BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036719
         (601 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NRX|A Chain A, Insights Into Anti-Parallel Microtubule Crosslinking By
           Prc1, A Conserved Non-Motor Microtubule Binding Protein
 pdb|3NRX|B Chain B, Insights Into Anti-Parallel Microtubule Crosslinking By
           Prc1, A Conserved Non-Motor Microtubule Binding Protein
          Length = 130

 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 19/130 (14%)

Query: 386 KDIMDRIDRWLYACEEEKW-----LEEYNQDDNRYNAGRGAHINLKRAERARVTVSK-IP 439
           K++ + + +W     EE W      E    D NR+   RG   NL + E+ R  + K +P
Sbjct: 13  KELFEGVQKW-----EETWRLFLEFERKASDPNRF-TNRGG--NLLKEEKQRAKLQKMLP 64

Query: 440 AIVDNLINRTLAWEEEKKIFFLYDGVRLVS-ILDDYKLTRVQREEEKKRYRDQKKMQDLL 498
            + + L  R   WE+E    F+ +G + +  + + +++ R+    EK+R + ++++++  
Sbjct: 65  KLEEELKARIELWEQEHSKAFMVNGQKFMEYVAEQWEMHRL----EKERAKQERQLKNKK 120

Query: 499 LTEKEAIYGS 508
            TE E +YGS
Sbjct: 121 QTETEMLYGS 130


>pdb|3NRY|A Chain A, Insights Into Anti-Parallel Microtubule Crosslinking By
           Prc1, A Conserved Microtubule Binding Protein
          Length = 130

 Score = 38.1 bits (87), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 19/130 (14%)

Query: 386 KDIMDRIDRWLYACEEEKW-----LEEYNQDDNRYNAGRGAHINLKRAERARVTVSK-IP 439
           K++ + + +W     EE W      E    D NR+   RG   NL + E+ R  + K +P
Sbjct: 13  KELFEGVQKW-----EETWRLFLEFERKASDPNRF-TNRGG--NLLKEEKQRAKLQKXLP 64

Query: 440 AIVDNLINRTLAWEEEKKIFFLYDGVRLVS-ILDDYKLTRVQREEEKKRYRDQKKMQDLL 498
            + + L  R   WE+E    F  +G +    + + ++  R+    EK+R + ++++++  
Sbjct: 65  KLEEELKARIELWEQEHSKAFXVNGQKFXEYVAEQWEXHRL----EKERAKQERQLKNKK 120

Query: 499 LTEKEAIYGS 508
            TE E +YGS
Sbjct: 121 QTETEXLYGS 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,917,067
Number of Sequences: 62578
Number of extensions: 615837
Number of successful extensions: 1414
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1414
Number of HSP's gapped (non-prelim): 12
length of query: 601
length of database: 14,973,337
effective HSP length: 104
effective length of query: 497
effective length of database: 8,465,225
effective search space: 4207216825
effective search space used: 4207216825
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)