLDLEILNISENNLSGSMISTL--NLSSVEHLYLQN---------NALGGSIPNTFF-RGSALETLD 277 (580)
Q Consensus 211 ~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~---------n~l~~~~~~~~~-~~~~L~~L~ 277 (580)
.+++.. ...+..+++|++|++++| +.......+ .+++|++|++.+ +.+++.....+. .+++|+.|+
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 866432 233567888889988887 432222211 478888888844 344433333333 378888888
Q ss_pred CCCCcCcccCchhhc-cCcCcceeecc--c----cccccc-----CcccccCCCCCCEEEeeCCeecCccChhhhhhccc
Q 036717 278 LRDNNFSGRIPHQIN-EHSNLRALLLR--A----NYLQGP-----IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFW 345 (580)
Q Consensus 278 l~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~ 345 (580)
++.|.+++..+..+. .+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+..+..
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---- 453 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT---- 453 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH----
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH----
Confidence 888888766555554 57888888888 3 455521 122356778888888866 454332222211
Q ss_pred ccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceee
Q 036717 346 KVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGN 425 (580)
Q Consensus 346 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 425 (580)
.+++|+.|++++|.+++.
T Consensus 454 --------------------------------------------------------------~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 454 --------------------------------------------------------------YAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp --------------------------------------------------------------HCTTCCEEEEESCCSSHH
T ss_pred --------------------------------------------------------------hchhccEeeccCCCCcHH
Confidence 156788888988888765
Q ss_pred CCccc-ccccCCCeEecccCcceecccc-cccCcccCCEEECCCCcccccCchhh-cCCCCCCEEeccCCccc
Q 036717 426 IPSEI-GDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSKFDVSYNNLS 495 (580)
Q Consensus 426 ~~~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~ 495 (580)
.+..+ ..+++|++|++++|.+++..+. ....+++|++|++++|+++......+ ..++.|+...+..+.-.
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 55555 6688899999999888654443 44568889999999888865444444 55677776666655443
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=242.93 Aligned_cols=249 Identities=19% Similarity=0.186 Sum_probs=178.6
Q ss_pred CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717 55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD 134 (580)
Q Consensus 55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 134 (580)
..+.++.++..++ .+|..+ .++++.|++++|++++..+..|.++++|++|+|++|.++ .++...+.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 4567888888887 788765 367888888888888777788888888888888888887 56655567788888888
Q ss_pred cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCC-CCCCCchhhhcCCCCCEEEcccCcCC
Q 036717 135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR-LSGHIPSWMGNFSYLQILSMSKNLLE 213 (580)
Q Consensus 135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 213 (580)
+++|.++...+..|..+++|++|++++|.++...+..+..+++|++|++++|. +....+..|..+++|++|++++|.++
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 88888876666667777888888888777776656666777777777777643 33222334555556666666655554
Q ss_pred CcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhcc
Q 036717 214 GNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE 293 (580)
Q Consensus 214 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 293 (580)
..+ ....+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..
T Consensus 199 ------------------------~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 199 ------------------------EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp ------------------------SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred ------------------------ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 221 1224556666666666666666667777777777777777777777777777
Q ss_pred CcCcceeecccccccccCcccccCCCCCCEEEeeCCeecC
Q 036717 294 HSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYG 333 (580)
Q Consensus 294 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 333 (580)
+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 7788888888888877666777778888888888888764
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.3e-27 Score=234.13 Aligned_cols=222 Identities=17% Similarity=0.237 Sum_probs=105.9
Q ss_pred CCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEe
Q 036717 79 QKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLY 158 (580)
Q Consensus 79 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 158 (580)
++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..+ ..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 34444444444444 33444444444444444444444 344332 34444444444444444 3344444444444444
Q ss_pred ccCccccccccccc---------cCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEE
Q 036717 159 LDNNHFSGKIKDGL---------LRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEIL 229 (580)
Q Consensus 159 l~~n~l~~~~~~~l---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 229 (580)
+++|.+.+.+|..+ ..+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 44444433333333 23555555555555555 445555555555555555555552 33345555555555
Q ss_pred EccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccc
Q 036717 230 NISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANY 306 (580)
Q Consensus 230 ~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 306 (580)
++++|.+.+..+..+ .+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.++..+++|+.+++..+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 555554444433332 44444455554444444455455555555555555555555555555555555555554443
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.9e-27 Score=243.82 Aligned_cols=251 Identities=22% Similarity=0.237 Sum_probs=171.1
Q ss_pred CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717 55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD 134 (580)
Q Consensus 55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 134 (580)
..+.++.++..++ .+|..+ .+++++|++++|.+++..+..|.++++|++|+|++|.++ .++...+.++++|++|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence 3466777777776 666644 356777777777777666777777777777777777776 44444456666677777
Q ss_pred cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCC
Q 036717 135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214 (580)
Q Consensus 135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 214 (580)
|++|.++...+..|..+++|++|++++|.++...+..+..+++|++|++++|.. +..
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~-----------------------l~~ 186 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK-----------------------LEY 186 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT-----------------------CCE
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC-----------------------ccc
Confidence 776666655555566666666666666666654444555556666666655322 221
Q ss_pred cCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccC
Q 036717 215 NIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH 294 (580)
Q Consensus 215 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 294 (580)
..+..|..+++|++|++++|.+++.+ ....+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..+..+
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 22233444555555555555554432 23356777778888888877777888888888888888888888888888888
Q ss_pred cCcceeecccccccccCcccccCCCCCCEEEeeCCeecCc
Q 036717 295 SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS 334 (580)
Q Consensus 295 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 334 (580)
++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 8889999988888877777788888999999999988643
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5.7e-29 Score=244.91 Aligned_cols=254 Identities=18% Similarity=0.181 Sum_probs=124.6
Q ss_pred EEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccc
Q 036717 59 LDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNN 138 (580)
Q Consensus 59 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 138 (580)
.+++.+.+. ..+..++..+++|++|++++|++++..|..|+.+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 15 ~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 15 EKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN 90 (317)
T ss_dssp ESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSS
T ss_pred eeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCC
Confidence 334444433 2333333344455555555555555444555555555555555555543222 345555555555555
Q ss_pred cCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCch
Q 036717 139 NFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPV 218 (580)
Q Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 218 (580)
.+++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 544211 2245555555555555433222 34455555555555544444555555555555555555544444
Q ss_pred hcc-CCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCc
Q 036717 219 QFN-DLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNL 297 (580)
Q Consensus 219 ~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 297 (580)
.+. .+++|++|++++|.+++.+... .+++|++|++++|.+++ +|..+..+++|+.|++++|+++ .+|..+..+++|
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred HHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 332 4455555555555555442221 34555555555555553 2223445555555555555555 334445555555
Q ss_pred ceeeccccccc-ccCcccccCCCCCCEEEee
Q 036717 298 RALLLRANYLQ-GPIPHQLCRLRKLGIMDLS 327 (580)
Q Consensus 298 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 327 (580)
+.|++++|.++ +.++..+..+++|+.++++
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 55555555554 4444444555555555544
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.2e-28 Score=252.42 Aligned_cols=236 Identities=22% Similarity=0.265 Sum_probs=177.1
Q ss_pred CCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEe
Q 036717 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYL 254 (580)
Q Consensus 175 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 254 (580)
+++|+.|++++|.+.+..|..|+.+++|++|++++|.+++..+ +..+++|++|++++|.+++.++ .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3467777777777776666677777777777777777765444 6777777777777777776553 267888888
Q ss_pred eCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCccccc-CCCCCCEEEeeCCeecC
Q 036717 255 QNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLC-RLRKLGIMDLSHNRLYG 333 (580)
Q Consensus 255 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~ 333 (580)
++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88888765443 346788888888888877777788888888888888888877777775 67888888888888764
Q ss_pred ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccccc
Q 036717 334 SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA 413 (580)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 413 (580)
..+. ..+++|+
T Consensus 184 ~~~~---------------------------------------------------------------------~~l~~L~ 194 (487)
T 3oja_A 184 VKGQ---------------------------------------------------------------------VVFAKLK 194 (487)
T ss_dssp EECC---------------------------------------------------------------------CCCTTCC
T ss_pred cccc---------------------------------------------------------------------ccCCCCC
Confidence 3110 0157788
Q ss_pred EEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCccc-ccCchhhcCCCCCCEEecc
Q 036717 414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN-GQIPPQLTELHSLSKFDVS 490 (580)
Q Consensus 414 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls 490 (580)
.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 195 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 195 TLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 88888888886544 48888888888888888885 6777888888888888888887 6677778888888888776
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=3.3e-26 Score=242.80 Aligned_cols=267 Identities=23% Similarity=0.295 Sum_probs=134.0
Q ss_pred CCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717 8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS 87 (580)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 87 (580)
+++.|++++|.++ .+|..+. ++|++|+|++|.++.+ +..+++|++|++++|+++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~l--p~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL--PALPPELRTLEVSGNQLT-SLPV----LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCC--CCCCTTCCEEEECSCCCS-CCCC----CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCC--CCcCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECc
Confidence 4556666666665 5554332 5566666666665543 224555566666665555 4444 34555555555
Q ss_pred cCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccc
Q 036717 88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK 167 (580)
Q Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (580)
+|.+++ +|. .+++|++|++++|.++ .+|. .+++|++|++++|.+++ ++. .+++|+.|++++|.+++
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 555553 222 3455555555555555 3443 13455555555555543 121 22445555555555542
Q ss_pred ccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCC
Q 036717 168 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247 (580)
Q Consensus 168 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 247 (580)
+| ..+++|+.|++++|.+++ +|. ..++|+.|++++|.++..+. .++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~---------------------------~~~~L~~L~L~~N~l~~l~~---~~~ 221 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPT---------------------------LPSELYKLWAYNNRLTSLPA---LPS 221 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC---------------------------CCTTCCEEECCSSCCSSCCC---CCT
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCC---------------------------ccchhhEEECcCCcccccCC---CCC
Confidence 22 223445555555554442 221 12344455555554443322 124
Q ss_pred CCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEee
Q 036717 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS 327 (580)
Q Consensus 248 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 327 (580)
+|++|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 55555555555553 33 23345556666666555 3333 3455666666666665 445555666666666666
Q ss_pred CCeecCccChhhhhh
Q 036717 328 HNRLYGSIPACITNS 342 (580)
Q Consensus 328 ~n~l~~~~p~~~~~~ 342 (580)
+|++++..|..+...
T Consensus 293 ~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 293 GNPLSERTLQALREI 307 (622)
T ss_dssp SCCCCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHhc
Confidence 666665555555443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.7e-28 Score=239.51 Aligned_cols=245 Identities=21% Similarity=0.222 Sum_probs=134.4
Q ss_pred CCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCc-cccchhhh-------cCCCCCEEEcccCcCccccchHHH
Q 036717 53 QHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFE-GNIPSSIA-------KMQGLRFLDVSTNNFAGELSQSLV 124 (580)
Q Consensus 53 ~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~ 124 (580)
.++|+.|++++|.+ .+|..+... |++|++++|.++ ..+|..+. ++++|++|++++|.+++.+|..++
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34566666777766 566655432 666666666663 34454444 566666666666666655555432
Q ss_pred -hCCCCCcEEEcccccCCCcCCccccCC-----CCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCC--Cchhh
Q 036717 125 -TNCFSLIWLDLSNNNFDGQIFPNYMNL-----TQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGH--IPSWM 196 (580)
Q Consensus 125 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~ 196 (580)
..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..+..+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5566666666666666654 4444444 6666666666666655555666666666666666665432 12222
Q ss_pred --hcCCCCCEEEcccCcCCC---cCchhccCCCCCcEEEccCCcCccccC-Ccc-CCCCCcEEEeeCCcCcccCChhccC
Q 036717 197 --GNFSYLQILSMSKNLLEG---NIPVQFNDLLDLEILNISENNLSGSMI-STL-NLSSVEHLYLQNNALGGSIPNTFFR 269 (580)
Q Consensus 197 --~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~l~~n~l~~~~~~~~~~ 269 (580)
..+++|++|++++|.+++ .....+..+++|++|++++|.+++..+ ..+ .+++|++|++++|.++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 555666666666666552 111233455556666666665555442 111 3455555555555555 3444333
Q ss_pred CCCccEEeCCCCcCcccCchhhccCcCcceeeccccccc
Q 036717 270 GSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQ 308 (580)
Q Consensus 270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 308 (580)
++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 4555555555555533 33 445555555555555544
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5.7e-28 Score=237.17 Aligned_cols=248 Identities=19% Similarity=0.174 Sum_probs=200.4
Q ss_pred hCCCCCcEEEccCCcccCCCCCC-CCCCccEEEccCCCCC-ccCChhHh------hcCCCCcEEEcccCcCccccchhh-
Q 036717 29 ENNTKLEVLYLINNSFSGFQLTG-AQHGLLSLDISKNSFT-GELPQNMG------IVLQKLVYMNISKNSFEGNIPSSI- 99 (580)
Q Consensus 29 ~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~- 99 (580)
...++|++|++++|.+ . ++. ....|+.|++++|.+. +.+|...+ ..+++|++|++++|++++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~--~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-A--DLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-C--CCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-c--cHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3456678888888887 3 232 2233888888888873 45665543 158999999999999998888876
Q ss_pred -hcCCCCCEEEcccCcCccccchHHHhCC-----CCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccc--cccc
Q 036717 100 -AKMQGLRFLDVSTNNFAGELSQSLVTNC-----FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK--IKDG 171 (580)
Q Consensus 100 -~~l~~L~~L~L~~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~ 171 (580)
+.+++|++|++++|.+++. |.. +..+ ++|++|++++|.+.+..+..|..+++|++|++++|++.+. .+..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 8999999999999999854 644 3555 8999999999999988888999999999999999998754 2334
Q ss_pred c--cCCCCCCEEEcccCCCCCC---CchhhhcCCCCCEEEcccCcCCCcCc-hhccCCCCCcEEEccCCcCccccCCccC
Q 036717 172 L--LRSTELMVLDISNNRLSGH---IPSWMGNFSYLQILSMSKNLLEGNIP-VQFNDLLDLEILNISENNLSGSMISTLN 245 (580)
Q Consensus 172 l--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 245 (580)
+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+++..| ..+..+++|++|++++|.++..+....
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~- 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP- 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence 4 7899999999999999832 22445678999999999999997664 556778999999999999996555443
Q ss_pred CCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcc
Q 036717 246 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285 (580)
Q Consensus 246 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 285 (580)
++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999966 65 8899999999999999875
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2e-25 Score=236.85 Aligned_cols=260 Identities=24% Similarity=0.303 Sum_probs=189.3
Q ss_pred CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717 55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD 134 (580)
Q Consensus 55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 134 (580)
+++.|++++|.++ .+|..++ ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 4566666666666 5665442 56777777777666 3443 4567777777777766 5554 556777777
Q ss_pred cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCC
Q 036717 135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214 (580)
Q Consensus 135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 214 (580)
+++|.+++. +. .+++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 777777643 22 45677788888877774 4432 4778888888888874 343 34678889999998884
Q ss_pred cCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccC
Q 036717 215 NIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH 294 (580)
Q Consensus 215 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 294 (580)
+| ..+++|+.|++++|.+++.+. .+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +| ..+
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred -Cc---ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCC
Confidence 44 456889999999999987554 3579999999999998 45532 4789999999999985 55 456
Q ss_pred cCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCcc
Q 036717 295 SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVD 366 (580)
Q Consensus 295 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 366 (580)
++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|..+... ..+..+++.++.+....
T Consensus 241 ~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l-------~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 241 SELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHL-------SSETTVNLEGNPLSERT 300 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGS-------CTTCEEECCSCCCCHHH
T ss_pred CcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhc-------cccCEEEecCCCCCCcC
Confidence 899999999999984 555 5789999999999998 788877764 35677777777766543
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.5e-26 Score=221.55 Aligned_cols=215 Identities=22% Similarity=0.251 Sum_probs=162.4
Q ss_pred CCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecc
Q 036717 225 DLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLR 303 (580)
Q Consensus 225 ~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 303 (580)
++++|++++|.+++.++..+ .+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45566666666555554333 55666666666666665555567777777777777777776666777777788888888
Q ss_pred cccccccCcccccCCCCCCEEEeeCCeecC-ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccc
Q 036717 304 ANYLQGPIPHQLCRLRKLGIMDLSHNRLYG-SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDES 382 (580)
Q Consensus 304 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (580)
+|.+++..+..+..+++|+.|++++|.+++ .+|..+..
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------------------------- 147 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------------------------- 147 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence 887776666667788888888888888864 24554433
Q ss_pred hhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCC----eEecccCcceecccccccCcc
Q 036717 383 DLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIH----GLNLSYNFLSGSIPESFSNLK 458 (580)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~ 458 (580)
+++|+.|++++|++++..+..+..+++|+ .|++++|.+++..+..+.. .
T Consensus 148 --------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~ 200 (276)
T 2z62_A 148 --------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-I 200 (276)
T ss_dssp --------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-C
T ss_pred --------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-C
Confidence 67888889999988887778888888877 8999999999776666654 4
Q ss_pred cCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCc
Q 036717 459 MIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTF 507 (580)
Q Consensus 459 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 507 (580)
+|++|+|++|++++..+..+..+++|++|++++|+++|.||...++..|
T Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred cccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence 8999999999999887778899999999999999999999876554443
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.6e-25 Score=213.46 Aligned_cols=211 Identities=22% Similarity=0.231 Sum_probs=170.8
Q ss_pred CCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccc
Q 036717 225 DLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRA 304 (580)
Q Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 304 (580)
..+.++++++.++..+... .+++++|++++|.+++..+..|..+++|++|++++|+++...+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3566777777766544332 25678888888888766666788888888888888888865556667888888888888
Q ss_pred ccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchh
Q 036717 305 NYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDL 384 (580)
Q Consensus 305 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (580)
|.+++..+..+..+++|+.|++++|.+++..|..+..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------- 131 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------- 131 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence 8888777777888889999999999887544433322
Q ss_pred hhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEE
Q 036717 385 RWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLD 464 (580)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 464 (580)
+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 132 ------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 132 ------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp ------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 67899999999999977777799999999999999999988888899999999999
Q ss_pred CCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCccc
Q 036717 465 LSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQF 504 (580)
Q Consensus 465 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 504 (580)
|++|++++..+..+..+++|+.|++++|++.|.|+...++
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~ 227 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYM 227 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHH
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHH
Confidence 9999999887788999999999999999999998754333
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.6e-25 Score=213.42 Aligned_cols=223 Identities=18% Similarity=0.211 Sum_probs=164.4
Q ss_pred EEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEccc
Q 036717 58 SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSN 137 (580)
Q Consensus 58 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 137 (580)
.++.++..+. .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence 3455555555 566544 356888888888888766667888888888888888887 55555567788888888888
Q ss_pred ccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCC-CchhhhcCCCCCEEEcccCcCCCcC
Q 036717 138 NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGNI 216 (580)
Q Consensus 138 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 216 (580)
|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 888777777788888888888888888876666778888888888888888763 5778888888888888888888766
Q ss_pred chhccCCCCCc----EEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcc
Q 036717 217 PVQFNDLLDLE----ILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285 (580)
Q Consensus 217 ~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 285 (580)
+..+..+++++ .+++++|.+++.++..+...+|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 66666666555 7777777777766666655567777777777765555556666777777777776654
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-26 Score=239.95 Aligned_cols=235 Identities=21% Similarity=0.208 Sum_probs=137.7
Q ss_pred CCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEE
Q 036717 54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWL 133 (580)
Q Consensus 54 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 133 (580)
++|++|+|++|.+++ ++...+..+++|++|++++|.+++..| ++.+++|++|++++|.++ .++. .++|++|
T Consensus 34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEE
T ss_pred CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEE
Confidence 466666666666663 333333456666666666666665444 666666666666666665 3332 2566666
Q ss_pred EcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhh-cCCCCCEEEcccCcC
Q 036717 134 DLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG-NFSYLQILSMSKNLL 212 (580)
Q Consensus 134 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l 212 (580)
++++|.+++..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 6666666644332 245666666666666665555666666666666666666655555554 466666666666666
Q ss_pred CCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCc-ccCchhh
Q 036717 213 EGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS-GRIPHQI 291 (580)
Q Consensus 213 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~ 291 (580)
++.. .+..+++|+.|++++|.+++.++....+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|.++
T Consensus 182 ~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 182 YDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 5432 1234566666666666666655554455666666666666653 4555555566666666666665 4455555
Q ss_pred ccCcCcceeecc
Q 036717 292 NEHSNLRALLLR 303 (580)
Q Consensus 292 ~~~~~L~~L~l~ 303 (580)
..++.|+.+++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 555555555554
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.9e-24 Score=207.89 Aligned_cols=207 Identities=22% Similarity=0.175 Sum_probs=170.0
Q ss_pred ccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcce
Q 036717 220 FNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRA 299 (580)
Q Consensus 220 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 299 (580)
+..++++++++++++.++..+... .+.++.|++++|.+++..+..+..+++|+.|++++|.+++..+ . ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCE
Confidence 456667777777777777655443 2678888888888887777788888888888888888875433 2 67888999
Q ss_pred eecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhccccccccc
Q 036717 300 LLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRL 379 (580)
Q Consensus 300 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 379 (580)
|++++|.++ .+|..+..+++|+.|++++|++++..|..+..
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------- 122 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence 999999888 66777888899999999999987544443322
Q ss_pred ccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCccc
Q 036717 380 DESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKM 459 (580)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 459 (580)
+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++
T Consensus 123 -----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 123 -----------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173 (290)
T ss_dssp -----------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred -----------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence 678999999999999888888999999999999999999777778899999
Q ss_pred CCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCC
Q 036717 460 IESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP 499 (580)
Q Consensus 460 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 499 (580)
|+.|+|++|+++ .+|..+..+++|+.++|++|++.|.|.
T Consensus 174 L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 999999999999 678888888999999999999999873
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.3e-23 Score=201.68 Aligned_cols=180 Identities=20% Similarity=0.256 Sum_probs=113.3
Q ss_pred CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717 55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD 134 (580)
Q Consensus 55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 134 (580)
+.+.++++++.++ .+|..+ .+++++|++++|++++..+..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 4566777777766 566544 256777777777777665567777777777777777776 56666566677777777
Q ss_pred cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCC
Q 036717 135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214 (580)
Q Consensus 135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 214 (580)
+++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 77777765555556666667777666666665555555666666666666666665444445556666666666665554
Q ss_pred cCchhccCCCCCcEEEccCCcCccc
Q 036717 215 NIPVQFNDLLDLEILNISENNLSGS 239 (580)
Q Consensus 215 ~~~~~~~~l~~L~~L~l~~n~l~~~ 239 (580)
..+..|..+++|++|++++|.+++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred eChhHhccCCCcCEEECCCCcCCcC
Confidence 4444455555555555555444433
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.4e-24 Score=205.89 Aligned_cols=221 Identities=16% Similarity=0.186 Sum_probs=165.8
Q ss_pred CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccC
Q 036717 10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKN 89 (580)
Q Consensus 10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 89 (580)
..+++.++.+.+... ...+++|+.|++++|.++.......+++|++|++++|.+.+ ++ .+ ..+++|++|++++|
T Consensus 22 ~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l-~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 22 IKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS-AL-KELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG-GG-TTCTTCCEEECTTS
T ss_pred HHHHhcCcccccccc---cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch-hh-cCCCCCCEEECCCC
Confidence 344556666653332 23677888888888887776545577888888888888774 43 33 46788888888888
Q ss_pred cCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccccc
Q 036717 90 SFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIK 169 (580)
Q Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (580)
.+++..+..++.+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 888777777788888888888888887 5565556778888888888888887666667788888888888888887766
Q ss_pred ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc
Q 036717 170 DGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244 (580)
Q Consensus 170 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 244 (580)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .+++++.+++..|.+++..+..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTT
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcc
Confidence 667788888888888888887777777888888888888887653 35567888888888887766544
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=7.5e-24 Score=203.43 Aligned_cols=206 Identities=19% Similarity=0.235 Sum_probs=104.0
Q ss_pred hcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCC
Q 036717 100 AKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELM 179 (580)
Q Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (580)
..+++|+.|++++|.+. .++. +..+++|++|++++|.+++ .+.+..+++|++|++++|.+++..+..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34445555555555444 2322 2344555555555554443 12444555555555555555544444445555555
Q ss_pred EEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCc
Q 036717 180 VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNA 258 (580)
Q Consensus 180 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~ 258 (580)
+|++++|.+.+..+..|+.+++|++|++++|.+++..+..|..+++|++|++++|.+++.++..+ .+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 55555555554444445555555555555555554444444555555555555555554444333 44555555555555
Q ss_pred CcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccC
Q 036717 259 LGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCR 317 (580)
Q Consensus 259 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 317 (580)
+++..+..+..+++|+.|++++|.+.+. +++|+.+++..|.++|.+|..++.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 5544444455555566666666554422 334555555555555555554443
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=6.1e-23 Score=198.60 Aligned_cols=199 Identities=21% Similarity=0.200 Sum_probs=119.0
Q ss_pred CCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcE
Q 036717 53 QHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIW 132 (580)
Q Consensus 53 ~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 132 (580)
++++++++++++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.++ .++.. ..+++|++
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGT 81 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCE
T ss_pred cCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCE
Confidence 445666666666665 555544 256777777777777666667777777777777777776 34432 45666777
Q ss_pred EEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcC
Q 036717 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLL 212 (580)
Q Consensus 133 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 212 (580)
|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 777766665 3455556666666666666666655555566666666666666666655555555566666666666666
Q ss_pred CCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcC
Q 036717 213 EGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNAL 259 (580)
Q Consensus 213 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l 259 (580)
+...+..|..+++|+.|++++|.++..+...+..++|+.+++++|.+
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 54444445555555555555555554444333444444444444443
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=7.3e-25 Score=219.78 Aligned_cols=177 Identities=22% Similarity=0.195 Sum_probs=100.9
Q ss_pred EEeccCccccccccccccCCCCCCEEEcccCCCCCCCc----hhhhcCC-CCCEEEcccCcCCCcCchhccCC-----CC
Q 036717 156 LLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIP----SWMGNFS-YLQILSMSKNLLEGNIPVQFNDL-----LD 225 (580)
Q Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 225 (580)
.+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35666777776666666555667777777777765555 5566666 67777777777766555555543 66
Q ss_pred CcEEEccCCcCccccCCcc-----CC-CCCcEEEeeCCcCcccCChhcc----C-CCCccEEeCCCCcCcccCc----hh
Q 036717 226 LEILNISENNLSGSMISTL-----NL-SSVEHLYLQNNALGGSIPNTFF----R-GSALETLDLRDNNFSGRIP----HQ 290 (580)
Q Consensus 226 L~~L~l~~n~l~~~~~~~~-----~~-~~L~~L~l~~n~l~~~~~~~~~----~-~~~L~~L~l~~n~l~~~~~----~~ 290 (580)
|++|++++|.+++..+..+ .+ ++|++|++++|.+++..+..+. . +++|++|++++|++++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 6677777666665443322 22 5666666666666544443322 2 2466666666666654322 22
Q ss_pred hccCc-CcceeecccccccccCcccc----cCC-CCCCEEEeeCCeec
Q 036717 291 INEHS-NLRALLLRANYLQGPIPHQL----CRL-RKLGIMDLSHNRLY 332 (580)
Q Consensus 291 ~~~~~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~ 332 (580)
+..++ +|++|++++|.+++..+..+ ..+ ++|+.|++++|.++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 23333 56666666665554444322 223 35555555555554
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=9.3e-24 Score=200.30 Aligned_cols=212 Identities=21% Similarity=0.237 Sum_probs=155.0
Q ss_pred CCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEee
Q 036717 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS 327 (580)
Q Consensus 248 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 327 (580)
..++++++++.++ .+|..+. +.++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456666666665 4444333 467777777777776666677777777777777777777777777778888888888
Q ss_pred CCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccc
Q 036717 328 HNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV 407 (580)
Q Consensus 328 ~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (580)
+|.+++..+..+..
T Consensus 92 ~n~l~~~~~~~~~~------------------------------------------------------------------ 105 (251)
T 3m19_A 92 NNQLASLPLGVFDH------------------------------------------------------------------ 105 (251)
T ss_dssp TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCcccccChhHhcc------------------------------------------------------------------
Confidence 88876433333221
Q ss_pred ccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEE
Q 036717 408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF 487 (580)
Q Consensus 408 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 487 (580)
+++|+.|+|++|++++..+..|..+++|++|+|++|.+++..+..|+.+++|++|+|++|++++..+..+..+++|++|
T Consensus 106 -l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 106 -LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 6788889999999887777778999999999999999998777789999999999999999998888899999999999
Q ss_pred eccCCcccccCCCCcccCCcCc------cccCCCCCCCCCCCCCCCCCC
Q 036717 488 DVSYNNLSGPIPDKEQFSTFDE------SSYRGNLHLCGPPINKSCTNL 530 (580)
Q Consensus 488 ~Ls~N~l~~~~p~~~~~~~~~~------~~~~~n~~lc~~~~~~~C~~~ 530 (580)
++++|+++|.+....++..|-. ....|+. +|+.|....|..+
T Consensus 185 ~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 185 TLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp ECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred EeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 9999999998544433322211 1122333 6777777788764
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=2.9e-24 Score=215.46 Aligned_cols=262 Identities=16% Similarity=0.176 Sum_probs=149.3
Q ss_pred EEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccc----hhhhcCC-CCCEEEcccCcCccccchHHHhCC-----
Q 036717 58 SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP----SSIAKMQ-GLRFLDVSTNNFAGELSQSLVTNC----- 127 (580)
Q Consensus 58 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l----- 127 (580)
++++++|.++|.+|... ...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+ ..+
T Consensus 2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSC
T ss_pred ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccC
Confidence 45677777776665544 344558888888888776655 6677777 78888888887774444333 332
Q ss_pred CCCcEEEcccccCCCcCCccc----cCC-CCCCEEeccCccccccccccc----cC-CCCCCEEEcccCCCCCCCc----
Q 036717 128 FSLIWLDLSNNNFDGQIFPNY----MNL-TQLQLLYLDNNHFSGKIKDGL----LR-STELMVLDISNNRLSGHIP---- 193 (580)
Q Consensus 128 ~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~---- 193 (580)
++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++...
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 677777777777665444432 233 566666666666654443332 22 2456666666665553222
Q ss_pred hhhhcCC-CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCC-CCCcEEEeeCCcCccc----CChhc
Q 036717 194 SWMGNFS-YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNL-SSVEHLYLQNNALGGS----IPNTF 267 (580)
Q Consensus 194 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~~ 267 (580)
..+..++ +|++|++++|.+++..+..+... ...+ ++|++|++++|.+++. ++..+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKF-------------------LASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-------------------HHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHH-------------------HHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 2223333 55555555555544333222211 0012 3455555555555432 23334
Q ss_pred cC-CCCccEEeCCCCcCcccCc----hhhccCcCcceeecccccccccC-------cccccCCCCCCEEEeeCCeecCcc
Q 036717 268 FR-GSALETLDLRDNNFSGRIP----HQINEHSNLRALLLRANYLQGPI-------PHQLCRLRKLGIMDLSHNRLYGSI 335 (580)
Q Consensus 268 ~~-~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~ 335 (580)
.. .++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.||+++|++.+..
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 33 3467777777777765443 23355677777777777744322 335667788888888888887665
Q ss_pred Chhhh
Q 036717 336 PACIT 340 (580)
Q Consensus 336 p~~~~ 340 (580)
+..+.
T Consensus 301 ~~~~~ 305 (362)
T 3goz_A 301 SIPIS 305 (362)
T ss_dssp CHHHH
T ss_pred hHHHH
Confidence 55443
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=8.1e-25 Score=221.70 Aligned_cols=193 Identities=19% Similarity=0.263 Sum_probs=128.0
Q ss_pred CCCCCcEEEeeCCcCcc----cCChhccCCCCccEEeCCCCcCcccCchhhc----cC---------cCcceeecccccc
Q 036717 245 NLSSVEHLYLQNNALGG----SIPNTFFRGSALETLDLRDNNFSGRIPHQIN----EH---------SNLRALLLRANYL 307 (580)
Q Consensus 245 ~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~---------~~L~~L~l~~n~l 307 (580)
.+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 44566666666666654 3555666677777777777777644333332 23 6777777777777
Q ss_pred c-ccCc---ccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccch
Q 036717 308 Q-GPIP---HQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESD 383 (580)
Q Consensus 308 ~-~~~~---~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (580)
+ +.++ ..+..+++|+.|++++|.++..-...+....
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~---------------------------------------- 211 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG---------------------------------------- 211 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT----------------------------------------
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH----------------------------------------
Confidence 6 3333 3566777888888888877521100000000
Q ss_pred hhhhccccEEEEeeccccceecccccccccEEEccCCcce----eeCCcccccccCCCeEecccCcceec----cccccc
Q 036717 384 LRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT----GNIPSEIGDLQNIHGLNLSYNFLSGS----IPESFS 455 (580)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~ 455 (580)
+ ..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. +|..+.
T Consensus 212 --------------------l--~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 212 --------------------L--AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp --------------------G--GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred --------------------h--hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 0 01567888888888885 56777788888888888888888765 556663
Q ss_pred --CcccCCEEECCCCcccc----cCchhh-cCCCCCCEEeccCCcccccCC
Q 036717 456 --NLKMIESLDLSHNKLNG----QIPPQL-TELHSLSKFDVSYNNLSGPIP 499 (580)
Q Consensus 456 --~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~p 499 (580)
.+++|++|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 37888888888888887 477766 667888888888888886553
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=8e-24 Score=210.29 Aligned_cols=249 Identities=17% Similarity=0.253 Sum_probs=181.4
Q ss_pred CCEEEcccCCCCCCCchhhhcC--CCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccc-cCCcc-CCCCCcEEE
Q 036717 178 LMVLDISNNRLSGHIPSWMGNF--SYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGS-MISTL-NLSSVEHLY 253 (580)
Q Consensus 178 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-~~~~L~~L~ 253 (580)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+ .+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566666666554 4455555 6777777777777655444 44677778888877776653 22222 677888888
Q ss_pred eeCCcCcccCChhccCCCCccEEeCCCC-cCccc-CchhhccCcCcceeecccc-ccccc-CcccccCCC-CCCEEEeeC
Q 036717 254 LQNNALGGSIPNTFFRGSALETLDLRDN-NFSGR-IPHQINEHSNLRALLLRAN-YLQGP-IPHQLCRLR-KLGIMDLSH 328 (580)
Q Consensus 254 l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~ 328 (580)
+++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888887777778888889999999998 67753 6666788899999999999 88754 566778888 999999999
Q ss_pred Ce--ec-CccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceec
Q 036717 329 NR--LY-GSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYK 405 (580)
Q Consensus 329 n~--l~-~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (580)
|. ++ +.+|..+..
T Consensus 205 ~~~~~~~~~l~~~~~~---------------------------------------------------------------- 220 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRR---------------------------------------------------------------- 220 (336)
T ss_dssp CGGGSCHHHHHHHHHH----------------------------------------------------------------
T ss_pred CcccCCHHHHHHHHhh----------------------------------------------------------------
Confidence 84 43 222322221
Q ss_pred ccccccccEEEccCCc-ceeeCCcccccccCCCeEecccCc-ceecccccccCcccCCEEECCCCcccccCchhhcCC-C
Q 036717 406 GVILEHMAGLDLSSNE-LTGNIPSEIGDLQNIHGLNLSYNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-H 482 (580)
Q Consensus 406 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~ 482 (580)
+++|+.|++++|. +++..+..+..+++|++|++++|. ++......++++++|+.|++++| ++.. .+..+ .
T Consensus 221 ---~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~ 293 (336)
T 2ast_B 221 ---CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKE 293 (336)
T ss_dssp ---CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHH
T ss_pred ---CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHh
Confidence 6789999999999 777788889999999999999995 33222236888999999999999 4432 33333 3
Q ss_pred CCCEEeccCCcccccCCCC
Q 036717 483 SLSKFDVSYNNLSGPIPDK 501 (580)
Q Consensus 483 ~L~~L~Ls~N~l~~~~p~~ 501 (580)
++..|++++|++++..|..
T Consensus 294 ~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 294 ALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp HSTTSEESCCCSCCTTCSS
T ss_pred hCcceEEecccCccccCCc
Confidence 4777779999999887753
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=3.4e-24 Score=217.15 Aligned_cols=246 Identities=19% Similarity=0.244 Sum_probs=138.8
Q ss_pred CChhHhhcCCCCcEEEcccCcCccccchh----hhcCCCCCEEEcccC---cCccccchHH------HhCCCCCcEEEcc
Q 036717 70 LPQNMGIVLQKLVYMNISKNSFEGNIPSS----IAKMQGLRFLDVSTN---NFAGELSQSL------VTNCFSLIWLDLS 136 (580)
Q Consensus 70 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n---~l~~~~~~~~------~~~l~~L~~L~L~ 136 (580)
++..+ ..+++|++|++++|.++...+.. +..+++|++|+|++| ++++.+|..+ +..+++|++|+++
T Consensus 24 l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHH-hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 44444 35677777777777776553333 556777777777775 3333444433 2445555555555
Q ss_pred cccCCC----cCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcC---------CCCC
Q 036717 137 NNNFDG----QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNF---------SYLQ 203 (580)
Q Consensus 137 ~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---------~~L~ 203 (580)
+|.+.+ .++..+..+++|++|++++|.+++..+..+. ..+..+ ++|+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--------------------RALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--------------------HHHHHHHHHHHHHTCCCCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH--------------------HHHHHHhhhhhcccCCCCc
Confidence 555554 2333444455555555555554422222111 111112 4555
Q ss_pred EEEcccCcCCC-cCc---hhccCCCCCcEEEccCCcCcc-----ccC-CccCCCCCcEEEeeCCcCc----ccCChhccC
Q 036717 204 ILSMSKNLLEG-NIP---VQFNDLLDLEILNISENNLSG-----SMI-STLNLSSVEHLYLQNNALG----GSIPNTFFR 269 (580)
Q Consensus 204 ~L~l~~n~l~~-~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~-~~~~~~~L~~L~l~~n~l~----~~~~~~~~~ 269 (580)
+|++++|.+.. ..+ ..+..+++|++|++++|.+.. ..+ ....+++|++|++++|.++ ..+|..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 55555555441 222 234445555555555555542 112 2225566666666666664 345666777
Q ss_pred CCCccEEeCCCCcCccc----Cchhhcc--CcCcceeecccccccc----cCcccc-cCCCCCCEEEeeCCeecCccC
Q 036717 270 GSALETLDLRDNNFSGR----IPHQINE--HSNLRALLLRANYLQG----PIPHQL-CRLRKLGIMDLSHNRLYGSIP 336 (580)
Q Consensus 270 ~~~L~~L~l~~n~l~~~----~~~~~~~--~~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~p 336 (580)
+++|+.|++++|.+++. ++..+.. +++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++..+
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 77788888888777654 4455533 7778888888887776 366665 557888888888888876553
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.5e-23 Score=206.74 Aligned_cols=222 Identities=18% Similarity=0.172 Sum_probs=127.2
Q ss_pred CCCEEECCCCCCcccCchHHhhCC--CCCcEEEccCCcccCCCCC-CCCCCccEEEccCCCCCcc-CChhHhhcCCCCcE
Q 036717 8 NLKYLDLSHNKLAGNFPTWLLENN--TKLEVLYLINNSFSGFQLT-GAQHGLLSLDISKNSFTGE-LPQNMGIVLQKLVY 83 (580)
Q Consensus 8 ~L~~L~Ls~n~i~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~ 83 (580)
.++.++++++.+.+ ..+..+ ++++.|++++|.+++.... ..+++|++|++++|.+++. ++.. +..+++|++
T Consensus 48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSE
T ss_pred hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCE
Confidence 46777777776652 223345 6777777777777664222 2556777777777766543 3333 345677777
Q ss_pred EEcccCcCccccchhhhcCCCCCEEEcccC-cCccccchHHHhCCCCCcEEEcccc-cCCCc-CCccccCCC-CCCEEec
Q 036717 84 MNISKNSFEGNIPSSIAKMQGLRFLDVSTN-NFAGELSQSLVTNCFSLIWLDLSNN-NFDGQ-IFPNYMNLT-QLQLLYL 159 (580)
Q Consensus 84 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~l 159 (580)
|++++|.+++..+..++.+++|++|++++| .+++......+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777777766666666777777777777776 4553222333456667777777766 66543 334455566 6666666
Q ss_pred cCc--ccc-ccccccccCCCCCCEEEcccCC-CCCCCchhhhcCCCCCEEEcccCc-CCCcCchhccCCCCCcEEEccCC
Q 036717 160 DNN--HFS-GKIKDGLLRSTELMVLDISNNR-LSGHIPSWMGNFSYLQILSMSKNL-LEGNIPVQFNDLLDLEILNISEN 234 (580)
Q Consensus 160 ~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 234 (580)
++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 666 333 2334444555666666666665 444444555555666666666553 11111123444555555555544
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.2e-22 Score=191.16 Aligned_cols=195 Identities=14% Similarity=0.151 Sum_probs=100.8
Q ss_pred CCcEEEcccCcCccccchhhhcCCCCCEEEcccCc-CccccchHHHhCCCCCcEEEccc-ccCCCcCCccccCCCCCCEE
Q 036717 80 KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN-FAGELSQSLVTNCFSLIWLDLSN-NNFDGQIFPNYMNLTQLQLL 157 (580)
Q Consensus 80 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 157 (580)
+|++|++++|++++..+..|+++++|++|++++|. ++ .++...+.++++|++|++++ |.++...+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 45555555555554444455555555555555554 44 44443445555555555555 55554444455555555555
Q ss_pred eccCccccccccccccCCCCCC---EEEcccC-CCCCCCchhhhcCCCCC-EEEcccCcCCCcCchhccCCCCCcEEEcc
Q 036717 158 YLDNNHFSGKIKDGLLRSTELM---VLDISNN-RLSGHIPSWMGNFSYLQ-ILSMSKNLLEGNIPVQFNDLLDLEILNIS 232 (580)
Q Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (580)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++...+..|.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 555555553 333 44455554 5555555 55544444455555555 5555555555322333333 556666666
Q ss_pred CCc-CccccCCcc-CC-CCCcEEEeeCCcCcccCChhccCCCCccEEeCCCC
Q 036717 233 ENN-LSGSMISTL-NL-SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDN 281 (580)
Q Consensus 233 ~n~-l~~~~~~~~-~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 281 (580)
+|. +++.++..+ .+ ++|++|++++|.+++. |.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 663 555544444 44 5666666666666532 222 3455666666554
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=198.31 Aligned_cols=225 Identities=16% Similarity=0.107 Sum_probs=137.6
Q ss_pred CccEEEccCCCCCccCChhH--hhcCCCCcEEEcccCcCccccchhh--hcCCCCCEEEcccCcCccccc---hHHHhCC
Q 036717 55 GLLSLDISKNSFTGELPQNM--GIVLQKLVYMNISKNSFEGNIPSSI--AKMQGLRFLDVSTNNFAGELS---QSLVTNC 127 (580)
Q Consensus 55 ~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~~~l 127 (580)
.++.+.+.++.++...-..+ +..+++|++|++++|.+++..|..+ +.+++|++|++++|.+++..+ ...+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46777777776653211111 1134678888888888887777777 778888888888888875433 2223467
Q ss_pred CCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccc--c--cccccCCCCCCEEEcccCCCCCCCch----hhhcC
Q 036717 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK--I--KDGLLRSTELMVLDISNNRLSGHIPS----WMGNF 199 (580)
Q Consensus 128 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l 199 (580)
++|++|++++|.+.+..+..|..+++|++|++++|++.+. . +..+..+++|++|++++|.++. ++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 7888888888888777777777888888888888876542 1 1223567777778888777762 232 24566
Q ss_pred CCCCEEEcccCcCCCcCchhccCC---CCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEE
Q 036717 200 SYLQILSMSKNLLEGNIPVQFNDL---LDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETL 276 (580)
Q Consensus 200 ~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 276 (580)
++|++|++++|.+.+..|..+..+ ++|++|++++|.++..+... .++|++|++++|++++. |. +..+++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 777777777777776656555544 45666666666555332222 14444445544444422 21 3334444444
Q ss_pred eCCCCcCc
Q 036717 277 DLRDNNFS 284 (580)
Q Consensus 277 ~l~~n~l~ 284 (580)
++++|+++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 44444443
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.1e-21 Score=191.69 Aligned_cols=192 Identities=23% Similarity=0.325 Sum_probs=114.9
Q ss_pred CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc
Q 036717 52 AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI 131 (580)
Q Consensus 52 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 131 (580)
.+++|++|++++|.+. .++. + ..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~~-~-~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIEG-V-QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTTCC
T ss_pred HcCCcCEEEeeCCCcc-Cchh-h-hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh--hcCCCCCC
Confidence 4455566666665555 3442 2 346666666666666664332 666666666666666665 3332 45566666
Q ss_pred EEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCc
Q 036717 132 WLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNL 211 (580)
Q Consensus 132 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 211 (580)
+|++++|.+++. +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 666666666542 225666666666666666654332 5566666666666666664322 6666667777777776
Q ss_pred CCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCc
Q 036717 212 LEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALG 260 (580)
Q Consensus 212 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 260 (580)
+++..+ +..+++|++|++++|.+++..+ ...+++|++|++++|.++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 664332 5666677777777777666553 336677777777777775
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=4.8e-22 Score=187.09 Aligned_cols=179 Identities=17% Similarity=0.189 Sum_probs=113.2
Q ss_pred CCCCEEEcccCcCccccchHHHhCCCCCcEEEccccc-CCCcCCccccCCCCCCEEeccC-ccccccccccccCCCCCCE
Q 036717 103 QGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNN-FDGQIFPNYMNLTQLQLLYLDN-NHFSGKIKDGLLRSTELMV 180 (580)
Q Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~ 180 (580)
++|++|++++|+++ .++...+.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 36777777777777 5555556677777777777775 6655555677777777777776 7777655566677777777
Q ss_pred EEcccCCCCCCCchhhhcCCCCC---EEEcccC-cCCCcCchhccCCCCCc-EEEccCCcCccccCCccCCCCCcEEEee
Q 036717 181 LDISNNRLSGHIPSWMGNFSYLQ---ILSMSKN-LLEGNIPVQFNDLLDLE-ILNISENNLSGSMISTLNLSSVEHLYLQ 255 (580)
Q Consensus 181 L~L~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 255 (580)
|++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++..+...+..++|++|+++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 7777777764 444 66666666 7777776 66655555566666666 6666666666544444433555555555
Q ss_pred CCc-CcccCChhccCC-CCccEEeCCCCcCc
Q 036717 256 NNA-LGGSIPNTFFRG-SALETLDLRDNNFS 284 (580)
Q Consensus 256 ~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~ 284 (580)
+|. +++..+..|..+ ++|+.|++++|+++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 553 554444445555 55555555555554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.9e-21 Score=184.27 Aligned_cols=179 Identities=22% Similarity=0.283 Sum_probs=110.0
Q ss_pred CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717 55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD 134 (580)
Q Consensus 55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 134 (580)
..+.++++++.++ .+|..+ .++++.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence 3455666666665 555543 246666666666666666666666666666666666666 34444445666666666
Q ss_pred cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCC
Q 036717 135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214 (580)
Q Consensus 135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 214 (580)
+++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 66666665555556666666666666666665555555666666666666666665555556666666666666666665
Q ss_pred cCchhccCCCCCcEEEccCCcCcc
Q 036717 215 NIPVQFNDLLDLEILNISENNLSG 238 (580)
Q Consensus 215 ~~~~~~~~l~~L~~L~l~~n~l~~ 238 (580)
..+..|..+++|+.|++++|.+..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 555556666666666666665543
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.2e-22 Score=196.08 Aligned_cols=200 Identities=21% Similarity=0.194 Sum_probs=113.8
Q ss_pred CCCcEEEcccccCCCcCCccc--cCCCCCCEEeccCcccccccc----ccccCCCCCCEEEcccCCCCCCCchhhhcCCC
Q 036717 128 FSLIWLDLSNNNFDGQIFPNY--MNLTQLQLLYLDNNHFSGKIK----DGLLRSTELMVLDISNNRLSGHIPSWMGNFSY 201 (580)
Q Consensus 128 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 201 (580)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|+.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555555555544 555555566665555554322 22334556666666666665555555556666
Q ss_pred CCEEEcccCcCCCc--C--chhccCCCCCcEEEccCCcCccccCC---cc-CCCCCcEEEeeCCcCcccCChhccCC---
Q 036717 202 LQILSMSKNLLEGN--I--PVQFNDLLDLEILNISENNLSGSMIS---TL-NLSSVEHLYLQNNALGGSIPNTFFRG--- 270 (580)
Q Consensus 202 L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~---~~-~~~~L~~L~l~~n~l~~~~~~~~~~~--- 270 (580)
|++|++++|++.+. . +..+..+++|++|++++|.++..+.. .+ .+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 66666666655421 1 12234556666666666666533221 11 45666666666666665555555554
Q ss_pred CCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeec
Q 036717 271 SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLY 332 (580)
Q Consensus 271 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 332 (580)
++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 46777777777776 4555443 5677777777777643 22 456677777777777765
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.7e-21 Score=189.00 Aligned_cols=193 Identities=19% Similarity=0.274 Sum_probs=138.7
Q ss_pred cCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717 77 VLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL 156 (580)
Q Consensus 77 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 156 (580)
.+++|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++. +.+..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 45677888888887774 34 5777788888888888777 4554 56777888888888877653 35777788888
Q ss_pred EeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcC
Q 036717 157 LYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL 236 (580)
Q Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 236 (580)
|++++|.+++. + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 88888877753 2 27777788888888887775433 7777788888888887774333 77777888888888877
Q ss_pred ccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcc
Q 036717 237 SGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285 (580)
Q Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 285 (580)
++.++ ...+++|++|++++|.+++.. .+..+++|+.|++++|++++
T Consensus 186 ~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 76554 336777888888888777544 36777788888888887764
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=6e-21 Score=190.25 Aligned_cols=243 Identities=19% Similarity=0.184 Sum_probs=150.0
Q ss_pred cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcE-EEc
Q 036717 57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIW-LDL 135 (580)
Q Consensus 57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L 135 (580)
++++.++++++ ++|..+ .+++++|+|++|+|+.+.+.+|+++++|++|+|++|.+.+.++...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56677777777 677655 3567777777777775545567777777777777777765666666666666554 444
Q ss_pred ccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCc
Q 036717 136 SNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN 215 (580)
Q Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 215 (580)
+.|+++...+..|..+++|++|++++|++....+..+....++..+++.++ +.+...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 556666555555666666666666666665443333334444444444332 233323
Q ss_pred CchhccCCC-CCcEEEccCCcCccccCCccCCCCCcEEEeeC-CcCcccCChhccCCCCccEEeCCCCcCcccCchhhcc
Q 036717 216 IPVQFNDLL-DLEILNISENNLSGSMISTLNLSSVEHLYLQN-NALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE 293 (580)
Q Consensus 216 ~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 293 (580)
.+..|..+. .++.|++++|.++.++...+...+|+++++.+ |.++...+..|..+++|++|++++|+++...+..+
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~-- 222 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL-- 222 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh--
Confidence 333444443 46667777777777666666666777777764 55654444567788888888888888884433333
Q ss_pred CcCcceeecccccccccCcccccCCCCCCEEEeeCCe
Q 036717 294 HSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNR 330 (580)
Q Consensus 294 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 330 (580)
.+|+.|.+.++.--..+| .+..+++|+.++++++.
T Consensus 223 -~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 223 -ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp -TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred -ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 445555544443233555 37778889998887543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1e-20 Score=188.55 Aligned_cols=224 Identities=18% Similarity=0.154 Sum_probs=158.5
Q ss_pred CEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccccc-ccccCCCCCCE-EEc
Q 036717 106 RFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIK-DGLLRSTELMV-LDI 183 (580)
Q Consensus 106 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~L 183 (580)
++++.+++.++ ++|..+ .+++++|+|++|+|+...+.+|.++++|++|++++|.+.+.++ ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666666 666543 2466777777777765555567777777777777777654443 45667777664 555
Q ss_pred ccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccC-CcCccccCCcc-C-CCCCcEEEeeCCcCc
Q 036717 184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE-NNLSGSMISTL-N-LSSVEHLYLQNNALG 260 (580)
Q Consensus 184 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~-~-~~~L~~L~l~~n~l~ 260 (580)
+.|++....|..|..+++|++|++++|.+....+..+....++..+++.+ +.+...+...+ . ...++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 66777766677788888888888888888766666677777888898865 56777766655 3 357899999999999
Q ss_pred ccCChhccCCCCccEEeCCC-CcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccCh
Q 036717 261 GSIPNTFFRGSALETLDLRD-NNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA 337 (580)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 337 (580)
. ++.......+|+++++++ |.++...+..|..+++|++|++++|+++...+..+ .+|+.|.+.++.--..+|.
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC
Confidence 5 444444567899999986 56664444678999999999999999996555444 4566666655544446663
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=4.3e-21 Score=177.62 Aligned_cols=158 Identities=21% Similarity=0.242 Sum_probs=127.1
Q ss_pred cEEeCCCCcCcccCchhhccCcCcceeecccccccccCc-ccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCc
Q 036717 274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP-HQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL 352 (580)
Q Consensus 274 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~ 352 (580)
+.+++++|.++ .+|..+. ..++.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 46777777766 3454432 345777777777776543 44677888888888888877544433322
Q ss_pred cccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCccccc
Q 036717 353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD 432 (580)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 432 (580)
+++|+.|+|++|.+++..+..|..
T Consensus 80 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~ 103 (220)
T 2v70_A 80 --------------------------------------------------------ASGVNEILLTSNRLENVQHKMFKG 103 (220)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCCCCGGGGTT
T ss_pred --------------------------------------------------------CCCCCEEECCCCccCccCHhHhcC
Confidence 678888999999998888888999
Q ss_pred ccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCC
Q 036717 433 LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501 (580)
Q Consensus 433 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 501 (580)
+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|+++|.|+..
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 999999999999999988999999999999999999999988999999999999999999999988743
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.3e-20 Score=171.46 Aligned_cols=179 Identities=21% Similarity=0.196 Sum_probs=93.9
Q ss_pred EEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcC
Q 036717 36 VLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115 (580)
Q Consensus 36 ~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 115 (580)
.++++++.++.++ ....++|++|++++|.++ .++...+..+++|++|++++|++++..+..|..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVP-TGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCC-SCCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCC-CCCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3444444444331 122334555555555555 34443334555566666666655544444455556666666666655
Q ss_pred ccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchh
Q 036717 116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW 195 (580)
Q Consensus 116 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 195 (580)
+ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 89 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 89 Q-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred C-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 5 4444444555556666666665554444445555666666666665554444445555566666666654432
Q ss_pred hhcCCCCCEEEcccCcCCCcCchhccCCC
Q 036717 196 MGNFSYLQILSMSKNLLEGNIPVQFNDLL 224 (580)
Q Consensus 196 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 224 (580)
.+++|+.|+++.|.+++.+|..++.++
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred --CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 234555555566665555555555443
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=6.1e-21 Score=176.61 Aligned_cols=157 Identities=21% Similarity=0.276 Sum_probs=128.1
Q ss_pred cEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCcc
Q 036717 274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLY 353 (580)
Q Consensus 274 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~ 353 (580)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+++..|..+..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 46677777776 4554443 56777888888777666667777888888888888887555554432
Q ss_pred ccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccc
Q 036717 354 QLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDL 433 (580)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 433 (580)
+++|+.|+|++|.+++..+..|..+
T Consensus 79 -------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 79 -------------------------------------------------------LRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp -------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred -------------------------------------------------------CcCCCEEECCCCcCCccCHhHccCC
Confidence 6788888888888886666778999
Q ss_pred cCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717 434 QNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 434 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 500 (580)
++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++.|.|+-
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 9999999999999998899999999999999999999988888899999999999999999998763
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.6e-20 Score=169.46 Aligned_cols=177 Identities=18% Similarity=0.234 Sum_probs=79.6
Q ss_pred cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717 57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS 136 (580)
Q Consensus 57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 136 (580)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|+.+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 34555555554 444332 235555555555555444444455555555555555554 3333333444444444444
Q ss_pred cccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcC
Q 036717 137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNI 216 (580)
Q Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 216 (580)
+|.+++.. +..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 85 ~n~l~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 85 TNQLQSLP------------------------NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp SSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCccC------------------------HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 44444332 233334444444444444444333333444444444444444444333
Q ss_pred chhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhcc
Q 036717 217 PVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFF 268 (580)
Q Consensus 217 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 268 (580)
+..|..+++|+.|++++|.+.+ .++.|++|++..|.+++.+|..++
T Consensus 141 ~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 141 DGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred HHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeeccCc
Confidence 3334444444444444443322 223444444444444444444443
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=4.2e-20 Score=184.86 Aligned_cols=180 Identities=26% Similarity=0.223 Sum_probs=135.0
Q ss_pred cEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhc-cCcCcceeecccccccccCcccccCCCCCCEEEeeC
Q 036717 250 EHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQIN-EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSH 328 (580)
Q Consensus 250 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 328 (580)
+.++++++.++ .+|..+. +.++.|++++|++++..+..+. .+++|+.|++++|.+++..+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666666666 3454332 3567777777777766666666 777788888888877776667778888888888888
Q ss_pred CeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccc
Q 036717 329 NRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI 408 (580)
Q Consensus 329 n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (580)
|++++..+..+..
T Consensus 98 N~l~~~~~~~~~~------------------------------------------------------------------- 110 (361)
T 2xot_A 98 NHLHTLDEFLFSD------------------------------------------------------------------- 110 (361)
T ss_dssp SCCCEECTTTTTT-------------------------------------------------------------------
T ss_pred CcCCcCCHHHhCC-------------------------------------------------------------------
Confidence 8876433322221
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccc---cCcccCCEEECCCCcccccCchhhcCCCC--
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESF---SNLKMIESLDLSHNKLNGQIPPQLTELHS-- 483 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-- 483 (580)
+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+..| ..+++|+.|+|++|+|++..+..+..++.
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 6788888888888888888889999999999999999996555555 56899999999999999777778888887
Q ss_pred CCEEeccCCcccccCC
Q 036717 484 LSKFDVSYNNLSGPIP 499 (580)
Q Consensus 484 L~~L~Ls~N~l~~~~p 499 (580)
++.|+|++|++.|.|.
T Consensus 191 l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 191 KNGLYLHNNPLECDCK 206 (361)
T ss_dssp HTTEECCSSCEECCHH
T ss_pred cceEEecCCCccCCcC
Confidence 4889999999998775
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.4e-19 Score=189.71 Aligned_cols=180 Identities=23% Similarity=0.326 Sum_probs=78.8
Q ss_pred CCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEccc
Q 036717 33 KLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVST 112 (580)
Q Consensus 33 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (580)
+++.|+|++|.+++++. ...++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD-NLPPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCS-CCCTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCH-hHcCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 44444444444444211 12244444444444444 344 123444444444444443 333 322 444444444
Q ss_pred CcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCC
Q 036717 113 NNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192 (580)
Q Consensus 113 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 192 (580)
|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 130 N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 130 NQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 44442 333 34444455555444443 222 33445555555554443 333 32 44555555555444 23
Q ss_pred chhhhcCCCC-------CEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcccc
Q 036717 193 PSWMGNFSYL-------QILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240 (580)
Q Consensus 193 ~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 240 (580)
|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 33 222 33 55555555554 34444444555555555555554433
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.1e-19 Score=190.51 Aligned_cols=185 Identities=24% Similarity=0.287 Sum_probs=96.8
Q ss_pred CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEc
Q 036717 104 GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDI 183 (580)
Q Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 183 (580)
+|+.|++++|.++ .+|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 6666666666666 355533 255666666666665 333 335666666666666664 444 433 6666666
Q ss_pred ccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccC
Q 036717 184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSI 263 (580)
Q Consensus 184 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 263 (580)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++.+. +. ++|+.|++++|.++ .+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCS-SC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCC-ch
Confidence 6666654 333 45566666666666653 333 34555555555555555333 22 55555555555555 33
Q ss_pred ChhccCCCCc-------cEEeCCCCcCcccCchhhccCcCcceeecccccccccCccccc
Q 036717 264 PNTFFRGSAL-------ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLC 316 (580)
Q Consensus 264 ~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 316 (580)
|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|.+++.+|..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 33 322 34 55555555554 3444444455555555555555444444443
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1e-19 Score=169.49 Aligned_cols=161 Identities=23% Similarity=0.248 Sum_probs=129.0
Q ss_pred ccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCc
Q 036717 273 LETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL 352 (580)
Q Consensus 273 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~ 352 (580)
.+.++.+++.++ .+|..+. ++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 456777777766 4554433 67888888888888777777888888888888888875322222221
Q ss_pred cccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCccccc
Q 036717 353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD 432 (580)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 432 (580)
+++|+.|+|++|++++..+..|..
T Consensus 87 --------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 87 --------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred --------------------------------------------------------CCCcCEEECCCCcCCccChhHhCc
Confidence 678888999999998777788899
Q ss_pred ccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCccc
Q 036717 433 LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQF 504 (580)
Q Consensus 433 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 504 (580)
+++|++|+|++|.++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|+++|.|+....+
T Consensus 111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l 181 (229)
T 3e6j_A 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYL 181 (229)
T ss_dssp CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHH
T ss_pred chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHH
Confidence 999999999999999 78888999999999999999999887788999999999999999999988744333
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.7e-19 Score=171.45 Aligned_cols=168 Identities=21% Similarity=0.325 Sum_probs=77.9
Q ss_pred CCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEe
Q 036717 79 QKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLY 158 (580)
Q Consensus 79 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 158 (580)
++|++|++++|.++.. + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++ .+.+..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEEE
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCEEE
Confidence 3444444444444322 1 2344444444444444444 2222 2344444444444444432 12244444444444
Q ss_pred ccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcc
Q 036717 159 LDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSG 238 (580)
Q Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 238 (580)
+++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 444444432 2344455555555555555432 334555555555555555553322 5555555555555555554
Q ss_pred ccCCccCCCCCcEEEeeCCcCc
Q 036717 239 SMISTLNLSSVEHLYLQNNALG 260 (580)
Q Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~ 260 (580)
.. ....+++|+.|++++|.++
T Consensus 193 l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CG-GGTTCTTCSEEEEEEEEEE
T ss_pred Ch-hhccCCCCCEEECcCCccc
Confidence 32 1225556666666666555
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.3e-18 Score=168.28 Aligned_cols=189 Identities=21% Similarity=0.294 Sum_probs=136.7
Q ss_pred EEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcC
Q 036717 36 VLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115 (580)
Q Consensus 36 ~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 115 (580)
.+.+..+.+++......+++|+.|++++|.+. .++. + ..+++|++|++++|++++..+ ++.+++|++|++++|.+
T Consensus 28 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHTTCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHHhcCCCcccccchhhcCcccEEEccCCCcc-cChh-H-hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 34455555554322335667777777777776 4443 2 357788888888888875443 77788888888888887
Q ss_pred ccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchh
Q 036717 116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW 195 (580)
Q Consensus 116 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 195 (580)
+ .++. +..+++|++|++++|.+++. +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+
T Consensus 103 ~-~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 103 K-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp C-CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred C-CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence 7 4444 57778888888888887753 5677788888888888888754 567788888888888888886544
Q ss_pred hhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcccc
Q 036717 196 MGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240 (580)
Q Consensus 196 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 240 (580)
+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+...+
T Consensus 174 l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 78888888888888888743 3 4788888888888888877643
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5.9e-19 Score=187.04 Aligned_cols=191 Identities=20% Similarity=0.280 Sum_probs=111.2
Q ss_pred CcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccC
Q 036717 34 LEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTN 113 (580)
Q Consensus 34 L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (580)
+..+.++.+.+.+......+++|+.|++++|.+. .++. + ..+++|+.|+|++|.+++..| +..+++|++|+|++|
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~-l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT-G-GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH-H-ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 3334444444444322234555666666666655 3432 2 346666666666666664433 666666666666666
Q ss_pred cCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCc
Q 036717 114 NFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIP 193 (580)
Q Consensus 114 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 193 (580)
.+. .++. +..+++|++|+|++|.+.+. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 98 ~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 98 KIK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CCC-CCTT--STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCC-CChh--hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 665 3332 45666666666666666542 3455666666666666666643 445666666666666666665444
Q ss_pred hhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcccc
Q 036717 194 SWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240 (580)
Q Consensus 194 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 240 (580)
+..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+.+
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 66666666666666666643 24666666666666666665543
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=6.2e-19 Score=176.37 Aligned_cols=175 Identities=22% Similarity=0.245 Sum_probs=104.3
Q ss_pred cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhh-cCCCCCEEEcccCcCccccchHHHhCCCCCcEEEc
Q 036717 57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIA-KMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDL 135 (580)
Q Consensus 57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 135 (580)
+.++++++.++ .+|..+ .+.++.|+|++|++++..+..+. .+++|++|+|++|.++ .++...+.++++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 45666666666 555543 24466666666666655555555 6666666666666666 444444566666666666
Q ss_pred ccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhh---hcCCCCCEEEcccCcC
Q 036717 136 SNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWM---GNFSYLQILSMSKNLL 212 (580)
Q Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l 212 (580)
++|+++...+..|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..| ..+++|+.|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 6666665555556666666666666666665556666666666666666666664433333 4466666666666666
Q ss_pred CCcCchhccCCCC--CcEEEccCCcC
Q 036717 213 EGNIPVQFNDLLD--LEILNISENNL 236 (580)
Q Consensus 213 ~~~~~~~~~~l~~--L~~L~l~~n~l 236 (580)
+...+..+..++. ++.|++++|.+
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CccCHHHhhhccHhhcceEEecCCCc
Confidence 6444445555544 24555555544
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=159.48 Aligned_cols=151 Identities=17% Similarity=0.287 Sum_probs=78.0
Q ss_pred EEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccc-hhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717 58 SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP-SSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS 136 (580)
Q Consensus 58 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 136 (580)
.+++++|.++ .+|..+ .+.+++|++++|++++..+ ..|..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence 4444444444 344432 2334455555555554322 23455555555555555554 3333334455555555555
Q ss_pred cccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCC
Q 036717 137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE 213 (580)
Q Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 213 (580)
+|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555444444555555555555555555555555555555555555555555555555555556666666655554
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.8e-18 Score=183.28 Aligned_cols=190 Identities=18% Similarity=0.218 Sum_probs=155.8
Q ss_pred CCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEccc
Q 036717 9 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISK 88 (580)
Q Consensus 9 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 88 (580)
+..+.++.+.+.+.++ ...+++|+.|++++|.+..++....+++|+.|+|++|.+.+ ++. +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcC
Confidence 3445667777774433 34688899999999998887655688999999999999984 444 45799999999999
Q ss_pred CcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccc
Q 036717 89 NSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKI 168 (580)
Q Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (580)
|.+++ +| .+..+++|++|+|++|.+. .++. +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 99985 33 7889999999999999998 4543 57899999999999999864 67889999999999999998765
Q ss_pred cccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCc
Q 036717 169 KDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN 215 (580)
Q Consensus 169 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 215 (580)
| +..+++|+.|+|++|.+.+. + .+..+++|+.|++++|.+.+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred h--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 5 88899999999999999854 3 588899999999999988754
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.6e-18 Score=157.93 Aligned_cols=151 Identities=22% Similarity=0.283 Sum_probs=72.4
Q ss_pred cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717 57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS 136 (580)
Q Consensus 57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 136 (580)
+.++++++.++ .+|..+ .++++.|++++|.+++..+..|..+++|++|+|++|.++ .++...+.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence 34555555555 455433 245555555555555444445555555555555555555 2322223445555555555
Q ss_pred cccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcC
Q 036717 137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLL 212 (580)
Q Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 212 (580)
+|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5555433333344444555555555444444444444444444444444444443333444444444444444443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=6.7e-18 Score=157.23 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=110.0
Q ss_pred CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717 55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD 134 (580)
Q Consensus 55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 134 (580)
.-+.++.+++.++ .+|..+ .++|++|++++|.+++..|..|..+++|++|+|++|.+. .++...+..+++|++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 3566777777776 677654 377888888888888777778888888888888888876 66666667777777777
Q ss_pred cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCC
Q 036717 135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214 (580)
Q Consensus 135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 214 (580)
+++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 7777777655556677777777777777776 556666666777777777777665555556666666666666666553
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=9.4e-19 Score=172.80 Aligned_cols=101 Identities=18% Similarity=0.082 Sum_probs=49.7
Q ss_pred CCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCcc-EEeCCCCcCcccCchhhccCcCccee
Q 036717 223 LLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALE-TLDLRDNNFSGRIPHQINEHSNLRAL 300 (580)
Q Consensus 223 l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L 300 (580)
+++|+.+++++|.++.++...+ .+++|+++++.+| ++.+.+.+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 3444444444444444444433 4444444444444 3334444455555555 555554 4443444555555555555
Q ss_pred ecccccccccCcccccCCCCCCEEE
Q 036717 301 LLRANYLQGPIPHQLCRLRKLGIMD 325 (580)
Q Consensus 301 ~l~~n~l~~~~~~~~~~l~~L~~L~ 325 (580)
+++.|.++...+.+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 5555555544445555555555543
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=8.6e-19 Score=158.47 Aligned_cols=92 Identities=25% Similarity=0.390 Sum_probs=82.0
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 488 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 488 (580)
+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 67788888888888888888899999999999999999988888899999999999999999988899999999999999
Q ss_pred ccCCcccccCCC
Q 036717 489 VSYNNLSGPIPD 500 (580)
Q Consensus 489 Ls~N~l~~~~p~ 500 (580)
+++|+++|.++.
T Consensus 133 L~~N~l~c~c~l 144 (192)
T 1w8a_A 133 LASNPFNCNCHL 144 (192)
T ss_dssp CTTCCBCCSGGG
T ss_pred eCCCCccCcCcc
Confidence 999999988874
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.3e-18 Score=155.45 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=111.5
Q ss_pred hCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEE
Q 036717 29 ENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFL 108 (580)
Q Consensus 29 ~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 108 (580)
..+++|++|++++|.++.++....+++|++|++++|.+. .++ .+ ..+++|++|++++|++++..+..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN-PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG-GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch-hh-hcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 356778888888887776554446778888888888665 333 33 367888888888888887677788888888888
Q ss_pred EcccCcCccccchHHHhCCCCCcEEEccccc-CCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCC
Q 036717 109 DVSTNNFAGELSQSLVTNCFSLIWLDLSNNN-FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187 (580)
Q Consensus 109 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 187 (580)
++++|.+++..+.. +..+++|++|++++|. ++. ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTK-INTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHH-HhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 88888887545544 4778888888888887 543 33 577888888888888888753 3 57778888888888887
Q ss_pred CC
Q 036717 188 LS 189 (580)
Q Consensus 188 l~ 189 (580)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 65
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=7.7e-18 Score=153.01 Aligned_cols=152 Identities=15% Similarity=0.240 Sum_probs=85.4
Q ss_pred cCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717 77 VLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL 156 (580)
Q Consensus 77 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 156 (580)
.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+..+..+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3456666666666665 334 4566666666666666544 232 2355666666666666665545555666666666
Q ss_pred EeccCccccccccccccCCCCCCEEEcccCC-CCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCc
Q 036717 157 LYLDNNHFSGKIKDGLLRSTELMVLDISNNR-LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235 (580)
Q Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 235 (580)
|++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|+.|++++|.+++. + .+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 6666666665555556666666666666665 44 333 455566666666666665532 2 45555555555555555
Q ss_pred Cc
Q 036717 236 LS 237 (580)
Q Consensus 236 l~ 237 (580)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 43
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.8e-17 Score=149.70 Aligned_cols=155 Identities=26% Similarity=0.319 Sum_probs=115.4
Q ss_pred cEEeCCCCcCcccCchhhccCcCcceeecccccccccCcc-cccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCc
Q 036717 274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH-QLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL 352 (580)
Q Consensus 274 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~ 352 (580)
+.+++++|+++ .+|..+.. ++++|++++|.+++..+. .+..+++|+.|++++|.+++..|..+..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 57777777775 55554432 778888888888765554 4778888888888888887666655433
Q ss_pred cccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCccccc
Q 036717 353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD 432 (580)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 432 (580)
+++|+.|+|++|++++..+..|.+
T Consensus 77 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~ 100 (192)
T 1w8a_A 77 --------------------------------------------------------ASHIQELQLGENKIKEISNKMFLG 100 (192)
T ss_dssp --------------------------------------------------------CTTCCEEECCSCCCCEECSSSSTT
T ss_pred --------------------------------------------------------cccCCEEECCCCcCCccCHHHhcC
Confidence 678888999999999888888999
Q ss_pred ccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchh-hcCCCCCCEEeccCCcccccCCC
Q 036717 433 LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 433 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~ 500 (580)
+++|++|+|++|++++.+|..|..+++|++|+|++|.+.+..+-. +. ..++...+..+...|..|.
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSST
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCCh
Confidence 999999999999999999999999999999999999998765522 11 1122234455566665554
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.4e-17 Score=156.83 Aligned_cols=168 Identities=22% Similarity=0.306 Sum_probs=107.4
Q ss_pred CCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEcc
Q 036717 153 QLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNIS 232 (580)
Q Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (580)
++..++++++.+++.. .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444444445444222 34445555555555555552 23 35555666666666666553332 5566666666666
Q ss_pred CCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCc
Q 036717 233 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP 312 (580)
Q Consensus 233 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 312 (580)
+|.+++.+... . ++|++|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|.+++.
T Consensus 94 ~N~l~~l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 94 RNRLKNLNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SSCCSCCTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCccCCcCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 66665543322 2 6777777777777743 3577788888888888888754 3 577788888888888888865
Q ss_pred ccccCCCCCCEEEeeCCeecCc
Q 036717 313 HQLCRLRKLGIMDLSHNRLYGS 334 (580)
Q Consensus 313 ~~~~~l~~L~~L~l~~n~l~~~ 334 (580)
..+..+++|+.|++++|++++.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHhccCCCCCEEeCCCCcccCC
Confidence 6677888888888888888744
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=3.4e-17 Score=155.77 Aligned_cols=147 Identities=21% Similarity=0.320 Sum_probs=67.8
Q ss_pred cCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717 77 VLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL 156 (580)
Q Consensus 77 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 156 (580)
.+++|++|++++|.++. ++ .++.+++|++|++++|.++ .++. +..+++|++|++++|++++. +. +.. ++|++
T Consensus 39 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~ 110 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSR 110 (263)
T ss_dssp HHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCE
T ss_pred hcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCc-Cc-ccc-CcccE
Confidence 34555555555555542 22 4455555555555555554 2333 34555555555555555432 11 112 45555
Q ss_pred EeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcC
Q 036717 157 LYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL 236 (580)
Q Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 236 (580)
|++++|.+++. +.+..+++|+.|++++|++++. + .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+
T Consensus 111 L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 111 LFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 55555555432 2344455555555555555432 2 344445555555555544433 3344444444444444443
Q ss_pred c
Q 036717 237 S 237 (580)
Q Consensus 237 ~ 237 (580)
.
T Consensus 185 ~ 185 (263)
T 1xeu_A 185 V 185 (263)
T ss_dssp E
T ss_pred c
Confidence 3
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=3.6e-19 Score=187.54 Aligned_cols=184 Identities=20% Similarity=0.212 Sum_probs=142.1
Q ss_pred CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCc-------------CcccCchhhccCcCcceee-ccccccccc
Q 036717 245 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNN-------------FSGRIPHQINEHSNLRALL-LRANYLQGP 310 (580)
Q Consensus 245 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~~~~L~~L~-l~~n~l~~~ 310 (580)
.++.|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+...
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 4667777788888776 667777777788888876654 4556677777777777777 555533211
Q ss_pred Ccc-----cccC--CCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccch
Q 036717 311 IPH-----QLCR--LRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESD 383 (580)
Q Consensus 311 ~~~-----~~~~--l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (580)
... .+.. ...|+.|++++|.+++ +|. +..
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~------------------------------------------ 461 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQ------------------------------------------ 461 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGG------------------------------------------
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccc------------------------------------------
Confidence 000 0110 1257888888888874 453 322
Q ss_pred hhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEE
Q 036717 384 LRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESL 463 (580)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 463 (580)
+++|+.|+|++|.++ .+|..|+.+++|+.|+|++|.+++ +| .++++++|+.|
T Consensus 462 -------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L 513 (567)
T 1dce_A 462 -------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL 513 (567)
T ss_dssp -------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred -------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEE
Confidence 678999999999999 889999999999999999999996 67 89999999999
Q ss_pred ECCCCcccccC-chhhcCCCCCCEEeccCCcccccCCCC
Q 036717 464 DLSHNKLNGQI-PPQLTELHSLSKFDVSYNNLSGPIPDK 501 (580)
Q Consensus 464 ~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 501 (580)
+|++|+|++.. |..+..+++|+.|+|++|++++.+|..
T Consensus 514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred ECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 99999999887 999999999999999999999877643
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=4.1e-19 Score=187.14 Aligned_cols=119 Identities=24% Similarity=0.279 Sum_probs=60.2
Q ss_pred CCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccC
Q 036717 154 LQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE 233 (580)
Q Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (580)
|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 5555555555553 333 555555555555555555 445555555555555555555553 33 455555555555555
Q ss_pred CcCcccc-CCcc-CCCCCcEEEeeCCcCcccCCh---hccCCCCccEEe
Q 036717 234 NNLSGSM-ISTL-NLSSVEHLYLQNNALGGSIPN---TFFRGSALETLD 277 (580)
Q Consensus 234 n~l~~~~-~~~~-~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~ 277 (580)
|.+++.. +..+ .+++|+.|++++|.+++..+. .+..+++|+.|+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5555543 2222 555555555555555543221 122345555554
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.9e-17 Score=163.39 Aligned_cols=259 Identities=12% Similarity=0.050 Sum_probs=144.8
Q ss_pred CCCCcEEEccCCcccCCCCC---CCCCCccEEEccCCCCCcc-CChhHhhcCCCCcEEEcccCcCccccchhhhc-----
Q 036717 31 NTKLEVLYLINNSFSGFQLT---GAQHGLLSLDISKNSFTGE-LPQNMGIVLQKLVYMNISKNSFEGNIPSSIAK----- 101 (580)
Q Consensus 31 l~~L~~L~L~~n~l~~~~~~---~~~~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----- 101 (580)
+.++++|.++++ +...... ..+++|+.|||++|++... .+.. .++.++.+.+..+.+ .+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 456777777754 1111010 1256777777777776510 1111 122234444444432 2345666
Q ss_pred ---CCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccc----cccccccccC
Q 036717 102 ---MQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHF----SGKIKDGLLR 174 (580)
Q Consensus 102 ---l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~l~~ 174 (580)
+++|+.+++.+ .++ .++...|.+|++|+.|++++|.+....+.+|.++.++..+....+.. .......|..
T Consensus 97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77777777777 666 67777777777777777777777666666777766666666544211 1112223333
Q ss_pred CCCCC--------------------------EEEcccCCCCCCCchhh-hcCCCCCEEEcccCcCCCcCchhccCCCCCc
Q 036717 175 STELM--------------------------VLDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQFNDLLDLE 227 (580)
Q Consensus 175 l~~L~--------------------------~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 227 (580)
+..|+ .+.+.++-.. .....+ ..+++|+.+++++|.++...+.+|.++.+|+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 33333 2222221100 000011 1256677777776666655556666666777
Q ss_pred EEEccCCcCccccCCcc-CCCCCc-EEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceee
Q 036717 228 ILNISENNLSGSMISTL-NLSSVE-HLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL 301 (580)
Q Consensus 228 ~L~l~~n~l~~~~~~~~-~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 301 (580)
.+++.+| ++.+....| ++++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|+++...+.+|.++++|+.++
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7777665 555555555 666666 666666 55545556666666777777666666655556666666666654
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=148.93 Aligned_cols=92 Identities=25% Similarity=0.326 Sum_probs=84.9
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 488 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 488 (580)
+++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|+.|+|++|+|++..+..|..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 67888899999999988888899999999999999999998889999999999999999999987777899999999999
Q ss_pred ccCCcccccCCC
Q 036717 489 VSYNNLSGPIPD 500 (580)
Q Consensus 489 Ls~N~l~~~~p~ 500 (580)
+++|++.|.|..
T Consensus 133 L~~N~~~C~c~l 144 (193)
T 2wfh_A 133 IGANPLYCDCNM 144 (193)
T ss_dssp CCSSCEECSGGG
T ss_pred eCCCCeecCCcC
Confidence 999999998863
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=7.7e-16 Score=155.10 Aligned_cols=264 Identities=9% Similarity=0.052 Sum_probs=176.6
Q ss_pred CCCCCcEEEccCCcccCCCCC--CCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCE
Q 036717 30 NNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRF 107 (580)
Q Consensus 30 ~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 107 (580)
.+..++.+.+.++ ++.+... ..+ +|+.+++..+ ++ .++...|.++ +|+.+.+.. .++.+.+.+|.+|++|+.
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3455666665542 2222111 122 5666666555 44 5666666553 577777765 566556667777777777
Q ss_pred EEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCC
Q 036717 108 LDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187 (580)
Q Consensus 108 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 187 (580)
+++.+|.++ .++...|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.
T Consensus 185 l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 185 ADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 777777776 67766665 577777777643 55555667777777887777764 44455556665 677888774 34
Q ss_pred CCCCCchhhhcCCCCCEEEcccCcCC-----CcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcc
Q 036717 188 LSGHIPSWMGNFSYLQILSMSKNLLE-----GNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGG 261 (580)
Q Consensus 188 l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~ 261 (580)
+......+|.++++|+.+++.++.+. ...+.+|.+|++|+.+++. +.++......+ ++++|+.+.+..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 55455667778888888888776654 3556778888888888888 44776666666 6788888888554 665
Q ss_pred cCChhccCCCCccEEeCCCCcCcccCchhhccCc-Ccceeeccccccc
Q 036717 262 SIPNTFFRGSALETLDLRDNNFSGRIPHQINEHS-NLRALLLRANYLQ 308 (580)
Q Consensus 262 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~ 308 (580)
....+|.++ +|+.+++.+|.+....+..|.+++ +++.+.+..+.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 667788888 888888888877755566677664 6788888776544
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=4e-15 Score=149.86 Aligned_cols=271 Identities=15% Similarity=0.131 Sum_probs=202.6
Q ss_pred CCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEE
Q 036717 151 LTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILN 230 (580)
Q Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 230 (580)
+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+......+|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 35666666654 3444555666664 6888887665 554555667764 688888875 55556677888888888888
Q ss_pred ccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccccc
Q 036717 231 ISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGP 310 (580)
Q Consensus 231 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 310 (580)
+++|.++..+...+.+.+|+.+.+..+ ++.....+|..|++|+.+++..+ ++.....+|.. .+|+.+.+. +.++..
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred cCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 888888888888887788999998744 66677788999999999999875 55455666766 789999994 556666
Q ss_pred CcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccc
Q 036717 311 IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQ 390 (580)
Q Consensus 311 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (580)
...+|.+|++|+.+++.+|.+.......+...
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~------------------------------------------------ 294 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY------------------------------------------------ 294 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTT------------------------------------------------
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHH------------------------------------------------
Confidence 77889999999999999887641100000000
Q ss_pred cEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcc
Q 036717 391 VEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL 470 (580)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 470 (580)
.|. .+++|+.+++. +.++.....+|.+|++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+
T Consensus 295 ------------aF~--~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 295 ------------CLE--GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp ------------TTT--TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ------------Hhh--CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 011 17788999998 4587777889999999999999655 776778899999 999999999999
Q ss_pred cccCchhhcCCC-CCCEEeccCCccc
Q 036717 471 NGQIPPQLTELH-SLSKFDVSYNNLS 495 (580)
Q Consensus 471 ~~~~p~~l~~l~-~L~~L~Ls~N~l~ 495 (580)
....+..|.+++ .++.|.+..+.+.
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cccccccccCCCCCccEEEeCHHHHH
Confidence 877788888885 7889998887755
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.2e-17 Score=181.46 Aligned_cols=130 Identities=19% Similarity=0.252 Sum_probs=100.3
Q ss_pred ccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccC
Q 036717 208 SKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRI 287 (580)
Q Consensus 208 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 287 (580)
..|.+. ..+..|..++.|+.|+|++|.+...+...+.+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+
T Consensus 209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 209 IENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp --------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred ccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence 334443 4566777888888888888888866666668888899999999888 77888888999999999999998 77
Q ss_pred chhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhh
Q 036717 288 PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITN 341 (580)
Q Consensus 288 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 341 (580)
|..+..+++|++|+|++|.++ .+|..|..+++|+.|++++|.+++.+|..+..
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 888999999999999999987 67777999999999999999998888877654
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=1.9e-15 Score=152.94 Aligned_cols=225 Identities=9% Similarity=0.113 Sum_probs=111.2
Q ss_pred cCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccc
Q 036717 69 ELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNY 148 (580)
Q Consensus 69 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 148 (580)
+|....|.+|.+|+.+.+.. .++.+...+|.++++|+.+++..+ ++ .++...|.++.+|+.+.+..+ +......+|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence 45555556666677766653 355455556666677777766543 44 555556666666666555433 333333445
Q ss_pred cCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcE
Q 036717 149 MNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI 228 (580)
Q Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 228 (580)
.++..++....... ......+|.++.+|+.+.+..+. ......+|.++.+|+.+.+..+ ++.....+|..+..|+.
T Consensus 137 ~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 137 KGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 55443332222221 11233456666666666665442 2233445666666666666544 33344455666666666
Q ss_pred EEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccc
Q 036717 229 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRA 304 (580)
Q Consensus 229 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 304 (580)
+.+..+... .....+...+|+.+.+... ++......+..+..++.+.+..+... .....|..+..++.+....
T Consensus 213 i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 213 MEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred eecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence 555543321 2222234445555555432 22233344455555555555444322 2333444444444444433
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.8e-17 Score=180.17 Aligned_cols=191 Identities=22% Similarity=0.196 Sum_probs=116.0
Q ss_pred ccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccccc
Q 036717 231 ISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGP 310 (580)
Q Consensus 231 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 310 (580)
+..|.+...+.....++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++ .
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 334444422223337888999999999988 66766778889999999999988 78888888999999999999988 6
Q ss_pred CcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccc
Q 036717 311 IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQ 390 (580)
Q Consensus 311 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (580)
+|..+..+++|+.|++++|.++ .+|..+..
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~------------------------------------------------- 314 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGN------------------------------------------------- 314 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCC-CCCSSTTS-------------------------------------------------
T ss_pred cChhhcCCCCCCEEECCCCCCC-ccChhhhc-------------------------------------------------
Confidence 7888888999999999999886 66655433
Q ss_pred cEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccC-CCeEecccCcceecccccccCcccCCEEECCCC-
Q 036717 391 VEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQN-IHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN- 468 (580)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N- 468 (580)
+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.. |+.|++++|
T Consensus 315 ------------------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~ 370 (727)
T 4b8c_D 315 ------------------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDG 370 (727)
T ss_dssp ------------------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------
T ss_pred ------------------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeeccc
Confidence 678888999999999888888765432 234788999998887764 556677776
Q ss_pred -------cccccCchhhcCCCCCCEEeccCCcccccC
Q 036717 469 -------KLNGQIPPQLTELHSLSKFDVSYNNLSGPI 498 (580)
Q Consensus 469 -------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 498 (580)
.+.+..+..+..+..+....+++|-+.+..
T Consensus 371 ~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 371 EPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp -------------------------------CCCGGG
T ss_pred ccccccCCccccccchhhcccccceeeeecccccccc
Confidence 455555555666777788888888876433
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=3.1e-16 Score=138.48 Aligned_cols=88 Identities=26% Similarity=0.267 Sum_probs=65.3
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecc-cccccCcccCCEEECCCCcccccCc---hhhcCCCCC
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSL 484 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L 484 (580)
+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 556677777777777666666777788888888888887532 2677788888888888888886555 477888888
Q ss_pred CEEeccCCcccc
Q 036717 485 SKFDVSYNNLSG 496 (580)
Q Consensus 485 ~~L~Ls~N~l~~ 496 (580)
++|++++|.+..
T Consensus 150 ~~L~l~~n~~~~ 161 (168)
T 2ell_A 150 TYLDGYDREDQE 161 (168)
T ss_dssp CEETTEETTSCB
T ss_pred cEecCCCCChhh
Confidence 888888887763
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=3.3e-16 Score=138.33 Aligned_cols=138 Identities=25% Similarity=0.279 Sum_probs=119.1
Q ss_pred CCCccEEeCCCCcCc-ccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccC
Q 036717 270 GSALETLDLRDNNFS-GRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVG 348 (580)
Q Consensus 270 ~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~ 348 (580)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------- 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------- 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence 478999999999998 67888889999999999999999866 77899999999999999998766665443
Q ss_pred CCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeC-C
Q 036717 349 NESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNI-P 427 (580)
Q Consensus 349 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~ 427 (580)
+++|+.|++++|.+++.. +
T Consensus 94 ------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~ 113 (168)
T 2ell_A 94 ------------------------------------------------------------LPNLTHLNLSGNKLKDISTL 113 (168)
T ss_dssp ------------------------------------------------------------CTTCCEEECBSSSCCSSGGG
T ss_pred ------------------------------------------------------------CCCCCEEeccCCccCcchhH
Confidence 678999999999999643 2
Q ss_pred cccccccCCCeEecccCcceeccc---ccccCcccCCEEECCCCcccccCchh
Q 036717 428 SEIGDLQNIHGLNLSYNFLSGSIP---ESFSNLKMIESLDLSHNKLNGQIPPQ 477 (580)
Q Consensus 428 ~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~ 477 (580)
..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+. .+|+.
T Consensus 114 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 114 EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 789999999999999999996655 58999999999999999988 44543
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=7.3e-16 Score=137.35 Aligned_cols=93 Identities=24% Similarity=0.242 Sum_probs=81.0
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 488 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 488 (580)
+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 56788888888888877777788999999999999999987778889999999999999999977777788899999999
Q ss_pred ccCCcccccCCCC
Q 036717 489 VSYNNLSGPIPDK 501 (580)
Q Consensus 489 Ls~N~l~~~~p~~ 501 (580)
+++|+++|.+|..
T Consensus 131 l~~N~~~~~~~~l 143 (177)
T 2o6r_A 131 LHTNPWDCSCPRI 143 (177)
T ss_dssp CCSSCBCCCHHHH
T ss_pred ecCCCeeccCccH
Confidence 9999999988744
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=2.9e-16 Score=135.65 Aligned_cols=83 Identities=25% Similarity=0.282 Sum_probs=66.3
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceec-ccccccCcccCCEEECCCCcccccCc---hhhcCCCCC
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSL 484 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L 484 (580)
+++|+.|++++|.+++.+|..++.+++|++|++++|.+++. .+..++.+++|++|++++|++++..+ ..+..+++|
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 56777788888888766777777788888888888888863 34778888889999999998887666 578888889
Q ss_pred CEEeccC
Q 036717 485 SKFDVSY 491 (580)
Q Consensus 485 ~~L~Ls~ 491 (580)
++||+++
T Consensus 143 ~~L~l~d 149 (149)
T 2je0_A 143 TYLDGYD 149 (149)
T ss_dssp CEETTBC
T ss_pred ccccCCC
Confidence 8888864
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=1e-14 Score=147.57 Aligned_cols=318 Identities=9% Similarity=0.033 Sum_probs=210.7
Q ss_pred cCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccccc
Q 036717 90 SFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIK 169 (580)
Q Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (580)
.++.+...+|.++++|+.+.+..+ ++ .++...|.+|++|+.+++.++ ++.....+|.++++|+.+.+..+ +.....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 355556678889999999999754 66 788888889999999998754 55555667888888888777654 343455
Q ss_pred ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCC
Q 036717 170 DGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSS 248 (580)
Q Consensus 170 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~ 248 (580)
.+|..+..++....... ......+|.++++|+.+.+..+.. .....+|.++.+|+.+.+..+ ++......+ .+..
T Consensus 134 ~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccccccCccc--cccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 56666554333333222 223345688888888888876543 355667888888888888765 444444444 6677
Q ss_pred CcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeC
Q 036717 249 VEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSH 328 (580)
Q Consensus 249 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 328 (580)
|+.+.+..+... +......+.+|+.+.+... ++......+..+..++.+.+..+... .....|..+..++.+....
T Consensus 210 L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 210 LENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred cceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence 777766554432 2233344566777776543 23234455666777777777665433 4455666677777666655
Q ss_pred CeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccc
Q 036717 329 NRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI 408 (580)
Q Consensus 329 n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (580)
+.+... .+ ..
T Consensus 286 ~~i~~~---~F-------------------------------------------------------------------~~ 295 (394)
T 4fs7_A 286 VIVPEK---TF-------------------------------------------------------------------YG 295 (394)
T ss_dssp SEECTT---TT-------------------------------------------------------------------TT
T ss_pred eeeccc---cc-------------------------------------------------------------------cc
Confidence 433210 00 01
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 488 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 488 (580)
+.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ ++.....+|.++++|+.++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 566777777654 66566778889999999999754 77666788999999999999877 7666677899999999998
Q ss_pred ccCC
Q 036717 489 VSYN 492 (580)
Q Consensus 489 Ls~N 492 (580)
+..+
T Consensus 373 lp~~ 376 (394)
T 4fs7_A 373 LPKR 376 (394)
T ss_dssp EEGG
T ss_pred ECCC
Confidence 8654
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=7.1e-16 Score=133.16 Aligned_cols=128 Identities=23% Similarity=0.265 Sum_probs=92.6
Q ss_pred CCccEEeCCCCcCc-ccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCC
Q 036717 271 SALETLDLRDNNFS-GRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN 349 (580)
Q Consensus 271 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~ 349 (580)
++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------- 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------- 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence 46777777777776 56666667777777777777777654 56777777888888888777655554332
Q ss_pred CCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceee-CCc
Q 036717 350 ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGN-IPS 428 (580)
Q Consensus 350 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~ 428 (580)
+++|+.|++++|.+++. .+.
T Consensus 87 -----------------------------------------------------------l~~L~~L~ls~N~i~~~~~~~ 107 (149)
T 2je0_A 87 -----------------------------------------------------------CPNLTHLNLSGNKIKDLSTIE 107 (149)
T ss_dssp -----------------------------------------------------------CTTCCEEECTTSCCCSHHHHG
T ss_pred -----------------------------------------------------------CCCCCEEECCCCcCCChHHHH
Confidence 56778888888888753 346
Q ss_pred ccccccCCCeEecccCcceeccc---ccccCcccCCEEECCC
Q 036717 429 EIGDLQNIHGLNLSYNFLSGSIP---ESFSNLKMIESLDLSH 467 (580)
Q Consensus 429 ~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~ 467 (580)
.++.+++|++|++++|.+++..+ ..+..+++|+.||+++
T Consensus 108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 78888888888888888886655 5778888888888763
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=4.7e-15 Score=133.73 Aligned_cols=127 Identities=24% Similarity=0.305 Sum_probs=79.8
Q ss_pred cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717 57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS 136 (580)
Q Consensus 57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 136 (580)
+.+++++|.++ .+|..+ .++|++|++++|.++ .+|..|..+++|++|++++|.++ .++...|.++++|++|+|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence 45666666666 566544 246677777777776 45566677777777777777666 4444445666666666666
Q ss_pred cccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCC
Q 036717 137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS 189 (580)
Q Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 189 (580)
+|.+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66666555556666666666666666666544445556666666666666553
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=9e-15 Score=130.21 Aligned_cols=132 Identities=19% Similarity=0.196 Sum_probs=85.1
Q ss_pred ccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEc
Q 036717 56 LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDL 135 (580)
Q Consensus 56 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 135 (580)
.+.+++++++++ .+|..+ .++|++|++++|++++..+..++.+++|++|++++|.++ .++...+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 356666666666 555443 356777777777777655556677777777777777776 555555566677777777
Q ss_pred ccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCC
Q 036717 136 SNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192 (580)
Q Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 192 (580)
++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 777766555555666677777777777666544444566666666777666666443
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=7.8e-15 Score=130.43 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=76.8
Q ss_pred cccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717 3 LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLV 82 (580)
Q Consensus 3 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 82 (580)
+.++++|++|++++|.++ .+|. +....++|++|++++|.++++.....+++|++|++++|.++ .+|..++..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccc-ccCcchhhcCCCCC
Confidence 345666777777777776 4543 33233467777777776666533345566666666666666 44544444566666
Q ss_pred EEEcccCcCccccch--hhhcCCCCCEEEcccCcCccccchH---HHhCCCCCcEEEcccccC
Q 036717 83 YMNISKNSFEGNIPS--SIAKMQGLRFLDVSTNNFAGELSQS---LVTNCFSLIWLDLSNNNF 140 (580)
Q Consensus 83 ~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l 140 (580)
+|++++|.++ .+|. .++.+++|++|++++|.++ .+|.. .+..+++|++|+++.|..
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6666666665 3343 5566666666666666665 44443 334555555555555543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=1e-16 Score=145.70 Aligned_cols=153 Identities=21% Similarity=0.283 Sum_probs=106.0
Q ss_pred CCCCccEEeCCCCcCcccCch------hhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhh
Q 036717 269 RGSALETLDLRDNNFSGRIPH------QINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNS 342 (580)
Q Consensus 269 ~~~~L~~L~l~~n~l~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 342 (580)
....++.++++++.+++..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~- 91 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV- 91 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-
Confidence 344555566666666555554 77777888888888887775 45 6777788888888888876 45543322
Q ss_pred cccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcc
Q 036717 343 LFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNEL 422 (580)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 422 (580)
+++|+.|++++|++
T Consensus 92 ------------------------------------------------------------------~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 92 ------------------------------------------------------------------ADTLEELWISYNQI 105 (198)
T ss_dssp ------------------------------------------------------------------HHHCSEEEEEEEEC
T ss_pred ------------------------------------------------------------------CCcCCEEECcCCcC
Confidence 46777788888888
Q ss_pred eeeCCcccccccCCCeEecccCcceeccc-ccccCcccCCEEECCCCcccccCchh----------hcCCCCCCEEeccC
Q 036717 423 TGNIPSEIGDLQNIHGLNLSYNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPPQ----------LTELHSLSKFDVSY 491 (580)
Q Consensus 423 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~Ls~ 491 (580)
++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+.+|.. +..+++|++|| +
T Consensus 106 ~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~ 181 (198)
T 1ds9_A 106 AS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G 181 (198)
T ss_dssp CC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--C
T ss_pred Cc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--C
Confidence 75 34 57778888888888888875333 46777888888888888887665542 67778888776 5
Q ss_pred Cccc
Q 036717 492 NNLS 495 (580)
Q Consensus 492 N~l~ 495 (580)
|+++
T Consensus 182 ~~i~ 185 (198)
T 1ds9_A 182 MPVD 185 (198)
T ss_dssp GGGT
T ss_pred cccC
Confidence 6554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=4.6e-15 Score=130.92 Aligned_cols=110 Identities=22% Similarity=0.186 Sum_probs=96.0
Q ss_pred eeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCc
Q 036717 396 MTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 475 (580)
Q Consensus 396 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 475 (580)
++.+.+..++....++++.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|+|++..+
T Consensus 16 ~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~ 95 (170)
T 3g39_A 16 CSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95 (170)
T ss_dssp CTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred eCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH
Confidence 33444555555557899999999999999889999999999999999999998888889999999999999999998888
Q ss_pred hhhcCCCCCCEEeccCCcccccCCCCcccC
Q 036717 476 PQLTELHSLSKFDVSYNNLSGPIPDKEQFS 505 (580)
Q Consensus 476 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 505 (580)
..|..+++|++|+|++|+++|.++...++.
T Consensus 96 ~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~ 125 (170)
T 3g39_A 96 GAFDNLKSLTHIWLLNNPWDCACSDILYLS 125 (170)
T ss_dssp TTTTTCTTCCEEECCSSCBCTTBGGGHHHH
T ss_pred HHhcCCCCCCEEEeCCCCCCCCchhHHHHH
Confidence 889999999999999999999987554443
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.1e-14 Score=129.40 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=71.1
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccc--cccCcccCCEEECCCCcccccCch----hhcCCC
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPE--SFSNLKMIESLDLSHNKLNGQIPP----QLTELH 482 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~ 482 (580)
+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|+.|++++|.++. +|. .+..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCC
Confidence 677888888888888666666688999999999999997 4555 78889999999999999984 555 488899
Q ss_pred CCCEEeccCCcccc
Q 036717 483 SLSKFDVSYNNLSG 496 (580)
Q Consensus 483 ~L~~L~Ls~N~l~~ 496 (580)
+|++||+++|....
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 99999999998764
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=1.1e-14 Score=128.90 Aligned_cols=110 Identities=23% Similarity=0.207 Sum_probs=95.7
Q ss_pred EeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccC
Q 036717 395 FMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474 (580)
Q Consensus 395 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 474 (580)
.+..+.+..++....++|+.|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..
T Consensus 18 ~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~ 97 (174)
T 2r9u_A 18 NCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97 (174)
T ss_dssp ECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC
Confidence 34455556666666789999999999999988999999999999999999999877778899999999999999999877
Q ss_pred chhhcCCCCCCEEeccCCcccccCCCCccc
Q 036717 475 PPQLTELHSLSKFDVSYNNLSGPIPDKEQF 504 (580)
Q Consensus 475 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 504 (580)
+..|..+++|++|+|++|++.+.++...++
T Consensus 98 ~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp TTTTTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred HHHhccccCCCEEEeCCCCcccccccHHHH
Confidence 777999999999999999999988654333
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=2.2e-12 Score=130.44 Aligned_cols=108 Identities=8% Similarity=0.160 Sum_probs=48.7
Q ss_pred hhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcC
Q 036717 218 VQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSN 296 (580)
Q Consensus 218 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 296 (580)
.+|..+..|+.+.+..+.. ......+ +++.|+.+.+. +.++.....+|.+|.+|+.+++.++ ++.....+|.+|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 3444555555555543322 1222222 44555555553 2233333444555555555555433 33233344555555
Q ss_pred cceeecccccccccCcccccCCCCCCEEEeeCC
Q 036717 297 LRALLLRANYLQGPIPHQLCRLRKLGIMDLSHN 329 (580)
Q Consensus 297 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 329 (580)
|+.+.+..+ ++.....+|.+|.+|+.+++.++
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 555555432 33333445555555555555544
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=2.7e-12 Score=129.75 Aligned_cols=81 Identities=10% Similarity=0.219 Sum_probs=43.4
Q ss_pred cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 488 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 488 (580)
+.+|+.+++..+ ++..-..+|.+|.+|+.+.+..+ ++.+-..+|.++++|+.+++.++.... ..+....+|+.+.
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP 384 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence 455566666533 44444566777777777777543 554555677777777777777765432 3455566677666
Q ss_pred ccCCcc
Q 036717 489 VSYNNL 494 (580)
Q Consensus 489 Ls~N~l 494 (580)
+..|.+
T Consensus 385 i~~~~~ 390 (394)
T 4gt6_A 385 VAPGSI 390 (394)
T ss_dssp ------
T ss_pred eCCCCE
Confidence 655543
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.9e-15 Score=137.25 Aligned_cols=138 Identities=22% Similarity=0.283 Sum_probs=119.6
Q ss_pred hccCcCcceeecccccccccCcc------cccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCC
Q 036717 291 INEHSNLRALLLRANYLQGPIPH------QLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGN 364 (580)
Q Consensus 291 ~~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 364 (580)
+.....++.++++.+.+++..|. .+..+++|+.|++++|.+++ +| .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence 45567888889999998888776 89999999999999999975 55 3332
Q ss_pred ccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccC
Q 036717 365 VDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYN 444 (580)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 444 (580)
+++|+.|++++|.++ .+|..+..+++|++|++++|
T Consensus 69 --------------------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 69 --------------------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYN 103 (198)
T ss_dssp --------------------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEE
T ss_pred --------------------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCC
Confidence 688999999999999 67888888999999999999
Q ss_pred cceecccccccCcccCCEEECCCCcccccCc-hhhcCCCCCCEEeccCCcccccCCC
Q 036717 445 FLSGSIPESFSNLKMIESLDLSHNKLNGQIP-PQLTELHSLSKFDVSYNNLSGPIPD 500 (580)
Q Consensus 445 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~ 500 (580)
.+++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 104 ~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 104 QIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp ECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred cCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 9996 45 68899999999999999996443 5789999999999999999998775
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=7.6e-13 Score=116.56 Aligned_cols=106 Identities=20% Similarity=0.281 Sum_probs=71.3
Q ss_pred CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717 55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD 134 (580)
Q Consensus 55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 134 (580)
..+.+++++|.++ .+|..+ .++|++|++++|++++..|..|..+++|++|+|++|+++ .++...|..+++|++|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEE
Confidence 3466777777776 566554 367777777777777666777777777777777777776 55555556666677777
Q ss_pred cccccCCCcCCccccCCCCCCEEeccCcccc
Q 036717 135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS 165 (580)
Q Consensus 135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (580)
|++|++++..+..|..+++|++|++++|.+.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7666666555455666666666666666554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1e-12 Score=116.07 Aligned_cols=104 Identities=17% Similarity=0.268 Sum_probs=71.5
Q ss_pred cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717 57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS 136 (580)
Q Consensus 57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 136 (580)
+.+++++|.++ .+|..+ .++|++|++++|++++..|..|+++++|++|+|++|+++ .+|...+..+++|++|+|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 56777777776 677654 367777888888777776777777777777777777777 5666555666777777777
Q ss_pred cccCCCcCCccccCCCCCCEEeccCcccc
Q 036717 137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFS 165 (580)
Q Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (580)
+|++++..+..|..+++|++|++++|.+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 77666544444666666666666666654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=3.1e-14 Score=142.00 Aligned_cols=136 Identities=17% Similarity=0.178 Sum_probs=66.9
Q ss_pred CCCCcEEEcccCcCccccchhhhcC-----CCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccc----
Q 036717 78 LQKLVYMNISKNSFEGNIPSSIAKM-----QGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNY---- 148 (580)
Q Consensus 78 l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---- 148 (580)
.++|+.|++++|.++......+... ++|++|+|++|.+++.....+...+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3566677777776664433333332 5666777766666543333333444556666666666653322222
Q ss_pred -cCCCCCCEEeccCcccccc----ccccccCCCCCCEEEcccCCCCCCC----chhhhcCCCCCEEEcccCcCC
Q 036717 149 -MNLTQLQLLYLDNNHFSGK----IKDGLLRSTELMVLDISNNRLSGHI----PSWMGNFSYLQILSMSKNLLE 213 (580)
Q Consensus 149 -~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~ 213 (580)
...++|++|++++|.+++. ++..+...++|++|+|++|.+.+.. +..+...++|++|++++|.++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 1345555555555555432 2222344455555555555544211 223333444444444444443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.1e-13 Score=138.01 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=98.1
Q ss_pred CCCccEEEccCCCCCccCChhHhh----cCCCCcEEEcccCcCccccchhhh-cCCCCCEEEcccCcCccccchHHH---
Q 036717 53 QHGLLSLDISKNSFTGELPQNMGI----VLQKLVYMNISKNSFEGNIPSSIA-KMQGLRFLDVSTNNFAGELSQSLV--- 124 (580)
Q Consensus 53 ~~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~--- 124 (580)
.+.|+.|++++|.++......+.. ..++|++|+|++|.++......+. .+++|++|+|++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 345666666666655322222111 124666666666666543222222 245666666666666532222211
Q ss_pred -hCCCCCcEEEcccccCCCc----CCccccCCCCCCEEeccCcccccc----ccccccCCCCCCEEEcccCCCCCC----
Q 036717 125 -TNCFSLIWLDLSNNNFDGQ----IFPNYMNLTQLQLLYLDNNHFSGK----IKDGLLRSTELMVLDISNNRLSGH---- 191 (580)
Q Consensus 125 -~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~---- 191 (580)
...++|++|+|++|.++.. ++..+..+++|++|++++|.+++. ++..+...++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2345666777776666532 223335566777777777776642 244455667777888887777642
Q ss_pred CchhhhcCCCCCEEEcccCcCCCcCchhccCC---C--CCcEEE--ccCCcCc
Q 036717 192 IPSWMGNFSYLQILSMSKNLLEGNIPVQFNDL---L--DLEILN--ISENNLS 237 (580)
Q Consensus 192 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~--~L~~L~--l~~n~l~ 237 (580)
++..+...++|++|++++|.++......+..+ . .++.+. +..+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23344556778888888887765444444332 1 155555 5555554
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=2.3e-12 Score=128.00 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=83.9
Q ss_pred cccccEEEccC-CcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEE
Q 036717 409 LEHMAGLDLSS-NELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF 487 (580)
Q Consensus 409 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 487 (580)
+.+|+.|+|++ |.+++..+..|+++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 57899999996 999988889999999999999999999999999999999999999999999987777787776 9999
Q ss_pred eccCCcccccCC
Q 036717 488 DVSYNNLSGPIP 499 (580)
Q Consensus 488 ~Ls~N~l~~~~p 499 (580)
+|++|++.|.|.
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 999999999876
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=1.9e-10 Score=115.63 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=62.1
Q ss_pred hhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCC
Q 036717 194 SWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSA 272 (580)
Q Consensus 194 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 272 (580)
..+..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++......+ .+.+|+.+.+..+ +......+|..|.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 33444455555555433 22233344555555555555443 333333333 4455555555432 33233444555555
Q ss_pred ccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEee
Q 036717 273 LETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS 327 (580)
Q Consensus 273 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 327 (580)
|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+.
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 555555555554444445555555555555433 333334455555555555553
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.24 E-value=1.3e-09 Score=109.39 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=27.4
Q ss_pred cccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEec
Q 036717 428 SEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDV 489 (580)
Q Consensus 428 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 489 (580)
.+|.++++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+-..+|.++++|+.+.+
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 34444444444444444444344444444444444444432 33333344444444444444
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.3e-11 Score=120.78 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=90.7
Q ss_pred cEEEccCC-cceeeCCcccccccCCCeEeccc-CcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEecc
Q 036717 413 AGLDLSSN-ELTGNIPSEIGDLQNIHGLNLSY-NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVS 490 (580)
Q Consensus 413 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 490 (580)
..++++++ +++ .+|. +..+++|+.|+|++ |.+++..+..|+++++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35789998 898 5788 99999999999996 99999888999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCcccCCcCccccCCCCCCCCC
Q 036717 491 YNNLSGPIPDKEQFSTFDESSYRGNLHLCGP 521 (580)
Q Consensus 491 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 521 (580)
+|+|++..+.......+....+.+|+..|.+
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 9999976554333233666667777776643
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=8.2e-10 Score=108.98 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=34.3
Q ss_pred CCCCcEEEeeCCcCcccCChhcc---CCCCccEEeCCCCcCcccC----chhhccCcCcceeeccccccccc
Q 036717 246 LSSVEHLYLQNNALGGSIPNTFF---RGSALETLDLRDNNFSGRI----PHQINEHSNLRALLLRANYLQGP 310 (580)
Q Consensus 246 ~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~ 310 (580)
+++|++|++.+|.+.+..+..+. .+++|++|+++.|.+++.. +..+..+++|+.|+++.|.++..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 55666666666665533222222 3456666666666665432 22223445666666666655543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=1.7e-09 Score=106.71 Aligned_cols=64 Identities=13% Similarity=0.220 Sum_probs=29.0
Q ss_pred cccccEEEccCCcceeeCCcccc---cccCCCeEecccCcceec----ccccccCcccCCEEECCCCcccc
Q 036717 409 LEHMAGLDLSSNELTGNIPSEIG---DLQNIHGLNLSYNFLSGS----IPESFSNLKMIESLDLSHNKLNG 472 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 472 (580)
+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 44555555555555432222221 344555555555555432 22223344555555555555443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=1.5e-07 Score=87.83 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=34.1
Q ss_pred ccccCCCeEecccCccee--cccccccCcccCCEEECCCCcccccCchhhcCCC--CCCEEeccCCcccccCC
Q 036717 431 GDLQNIHGLNLSYNFLSG--SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH--SLSKFDVSYNNLSGPIP 499 (580)
Q Consensus 431 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p 499 (580)
.++++|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|++. +.+..+. +|++|+|++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345555555555555554 2334444555555555555555543 2222222 55555555555555444
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=8.6e-08 Score=85.19 Aligned_cols=17 Identities=12% Similarity=0.000 Sum_probs=9.3
Q ss_pred ccCCCCCCEEEeeCCee
Q 036717 315 LCRLRKLGIMDLSHNRL 331 (580)
Q Consensus 315 ~~~l~~L~~L~l~~n~l 331 (580)
+...+.|+.|++++|.+
T Consensus 147 L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHCSSCCEEECCCSSH
T ss_pred HHhCCCcCEEeccCCCC
Confidence 33445566666666655
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=7.8e-08 Score=85.46 Aligned_cols=116 Identities=10% Similarity=0.122 Sum_probs=89.3
Q ss_pred chhhhcCCCCCEEEcccC-cCCCc----CchhccCCCCCcEEEccCCcCccccCCcc-----CCCCCcEEEeeCCcCccc
Q 036717 193 PSWMGNFSYLQILSMSKN-LLEGN----IPVQFNDLLDLEILNISENNLSGSMISTL-----NLSSVEHLYLQNNALGGS 262 (580)
Q Consensus 193 ~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~l~~~ 262 (580)
...+...+.|++|++++| .+... +...+...+.|++|+|++|.+.......+ ..++|++|+|++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667889999999999 87642 34556778899999999999876443322 557899999999999854
Q ss_pred ----CChhccCCCCccEEeC--CCCcCccc----CchhhccCcCcceeeccccccc
Q 036717 263 ----IPNTFFRGSALETLDL--RDNNFSGR----IPHQINEHSNLRALLLRANYLQ 308 (580)
Q Consensus 263 ----~~~~~~~~~~L~~L~l--~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~ 308 (580)
+...+...++|++|++ ++|.++.. +...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3556677789999999 88998754 3345566789999999999876
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=9.2e-08 Score=89.32 Aligned_cols=78 Identities=27% Similarity=0.337 Sum_probs=65.5
Q ss_pred cccccEEEccCCccee--eCCcccccccCCCeEecccCcceecccccccCcc--cCCEEECCCCcccccCc-------hh
Q 036717 409 LEHMAGLDLSSNELTG--NIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLK--MIESLDLSHNKLNGQIP-------PQ 477 (580)
Q Consensus 409 l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p-------~~ 477 (580)
+++|+.|+|++|++++ .+|..+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|.+.+.+| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 7899999999999997 5567788999999999999999965 3344444 99999999999997665 34
Q ss_pred hcCCCCCCEEe
Q 036717 478 LTELHSLSKFD 488 (580)
Q Consensus 478 l~~l~~L~~L~ 488 (580)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 77889999886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=4.3e-07 Score=78.53 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=70.6
Q ss_pred ccccEEEccCCcceeeCCcccccccCCCeEecccCc-ceecccccccCc----ccCCEEECCCCc-ccccCchhhcCCCC
Q 036717 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNF-LSGSIPESFSNL----KMIESLDLSHNK-LNGQIPPQLTELHS 483 (580)
Q Consensus 410 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 483 (580)
..|+.||+++|.+++.--..+..+++|+.|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999998777778999999999999995 776555556664 479999999985 88766667889999
Q ss_pred CCEEeccCCc
Q 036717 484 LSKFDVSYNN 493 (580)
Q Consensus 484 L~~L~Ls~N~ 493 (580)
|++|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=1.5e-06 Score=75.16 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=38.8
Q ss_pred CCcEEEcccCcCccccchhhhcCCCCCEEEcccCc-CccccchHHHhCC----CCCcEEEccccc-CCCcCCccccCCCC
Q 036717 80 KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN-FAGELSQSLVTNC----FSLIWLDLSNNN-FDGQIFPNYMNLTQ 153 (580)
Q Consensus 80 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~ 153 (580)
+|+.||++++.++...-..+..+++|++|+|++|. +++..-..+ ..+ ++|++|++++|. +++.....+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45566666655554444455556666666666653 432222221 221 245555555543 44333333444445
Q ss_pred CCEEeccCc
Q 036717 154 LQLLYLDNN 162 (580)
Q Consensus 154 L~~L~l~~n 162 (580)
|++|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555444
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.70 E-value=4.7e-05 Score=62.68 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=48.4
Q ss_pred CeEecccCcce-ecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCC
Q 036717 437 HGLNLSYNFLS-GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP 499 (580)
Q Consensus 437 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 499 (580)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|++.|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 36777777776 24554433 468999999999998778889999999999999999998875
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=0.00011 Score=64.80 Aligned_cols=86 Identities=9% Similarity=0.120 Sum_probs=42.8
Q ss_pred CCccEEEccCCCCCccCChh---HhhcCCCCcEEEcccCcCcccc----chhhhcCCCCCEEEcccC---cCccccc---
Q 036717 54 HGLLSLDISKNSFTGELPQN---MGIVLQKLVYMNISKNSFEGNI----PSSIAKMQGLRFLDVSTN---NFAGELS--- 120 (580)
Q Consensus 54 ~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n---~l~~~~~--- 120 (580)
..|+.|+|++|.+.+..... +...-+.|++|+|++|.|.... .+++..-+.|++|+|+++ .+.....
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 45666666666655322111 1123456677777777665332 233444556777777654 2222111
Q ss_pred hHHHhCCCCCcEEEccccc
Q 036717 121 QSLVTNCFSLIWLDLSNNN 139 (580)
Q Consensus 121 ~~~~~~l~~L~~L~L~~n~ 139 (580)
...+..-+.|+.|+++.|.
T Consensus 150 a~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhCCCcCeEeccCCC
Confidence 1122344567777776554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.27 E-value=0.00024 Score=62.46 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=8.6
Q ss_pred ccCCCCCCEEEeeCCee
Q 036717 315 LCRLRKLGIMDLSHNRL 331 (580)
Q Consensus 315 ~~~l~~L~~L~l~~n~l 331 (580)
+..-+.|+.|+++.|.+
T Consensus 153 L~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 153 IEENESLLRVGISFASM 169 (197)
T ss_dssp HHHCSSCCEEECCCCCH
T ss_pred HHhCCCcCeEeccCCCc
Confidence 34445555555554443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.97 E-value=0.0009 Score=54.91 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=47.4
Q ss_pred cEEEccCCcce-eeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCccc
Q 036717 413 AGLDLSSNELT-GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN 471 (580)
Q Consensus 413 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 471 (580)
..++.++++++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46889999987 35665443 47999999999999877888999999999999999875
No 165
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=75.35 E-value=4.1 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCC
Q 036717 554 WSFVASYVTLMLGLLAILWINPYWRRL 580 (580)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~wr~~ 580 (580)
.+++++.++++.+++.+.|+. |||+
T Consensus 14 AGiVvG~v~gv~li~~l~~~~--~rrr 38 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVFR--SRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HCCC
T ss_pred eeeehHHHHHHHHHHHHHHHH--eecC
Confidence 445555554444444433332 5553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.05 E-value=6.1 Score=29.98 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=17.9
Q ss_pred ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717 94 NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS 136 (580)
Q Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 136 (580)
+...+|.++.+|+.+.+..+ ++ .|....|.+|.+|+.+.+.
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEEC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEc
Confidence 33344444555554444332 22 3444444444444444443
No 167
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=66.96 E-value=8.5 Score=23.97 Aligned_cols=7 Identities=0% Similarity=0.221 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 036717 555 SFVASYV 561 (580)
Q Consensus 555 ~~~~~~~ 561 (580)
+++.+++
T Consensus 15 gVVgGv~ 21 (44)
T 2l2t_A 15 GVIGGLF 21 (44)
T ss_dssp HHHHHHH
T ss_pred eehHHHH
Confidence 3333333
No 168
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=63.80 E-value=5.8 Score=22.75 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 036717 552 FYWSFVASYVTLMLGLLAILWINPYW 577 (580)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~w 577 (580)
..+.++++.++++.++...+.|++..
T Consensus 8 malt~i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCceeEEEccc
Confidence 34456666666666666666654433
No 169
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=53.62 E-value=19 Score=22.43 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.5
Q ss_pred HHHHHHhhccc
Q 036717 566 GLLAILWINPY 576 (580)
Q Consensus 566 ~~~~~~~~~~~ 576 (580)
++..++|.+++
T Consensus 28 ~l~~~~~~RRR 38 (44)
T 2jwa_A 28 GVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhheehh
Confidence 33334444433
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.10 E-value=36 Score=25.57 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=25.2
Q ss_pred ceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCC
Q 036717 422 LTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467 (580)
Q Consensus 422 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 467 (580)
++..-..+|.++++|+.+.+-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34344455666666666666543 3334455666666666666654
No 171
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=42.51 E-value=30 Score=20.91 Aligned_cols=9 Identities=11% Similarity=-0.068 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 036717 554 WSFVASYVT 562 (580)
Q Consensus 554 ~~~~~~~~~ 562 (580)
.++++++++
T Consensus 17 ~~vv~Gv~l 25 (41)
T 2k9y_A 17 GGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHH
T ss_pred eehhHHHHH
Confidence 344444444
No 172
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=38.53 E-value=32 Score=18.50 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 036717 556 FVASYVTLMLGLLAILWINP 575 (580)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~ 575 (580)
+.++.+.++..++..+|..+
T Consensus 8 viaglvalltflafgfwlfk 27 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 173
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=34.97 E-value=79 Score=19.70 Aligned_cols=28 Identities=11% Similarity=0.364 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 036717 550 VAFYWSFVASYVTLMLGLLAILWINPYW 577 (580)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w 577 (580)
...+..-..+|++++++.-++.|..++|
T Consensus 17 H~~~~~~~~~F~~iA~vAH~L~~~wrPW 44 (45)
T 1lgh_B 17 HDQFKTTFSAFIILAAVAHVLVWVWKPW 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444444555666666667777877777
No 174
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=32.74 E-value=81 Score=19.22 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc
Q 036717 551 AFYWSFVASYVTLMLGLLAILWINPYWR 578 (580)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~wr 578 (580)
..+..-..+|++++++.-++.|..++|-
T Consensus 13 ~~~~~~~~~F~~iA~vAH~l~w~wrPWl 40 (41)
T 1nkz_B 13 KYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444445556666666777788877773
No 175
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=20.77 E-value=75 Score=20.13 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 036717 552 FYWSFVASYVTLMLGLLAILWINPYW 577 (580)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~w 577 (580)
.+..-..+|++++++.-++.|..++|
T Consensus 22 ~~~~~~~~F~~iA~vAH~l~w~wrPW 47 (48)
T 1dx7_A 22 VYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444455555666667777887777
No 176
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=20.09 E-value=1.1e+02 Score=20.08 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Q 036717 552 FYWSFVASYVTLMLGLLAILWINPYWR 578 (580)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~wr 578 (580)
.++.-..+|++++++.-++.|..++|-
T Consensus 22 ~f~~~~~~F~~iAvvAH~L~~~wrPWl 48 (55)
T 1wrg_A 22 IFTSSILVFFGVAAFAHLLVWIWRPWV 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 344344455555566667778877775
Done!