Query 036719
Match_columns 601
No_of_seqs 253 out of 499
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4302 Microtubule-associated 100.0 1E-111 3E-116 928.8 61.4 574 10-599 9-586 (660)
2 PF03999 MAP65_ASE1: Microtubu 100.0 8E-80 1.7E-84 697.5 14.5 449 38-514 2-469 (619)
3 PF03999 MAP65_ASE1: Microtubu 99.9 2.1E-24 4.5E-29 245.5 12.0 404 15-501 33-460 (619)
4 KOG4302 Microtubule-associated 99.9 7.8E-20 1.7E-24 203.1 46.2 349 76-455 21-386 (660)
5 TIGR00606 rad50 rad50. This fa 93.8 20 0.00044 45.4 26.8 208 165-399 527-742 (1311)
6 TIGR03185 DNA_S_dndD DNA sulfu 93.6 19 0.0004 42.1 33.6 242 101-392 205-454 (650)
7 PF15070 GOLGA2L5: Putative go 93.0 22 0.00047 41.3 24.5 126 36-187 11-143 (617)
8 TIGR03185 DNA_S_dndD DNA sulfu 92.7 24 0.00053 41.2 29.5 42 301-342 479-520 (650)
9 PF12128 DUF3584: Protein of u 92.4 38 0.00083 42.6 31.0 50 226-275 765-817 (1201)
10 KOG0933 Structural maintenance 91.4 39 0.00085 40.7 24.2 180 108-320 797-976 (1174)
11 PHA02562 46 endonuclease subun 90.4 37 0.0008 38.6 26.3 94 36-142 150-243 (562)
12 KOG4674 Uncharacterized conser 89.3 79 0.0017 40.9 32.0 265 19-340 543-821 (1822)
13 TIGR02169 SMC_prok_A chromosom 89.2 66 0.0014 39.8 25.9 25 297-321 971-995 (1164)
14 KOG0250 DNA repair protein RAD 89.0 51 0.0011 40.2 21.3 40 160-199 331-370 (1074)
15 KOG0996 Structural maintenance 87.5 82 0.0018 38.8 33.5 98 230-337 933-1032(1293)
16 PHA02562 46 endonuclease subun 85.7 20 0.00044 40.7 15.6 19 232-250 386-404 (562)
17 TIGR02168 SMC_prok_B chromosom 85.4 1E+02 0.0022 38.0 27.2 12 304-315 910-921 (1179)
18 KOG0161 Myosin class II heavy 85.2 1.4E+02 0.003 39.3 29.1 46 42-88 1043-1088(1930)
19 KOG1029 Endocytic adaptor prot 85.1 28 0.00061 40.7 15.6 68 60-142 435-502 (1118)
20 PRK02224 chromosome segregatio 83.5 1.1E+02 0.0024 36.9 33.3 32 364-395 410-441 (880)
21 TIGR00634 recN DNA repair prot 82.4 45 0.00097 38.3 16.5 123 53-206 264-394 (563)
22 PF08317 Spc7: Spc7 kinetochor 82.4 11 0.00023 40.3 10.7 125 55-209 170-298 (325)
23 KOG4674 Uncharacterized conser 80.4 2E+02 0.0043 37.6 29.7 283 61-392 797-1093(1822)
24 PF10239 DUF2465: Protein of u 80.4 52 0.0011 35.1 14.8 134 18-187 61-209 (318)
25 KOG0964 Structural maintenance 80.3 1.5E+02 0.0032 36.1 21.7 27 469-495 974-1000(1200)
26 PRK03918 chromosome segregatio 79.9 1.5E+02 0.0032 35.8 26.4 41 229-269 656-696 (880)
27 PRK11637 AmiB activator; Provi 78.9 1.1E+02 0.0024 33.8 21.6 42 102-143 44-85 (428)
28 KOG4643 Uncharacterized coiled 78.5 1.7E+02 0.0037 35.7 30.4 83 52-140 261-343 (1195)
29 KOG0250 DNA repair protein RAD 75.6 1.9E+02 0.0041 35.6 18.8 78 109-198 334-412 (1074)
30 PRK02224 chromosome segregatio 75.4 1.9E+02 0.0042 34.9 34.9 23 368-390 484-506 (880)
31 PRK04778 septation ring format 75.2 1.6E+02 0.0035 33.9 31.3 66 19-87 64-130 (569)
32 PF10498 IFT57: Intra-flagella 74.7 78 0.0017 34.3 14.4 78 52-140 217-294 (359)
33 PF06160 EzrA: Septation ring 74.6 1.7E+02 0.0036 33.7 25.7 68 17-87 58-126 (560)
34 PF08317 Spc7: Spc7 kinetochor 73.9 1.3E+02 0.0028 32.1 23.8 88 56-143 69-162 (325)
35 KOG0977 Nuclear envelope prote 73.3 1.8E+02 0.0038 33.4 27.6 183 48-262 49-231 (546)
36 PF03915 AIP3: Actin interacti 73.0 1.1E+02 0.0024 33.9 15.3 171 165-395 150-321 (424)
37 TIGR02169 SMC_prok_A chromosom 73.0 2.4E+02 0.0053 34.9 33.2 36 167-202 799-834 (1164)
38 PF10146 zf-C4H2: Zinc finger- 72.7 1.1E+02 0.0025 30.9 16.6 105 52-208 5-110 (230)
39 PF11995 DUF3490: Domain of un 72.2 72 0.0016 30.3 11.6 100 255-360 2-123 (161)
40 PF00038 Filament: Intermediat 71.9 1.3E+02 0.0029 31.3 26.0 36 365-406 261-296 (312)
41 PF12252 SidE: Dot/Icm substra 71.7 2.5E+02 0.0055 34.5 19.3 94 164-271 1177-1270(1439)
42 KOG3091 Nuclear pore complex, 69.9 98 0.0021 34.7 13.8 88 48-143 355-445 (508)
43 TIGR02168 SMC_prok_B chromosom 68.9 2.9E+02 0.0063 34.1 27.6 13 303-315 916-928 (1179)
44 KOG1029 Endocytic adaptor prot 68.5 2.6E+02 0.0055 33.3 23.5 30 117-146 435-464 (1118)
45 PF10174 Cast: RIM-binding pro 67.5 2.8E+02 0.006 33.3 38.9 224 18-279 27-271 (775)
46 COG1340 Uncharacterized archae 67.2 1.7E+02 0.0037 30.8 15.3 33 55-87 69-101 (294)
47 KOG0982 Centrosomal protein Nu 67.0 1.7E+02 0.0037 32.2 14.5 176 52-247 226-418 (502)
48 PF06705 SF-assemblin: SF-asse 66.6 1.5E+02 0.0033 30.0 17.0 74 117-204 166-239 (247)
49 PF14643 DUF4455: Domain of un 65.6 2.3E+02 0.0051 31.8 25.5 330 18-394 64-454 (473)
50 KOG0994 Extracellular matrix g 64.2 3.1E+02 0.0068 34.2 17.1 39 232-270 1591-1629(1758)
51 TIGR03007 pepcterm_ChnLen poly 63.5 2.5E+02 0.0054 31.4 23.0 145 55-204 204-348 (498)
52 KOG0612 Rho-associated, coiled 63.5 3.8E+02 0.0083 33.5 35.5 178 49-267 495-673 (1317)
53 COG1340 Uncharacterized archae 63.0 2E+02 0.0044 30.2 21.7 85 102-187 59-152 (294)
54 KOG0996 Structural maintenance 60.6 3.7E+02 0.0079 33.6 17.0 28 233-260 564-591 (1293)
55 PRK11637 AmiB activator; Provi 60.2 2.7E+02 0.0059 30.7 19.2 30 233-262 199-228 (428)
56 cd07627 BAR_Vps5p The Bin/Amph 60.1 1.9E+02 0.004 28.8 14.5 87 231-341 121-214 (216)
57 PF04949 Transcrip_act: Transc 58.7 94 0.002 29.3 9.4 63 51-121 87-149 (159)
58 PF08606 Prp19: Prp19/Pso4-lik 58.1 93 0.002 25.6 8.2 59 14-72 3-67 (70)
59 smart00787 Spc7 Spc7 kinetocho 57.9 2.6E+02 0.0056 29.7 23.3 88 56-143 64-157 (312)
60 PF11172 DUF2959: Protein of u 57.5 2.1E+02 0.0045 28.5 17.6 194 15-281 5-198 (201)
61 PF13543 KSR1-SAM: SAM like do 57.3 1.2E+02 0.0026 28.0 10.0 113 162-284 9-126 (129)
62 COG5185 HEC1 Protein involved 56.0 3.4E+02 0.0073 30.5 27.8 41 303-343 534-577 (622)
63 KOG0995 Centromere-associated 55.7 3.7E+02 0.008 30.9 27.6 43 232-274 453-495 (581)
64 PLN03188 kinesin-12 family pro 54.5 5.5E+02 0.012 32.5 20.3 100 235-340 970-1080(1320)
65 COG5293 Predicted ATPase [Gene 54.3 3.2E+02 0.007 30.5 14.0 57 21-85 300-358 (591)
66 COG1196 Smc Chromosome segrega 53.3 5.6E+02 0.012 32.3 33.8 64 370-449 946-1011(1163)
67 PF05557 MAD: Mitotic checkpoi 52.5 2.9E+02 0.0063 32.8 14.9 37 163-199 500-536 (722)
68 PF12325 TMF_TATA_bd: TATA ele 52.1 1.9E+02 0.0041 26.4 10.9 30 52-81 34-63 (120)
69 PF06705 SF-assemblin: SF-asse 52.1 2.7E+02 0.0059 28.2 19.3 83 164-265 151-234 (247)
70 PF02183 HALZ: Homeobox associ 52.0 75 0.0016 23.7 6.4 43 44-87 2-44 (45)
71 COG4026 Uncharacterized protei 51.8 1.9E+02 0.004 29.2 10.8 45 232-276 170-214 (290)
72 PF07058 Myosin_HC-like: Myosi 50.7 2.4E+02 0.0051 29.8 11.8 66 40-109 42-116 (351)
73 PF04065 Not3: Not1 N-terminal 50.6 2.9E+02 0.0063 28.1 13.6 68 381-455 76-144 (233)
74 COG4942 Membrane-bound metallo 49.7 4E+02 0.0087 29.5 18.5 94 105-207 38-131 (420)
75 PF15066 CAGE1: Cancer-associa 49.5 1.8E+02 0.0039 32.4 11.2 128 173-321 345-472 (527)
76 PF10498 IFT57: Intra-flagella 49.3 50 0.0011 35.8 7.2 92 109-204 217-311 (359)
77 PRK04778 septation ring format 48.8 4.7E+02 0.01 30.1 31.7 96 41-143 199-299 (569)
78 COG0497 RecN ATPase involved i 48.4 3.2E+02 0.0068 31.5 13.5 43 164-206 340-390 (557)
79 PRK09039 hypothetical protein; 48.1 3.8E+02 0.0083 28.8 18.1 105 64-202 48-152 (343)
80 KOG0964 Structural maintenance 48.0 6.1E+02 0.013 31.2 27.9 76 307-395 907-982 (1200)
81 KOG2150 CCR4-NOT transcription 47.8 4.9E+02 0.011 29.9 16.5 70 379-455 74-144 (575)
82 cd09237 V_ScBro1_like Protein- 46.2 4.1E+02 0.0088 28.6 33.8 299 49-394 7-330 (356)
83 KOG0018 Structural maintenance 45.7 6.8E+02 0.015 31.0 26.4 67 322-398 882-961 (1141)
84 PF09730 BicD: Microtubule-ass 43.8 4.5E+02 0.0097 31.3 14.2 148 255-437 547-696 (717)
85 cd09234 V_HD-PTP_like Protein- 43.7 4.3E+02 0.0094 28.2 28.3 110 79-197 110-219 (337)
86 KOG0933 Structural maintenance 43.4 7.2E+02 0.016 30.7 33.1 36 300-336 904-939 (1174)
87 KOG0161 Myosin class II heavy 43.2 9.6E+02 0.021 32.1 32.1 149 53-207 1194-1342(1930)
88 PF07106 TBPIP: Tat binding pr 42.2 49 0.0011 31.5 5.3 43 162-204 68-110 (169)
89 PF09789 DUF2353: Uncharacteri 42.2 4.6E+02 0.0099 28.0 24.3 187 52-263 27-227 (319)
90 cd09236 V_AnPalA_UmRIM20_like 41.9 4.7E+02 0.01 28.1 33.5 197 49-263 7-223 (353)
91 PRK10869 recombination and rep 41.5 6E+02 0.013 29.2 24.9 201 103-394 162-369 (553)
92 PF15254 CCDC14: Coiled-coil d 41.3 5.4E+02 0.012 30.8 13.9 163 14-194 336-515 (861)
93 PRK03918 chromosome segregatio 40.9 7.2E+02 0.016 29.9 35.3 26 362-387 448-473 (880)
94 PF11995 DUF3490: Domain of un 40.9 22 0.00048 33.6 2.6 24 327-350 3-26 (161)
95 PF09738 DUF2051: Double stran 39.8 4.8E+02 0.01 27.6 15.1 39 226-264 198-244 (302)
96 PRK04863 mukB cell division pr 39.7 9.9E+02 0.021 31.2 29.3 20 364-383 556-575 (1486)
97 PF11629 Mst1_SARAH: C termina 39.6 41 0.00089 25.6 3.3 25 369-393 22-47 (49)
98 PF05667 DUF812: Protein of un 39.6 6.6E+02 0.014 29.3 14.6 204 234-462 330-534 (594)
99 PF15070 GOLGA2L5: Putative go 36.8 7.5E+02 0.016 28.9 25.4 81 102-192 26-106 (617)
100 KOG2129 Uncharacterized conser 36.4 6.3E+02 0.014 28.0 15.3 46 232-283 179-224 (552)
101 PF07083 DUF1351: Protein of u 35.8 4.6E+02 0.0099 26.2 13.4 145 57-209 41-187 (215)
102 COG1579 Zn-ribbon protein, pos 35.1 5.1E+02 0.011 26.5 18.7 87 51-143 41-127 (239)
103 PF10147 CR6_interact: Growth 34.7 4.9E+02 0.011 26.2 13.2 51 424-474 119-187 (217)
104 smart00806 AIP3 Actin interact 34.6 6.8E+02 0.015 27.8 27.8 172 165-395 154-325 (426)
105 PF12252 SidE: Dot/Icm substra 34.0 1E+03 0.022 29.7 30.4 309 28-400 1002-1343(1439)
106 cd00890 Prefoldin Prefoldin is 33.7 3.2E+02 0.0069 24.2 9.1 38 231-268 86-123 (129)
107 COG3883 Uncharacterized protei 33.3 2.9E+02 0.0063 28.7 9.4 84 102-197 28-111 (265)
108 PF13870 DUF4201: Domain of un 33.1 4.4E+02 0.0096 25.2 18.8 77 110-204 4-80 (177)
109 PRK05771 V-type ATP synthase s 32.9 1.8E+02 0.0039 34.0 9.0 203 179-407 45-264 (646)
110 KOG4460 Nuclear pore complex, 32.4 8.2E+02 0.018 28.1 21.5 35 113-147 613-647 (741)
111 PF06248 Zw10: Centromere/kine 31.7 6E+02 0.013 29.3 13.0 50 444-497 343-394 (593)
112 TIGR02338 gimC_beta prefoldin, 31.7 3.1E+02 0.0068 24.1 8.4 34 232-265 74-107 (110)
113 PF13949 ALIX_LYPXL_bnd: ALIX 31.3 5.9E+02 0.013 26.1 26.9 126 63-194 44-169 (296)
114 PF08614 ATG16: Autophagy prot 31.2 4.1E+02 0.0089 25.9 10.0 85 101-204 70-154 (194)
115 PF15066 CAGE1: Cancer-associa 31.1 5.9E+02 0.013 28.6 11.7 145 48-198 337-503 (527)
116 PF11902 DUF3422: Protein of u 30.9 7.8E+02 0.017 27.4 14.6 102 35-146 184-285 (420)
117 TIGR03007 pepcterm_ChnLen poly 30.8 7.9E+02 0.017 27.4 27.8 140 112-265 204-343 (498)
118 PRK09039 hypothetical protein; 30.2 7.2E+02 0.016 26.7 19.8 134 100-246 111-252 (343)
119 smart00787 Spc7 Spc7 kinetocho 30.0 6.9E+02 0.015 26.5 20.7 22 226-247 265-286 (312)
120 cd07610 FCH_F-BAR The Extended 29.7 4.9E+02 0.011 24.7 12.0 36 236-271 87-122 (191)
121 COG2433 Uncharacterized conser 29.7 5.3E+02 0.011 29.9 11.3 98 101-207 418-515 (652)
122 COG4026 Uncharacterized protei 29.2 6.2E+02 0.013 25.7 11.1 92 47-142 76-172 (290)
123 PF04849 HAP1_N: HAP1 N-termin 29.1 7.2E+02 0.016 26.4 22.0 145 165-337 159-303 (306)
124 PF10212 TTKRSYEDQ: Predicted 28.1 5.2E+02 0.011 29.4 10.9 74 47-132 441-514 (518)
125 PF04111 APG6: Autophagy prote 27.9 3.8E+02 0.0081 28.5 9.6 36 52-87 47-82 (314)
126 KOG4398 Predicted coiled-coil 27.8 3E+02 0.0066 28.6 8.3 20 307-326 70-89 (359)
127 COG1579 Zn-ribbon protein, pos 27.4 6.9E+02 0.015 25.6 16.1 96 106-204 32-127 (239)
128 COG1196 Smc Chromosome segrega 27.2 1.4E+03 0.029 29.0 36.1 14 449-462 1080-1093(1163)
129 KOG0971 Microtubule-associated 27.0 1.2E+03 0.027 28.5 28.5 9 412-421 606-614 (1243)
130 TIGR02231 conserved hypothetic 25.9 6E+02 0.013 28.8 11.5 89 54-143 77-169 (525)
131 KOG3129 26S proteasome regulat 25.3 7.1E+02 0.015 25.1 10.2 71 129-199 31-102 (231)
132 KOG0977 Nuclear envelope prote 25.1 1.1E+03 0.024 27.2 23.9 232 56-339 43-275 (546)
133 KOG0809 SNARE protein TLG2/Syn 24.8 6.8E+02 0.015 26.4 10.3 28 62-89 104-131 (305)
134 cd09234 V_HD-PTP_like Protein- 24.5 8.7E+02 0.019 25.8 33.2 195 49-263 7-219 (337)
135 KOG2220 Predicted signal trans 24.3 1.3E+03 0.027 27.6 20.4 34 164-197 535-568 (714)
136 PF03359 GKAP: Guanylate-kinas 24.0 5.2E+02 0.011 28.0 9.9 77 228-321 200-276 (357)
137 PF09726 Macoilin: Transmembra 23.7 1.3E+03 0.028 27.5 24.6 31 241-271 631-661 (697)
138 cd00632 Prefoldin_beta Prefold 23.5 4.3E+02 0.0093 23.0 7.7 99 165-265 5-103 (105)
139 PF10211 Ax_dynein_light: Axon 23.0 7.1E+02 0.015 24.3 11.5 22 64-85 122-143 (189)
140 KOG4603 TBP-1 interacting prot 23.0 1.8E+02 0.0038 28.2 5.3 63 50-118 81-143 (201)
141 cd08915 V_Alix_like Protein-in 23.0 9.2E+02 0.02 25.5 30.1 257 32-338 55-340 (342)
142 cd07665 BAR_SNX1 The Bin/Amphi 23.0 8.1E+02 0.018 24.9 16.9 37 305-341 187-230 (234)
143 KOG4196 bZIP transcription fac 22.6 2.3E+02 0.0049 26.2 5.7 72 13-86 26-105 (135)
144 PF04912 Dynamitin: Dynamitin 22.2 1E+03 0.022 25.8 22.4 56 183-246 205-260 (388)
145 PF02994 Transposase_22: L1 tr 22.1 1.2E+02 0.0026 33.0 4.7 43 232-274 151-201 (370)
146 COG4942 Membrane-bound metallo 22.0 1.1E+03 0.024 26.2 20.8 182 38-263 36-220 (420)
147 KOG4657 Uncharacterized conser 21.6 4E+02 0.0087 27.0 7.6 33 56-88 80-112 (246)
148 TIGR02044 CueR Cu(I)-responsiv 21.6 4.9E+02 0.011 23.4 8.0 60 337-399 53-112 (127)
149 PF10168 Nup88: Nuclear pore c 21.6 1.4E+03 0.031 27.2 25.0 36 226-261 679-714 (717)
150 PF05557 MAD: Mitotic checkpoi 21.5 1.4E+03 0.03 27.1 15.8 139 51-205 506-646 (722)
151 KOG2398 Predicted proline-seri 21.0 1.4E+03 0.03 26.8 15.4 47 229-275 6-58 (611)
152 PF10267 Tmemb_cc2: Predicted 20.8 1.1E+03 0.025 25.8 12.0 58 305-379 261-318 (395)
153 PF13093 FTA4: Kinetochore com 20.6 8.6E+02 0.019 24.3 10.2 71 362-438 135-210 (213)
154 TIGR00606 rad50 rad50. This fa 20.5 1.9E+03 0.04 28.2 41.2 45 37-83 170-214 (1311)
155 KOG4593 Mitotic checkpoint pro 20.4 1.5E+03 0.032 26.9 22.2 240 55-341 384-638 (716)
156 TIGR01558 sm_term_P27 phage te 20.3 3.7E+02 0.008 23.8 6.7 27 65-91 69-95 (116)
No 1
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=1.4e-111 Score=928.84 Aligned_cols=574 Identities=48% Similarity=0.717 Sum_probs=523.7
Q ss_pred cccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 036719 10 SVRTSTSCNALLRELQQIWSDIGESEAEKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELN 89 (601)
Q Consensus 10 ~~~~~~~c~~~l~eL~~IWdEIG~~e~eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~ 89 (601)
+....+||++++.+|+.|||+||+++++|++++..|++||+++|+++|+++...+++|+++|+.++++++.||++||+++
T Consensus 9 ~~~~~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~ 88 (660)
T KOG4302|consen 9 SLQIEATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPS 88 (660)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHH
Q 036719 90 IHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRIT 169 (601)
Q Consensus 90 ~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~ 169 (601)
+.. ..+++..+||++++..+.+.++.|+++|++|+++|.+++.||+.||.+|||. +... .....|+.|||+++|+
T Consensus 89 ~~~-~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~-~~~~---~~~~~D~~dlsl~kLe 163 (660)
T KOG4302|consen 89 IIG-EISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP-EDLP---SFLIADESDLSLEKLE 163 (660)
T ss_pred ccc-ccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccCC---cccccCcccccHHHHH
Confidence 762 1256788899999999999999999999999999999999999999999998 2211 1345578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 036719 170 ECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERK 249 (601)
Q Consensus 170 ~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~ 249 (601)
+|+.+|.+|++||..|+++|.+++.+|+.||.+||++|..+|+++||+|.+..++++++||++||++|..++..|+++|.
T Consensus 164 elr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~ 243 (660)
T KOG4302|consen 164 ELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKK 243 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 250 IRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELVLKK 329 (601)
Q Consensus 250 ~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~k~ 329 (601)
+|.+++++|+.+|.+|||+|++|++||..|.+++ ++|++.+++||.++|.+++.||.||++||+++||+||+++
T Consensus 244 qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~ 317 (660)
T KOG4302|consen 244 QRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVT------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKK 317 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHcccc------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999985 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHc
Q 036719 330 RSELEEICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDRWLYACEEEKWLEEYN 409 (601)
Q Consensus 330 r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~e~~~LE~~~ 409 (601)
|.||++||+.+||+++....+.++..++++|.++..++|+.++.+|.++|+++.+||+|+++|++|.++|+++.||++|+
T Consensus 318 r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~n 397 (660)
T KOG4302|consen 318 RSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEYN 397 (660)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccc
Confidence 99999999999999964445556777789999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCccccchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHcCCceEECCccHHHHHHHHHHHHHhhHHHHHHHH
Q 036719 410 QDDNRYNAGRGAHINLKRAERARVTVSKIPAIVDNLINRTLAWEEEKKIFFLYDGVRLVSILDDYKLTRVQREEEKKRYR 489 (601)
Q Consensus 410 ~D~~R~~~~RG~h~~LlreEK~Rk~i~KlPkl~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~lee~~~~r~eKE~ek~r~R 489 (601)
+|.|||+++||||++|+||||+|++|+|||+|++.|+.++.+||.++|+||+|||++|++|+++|..||++||++|+|+|
T Consensus 398 ~D~nR~~~~Rg~h~lLkreekar~~vsKlP~~~~~L~~k~~~wE~e~~~~FL~~g~~ll~m~~e~~~~r~~ke~~k~r~r 477 (660)
T KOG4302|consen 398 RDSNRYNAGRGAHLLLKREEKARKLVSKLPKMVEALTAKVTAWEEEKGRPFLVDGVPLLEMLEEYEEHRQEKEQEKARQR 477 (660)
T ss_pred chhhhHhccccchhHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCCceeecCccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHhhhhhhccCCCCCCCCCCCccCCCCCCCC--CCCCCCCCCCCccCCCCCCCCCCCCCcccccCcccccccc
Q 036719 490 DQKKMQDLLLTEKEAIYGSKPSPRKSNSFRKPNGCRAN--GNGSMTPTPRRYSIGSGTPELLTPRSYSSRQNGHFREMRR 567 (601)
Q Consensus 490 ~~kk~~~~~~~e~e~~~Gs~ps~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (601)
++||.++|+.++++..|||+|||.+|+|.||..|+++| ++.+++|+.|++|.|.......+... .. + -+..+.
T Consensus 478 d~kk~s~q~~~~~~~~~~sk~sp~~p~s~rk~~~~~t~~~~~~~~~ps~~~~s~~~~~~s~~~~~~-~~--s--~r~~~~ 552 (660)
T KOG4302|consen 478 DQKKTSGQLKPEQEGRYGSKPSPSKPNSPRKNRGRSTPPNGSLSKTPSKRPLSGGNSAASTQNRTT-PL--S--PRRLRA 552 (660)
T ss_pred cccccccccCccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCccCcCCCCCCCCCcccCCC-CC--C--cccccC
Confidence 99999999999999999999999999999999998885 44788999888887665432111101 10 1 133344
Q ss_pred ccCCCCcccccccCccccc--cccccCCCCCCCC
Q 036719 568 LSTAPLNFVAISKEDTMSS--YTSVCGSEPGSPP 599 (601)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 599 (601)
.++.|.||++..+.++.++ ++.++++.|.+|+
T Consensus 553 ~st~p~n~~~~~~~~~l~s~~~~~~~~~~~~~~~ 586 (660)
T KOG4302|consen 553 SSTTPANKVARQKIESLNSNNSSPASSSLSTSQT 586 (660)
T ss_pred CCCCCchhhhcccccccccCCCCCccCCCCCCCC
Confidence 5578999999999988864 3335666666553
No 2
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=100.00 E-value=8e-80 Score=697.52 Aligned_cols=449 Identities=37% Similarity=0.537 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CCCCC----CccccCCCCc
Q 036719 38 KDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGE-----------LNIHS----PIQTEKRSTS 102 (601)
Q Consensus 38 R~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~-----------~~~~~----~~~~~~~~~t 102 (601)
++.||..++.+|+++|..+|++++..+++|++.|+++++|++.|++++|. .++.. .......+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 81 (619)
T PF03999_consen 2 CDLMVVYLEIECLNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMP 81 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhccccc
Confidence 46789999999999999999999999999999999999999999555554 33220 0012235679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCc-HHHHHHHHHHHHHHHHH
Q 036719 103 LKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLS-LRRITECQTHLRTLQKE 181 (601)
Q Consensus 103 L~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS-~~~L~~l~~~L~~Lq~E 181 (601)
|++++..|.++++.|++++.+|+++|.+++.+++.||.+||..+..+. ...++..+++ .++|+.|+.+|+.|++|
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~----~~~~~~~~l~S~~~l~~l~~~l~~L~~e 157 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLN----PFDIDESDLPSLEELEELRQHLQRLQEE 157 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCc----cccCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987654321 2334555655 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcc-ccccccCCCccCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 182 KSDRLNRVLEYVNEVHSICGVLGLDFG-QTVSDVHPSLHGT-AMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIV 259 (601)
Q Consensus 182 K~~R~~kv~~l~~~I~~L~~~Lg~d~~-~~v~ev~~sl~~~-~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~ 259 (601)
|+.|+++|.+++..|+.||.+||++|. ... ...+... .++..++||+++|++|...++.|+++|.+|..++++|+
T Consensus 158 ~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~---e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~ 234 (619)
T PF03999_consen 158 KERRLEEVRELREEIISLMEELGIDPERTSF---EKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELR 234 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccc---hhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 332 2222221 34568999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 260 VSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELVLKKRSELEEICKM 339 (601)
Q Consensus 260 ~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~k~r~eLeelWd~ 339 (601)
.+|..||++|++|++||+.|... +++||.++|+++++||+||++||+++|++||.++|.+|++|||+
T Consensus 235 ~~i~~LW~~L~~~~ee~~~F~~~-------------~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~ 301 (619)
T PF03999_consen 235 EKIEELWNRLDVPEEEREAFLEE-------------NSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDK 301 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHhhc-------------cCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999654 46789999999999999999999999999999999999999999
Q ss_pred cCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHcCCccccccCC
Q 036719 340 THIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDRWLYACEEEKWLEEYNQDDNRYNAGR 419 (601)
Q Consensus 340 ~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~e~~~LE~~~~D~~R~~~~R 419 (601)
|||+++++.+ | .++++ +.++++||+.||.||++|+++|+++++||++|++|.++|+++.|||+|++|||||+ ||
T Consensus 302 ~~~s~eer~~---F-~~~~~-d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~-~R 375 (619)
T PF03999_consen 302 CHYSEEERQA---F-TPFYI-DSYTEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLN-NR 375 (619)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG----
T ss_pred hCCCHHHHHH---H-HHHhc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhc-cc
Confidence 9999988644 3 33333 35889999999999999999999999999999999999999999999999999999 99
Q ss_pred CccccchHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHcCCceEECCccHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHH
Q 036719 420 GAHINLKRAERARVTVSK-IPAIVDNLINRTLAWEEEKKIFFLYDGVRLVSILDDYKLTRVQREEEKKRYRDQKKMQDLL 498 (601)
Q Consensus 420 G~h~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~lee~~~~r~eKE~ek~r~R~~kk~~~~~ 498 (601)
||| ||+|||+|++|+| ||+|++.|+.+|.+||.++|+||+|||++|+++|++|......++++|.+.+++++.+.+.
T Consensus 376 Gg~--LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~e~g~pFlv~G~~~le~l~e~~~~~~~~~~~k~~~~~~k~~~~~~ 453 (619)
T PF03999_consen 376 GGH--LLKEEKERKRIQKKLPKLEEELKKKLEEWEEEHGKPFLVDGERYLEYLEEYEEQWERKREEKERSKQQKKLQNQK 453 (619)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--EETTEEHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEcCccHHHHHHHHHHHHHhhhhhhccccccCCCCCCC
Confidence 995 8999999999997 9999999999999999999999999999999999877666667777777778888888888
Q ss_pred hhhhhhccCCCCCCCC
Q 036719 499 LTEKEAIYGSKPSPRK 514 (601)
Q Consensus 499 ~~e~e~~~Gs~ps~~~ 514 (601)
.++++++||++|+|.+
T Consensus 454 ~~~~~~~~~s~~s~~~ 469 (619)
T PF03999_consen 454 QTEQEMPYGSKPSPAP 469 (619)
T ss_dssp HHHHHHHC--------
T ss_pred ccccCCCCCCccccCC
Confidence 9999999999877543
No 3
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=99.91 E-value=2.1e-24 Score=245.52 Aligned_cols=404 Identities=19% Similarity=0.259 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHH-------------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 15 TSCNALLRELQQIWSDIGESEAEKDRI-------------LMELE-----RECLEVYRRKVEEAANAKARLHQTVAAKEA 76 (601)
Q Consensus 15 ~~c~~~l~eL~~IWdEIG~~e~eR~~~-------------l~~le-----~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~ 76 (601)
.....+-.++..|+.++|+..+.--.. +.+.. .+++..++..+++....+....++|..+..
T Consensus 33 ~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~ 112 (619)
T PF03999_consen 33 QSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERMQEFKELQE 112 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888887877754421111 11222 235555788999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCC-ccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CCc-ccc
Q 036719 77 ELATLMAALGELNIHSP-IQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDH-LSN-SLI 153 (601)
Q Consensus 77 El~~L~~eLg~~~~~~~-~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~-~~~-e~l 153 (601)
++..||..||..+.... ...+..++|-.+++..+..+++.|++++..|+.+|..+..+|..+|.+|+..+. ... ..+
T Consensus 113 ~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l 192 (619)
T PF03999_consen 113 QLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDL 192 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhc
Confidence 99999999998654310 113344555558999999999999999999999999999999999999999885 211 111
Q ss_pred cc--cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCH
Q 036719 154 NS--LSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISN 231 (601)
Q Consensus 154 ~~--~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~ 231 (601)
.. ......+||.+.|+.|+..+..|+.+|..|..++..+...|..||+.|+++.+.. ..|. ..+.++|.
T Consensus 193 ~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~-----~~F~----~~~~~ls~ 263 (619)
T PF03999_consen 193 LSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEER-----EAFL----EENSGLSL 263 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-----HHHh----hccCcchH
Confidence 11 1123458999999999999999999999999999999999999999999875432 1121 12458899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHH
Q 036719 232 STLEGLEHAIVKLKAERKIRIQKLKD-IVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTE 310 (601)
Q Consensus 232 ~~L~~L~~~~~~L~e~K~~R~~kl~~-L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~E 310 (601)
++|+.|...+++|++.|.+++..+-. .+..|.+||+.|.+++++|..|..++. .+++.++++.++.|
T Consensus 264 ~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~------------d~~~E~lL~~hE~E 331 (619)
T PF03999_consen 264 DTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYI------------DSYTEELLELHEEE 331 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhc------------ccchHHHHHHHHHH
Confidence 99999999999999999999999854 999999999999999999999998864 45678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 036719 311 VERLTKLKATRMKELVLKKRSELEEICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMD 390 (601)
Q Consensus 311 v~RLe~lK~~~mk~lI~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~ 390 (601)
|.||+.....+ +. |+++-.++..+|..+..-++......+|. + -...||..-+..-.-.+.....-+.|..
T Consensus 332 i~~Lk~~~~~~-k~-Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~----~---RGg~LLkEEk~rk~i~k~lPkle~~L~~ 402 (619)
T PF03999_consen 332 IERLKEEYESR-KP-ILELVEKWESLWEEMEELEESSKDPSRLN----N---RGGHLLKEEKERKRIQKKLPKLEEELKK 402 (619)
T ss_dssp ---HHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHH-CCGG-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHhcChhhhc----c---cccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999997 54 67888899999998755422111111222 1 1123666666655666777888888888
Q ss_pred HHHHHHHHhHHHHHHHHHcCCccccccCCCccccchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHcCCceEECCccHHHH
Q 036719 391 RIDRWLYACEEEKWLEEYNQDDNRYNAGRGAHINLKRAERARVTVSKIPAIVDNLINRTLAWEEEKKIFFLYDGVRLVSI 470 (601)
Q Consensus 391 ~vekw~~l~~e~~~LE~~~~D~~R~~~~RG~h~~LlreEK~Rk~i~KlPkl~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~ 470 (601)
+|..|+. -...|--|+ |- .++ +.|. ++
T Consensus 403 ~l~~wE~----------e~g~pFlv~---G~--~~l----------------e~l~----------------------e~ 429 (619)
T PF03999_consen 403 KLEEWEE----------EHGKPFLVD---GE--RYL----------------EYLE----------------------EY 429 (619)
T ss_dssp HHHHHHH----------HHTS--EET---TE--EHH----------------HHHH------------------------
T ss_pred HHHHHHH----------HcCCeEEEc---Cc--cHH----------------HHHH----------------------HH
Confidence 8888822 223344444 44 111 1111 56
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhHHHhhh
Q 036719 471 LDDYKLTRVQREEEKKRYRDQKKMQDLLLTE 501 (601)
Q Consensus 471 lee~~~~r~eKE~ek~r~R~~kk~~~~~~~e 501 (601)
.++|..++++|+..+.+.+.+++.+.+..+-
T Consensus 430 ~~~~~~~~~~k~~~~~~k~~~~~~~~~~~~~ 460 (619)
T PF03999_consen 430 EEQWERKREEKERSKQQKKLQNQKQTEQEMP 460 (619)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhccccccCCCCCCCccccCCC
Confidence 6899999999999988766666666554333
No 4
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.90 E-value=7.8e-20 Score=203.09 Aligned_cols=349 Identities=18% Similarity=0.296 Sum_probs=254.6
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccc
Q 036719 76 AELATLMAALGELNIHSPIQTEKRSTSLK-EKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLIN 154 (601)
Q Consensus 76 ~El~~L~~eLg~~~~~~~~~~~~~~~tL~-eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~ 154 (601)
.+|+.||+++|++... .+..-.-|. +.+..+...+++....+..-.+++..+++++..||..|+..+.. +.
T Consensus 21 ~eL~~IW~~igE~~~e----~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~-~~--- 92 (660)
T KOG4302|consen 21 NELQKIWDEIGESETE----RDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSII-GE--- 92 (660)
T ss_pred HHHHHHHHHhCccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-cc---
Confidence 3399999999998754 111111111 23447788899999999999999999999999999999988763 21
Q ss_pred ccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHH
Q 036719 155 SLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTL 234 (601)
Q Consensus 155 ~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L 234 (601)
........-.+.|..+...+..|.+.|++|...|.++..+|..||..||..+. .+.+. ..+..++|+..|
T Consensus 93 -~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~------~~~~~---~~D~~dlsl~kL 162 (660)
T KOG4302|consen 93 -ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPED------LPSFL---IADESDLSLEKL 162 (660)
T ss_pred -cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------CCccc---ccCcccccHHHH
Confidence 01112234468899999999999999999999999999999999999998621 11111 123568999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccC--CCCCCcHHHHHHHHHHHH
Q 036719 235 EGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEIT--EPGVLSTEVIEQASTEVE 312 (601)
Q Consensus 235 ~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~--~~~~LS~~~I~~le~Ev~ 312 (601)
+.|+..+..|+++|..|++++.++...|..||..||++ |..+...++++...-. .+.++|.++|+.+..-|.
T Consensus 163 eelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~------~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~ 236 (660)
T KOG4302|consen 163 EELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLD------FSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVK 236 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccchhhhhhhhhhccCcccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 5544445555554443 368899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhhh--hhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 036719 313 RLTKLKATRMKELVLKKRSELEEICKMTHIEPDTSTAAEKSN--AMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMD 390 (601)
Q Consensus 313 RLe~lK~~~mk~lI~k~r~eLeelWd~~~~~~e~~~~~~~~~--~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~ 390 (601)
.|...|.+++.. +...+..+.+||+.|..+.+++..|.+.. .....+ ..+-+++...+.|+.+|.++..++ |=+
T Consensus 237 ~l~~~k~qr~~k-l~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~-~ls~d~I~~ve~Ev~Rl~qlK~s~--mKe 312 (660)
T KOG4302|consen 237 KLKEEKKQRLQK-LQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPN-SLSLDIIEQVEKEVDRLEQLKASN--MKE 312 (660)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccc-cccHHHHHHHHHHHHHHHHHHHHh--HHH
Confidence 999999999998 68999999999999999988754333211 122333 578999999999999999998888 777
Q ss_pred HHHHHHHHhHHHHH-HHHHcCC--cc-ccc-----cCCCccccchHHHHHHHhhh--h-hHHHHHHHHHHHHHHHHH
Q 036719 391 RIDRWLYACEEEKW-LEEYNQD--DN-RYN-----AGRGAHINLKRAERARVTVS--K-IPAIVDNLINRTLAWEEE 455 (601)
Q Consensus 391 ~vekw~~l~~e~~~-LE~~~~D--~~-R~~-----~~RG~h~~LlreEK~Rk~i~--K-lPkl~~~L~~~l~~wE~e 455 (601)
+|.+...=+ ++.| +--|+-+ .. ||. .+...+..|+-. .-..|+ | ---+-+.+..++..|+..
T Consensus 313 li~k~r~El-eel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~--~d~~i~k~keea~srk~il~~ve~W~sa 386 (660)
T KOG4302|consen 313 LIEKKRSEL-EELWRLLHYSEENESRRRFITYLIDSGTEDVLELLEN--IDNLIKKYKEEALSRKEILERVEKWESA 386 (660)
T ss_pred HHHHHHHHH-HHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777643333 2344 2223321 11 121 133444455544 111111 1 233455667777778753
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.78 E-value=20 Score=45.42 Aligned_cols=208 Identities=14% Similarity=0.129 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHH
Q 036719 165 LRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHS-ICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVK 243 (601)
Q Consensus 165 ~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~-L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~ 243 (601)
.......+..+.-+++++..+...+..+...... +...+| ++ .. . +.| ...+..+...+..
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~-~~-~---~~l------------~~~~~~~~~el~~ 588 (1311)
T TIGR00606 527 LNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG-YF-PN-K---KQL------------EDWLHSKSKEINQ 588 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-CC-c---HHH------------HHHHHHHHHHHHH
Confidence 4445566777888888888888777776666533 334445 43 11 0 111 2334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHH-------H
Q 036719 244 LKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLT-------K 316 (601)
Q Consensus 244 L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe-------~ 316 (601)
++.........+..+-.++..+=..+..-..+.+.+...... ..++..| .+.|..++.++.... .
T Consensus 589 ~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-------~~~~~~~-~~~L~~~~~~l~~~~~~~~~~~~ 660 (1311)
T TIGR00606 589 TRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD-------VCGSQDE-ESDLERLKEEIEKSSKQRAMLAG 660 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCchhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333333333333333333333333322222222222110 0011112 234555555444443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 036719 317 LKATRMKELVLKKRSELEEICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDRWL 396 (601)
Q Consensus 317 lK~~~mk~lI~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vekw~ 396 (601)
... .++.+|.....+=...|..|+=+-+.......|..-+.+......+.++..+..+..++..+..-..+-..|..|.
T Consensus 661 ~~~-~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~ 739 (1311)
T TIGR00606 661 ATA-VYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII 739 (1311)
T ss_pred HHH-HHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 211 1233332221111124555543332222222343333321112234566777777777777777777766677776
Q ss_pred HHh
Q 036719 397 YAC 399 (601)
Q Consensus 397 ~l~ 399 (601)
.+.
T Consensus 740 ~l~ 742 (1311)
T TIGR00606 740 DLK 742 (1311)
T ss_pred HHH
Confidence 665
No 6
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.57 E-value=19 Score=42.14 Aligned_cols=242 Identities=11% Similarity=0.144 Sum_probs=129.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHH
Q 036719 101 TSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQK 180 (601)
Q Consensus 101 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~ 180 (601)
..+..++..+...+..+..+...-..++..++.++..+-..+..-...+. ....-..+..+.+..++..++.
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~--------~~GG~~~~~r~~Le~ei~~le~ 276 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR--------SEGGDLFEEREQLERQLKEIEA 276 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhcchHHHHHHHHHHHHHHHHH
Confidence 45667777788777777777777777777777777666665542211100 0112244556677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 036719 181 EKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKD-IV 259 (601)
Q Consensus 181 EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~-L~ 259 (601)
++.++.+.+..+.+ .. -++.+....|..+...+.....-+ +.+.+.+ +.
T Consensus 277 e~~e~~~~l~~l~~-------~~---------------------~p~~l~~~ll~~~~~q~~~e~~~~--~~~~~~~~l~ 326 (650)
T TIGR03185 277 ARKANRAQLRELAA-------DP---------------------LPLLLIPNLLDSTKAQLQKEEQSQ--QNQLTQEELE 326 (650)
T ss_pred HHHHHHHHHHHHhc-------cc---------------------CCHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 77777664443321 11 145666678888888877766433 3333444 44
Q ss_pred HHHHHHHHHc---CCChHHHHHHHHHhhh-cccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 036719 260 VSLFELWNLM---DSPIQDKNSFSKITSI-LRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKEL---VLKKRSE 332 (601)
Q Consensus 260 ~~l~~LW~~L---~~p~eEr~~F~~~~~~-i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~l---I~k~r~e 332 (601)
.....|+..+ ..+.+..+........ ..+...+..-+-+++...+..+..-++.+..-....+..+ +.+...+
T Consensus 327 ~~~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e 406 (650)
T TIGR03185 327 ERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEE 406 (650)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 6667777766 4554444333322211 1112222333455667767666665565552222223333 3466667
Q ss_pred HHHHHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 036719 333 LEEICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRI 392 (601)
Q Consensus 333 LeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~v 392 (601)
|.++=+++.-.++.. .+. .-.+-++.++.+|..++..+.....-++..
T Consensus 407 l~~l~~~l~~~~~~e----~i~--------~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~ 454 (650)
T TIGR03185 407 LAEVDKKISTIPSEE----QIA--------QLLEELGEAQNELFRSEAEIEELLRQLETL 454 (650)
T ss_pred HHHHHHHHhcCCChH----HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766665544321 111 112335555566666655555544444433
No 7
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.99 E-value=22 Score=41.29 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHH
Q 036719 36 AEKDRILMELERECLEVY-------RRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLA 108 (601)
Q Consensus 36 ~eR~~~l~~le~e~l~v~-------~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~ 108 (601)
.+||....+|..+. ..| ...|......|......|..++..|..|-..+..++.+ +...++.- ...
T Consensus 11 ~Erd~ya~~lk~e~-a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~-----~~pa~pse-~E~ 83 (617)
T PF15070_consen 11 AERDQYAQQLKEES-AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP-----EPPAGPSE-VEQ 83 (617)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-----cccccchH-HHH
Confidence 36676666665442 223 33556666778888888889999999988888887643 22333322 335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 109 SIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLN 187 (601)
Q Consensus 109 ~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~ 187 (601)
.+...++.|+++++.-..++......-+.|+. |. .--..+|.++...+..++....+|..
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~-L~------------------~EqEerL~ELE~~le~~~e~~~D~~k 143 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSR-LN------------------QEQEERLAELEEELERLQEQQEDRQK 143 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777776665444444443322222221 10 00345666777777777766666554
No 8
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.74 E-value=24 Score=41.18 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 036719 301 TEVIEQASTEVERLTKLKATRMKELVLKKRSELEEICKMTHI 342 (601)
Q Consensus 301 ~~~I~~le~Ev~RLe~lK~~~mk~lI~k~r~eLeelWd~~~~ 342 (601)
...|+.++.=...|..++.......+..+..++.+++..+.-
T Consensus 479 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~ 520 (650)
T TIGR03185 479 ERAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMR 520 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555665566677777776666677777777777776643
No 9
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.38 E-value=38 Score=42.58 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCChHH
Q 036719 226 STNISNSTLEGLEHAIVKLKAER---KIRIQKLKDIVVSLFELWNLMDSPIQD 275 (601)
Q Consensus 226 ~~~lS~~~L~~L~~~~~~L~e~K---~~R~~kl~~L~~~l~~LW~~L~~p~eE 275 (601)
..++...+|..|+..+..|+..- .++...+.++..-+..+|..++--.+.
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~ 817 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREE 817 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45677788999999988887543 456677888999999999986643333
No 10
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.43 E-value=39 Score=40.75 Aligned_cols=180 Identities=13% Similarity=0.118 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 108 ASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLN 187 (601)
Q Consensus 108 ~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~ 187 (601)
+.+...+++-.+.-+.|.++|..++-+++.+-.++......... + ......-...+..++..+...+.+...-++
T Consensus 797 k~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~-~----~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~ 871 (1174)
T KOG0933|consen 797 KTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQ-L----EKQISSLKSELGNLEAKVDKVEKDVKKAQA 871 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 34445566666666666677777777666666666433211000 0 000000122233333333333333333333
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 188 RVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWN 267 (601)
Q Consensus 188 kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~ 267 (601)
++......+..+-.+++.- .++...+ ..........+.+|...+.+++.++.....++..+..+..-+
T Consensus 872 el~~~k~k~~~~dt~i~~~--------~~~~e~~--~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi-- 939 (1174)
T KOG0933|consen 872 ELKDQKAKQRDIDTEISGL--------LTSQEKC--LSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWI-- 939 (1174)
T ss_pred HHHHHHHHHHhhhHHHhhh--------hhHHHHH--HHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccch--
Confidence 3333333333333333210 0000000 011233455788999999999999988888888777765422
Q ss_pred HcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 036719 268 LMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKAT 320 (601)
Q Consensus 268 ~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~ 320 (601)
.+|...|...... -++...+...+..++.+|+..+..
T Consensus 940 -----~~ek~~fgk~gt~-----------yDf~~~~p~~are~l~~Lq~k~~~ 976 (1174)
T KOG0933|consen 940 -----GDEKRLFGKKGTD-----------YDFESYDPHEAREELKKLQEKKEK 976 (1174)
T ss_pred -----hHHHHhhcCCCCc-----------cccccCCHhHHHHHHHHhhHHHHH
Confidence 3778888775432 245555666777777777765544
No 11
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.35 E-value=37 Score=38.57 Aligned_cols=94 Identities=15% Similarity=0.260 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHH
Q 036719 36 AEKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVE 115 (601)
Q Consensus 36 ~eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le 115 (601)
.+|.+++..+-. +.+|..+-.........+.+.++.+..++..+-..+..-.. .+..........++
T Consensus 150 ~er~~il~~l~~--~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~-----------~i~~~~~~~~~~i~ 216 (562)
T PHA02562 150 PARRKLVEDLLD--ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK-----------NIEEQRKKNGENIA 216 (562)
T ss_pred HhHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHH
Confidence 356566655532 34555554444555556666666666666666555542110 11112222234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036719 116 DLRTKKEERMKQFADIKAQIEKISGEI 142 (601)
Q Consensus 116 ~Lrk~K~eR~~ef~~l~~qi~~L~~eL 142 (601)
.++.+..+-..+...++.++..+-..|
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666666666665555
No 12
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.33 E-value=79 Score=40.91 Aligned_cols=265 Identities=16% Similarity=0.250 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC------C
Q 036719 19 ALLRELQQIWSDIGESEAEKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGE-LNI------H 91 (601)
Q Consensus 19 ~~l~eL~~IWdEIG~~e~eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~-~~~------~ 91 (601)
.+|.-++.+=+.+-..+..-+.++..+.++.++-....|++..+.....-+.|..+..+...+-.-+.. .+. .
T Consensus 543 eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~ns 622 (1822)
T KOG4674|consen 543 ELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNS 622 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCc
Confidence 344555555555555555557777777777777788888888888888888888888877766322222 111 0
Q ss_pred CCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHH
Q 036719 92 SPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMK----QFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRR 167 (601)
Q Consensus 92 ~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~----ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~ 167 (601)
+.........++..++..+...++.++.++.+++. +|..++.++..|-..++-.. ....++.++
T Consensus 623 s~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~------------~~~~fA~ek 690 (1822)
T KOG4674|consen 623 SALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLK------------NELNLAKEK 690 (1822)
T ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHH
Confidence 01111112233456666777777777776665553 45556666666666665322 133678888
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHH
Q 036719 168 ITECQTHLRTLQKEKS---DRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKL 244 (601)
Q Consensus 168 L~~l~~~L~~Lq~EK~---~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L 244 (601)
++.|+.-|..+..+.. .|...+..++..-......+.-+ ...+++-+..|...+..|
T Consensus 691 le~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~e--------------------L~~a~~k~~~le~ev~~L 750 (1822)
T KOG4674|consen 691 LENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQE--------------------LLSANEKLEKLEAELSNL 750 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHhhhHHHHHHHHHHHHH
Confidence 8888888888888887 55554444444333333333211 122556788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 245 KAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKE 324 (601)
Q Consensus 245 ~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~ 324 (601)
..++.-+..--..|......|..... ... +....+.....+.++.+.-.+..+..
T Consensus 751 KqE~~ll~~t~~rL~~e~~~l~~e~~-------~L~------------------~~l~~lQt~~~~~e~s~~~~k~~~e~ 805 (1822)
T KOG4674|consen 751 KQEKLLLKETEERLSQELEKLSAEQE-------SLQ------------------LLLDNLQTQKNELEESEMATKDKCES 805 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777766666666665544321 111 11335555666666666666666666
Q ss_pred HHHHHHHHHHHHHHHc
Q 036719 325 LVLKKRSELEEICKMT 340 (601)
Q Consensus 325 lI~k~r~eLeelWd~~ 340 (601)
=|..+..+|..+-..+
T Consensus 806 ~i~eL~~el~~lk~kl 821 (1822)
T KOG4674|consen 806 RIKELERELQKLKKKL 821 (1822)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666665553
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.23 E-value=66 Score=39.83 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=17.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Q 036719 297 GVLSTEVIEQASTEVERLTKLKATR 321 (601)
Q Consensus 297 ~~LS~~~I~~le~Ev~RLe~lK~~~ 321 (601)
+......|+.++.-..|++.++.+.
T Consensus 971 ~~vN~~Ai~~~~~~~~~~~~l~~q~ 995 (1164)
T TIGR02169 971 EPVNMLAIQEYEEVLKRLDELKEKR 995 (1164)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777777777777777664
No 14
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.02 E-value=51 Score=40.16 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=21.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 160 EEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSI 199 (601)
Q Consensus 160 e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L 199 (601)
+.+-..++++.++.-+..+..++++=..++.+..+.|..+
T Consensus 331 e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~ 370 (1074)
T KOG0250|consen 331 EVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKL 370 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666665555444444444444443
No 15
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.49 E-value=82 Score=38.84 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHH
Q 036719 230 SNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQAST 309 (601)
Q Consensus 230 S~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~ 309 (601)
++.+|++++..+..|+.....-..++..|...+..+=.++..-..+-..+......+.. -+.++...++.
T Consensus 933 s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~----------~~~~~k~~~e~ 1002 (1293)
T KOG0996|consen 933 SDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKK----------ELRDLKSELEN 1002 (1293)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 44566666666666666666666666666666655555544333333334333332211 12344444444
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 036719 310 EVERLTKLKATRM--KELVLKKRSELEEIC 337 (601)
Q Consensus 310 Ev~RLe~lK~~~m--k~lI~k~r~eLeelW 337 (601)
.-+...+||..+| +.-+++.+.+|.++=
T Consensus 1003 i~k~~~~lk~~rId~~~K~e~~~~~l~e~~ 1032 (1293)
T KOG0996|consen 1003 IKKSENELKAERIDIENKLEAINGELNEIE 1032 (1293)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 4455555555443 334555555555543
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.69 E-value=20 Score=40.69 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036719 232 STLEGLEHAIVKLKAERKI 250 (601)
Q Consensus 232 ~~L~~L~~~~~~L~e~K~~ 250 (601)
+.+..+...+..+..++..
T Consensus 386 ~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 386 DELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777777777666654
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=85.39 E-value=1e+02 Score=38.00 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 036719 304 IEQASTEVERLT 315 (601)
Q Consensus 304 I~~le~Ev~RLe 315 (601)
+..++.++.+++
T Consensus 910 ~~~l~~~l~~l~ 921 (1179)
T TIGR02168 910 RSELRRELEELR 921 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=85.18 E-value=1.4e+02 Score=39.30 Aligned_cols=46 Identities=28% Similarity=0.355 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 036719 42 LMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGEL 88 (601)
Q Consensus 42 l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~ 88 (601)
...++-++ ...+.-+.+.+..+..+-..++....|+..|-..++..
T Consensus 1043 ~rkle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e 1088 (1930)
T KOG0161|consen 1043 KRKLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDE 1088 (1930)
T ss_pred HHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444454 45566777788888888888888888888888888764
No 19
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.14 E-value=28 Score=40.73 Aligned_cols=68 Identities=18% Similarity=0.358 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 60 AANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKIS 139 (601)
Q Consensus 60 ~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~ 139 (601)
.+..+++|.+++..+...+..|..-|+.-.. .-.+-++.+ +.+++..+-++-++..++.+|+.+-
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~--------~~tt~kt~i-------e~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRV--------DITTQKTEI-------EEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhee--------ccchHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888887777765433 223444444 4444444444555555555555444
Q ss_pred Hhh
Q 036719 140 GEI 142 (601)
Q Consensus 140 ~eL 142 (601)
..|
T Consensus 500 ~kl 502 (1118)
T KOG1029|consen 500 EKL 502 (1118)
T ss_pred HHH
Confidence 433
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=83.45 E-value=1.1e+02 Score=36.87 Aligned_cols=32 Identities=3% Similarity=0.165 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 036719 364 PSELLANIEAQIVKVKDEALSRKDIMDRIDRW 395 (601)
Q Consensus 364 ~eelL~~~E~eI~~lke~~~~~k~Il~~vekw 395 (601)
-++.|..++.++..+++.....+.......+.
T Consensus 410 ~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 441 (880)
T PRK02224 410 AEDFLEELREERDELREREAELEATLRTARER 441 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777776666555555544443
No 21
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.43 E-value=45 Score=38.29 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 53 YRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIK 132 (601)
Q Consensus 53 ~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~ 132 (601)
|...+.+....-......+.++..++....+.|...| +.+..+...+..++..+..--..+.++.
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp---------------~~L~ele~RL~~l~~LkrKyg~s~e~l~ 328 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDP---------------ERLNEIEERLAQIKRLKRKYGASVEEVL 328 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5555555555555666666666666666666653322 1344555555555555544445666666
Q ss_pred HHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhC
Q 036719 133 AQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEK--------SDRLNRVLEYVNEVHSICGVLG 204 (601)
Q Consensus 133 ~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK--------~~R~~kv~~l~~~I~~L~~~Lg 204 (601)
...+.+-.+|..-.. +...++.++.++..++++. ..|.+....+...|...+..||
T Consensus 329 ~~~~~l~~eL~~l~~----------------~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 329 EYAEKIKEELDQLDD----------------SDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALA 392 (563)
T ss_pred HHHHHHHHHHHHHhC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 666666666653221 2224444444444444443 3466777888899999999999
Q ss_pred CC
Q 036719 205 LD 206 (601)
Q Consensus 205 ~d 206 (601)
|+
T Consensus 393 m~ 394 (563)
T TIGR00634 393 ME 394 (563)
T ss_pred CC
Confidence 97
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.36 E-value=11 Score=40.25 Aligned_cols=125 Identities=16% Similarity=0.250 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 55 RKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQ 134 (601)
Q Consensus 55 ~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~q 134 (601)
..+.........+...-+.+..++..|-....+.... =.+.+..++..|..+....+.+.+.+.+++.+
T Consensus 170 ~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~-----------D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~e 238 (325)
T PF08317_consen 170 KQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC-----------DQEELEALRQELAEQKEEIEAKKKELAELQEE 238 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555544443332111 01345555555555555555555555555555
Q ss_pred HHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCccc
Q 036719 135 IEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDR----LNRVLEYVNEVHSICGVLGLDFGQ 209 (601)
Q Consensus 135 i~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R----~~kv~~l~~~I~~L~~~Lg~d~~~ 209 (601)
+..+-..+.. ...+..++...|..+++....+ ...|..+...+..|....|..+..
T Consensus 239 l~~l~~~i~~-------------------~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~ 298 (325)
T PF08317_consen 239 LEELEEKIEE-------------------LEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWKIVS 298 (325)
T ss_pred HHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEE
Confidence 5555544421 2344556666777766665533 346788888888899999987643
No 23
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=80.40 E-value=2e+02 Score=37.58 Aligned_cols=283 Identities=18% Similarity=0.213 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 61 ANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISG 140 (601)
Q Consensus 61 ~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~ 140 (601)
-..|.++-+.|..+..+++.|...+...... ...-...+..++..+...++.+......-...+..+...|..+-.
T Consensus 797 ~~~k~~~e~~i~eL~~el~~lk~klq~~~~~----~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~ 872 (1822)
T KOG4674|consen 797 MATKDKCESRIKELERELQKLKKKLQEKSSD----LRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEI 872 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777665433 222334555667777777777777777777777776666665554
Q ss_pred hhCC-------CCCCCcccccc-cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Q 036719 141 EISG-------YDHLSNSLINS-LSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVS 212 (601)
Q Consensus 141 eL~~-------~~~~~~e~l~~-~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ 212 (601)
.+.. ...... .++. ....+...-.+.|.....++..|..+...+...+..|.......-.-|....
T Consensus 873 k~~eL~k~l~~~~~~~~-~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~k----- 946 (1822)
T KOG4674|consen 873 KLSELEKRLKSAKTQLL-NLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVK----- 946 (1822)
T ss_pred HHHHHHHHHHHhHHHHh-hccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 4332 110000 0101 1112233445567777788888899999999888888888777766665321
Q ss_pred ccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHhhhcccCcc
Q 036719 213 DVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNS-FSKITSILRLSES 291 (601)
Q Consensus 213 ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~-F~~~~~~i~~s~~ 291 (601)
+-.+.+...+...+..+...+.....++.+|...|..|-+.+.......+. -...
T Consensus 947 ---------------s~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~--------- 1002 (1822)
T KOG4674|consen 947 ---------------SELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDL--------- 1002 (1822)
T ss_pred ---------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHH---------
Confidence 112344556677777788888888888899999999999888765443222 2221
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCccchHHHhhhhhhhc--CCCCCcHH
Q 036719 292 EITEPGVLSTEVIEQASTEVERLTKLKATRMKELVLKKRSELE---EICKMTHIEPDTSTAAEKSNAMID--SGLVDPSE 366 (601)
Q Consensus 292 ~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~k~r~eLe---elWd~~~~~~e~~~~~~~~~~~~~--s~~~~~ee 366 (601)
...|..+..|+..+.....+..+ -+..++..+. +.|..|+-.=+. ..+..-+ +......+
T Consensus 1003 ---------~~e~~sl~ne~~~~~~~~s~~~~-~~~~~k~dl~~~~~~~~~a~~~Ye~-----el~~ha~~~q~l~kl~e 1067 (1822)
T KOG4674|consen 1003 ---------SREISSLQNELKSLLKAASQANE-QIEDLQNDLKTETEQLRKAQSKYES-----ELVQHADLTQKLIKLRE 1067 (1822)
T ss_pred ---------HHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 34678889999999888887654 3566665554 447766543111 1111100 00012223
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 036719 367 LLANIEAQIVKVKDEALSRKDIMDRI 392 (601)
Q Consensus 367 lL~~~E~eI~~lke~~~~~k~Il~~v 392 (601)
-+..+-.++..|+....++..+++.-
T Consensus 1068 e~~~~~~e~~~Lk~~~~~~~~~l~e~ 1093 (1822)
T KOG4674|consen 1068 EFAKCNDELLKLKKSRESRHALLSEQ 1093 (1822)
T ss_pred HHHHHHHHHHHHHhhHHHHHhHHhhc
Confidence 35555566666666666666555443
No 24
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=80.39 E-value=52 Score=35.06 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhCCChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Q 036719 18 NALLRELQQIWSDIGESEAEK-----DRILMELERECLEVYRRKVEEAANAKARLHQT----------VAAKEAELATLM 82 (601)
Q Consensus 18 ~~~l~eL~~IWdEIG~~e~eR-----~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~----------I~~~~~El~~L~ 82 (601)
.+++.+|..+-.|+|.|...= ...+.. ...|+-++.=.+.|....|=-..+. -.....++..+|
T Consensus 61 ~~f~~Els~~L~El~CPy~~L~~G~~~~rl~~-~~~~l~LL~fL~sELqaarl~~~k~~~~~~~~~~~~s~~~~~l~~i~ 139 (318)
T PF10239_consen 61 ESFLLELSGFLKELGCPYSALTSGDISDRLQS-KEDRLLLLEFLCSELQAARLLAKKKPEEPEQEEEKESEVAQELKAIC 139 (318)
T ss_pred HHHHHHHHHHHHhcCCCcHHHcCCcchhhhcC-HHHHHHHHHHHHHHHHHHHHHHhccCCccccccccccHHHHHHHHHH
Confidence 357888999999999885410 000000 1122223332233322222111111 244556899999
Q ss_pred HHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCC
Q 036719 83 AALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEED 162 (601)
Q Consensus 83 ~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~d 162 (601)
..||.+..+ .+.+..+.+..|.++++ .+...+. +..++ .|-+ ...
T Consensus 140 ~~L~l~~p~-------~~i~~~~lf~~i~~ki~---------------------~~L~~lp--~~~~~----~PLl-~~~ 184 (318)
T PF10239_consen 140 QALGLPKPP-------PNITASQLFSKIEAKIE---------------------ELLSKLP--PGHMG----KPLL-KKS 184 (318)
T ss_pred HHhCCCCCC-------CCCCHHHHHHHHHHHHH---------------------HHHHhcC--ccccC----CCCc-CCC
Confidence 999997653 44566666555555443 2223232 22222 2223 568
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 163 LSLRRITECQTHLRTLQKEKSDRLN 187 (601)
Q Consensus 163 lS~~~L~~l~~~L~~Lq~EK~~R~~ 187 (601)
||.++.+.|...-+.|..||.-|.+
T Consensus 185 L~~~Qw~~Le~i~~~L~~EY~~RR~ 209 (318)
T PF10239_consen 185 LTDEQWEKLEKINQALSKEYECRRQ 209 (318)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986
No 25
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.26 E-value=1.5e+02 Score=36.08 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 036719 469 SILDDYKLTRVQREEEKKRYRDQKKMQ 495 (601)
Q Consensus 469 ~~lee~~~~r~eKE~ek~r~R~~kk~~ 495 (601)
.-++||...-.+||.=+.|+-++++.+
T Consensus 974 kAldQf~nfseQre~L~~R~eELd~s~ 1000 (1200)
T KOG0964|consen 974 KALDQFVNFSEQRESLKKRQEELDRSK 1000 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 356899999999998888877666544
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=79.91 E-value=1.5e+02 Score=35.82 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 036719 229 ISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLM 269 (601)
Q Consensus 229 lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L 269 (601)
++.+.+..+...+..++.....-...+..+...+..|...+
T Consensus 656 ~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i 696 (880)
T PRK03918 656 YSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696 (880)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777666666666666666666666666655
No 27
>PRK11637 AmiB activator; Provisional
Probab=78.91 E-value=1.1e+02 Score=33.78 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036719 102 SLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEIS 143 (601)
Q Consensus 102 tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~ 143 (601)
.+.++++.+..++..+.+...+-..++.++..++..+-..|.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~ 85 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAIS 85 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665555555555555555555555544
No 28
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=78.47 E-value=1.7e+02 Score=35.70 Aligned_cols=83 Identities=25% Similarity=0.300 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 52 VYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADI 131 (601)
Q Consensus 52 v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l 131 (601)
+|...|++++.--+-|+.+..-++++|+.+...=.--. .+..-.+++++++.++.+.+..+.+.++-+.+...+
T Consensus 261 fykdRveelkedN~vLleekeMLeeQLq~lrarse~~t------leseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGAT------LESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCC------hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 46667777777666777777777777777765431111 233456788888888888888888888888887777
Q ss_pred HHHHHHHHH
Q 036719 132 KAQIEKISG 140 (601)
Q Consensus 132 ~~qi~~L~~ 140 (601)
+.+-..|-.
T Consensus 335 q~q~eqL~~ 343 (1195)
T KOG4643|consen 335 QVQKEQLDG 343 (1195)
T ss_pred HHHHHHhhh
Confidence 766655543
No 29
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.56 E-value=1.9e+02 Score=35.60 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHH-HHHHHHHHHHHH
Q 036719 109 SIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHL-RTLQKEKSDRLN 187 (601)
Q Consensus 109 ~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L-~~Lq~EK~~R~~ 187 (601)
.-.+.++.+++.......++.+++.++..+|..|...-. ..|.-.+.+..++.+. ..++.++.++.+
T Consensus 334 ~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~------------~~d~l~k~I~~~~~~~~~~~~~~~~e~e~ 401 (1074)
T KOG0250|consen 334 AQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKK------------EVDRLEKQIADLEKQTNNELGSELEEREN 401 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 334555556666666666667777777777765543211 1122334444444444 444555555544
Q ss_pred HHHHHHHHHHH
Q 036719 188 RVLEYVNEVHS 198 (601)
Q Consensus 188 kv~~l~~~I~~ 198 (601)
++..+..++..
T Consensus 402 k~~~L~~evek 412 (1074)
T KOG0250|consen 402 KLEQLKKEVEK 412 (1074)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 30
>PRK02224 chromosome segregation protein; Provisional
Probab=75.43 E-value=1.9e+02 Score=34.86 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHH
Q 036719 368 LANIEAQIVKVKDEALSRKDIMD 390 (601)
Q Consensus 368 L~~~E~eI~~lke~~~~~k~Il~ 390 (601)
++.++.++..++..+..-+.+.+
T Consensus 484 ~~~le~~l~~~~~~~e~l~~~~~ 506 (880)
T PRK02224 484 LEDLEEEVEEVEERLERAEDLVE 506 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444444433
No 31
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.23 E-value=1.6e+02 Score=33.86 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036719 19 ALLRELQQIWSDIGESEA-EKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGE 87 (601)
Q Consensus 19 ~~l~eL~~IWdEIG~~e~-eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~ 87 (601)
..+.+++.=|++|--..- +=+..+..++..+ + +-.+-.+...-..+.+.|..+..++..|..+|..
T Consensus 64 ~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~-~--~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~ 130 (569)
T PRK04778 64 EKFEEWRQKWDEIVTNSLPDIEEQLFEAEELN-D--KFRFRKAKHEINEIESLLDLIEEDIEQILEELQE 130 (569)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-h--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778999999754433 4456667765532 2 3456666777777777777777777777777654
No 32
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.67 E-value=78 Score=34.31 Aligned_cols=78 Identities=12% Similarity=0.230 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 52 VYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADI 131 (601)
Q Consensus 52 v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l 131 (601)
-||..++++...+..+...+.+....|..|-.+++-.-.. +.-+++.|..+++.+..++.....++.++
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lek-----------I~sREk~iN~qle~l~~eYr~~~~~ls~~ 285 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEK-----------IESREKYINNQLEPLIQEYRSAQDELSEV 285 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999988888754221 22244555555666655555555555555
Q ss_pred HHHHHHHHH
Q 036719 132 KAQIEKISG 140 (601)
Q Consensus 132 ~~qi~~L~~ 140 (601)
+.+....+.
T Consensus 286 ~~~y~~~s~ 294 (359)
T PF10498_consen 286 QEKYKQASE 294 (359)
T ss_pred HHHHHHHhh
Confidence 555554443
No 33
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=74.63 E-value=1.7e+02 Score=33.72 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036719 17 CNALLRELQQIWSDIGESE-AEKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGE 87 (601)
Q Consensus 17 c~~~l~eL~~IWdEIG~~e-~eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~ 87 (601)
+...+.+++.=|++|--.. .+-+..|.+++.. +.+-.+..+...-..+.+.|..+..++..|..+|..
T Consensus 58 t~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~---~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~ 126 (560)
T PF06160_consen 58 TEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEY---ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDE 126 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566888999999997443 3556677777653 234556677777777888888888888888777764
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.93 E-value=1.3e+02 Score=32.05 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CC-ccccCCCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 036719 56 KVEEAANAKARLHQTVAAKEAELATLMAALGELNIH---SP-IQTEKRSTSLKEKLASIAPL--VEDLRTKKEERMKQFA 129 (601)
Q Consensus 56 ~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~---~~-~~~~~~~~tL~eql~~l~~~--le~Lrk~K~eR~~ef~ 129 (601)
+++--.-....|...|.+.+.-+..+-.++...+.+ .. .-.+.....+..|+..++.. ++.-..-++=|++-+.
T Consensus 69 ~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~ 148 (325)
T PF08317_consen 69 MLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLE 148 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455567777888888888887777763321 00 00122334566777766655 5555566677888888
Q ss_pred HHHHHHHHHHHhhC
Q 036719 130 DIKAQIEKISGEIS 143 (601)
Q Consensus 130 ~l~~qi~~L~~eL~ 143 (601)
.++..+..-...|.
T Consensus 149 gl~~~L~~~~~~L~ 162 (325)
T PF08317_consen 149 GLKEGLEENLELLQ 162 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877777666553
No 35
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=73.33 E-value=1.8e+02 Score=33.37 Aligned_cols=183 Identities=14% Similarity=0.183 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 48 ECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQ 127 (601)
Q Consensus 48 e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~e 127 (601)
.-|..|=.+|-.++.+-.. +..+|..|-...|-+........+. .+...+.-|++-.+.+..-..+
T Consensus 49 DRLA~YIekVR~LEaqN~~-------L~~di~~lr~~~~~~ts~ik~~ye~-------El~~ar~~l~e~~~~ra~~e~e 114 (546)
T KOG0977|consen 49 DRLAVYIEKVRFLEAQNRK-------LEHDINLLRGVVGRETSGIKAKYEA-------ELATARKLLDETARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccCCCcchhHHhhh-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666654444444 4444444444555432110000111 1223444445444455444555
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 036719 128 FADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDF 207 (601)
Q Consensus 128 f~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~ 207 (601)
|..++.++..+-.-+........ ..-.+.+-=...|..++..+..++..+..=...+..+..++..|+..|+--
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~-----~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~- 188 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERR-----GAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARA- 188 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-
Confidence 55555555544443322211000 000000112344555555555555555555555556666666666655521
Q ss_pred cccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 208 GQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSL 262 (601)
Q Consensus 208 ~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l 262 (601)
+..+++ ...+-.+.-.+.+.+++.|.-.+......|.+.+...
T Consensus 189 -------r~~ld~-----Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 189 -------RKQLDD-----ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred -------HHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 000100 1122233445555666666666666666665554444
No 36
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=73.02 E-value=1.1e+02 Score=33.90 Aligned_cols=171 Identities=18% Similarity=0.215 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCC-CHHHHHHHHHHHHH
Q 036719 165 LRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNI-SNSTLEGLEHAIVK 243 (601)
Q Consensus 165 ~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~l-S~~~L~~L~~~~~~ 243 (601)
...+..|+..|..|+.-+..-...+...+..|..-... +... ++.. .+..=..+..-...
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~----~k~~---------------s~~~~~~~~R~~~~~~k~~ 210 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKK----VKSA---------------STNASGDSNRAYMESGKKK 210 (424)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh---------------hccccccchhHHHHHHHHH
Confidence 55777777777777777776666444444433332211 1110 1111 23344555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 244 LKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMK 323 (601)
Q Consensus 244 L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk 323 (601)
|...-..-..++.+|...|..|=. ... .+|+.| +..-++.+..++.++..-=.. |+
T Consensus 211 L~~~sd~Ll~kVdDLQD~VE~LRk----------DV~--~RgvRp-----------~~~qle~v~kdi~~a~~~L~~-m~ 266 (424)
T PF03915_consen 211 LSEESDRLLTKVDDLQDLVEDLRK----------DVV--QRGVRP-----------SPKQLETVAKDISRASKELKK-MK 266 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHH--HH----------------HHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHH--HcCCcC-----------CHHHHHHHHHHHHHHHHHHHH-HH
Confidence 666666666666666666665532 222 233332 467788888888887765444 78
Q ss_pred HHHHHHHHHHHHHHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 036719 324 ELVLKKRSELEEICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDRW 395 (601)
Q Consensus 324 ~lI~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vekw 395 (601)
.+|...+--|..+|..-.= ++ +.-.+.|...|.-+..|++-+..-..+|.+|+++
T Consensus 267 ~~i~~~kp~WkKiWE~EL~---------~V--------~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~ 321 (424)
T PF03915_consen 267 EYIKTEKPIWKKIWESELQ---------KV--------CEEQQFLKLQEDLLSDLKEDLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHH---------HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999975321 11 1224456667777888888888888999999987
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=72.96 E-value=2.4e+02 Score=34.86 Aligned_cols=36 Identities=3% Similarity=0.042 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 167 RITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGV 202 (601)
Q Consensus 167 ~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~ 202 (601)
.+..++..+..++.+...-...+..+...+..+-..
T Consensus 799 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e 834 (1164)
T TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444444444444444333
No 38
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.67 E-value=1.1e+02 Score=30.94 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 52 VYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADI 131 (601)
Q Consensus 52 v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l 131 (601)
=++.++.+..+.+++|+++++.+..+-. .+..+....+.|..++...+.++..+
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~--------------------------~L~e~~kE~~~L~~Er~~h~eeLrqI 58 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEEK--------------------------CLEEYRKEMEELLQERMAHVEELRQI 58 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888888888888766432 34467777788888888888888888
Q ss_pred HHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcc
Q 036719 132 KAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGV-LGLDFG 208 (601)
Q Consensus 132 ~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~-Lg~d~~ 208 (601)
..+|..|=+.|.. +....+..+..+..+..|+. .++..|..+-.. +|++.-
T Consensus 59 ~~DIn~lE~iIkq-------------------a~~er~~~~~~i~r~~eey~-------~Lk~~in~~R~e~lgl~~L 110 (230)
T PF10146_consen 59 NQDINTLENIIKQ-------------------AESERNKRQEKIQRLYEEYK-------PLKDEINELRKEYLGLEPL 110 (230)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCCCC
Confidence 8888887665532 22333444555555555544 444555555555 888754
No 39
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=72.22 E-value=72 Score=30.34 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhhhc---------------------ccCccccCCCCCCc-HHHHHHHHHHHH
Q 036719 255 LKDIVVSLFELWNLMDSPIQDKNSFSKITSIL---------------------RLSESEITEPGVLS-TEVIEQASTEVE 312 (601)
Q Consensus 255 l~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i---------------------~~s~~~~~~~~~LS-~~~I~~le~Ev~ 312 (601)
++..+.+|.+||+.|++|--.|-.|--...|= ++...-+.+...+| ..++.++..|-+
T Consensus 2 Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER~ 81 (161)
T PF11995_consen 2 FERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRERE 81 (161)
T ss_pred hHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHHH
Confidence 45678899999999999988877774433321 00000011112223 336666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhhhhhhcCC
Q 036719 313 RLTKLKATRMKELVLKKRSELEEICKMTHIEPDTSTAAEKSNAMIDSG 360 (601)
Q Consensus 313 RLe~lK~~~mk~lI~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~ 360 (601)
-|-..-..++ .+.|.+.++-+.+++.+..+-+-++...+=++
T Consensus 82 ~L~k~m~~rl------s~eere~ly~kWgI~l~sK~RrlQL~~~LWt~ 123 (161)
T PF11995_consen 82 MLAKQMQKRL------SREEREELYKKWGIPLDSKQRRLQLANRLWTD 123 (161)
T ss_pred HHHHHHHHhC------CHHHHHHHHHhcCCCCcchHHHHHHHHHHcCC
Confidence 5533322222 24688999999999998765555777666553
No 40
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=71.89 E-value=1.3e+02 Score=31.34 Aligned_cols=36 Identities=8% Similarity=0.294 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHH
Q 036719 365 SELLANIEAQIVKVKDEALSRKDIMDRIDRWLYACEEEKWLE 406 (601)
Q Consensus 365 eelL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~e~~~LE 406 (601)
...+..+|.+|..++. .|-..+..+..+++-...|+
T Consensus 261 ~~~i~~le~el~~l~~------~~~~~~~ey~~Ll~~K~~Ld 296 (312)
T PF00038_consen 261 QAEIAELEEELAELRE------EMARQLREYQELLDVKLALD 296 (312)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHH------HHHHHHHHHHHHHHHHHhHH
Confidence 3446666666666665 44445555555655555543
No 41
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=71.67 E-value=2.5e+02 Score=34.51 Aligned_cols=94 Identities=16% Similarity=0.226 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHH
Q 036719 164 SLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVK 243 (601)
Q Consensus 164 S~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~ 243 (601)
...-|.++-.++..|++++-..+..|...++.+.+-...+.. ..+.....|... .++.++ +-|++|...++.
T Consensus 1177 ~dAyl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~-LrnErIKkHGaS-----kePLDl--SDlDkLk~~LQ~ 1248 (1439)
T PF12252_consen 1177 YDAYLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEF-LRNERIKKHGAS-----KEPLDL--SDLDKLKGQLQK 1248 (1439)
T ss_pred HHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHH-HHHHHhhccCCC-----CCccch--hhHHHHHHHHHH
Confidence 333444455556666666655555555555555444444332 111111122111 124444 457777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 036719 244 LKAERKIRIQKLKDIVVSLFELWNLMDS 271 (601)
Q Consensus 244 L~e~K~~R~~kl~~L~~~l~~LW~~L~~ 271 (601)
...- -+..|...+....+.|.+
T Consensus 1249 iNQ~------LV~~LIn~iR~slnqme~ 1270 (1439)
T PF12252_consen 1249 INQN------LVKALINTIRVSLNQMEV 1270 (1439)
T ss_pred HHHH------HHHHHHHHHHHHHHHhhh
Confidence 6432 234455555555555553
No 42
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.94 E-value=98 Score=34.67 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 036719 48 ECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAAL---GELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEER 124 (601)
Q Consensus 48 e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eL---g~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR 124 (601)
..++.+-..|.++.+.-+.-.-.|+.++..+.+|...+ ...... ..+.+.+|.--++.|+.+|+.|..+-+.=
T Consensus 355 ~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqei----lr~~G~~L~~~EE~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 355 IRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEI----LRKRGYALTPDEEELRAKLDTLLAQLNAP 430 (508)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCCcCCccHHHHHHHHHHHHHHhcCh
Confidence 45556667777888777777777777777776665322 111110 12344455555556666666666554322
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 036719 125 MKQFADIKAQIEKISGEIS 143 (601)
Q Consensus 125 ~~ef~~l~~qi~~L~~eL~ 143 (601)
.++...+..|.+.+.
T Consensus 431 ----nq~k~Rl~~L~e~~r 445 (508)
T KOG3091|consen 431 ----NQLKARLDELYEILR 445 (508)
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 333444444444443
No 43
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=68.88 E-value=2.9e+02 Score=34.09 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 036719 303 VIEQASTEVERLT 315 (601)
Q Consensus 303 ~I~~le~Ev~RLe 315 (601)
.+..++.++.++.
T Consensus 916 ~l~~l~~~~~~~~ 928 (1179)
T TIGR02168 916 ELEELREKLAQLE 928 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.54 E-value=2.6e+02 Score=33.31 Aligned_cols=30 Identities=17% Similarity=0.440 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 036719 117 LRTKKEERMKQFADIKAQIEKISGEISGYD 146 (601)
Q Consensus 117 Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~ 146 (601)
++.++..+..+++.+..+++.|...|+...
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr 464 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVR 464 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence 666677777888888888888888776543
No 45
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=67.48 E-value=2.8e+02 Score=33.32 Aligned_cols=224 Identities=16% Similarity=0.252 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCC
Q 036719 18 NALLRELQQIWSDIGESEAEKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALG-------ELNI 90 (601)
Q Consensus 18 ~~~l~eL~~IWdEIG~~e~eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg-------~~~~ 90 (601)
++++..+..+|. |+-.|++-+..-+.--+.++..-+......-..+.-.|..++.+| ....+++ -..+
T Consensus 27 ~~~~~~i~~fws----pElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~ 101 (775)
T PF10174_consen 27 GSSMNSIKTFWS----PELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQY 101 (775)
T ss_pred HHHHHhHhcccc----hhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhccc
Confidence 344455555553 555666655555444445555544444444446666666777766 5554444 2221
Q ss_pred CCCccccCCCCcHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccccc
Q 036719 91 HSPIQTEKRSTSLKEK--------------LASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSL 156 (601)
Q Consensus 91 ~~~~~~~~~~~tL~eq--------------l~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~ 156 (601)
.. +... ..-+...+ +..++..++.+..+...-.+.+......|..|...|.+.... ..
T Consensus 102 e~-e~l~-~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~------~~ 173 (775)
T PF10174_consen 102 EF-ESLQ-ELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLS------AE 173 (775)
T ss_pred cc-chhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc------cc
Confidence 10 0000 00011111 112333344443333333344445555666666666432111 00
Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHH
Q 036719 157 SLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEG 236 (601)
Q Consensus 157 ~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~ 236 (601)
...+...-..++.++..++..|+..++.+-.....+...+|.-+ .+.++... -..
T Consensus 174 ~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~---~~~~~~a~----------------------t~a 228 (775)
T PF10174_consen 174 AEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL---QMERDDAE----------------------TEA 228 (775)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hcCCCchh----------------------HHH
Confidence 01122334557888888888888777777766666655555443 22221110 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 036719 237 LEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSF 279 (601)
Q Consensus 237 L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F 279 (601)
|+..|..=...-..-...+..+-..|..|=..+++...+|+.-
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~ 271 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRL 271 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 3333222222222222334557788888888888887776533
No 46
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=67.19 E-value=1.7e+02 Score=30.77 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036719 55 RKVEEAANAKARLHQTVAAKEAELATLMAALGE 87 (601)
Q Consensus 55 ~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~ 87 (601)
..|.+....|..+...+..+..++..+....+.
T Consensus 69 eev~elK~kR~ein~kl~eL~~~~~~l~e~~~~ 101 (294)
T COG1340 69 EEVQELKEKRDEINAKLQELRKEYRELKEKRNE 101 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355555556666666666666666666666553
No 47
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.96 E-value=1.7e+02 Score=32.23 Aligned_cols=176 Identities=19% Similarity=0.175 Sum_probs=89.5
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CC---ccccCCCCcHHHHHHHHHHHHHHHH
Q 036719 52 VYRRKVEEAAN-------AKARLHQTVAAKEAELATLMAALGELNIH---SP---IQTEKRSTSLKEKLASIAPLVEDLR 118 (601)
Q Consensus 52 v~~~~V~e~~~-------~k~~L~q~I~~~~~El~~L~~eLg~~~~~---~~---~~~~~~~~tL~eql~~l~~~le~Lr 118 (601)
++.++|.+... ...++.++...+......|-.-+-+.... .. .+....-.-.+++.+++.....+|+
T Consensus 226 flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr 305 (502)
T KOG0982|consen 226 FLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMR 305 (502)
T ss_pred HHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544 35566666666666444443333222110 00 0001111223344444444444443
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 036719 119 TK-KEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEK---SDRLNRVLEYVN 194 (601)
Q Consensus 119 k~-K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK---~~R~~kv~~l~~ 194 (601)
-+ .++=..++..+...+..+|+.|.+..+ =+.+.|+.++.++...|+.+ .+++..|..-..
T Consensus 306 ~qqleeentelRs~~arlksl~dklaee~q---------------r~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~eke 370 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARLKSLADKLAEEDQ---------------RSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKE 370 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 22 122333444455555566666654332 27788888888887777665 566667777778
Q ss_pred HHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 036719 195 EVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAE 247 (601)
Q Consensus 195 ~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~ 247 (601)
.+..|+.+|+....+. ... .+ .+.. ...+++-.....|...+.+|...
T Consensus 371 atqELieelrkelehl-r~~--kl-~~a~-p~rgrsSaRe~eleqevkrLrq~ 418 (502)
T KOG0982|consen 371 ATQELIEELRKELEHL-RRR--KL-VLAN-PVRGRSSAREIELEQEVKRLRQP 418 (502)
T ss_pred HHHHHHHHHHHHHHHH-HHH--HH-Hhhc-cccCchhHHHHHHHHHHHHhccc
Confidence 8888888888654322 100 00 0111 12344556666777777776543
No 48
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=66.57 E-value=1.5e+02 Score=30.03 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 117 LRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEV 196 (601)
Q Consensus 117 Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I 196 (601)
+...+..|...+..+...+..++..-... +..+-.--+++|...-..|..|...|...=.+++..|
T Consensus 166 i~~Ek~~Re~~~~~l~~~le~~~~~~~~~--------------~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~al 231 (247)
T PF06705_consen 166 IEKEKNTRESKLSELRSELEEVKRRREKG--------------DEQFQNFVLEEIAALKNALALESQEREQSDDDIVQAL 231 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33455555566666666666555422111 1133444566666677777888888888777788887
Q ss_pred HHHHHHhC
Q 036719 197 HSICGVLG 204 (601)
Q Consensus 197 ~~L~~~Lg 204 (601)
..+...|.
T Consensus 232 n~yt~~lQ 239 (247)
T PF06705_consen 232 NHYTKALQ 239 (247)
T ss_pred HHHHHHHH
Confidence 77777664
No 49
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=65.61 E-value=2.3e+02 Score=31.78 Aligned_cols=330 Identities=13% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHH
Q 036719 18 NALLRELQQIWSDIGESEAEKDRILMELERECLEVYRRKVEEAAN--------------------------AKARLHQTV 71 (601)
Q Consensus 18 ~~~l~eL~~IWdEIG~~e~eR~~~l~~le~e~l~v~~~~V~e~~~--------------------------~k~~L~q~I 71 (601)
......|..||++|..--..|...+..+...+..+...-.+.... .-..+-+.+
T Consensus 64 ~~~~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv~rli~~ea~~iN~~l 143 (473)
T PF14643_consen 64 EYSIQDLLELWDEVAEHSQKRKQWIKELDEDLEELEKERADKLKKVLRKYVEILEKIAHLLPPDVERLIEKEAMEINQAL 143 (473)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q 036719 72 AAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKE-----------------ERMKQFADIKAQ 134 (601)
Q Consensus 72 ~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~-----------------eR~~ef~~l~~q 134 (601)
-.-+..++.|..-|...... ...............-..++.... +|.+.|..+...
T Consensus 144 l~Nrra~a~L~~~L~~~~~~-------~e~~~~~~w~~~~~~Wr~l~~~~~i~~f~~~~~s~~~~~P~~~~~~~e~~~~~ 216 (473)
T PF14643_consen 144 LGNRRAYADLFANLMEAELQ-------RELSYRRRWQDRVDDWRALRHERAIQEFREFMASEEFQNPPERKQLLEQMRKE 216 (473)
T ss_pred HHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCccccCCChHHHHHHHHHHHH
Q ss_pred HHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Q 036719 135 IEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDV 214 (601)
Q Consensus 135 i~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev 214 (601)
...|....-.--.. ...+.-..+|...+.+-...+..|.+....-.. .+...|+.+....+-.....+..+
T Consensus 217 Q~~l~~~r~~~L~~------l~~l~Pp~~t~~~v~eW~~~l~~l~~~~d~~~~---~~~~~lr~~~E~~~~ec~~~ve~~ 287 (473)
T PF14643_consen 217 QVDLHEKRLELLQS------LCDLLPPNLTKEKVEEWYASLNALNEQIDEYHQ---QCMEKLRALYEKICQECLALVEKL 287 (473)
T ss_pred HHHHHHHHHHHHHH------hhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCccCCCCCCCCCC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Q 036719 215 HPSLHGTAMGHSTNI------------------SNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDK 276 (601)
Q Consensus 215 ~~sl~~~~~~~~~~l------------------S~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr 276 (601)
...|.+......-.. ...-|+.+.+.++.+...-......+-.....+..+|+..+..
T Consensus 288 k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~~~---- 363 (473)
T PF14643_consen 288 KQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTEAQSEDLFKFFQEAAQLWDEHRKK---- 363 (473)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred HHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhhhhh
Q 036719 277 NSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELVLKKRSELEEICKMTHIEPDTSTAAEKSNAM 356 (601)
Q Consensus 277 ~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~k~r~eLeelWd~~~~~~e~~~~~~~~~~~ 356 (601)
+...-..-..+|+..+..+ .......-..|..+.+.+-....+..-...+...
T Consensus 364 --------------------------l~~~e~~l~~~l~~~r~~~-~~~~q~~E~~Ld~~~d~lRq~s~ee~L~~~l~~~ 416 (473)
T PF14643_consen 364 --------------------------LSKQEEELEKRLEQCREKH-DQENQEKEAKLDIALDRLRQASSEEKLKEHLEKA 416 (473)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q ss_pred hcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 036719 357 IDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDR 394 (601)
Q Consensus 357 ~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vek 394 (601)
...=+.--...-..|...+..++++...-...++.++.
T Consensus 417 ~~~Ld~Ie~~Y~~fh~~~~~~~~~yP~~i~~e~~~Y~~ 454 (473)
T PF14643_consen 417 LDLLDQIEEEYEDFHKKQTAIVMEYPEMILKELESYSE 454 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 50
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=64.21 E-value=3.1e+02 Score=34.15 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 036719 232 STLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMD 270 (601)
Q Consensus 232 ~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~ 270 (601)
..|.--+..+.+.+++-..-...+.....++.+||.+|.
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666667777778888888888774
No 51
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=63.50 E-value=2.5e+02 Score=31.41 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 55 RKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQ 134 (601)
Q Consensus 55 ~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~q 134 (601)
..+.+.+........+++..++.+..|-..++..+.............+..++..+..++..++.++.+..-.+.+++.+
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~q 283 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKRE 283 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 34455556666666677777777788888777532110000112345788999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 036719 135 IEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLG 204 (601)
Q Consensus 135 i~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg 204 (601)
|..+-..+......... ... .... ...-+..+...+..++.+...-..++..+...+..+-..++
T Consensus 284 i~~l~~~l~~~~~~~~~---~~~-~~~~-~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 284 IAQLEEQKEEEGSAKNG---GPE-RGEI-ANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHhhcccccc---Ccc-cccc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877543211000 000 0001 11224566666777777666666666666666666655554
No 52
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.46 E-value=3.8e+02 Score=33.53 Aligned_cols=178 Identities=16% Similarity=0.135 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 49 CLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQF 128 (601)
Q Consensus 49 ~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef 128 (601)
-...|.+++.+++..+..+...+.+++.++..+-....-.... .......-.+|.++...+.+..+...+.. ..+
T Consensus 495 ~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~-~~kv~~~rk~le~~~~d~~~e~~~~~kl~----~~~ 569 (1317)
T KOG0612|consen 495 EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS-LEKVNSLRKQLEEAELDMRAESEDAGKLR----KHS 569 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHhhhhhhhhHHHHhhHh----hhh
Confidence 3456778999999999999999999999988885443322111 00011122334444445555555544443 445
Q ss_pred HHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 036719 129 ADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFG 208 (601)
Q Consensus 129 ~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~ 208 (601)
.++..+|+.+-. +... .. + ....|+.....+....++...=..+.......+..+...+.-+
T Consensus 570 ~e~~~~iq~~~e---~~~~-~~--------d----~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~-- 631 (1317)
T KOG0612|consen 570 KELSKQIQQELE---ENRD-LE--------D----KLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEE-- 631 (1317)
T ss_pred hhhhHHHHHHhh---cccc-HH--------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--
Confidence 555555555443 1111 00 0 2233333333333333333222222222333333333333321
Q ss_pred ccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 036719 209 QTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVV-SLFELWN 267 (601)
Q Consensus 209 ~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~-~l~~LW~ 267 (601)
++-+.+++.++...+.++++++..+.+.+.+... .+...|+
T Consensus 632 ------------------i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e 673 (1317)
T KOG0612|consen 632 ------------------ISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLE 673 (1317)
T ss_pred ------------------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235578888888899999999999888888665 4444443
No 53
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=62.99 E-value=2e+02 Score=30.20 Aligned_cols=85 Identities=16% Similarity=0.289 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC---CCCccccc------ccCccCCCCcHHHHHHHH
Q 036719 102 SLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYD---HLSNSLIN------SLSLEEEDLSLRRITECQ 172 (601)
Q Consensus 102 tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~---~~~~e~l~------~~~~~e~dlS~~~L~~l~ 172 (601)
++.++.+.+...+.+++..+.+=-..+..+...+..+-..+.+.. .++.. +. ...+...+||+..=..+-
T Consensus 59 elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~-ler~i~~Le~~~~T~~L~~e~E~~lv 137 (294)
T COG1340 59 ELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKS-LEREIERLEKKQQTSVLTPEEERELV 137 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHH-HHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 455555566666666655555444444444444444444443221 00000 00 001123467777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 036719 173 THLRTLQKEKSDRLN 187 (601)
Q Consensus 173 ~~L~~Lq~EK~~R~~ 187 (601)
..|..|.+++..+..
T Consensus 138 q~I~~L~k~le~~~k 152 (294)
T COG1340 138 QKIKELRKELEDAKK 152 (294)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776653
No 54
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.56 E-value=3.7e+02 Score=33.59 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 233 TLEGLEHAIVKLKAERKIRIQKLKDIVV 260 (601)
Q Consensus 233 ~L~~L~~~~~~L~e~K~~R~~kl~~L~~ 260 (601)
.+..+..+...|......+.+++.++..
T Consensus 564 ~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 564 ELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444
No 55
>PRK11637 AmiB activator; Provisional
Probab=60.21 E-value=2.7e+02 Score=30.69 Aligned_cols=30 Identities=27% Similarity=0.228 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 233 TLEGLEHAIVKLKAERKIRIQKLKDIVVSL 262 (601)
Q Consensus 233 ~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l 262 (601)
.+..+......|+..+.++...+..|...+
T Consensus 199 ~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~ 228 (428)
T PRK11637 199 LLYEQQAQQQKLEQARNERKKTLTGLESSL 228 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554433
No 56
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=60.09 E-value=1.9e+02 Score=28.80 Aligned_cols=87 Identities=24% Similarity=0.284 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHH
Q 036719 231 NSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTE 310 (601)
Q Consensus 231 ~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~E 310 (601)
..+|.++...+.+|...-..+..++..+...|..+=.....- +..|.. +=+.+..|
T Consensus 121 ~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a---~~~~e~---------------------is~~~k~E 176 (216)
T cd07627 121 ESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASEL---KKEFEE---------------------VSELIKSE 176 (216)
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHH---HHHHHH---------------------HHHHHHHH
Confidence 345555555555554211113455666666665543333211 223333 22456778
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcC
Q 036719 311 VERLTKLKATRMKELVL-------KKRSELEEICKMTH 341 (601)
Q Consensus 311 v~RLe~lK~~~mk~lI~-------k~r~eLeelWd~~~ 341 (601)
|.|.+.-|..=|+..+. ....++.++|..++
T Consensus 177 l~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~ 214 (216)
T cd07627 177 LERFERERVEDFRNSVEIYLESAIESQKELIELWETFY 214 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888777766665543 45668888898653
No 57
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=58.72 E-value=94 Score=29.28 Aligned_cols=63 Identities=30% Similarity=0.398 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHH
Q 036719 51 EVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKK 121 (601)
Q Consensus 51 ~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K 121 (601)
+.+|.+||..+..-.-+-+.....+.|......+..+.. +....|-..|..|...-+.+|.+|
T Consensus 87 ~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEkn--------keK~~Lv~~L~eLv~eSE~~rmKK 149 (159)
T PF04949_consen 87 EMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKN--------KEKAQLVTRLMELVSESERLRMKK 149 (159)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666555555432 123344445555555555555444
No 58
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=58.05 E-value=93 Score=25.59 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHH
Q 036719 14 STSCNALLRELQQIWSDIGESEAEKDRILMELERECLE-VYR-----RKVEEAANAKARLHQTVA 72 (601)
Q Consensus 14 ~~~c~~~l~eL~~IWdEIG~~e~eR~~~l~~le~e~l~-v~~-----~~V~e~~~~k~~L~q~I~ 72 (601)
.++.-++|.-||.=||.|-.+...-.+.+.+..+|+.. +|+ +.|..+-++|+...+.++
T Consensus 3 ~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 3 ATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALA 67 (70)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 56778899999999999988877555556666665433 343 344444444444444443
No 59
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.93 E-value=2.6e+02 Score=29.74 Aligned_cols=88 Identities=10% Similarity=0.042 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CC-ccccCCCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 036719 56 KVEEAANAKARLHQTVAAKEAELATLMAALGELNIH---SP-IQTEKRSTSLKEKLASIAPL--VEDLRTKKEERMKQFA 129 (601)
Q Consensus 56 ~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~---~~-~~~~~~~~tL~eql~~l~~~--le~Lrk~K~eR~~ef~ 129 (601)
+++--.-....|.+.|.+.+.-+..+-.+.-..+.+ .. ...+..-..+..|+..++.+ ++.-..-++=|++-+.
T Consensus 64 ~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~klle 143 (312)
T smart00787 64 LLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLE 143 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566778899999999888888887753321 00 01223344566677766654 6666777788888888
Q ss_pred HHHHHHHHHHHhhC
Q 036719 130 DIKAQIEKISGEIS 143 (601)
Q Consensus 130 ~l~~qi~~L~~eL~ 143 (601)
.++..+..-...|.
T Consensus 144 gLk~~L~~~~~~l~ 157 (312)
T smart00787 144 GLKEGLDENLEGLK 157 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777666553
No 60
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=57.48 E-value=2.1e+02 Score=28.46 Aligned_cols=194 Identities=14% Similarity=0.217 Sum_probs=108.0
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Q 036719 15 TSCNALLRELQQIWSDIGESEAEKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPI 94 (601)
Q Consensus 15 ~~c~~~l~eL~~IWdEIG~~e~eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~ 94 (601)
+.|.++ .=.-|..||++. ||-| -..|+.++..-.+-.+++..+...+..+.
T Consensus 5 ~gCqsa---YY~amEkvG~hK--Rdil------------vdrVe~Ardsq~eaqeQF~sALe~f~sl~------------ 55 (201)
T PF11172_consen 5 TGCQSA---YYSAMEKVGVHK--RDIL------------VDRVEDARDSQQEAQEQFKSALEQFKSLV------------ 55 (201)
T ss_pred HHhHHH---HHHHHHHhCCch--hhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------
Confidence 456654 345677788653 2322 24455555555555555555555544432
Q ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHH
Q 036719 95 QTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTH 174 (601)
Q Consensus 95 ~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~ 174 (601)
+-.++.|....+.+..+++..+..-.+=...+..+...-..|.++-...-..+. ++.. .--|..+|...+.+
T Consensus 56 --~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~----~~sL--R~~S~~kL~~tr~~ 127 (201)
T PF11172_consen 56 --NFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYS----NASL--RRASEQKLAETRRR 127 (201)
T ss_pred --CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CHHH--HHHHHHHHHHHHHH
Confidence 236789999999999999988877654444444444444444443322110010 0100 02266777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 175 LRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQK 254 (601)
Q Consensus 175 L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~k 254 (601)
...|-+-...=..++.-+...+++..-.|.- +|....|..|+..+..++.
T Consensus 128 Y~~L~~aM~~Ae~km~PVL~~~~D~vL~LKH----------------------NLNA~AI~sL~~e~~~~~~-------- 177 (201)
T PF11172_consen 128 YAQLIKAMRRAESKMQPVLAAFRDQVLYLKH----------------------NLNAQAIASLQGEFSSIES-------- 177 (201)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHhc----------------------cccHHHHHHHHHHHHHHHH--------
Confidence 7776666666566666666666666555552 4455677778777655544
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHH
Q 036719 255 LKDIVVSLFELWNLMDSPIQDKNSFSK 281 (601)
Q Consensus 255 l~~L~~~l~~LW~~L~~p~eEr~~F~~ 281 (601)
.|..|=..|..+..|-+.|..
T Consensus 178 ------di~~Li~~m~~sI~ead~FI~ 198 (201)
T PF11172_consen 178 ------DISQLIKEMERSIAEADAFIA 198 (201)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555556566654
No 61
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=57.27 E-value=1.2e+02 Score=27.96 Aligned_cols=113 Identities=14% Similarity=0.192 Sum_probs=70.2
Q ss_pred CCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccccccccCCCccCCCCCCCCCCCHHHHHH
Q 036719 162 DLSLRRITECQTHL----RTLQKEKSDRLNRVLEYVNEVHSICGVLGLD-FGQTVSDVHPSLHGTAMGHSTNISNSTLEG 236 (601)
Q Consensus 162 dlS~~~L~~l~~~L----~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d-~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~ 236 (601)
|+|.++|+.++.+- +-.|.|......|+..+.+.....-..+-.+ +...+.. +|+|.+-- .-+++++++|..
T Consensus 9 disa~~L~glRtqc~~s~eltqqeIr~lE~KLvK~fSkQL~~K~k~~~~~~~~~l~~-yP~l~~WL--~vVgl~~~~i~~ 85 (129)
T PF13543_consen 9 DISAEQLEGLRTQCATSSELTQQEIRTLEGKLVKYFSKQLQCKAKVAERERAAELNS-YPSLRQWL--RVVGLRPESIQA 85 (129)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCchhccc-CCcHHHHh--hhcCCCHHHHHH
Confidence 55666777766664 4455666666777777776665554444432 1111111 35554321 146899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 036719 237 LEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITS 284 (601)
Q Consensus 237 L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~ 284 (601)
+-..+..|.....-...++.++ -+.++...||+..|.....
T Consensus 86 i~~~~~tLe~Llemsd~el~~~-------l~~~g~~~EE~rRL~~Al~ 126 (129)
T PF13543_consen 86 ILSKVLTLEALLEMSDEELKEI-------LNRCGAREEECRRLCRALS 126 (129)
T ss_pred HHHhhcCHHHHHhCCHHHHHHH-------HHHhCCCHHHHHHHHHHHH
Confidence 9777888887766665555543 4457888888888877643
No 62
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=55.95 E-value=3.4e+02 Score=30.47 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCC
Q 036719 303 VIEQASTEVERLTKLKATRM---KELVLKKRSELEEICKMTHIE 343 (601)
Q Consensus 303 ~I~~le~Ev~RLe~lK~~~m---k~lI~k~r~eLeelWd~~~~~ 343 (601)
-++.++.|+..|.-+-...| ..+|.+.+-++.++-..|.+-
T Consensus 534 E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~ 577 (622)
T COG5185 534 EIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRK 577 (622)
T ss_pred HHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 56788888888776554443 456777777777777666553
No 63
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.71 E-value=3.7e+02 Score=30.86 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Q 036719 232 STLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQ 274 (601)
Q Consensus 232 ~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~e 274 (601)
++|+.+...+..++.+-.....+++..+..-.++|..++...+
T Consensus 453 ~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e 495 (581)
T KOG0995|consen 453 STIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIE 495 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777777778888888888765433
No 64
>PLN03188 kinesin-12 family protein; Provisional
Probab=54.52 E-value=5.5e+02 Score=32.49 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=46.0
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccC----ccccCCCCCCcHHHHH
Q 036719 235 EGLEHAIVKLK-----AERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLS----ESEITEPGVLSTEVIE 305 (601)
Q Consensus 235 ~~L~~~~~~L~-----e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s----~~~~~~~~~LS~~~I~ 305 (601)
.+++..+..++ .+|.-.++.|++|+.+|+.+-+---.+.--+....+.+....++ ..-|++.. +...
T Consensus 970 ~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~----~~~~ 1045 (1320)
T PLN03188 970 KRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPEST----DESP 1045 (1320)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCcccccccccccccc----ccch
Confidence 34444444432 45566667888888877765222111111111222222222222 11111111 2233
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHc
Q 036719 306 QASTEVERLTKLKATR--MKELVLKKRSELEEICKMT 340 (601)
Q Consensus 306 ~le~Ev~RLe~lK~~~--mk~lI~k~r~eLeelWd~~ 340 (601)
..+.|.+|+.-++++. |- +...+|.||+. |..+
T Consensus 1046 e~~l~~er~~w~e~es~wis-lteelr~eles-~r~l 1080 (1320)
T PLN03188 1046 EKKLEQERLRWTEAESKWIS-LAEELRTELDA-SRAL 1080 (1320)
T ss_pred hHHHHHHHHHHHHHhhhhee-chHHHHHHHHH-HHHH
Confidence 4555666666555442 22 34677888877 6543
No 65
>COG5293 Predicted ATPase [General function prediction only]
Probab=54.32 E-value=3.2e+02 Score=30.51 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036719 21 LRELQQIWSDIGES--EAEKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAAL 85 (601)
Q Consensus 21 l~eL~~IWdEIG~~--e~eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eL 85 (601)
+.+.+.+++++|.- ..-+. .+ .++..+|+.++++ ..+-+..+|+..+..|..+-..+
T Consensus 300 pd~i~~~ye~vg~~fpg~Vkk----~~-e~v~~F~r~~~e~---R~~yl~~ei~~i~~dLk~~n~~~ 358 (591)
T COG5293 300 PDEIQVLYEEVGVLFPGQVKK----DF-EHVIAFNRAITEE---RHDYLQEEIAEIEGDLKEVNAEL 358 (591)
T ss_pred hHHHHHHHHHhhhcChHHHHH----hH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999864 33221 22 3577889999887 44556666666665555444333
No 66
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=53.34 E-value=5.6e+02 Score=32.28 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhHHHHHHHHHcCCccccccCCCccccchHHHHHHHhhhh-hHHHHHHHHH
Q 036719 370 NIEAQIVKVKDEALSRKDI-MDRIDRWLYACEEEKWLEEYNQDDNRYNAGRGAHINLKRAERARVTVSK-IPAIVDNLIN 447 (601)
Q Consensus 370 ~~E~eI~~lke~~~~~k~I-l~~vekw~~l~~e~~~LE~~~~D~~R~~~~RG~h~~LlreEK~Rk~i~K-lPkl~~~L~~ 447 (601)
..+..|..++.......+| +..++.|...-+....|.. .+-.-+++++.|.. +-.+-...+.
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~----------------~~~dl~~a~~~l~~~i~~~d~~~~~ 1009 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKS----------------QREDLEEAKEKLLEVIEELDKEKRE 1009 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777664444443 3444444333332222222 33345556666654 6666665554
Q ss_pred HH
Q 036719 448 RT 449 (601)
Q Consensus 448 ~l 449 (601)
.+
T Consensus 1010 ~f 1011 (1163)
T COG1196 1010 RF 1011 (1163)
T ss_pred HH
Confidence 43
No 67
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=52.52 E-value=2.9e+02 Score=32.78 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 163 LSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSI 199 (601)
Q Consensus 163 lS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L 199 (601)
.+.++++.|+..+..|+.+...=...+..+-..|..+
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999877777777777666654
No 68
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.09 E-value=1.9e+02 Score=26.37 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 52 VYRRKVEEAANAKARLHQTVAAKEAELATL 81 (601)
Q Consensus 52 v~~~~V~e~~~~k~~L~q~I~~~~~El~~L 81 (601)
.++..+......|+.+-++|-.+..+...+
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544444443
No 69
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=52.07 E-value=2.7e+02 Score=28.23 Aligned_cols=83 Identities=25% Similarity=0.270 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHH
Q 036719 164 SLRRITECQTHL-RTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIV 242 (601)
Q Consensus 164 S~~~L~~l~~~L-~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~ 242 (601)
..++|++.-..+ ..+..|+..|...+.++.+.|..++..=... .-.+..-+++.|.....
T Consensus 151 i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~-------------------~e~f~~~v~~Ei~~lk~ 211 (247)
T PF06705_consen 151 ILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKG-------------------DEQFQNFVLEEIAALKN 211 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hHHHHHHHHHHHHHHHH
Confidence 455566444443 4678999999999999999999887633211 11345568889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036719 243 KLKAERKIRIQKLKDIVVSLFEL 265 (601)
Q Consensus 243 ~L~e~K~~R~~kl~~L~~~l~~L 265 (601)
.|..+...|...=.++...|..+
T Consensus 212 ~l~~e~~~R~~~Dd~Iv~aln~y 234 (247)
T PF06705_consen 212 ALALESQEREQSDDDIVQALNHY 234 (247)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999988866666555544
No 70
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.99 E-value=75 Score=23.74 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036719 44 ELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGE 87 (601)
Q Consensus 44 ~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~ 87 (601)
|+|++| ++++.-.+.....-+.|.++.+.+++++..|-..|+.
T Consensus 2 QlE~Dy-~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~ 44 (45)
T PF02183_consen 2 QLERDY-DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQM 44 (45)
T ss_pred chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 566666 6777888888888899999999999999988877653
No 71
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.80 E-value=1.9e+02 Score=29.22 Aligned_cols=45 Identities=20% Similarity=0.091 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Q 036719 232 STLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDK 276 (601)
Q Consensus 232 ~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr 276 (601)
+.|..|.....+|++....+.-++..|.....+|-..+..|.+++
T Consensus 170 erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 170 ERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 567778888888888888887788888888888888888877654
No 72
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=50.70 E-value=2.4e+02 Score=29.84 Aligned_cols=66 Identities=20% Similarity=0.284 Sum_probs=44.7
Q ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHH
Q 036719 40 RILMELERECL---------EVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLAS 109 (601)
Q Consensus 40 ~~l~~le~e~l---------~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~ 109 (601)
+++.+||+.+| -.|+++|.+.+..|..|-.+++.+.--.........-.=-. ....-+|.+++|..
T Consensus 42 qTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD----~nDkvMPVKqWLEE 116 (351)
T PF07058_consen 42 QTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKD----ENDKVMPVKQWLEE 116 (351)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccc----cCCccccHHHHHHH
Confidence 45566665444 36899999999999999999988877666655533322111 33467899888753
No 73
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.60 E-value=2.9e+02 Score=28.13 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=44.0
Q ss_pred HHhhhhHHHHHHHHHHHHhHHHHHHHHHcCCccccccCCCccccchHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH
Q 036719 381 EALSRKDIMDRIDRWLYACEEEKWLEEYNQDDNRYNAGRGAHINLKRAERARVTVSK-IPAIVDNLINRTLAWEEE 455 (601)
Q Consensus 381 ~~~~~k~Il~~vekw~~l~~e~~~LE~~~~D~~R~~~~RG~h~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e 455 (601)
....|+-|=..+++++. |+.+.=.-.||+.. . +.+. .+-..+++|.-+.. |-..++.|..++..||.+
T Consensus 76 L~e~Rk~IE~~MErFK~-vEkesKtKafSkeG---L-~~~~--k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E 144 (233)
T PF04065_consen 76 LLENRKLIEEQMERFKV-VEKESKTKAFSKEG---L-MAAS--KLDPKEKEKEEARDWLKDSIDELNRQIEQLEAE 144 (233)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhcccccchhh---h-hccc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777733 33333344444432 1 1222 44567888888887 999999999999999987
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.67 E-value=4e+02 Score=29.51 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHH
Q 036719 105 EKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSD 184 (601)
Q Consensus 105 eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~ 184 (601)
++++.+...++.+.+...+-.+++..+..+|..+-.+|......+-. ..++-+=...+|..+...+..|+.++..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~-----s~~~l~~~~~~I~~~~~~l~~l~~q~r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE-----TADDLKKLRKQIADLNARLNALEVQERE 112 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 56677777777777766666666666666666666655433221110 0011122467788888888999888866
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Q 036719 185 RLNRVLEYVNEVHSICGVLGLDF 207 (601)
Q Consensus 185 R~~kv~~l~~~I~~L~~~Lg~d~ 207 (601)
|...+. .+..-...+|.++
T Consensus 113 qr~~La----~~L~A~~r~g~~p 131 (420)
T COG4942 113 QRRRLA----EQLAALQRSGRNP 131 (420)
T ss_pred HHHHHH----HHHHHHHhccCCC
Confidence 664444 4444455667654
No 75
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=49.51 E-value=1.8e+02 Score=32.44 Aligned_cols=128 Identities=18% Similarity=0.188 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036719 173 THLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRI 252 (601)
Q Consensus 173 ~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~ 252 (601)
..+.+||. |..+.+.|.++++.+..=+..|=.|-...+-|- ++... ..---.++++.-++.++.-..+|..-+
T Consensus 345 ~kvkeLQ~-k~~kQqvfvDiinkLk~niEeLIedKY~viLEK----nd~~k--~lqnLqe~la~tqk~LqEsr~eKetLq 417 (527)
T PF15066_consen 345 KKVKELQM-KITKQQVFVDIINKLKENIEELIEDKYRVILEK----NDIEK--TLQNLQEALANTQKHLQESRNEKETLQ 417 (527)
T ss_pred HHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhh----hhHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44445543 344566666676666666666654432222110 00000 000011233333444444445555555
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 036719 253 QKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATR 321 (601)
Q Consensus 253 ~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~ 321 (601)
-++..+...-..|=++--+...+++.|.+..--+ ..++.+-+.||+||+.+|...
T Consensus 418 lelkK~k~nyv~LQEry~~eiQqKnksvsqclEm--------------dk~LskKeeeverLQ~lkgel 472 (527)
T PF15066_consen 418 LELKKIKANYVHLQERYMTEIQQKNKSVSQCLEM--------------DKTLSKKEEEVERLQQLKGEL 472 (527)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHhhhhHHHHHHHHHHHHHH
Confidence 5566666666667676666677788887765432 567888899999999999774
No 76
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=49.30 E-value=50 Score=35.80 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCc--c-cccccCccCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 036719 109 SIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSN--S-LINSLSLEEEDLSLRRITECQTHLRTLQKEKSDR 185 (601)
Q Consensus 109 ~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~--e-~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R 185 (601)
.-+.+++.|+..+..=-..+.+++.++.+|..+|+..-..|. + .++ ..-......+...+..|...+.++...
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN----~qle~l~~eYr~~~~~ls~~~~~y~~~ 292 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN----NQLEPLIQEYRSAQDELSEVQEKYKQA 292 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888888888888888888888888875532211 0 010 111234566777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 036719 186 LNRVLEYVNEVHSICGVLG 204 (601)
Q Consensus 186 ~~kv~~l~~~I~~L~~~Lg 204 (601)
-..|.++..++..|...|.
T Consensus 293 s~~V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 293 SEGVSERTRELAEISEELE 311 (359)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888776
No 77
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=48.75 E-value=4.7e+02 Score=30.07 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHH--
Q 036719 41 ILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLR-- 118 (601)
Q Consensus 41 ~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr-- 118 (601)
++..++.+ +..+..++++.=..-..+...+=+-..+|..=+..|-..-|. . ....+...+..+..++....
T Consensus 199 ~l~~l~~~-~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~----~--~~~~i~~~i~~l~~~i~~~~~~ 271 (569)
T PRK04778 199 ILDQLEEE-LAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYH----L--DHLDIEKEIQDLKEQIDENLAL 271 (569)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC----C--CCCChHHHHHHHHHHHHHHHHH
Confidence 45555444 344455555544444444444444455555556666655554 1 22334444444444444411
Q ss_pred --HH-HHHHHHHHHHHHHHHHHHHHhhC
Q 036719 119 --TK-KEERMKQFADIKAQIEKISGEIS 143 (601)
Q Consensus 119 --k~-K~eR~~ef~~l~~qi~~L~~eL~ 143 (601)
.- ...=-..+..+..+|..|++.|.
T Consensus 272 l~~l~l~~~~~~~~~i~~~Id~Lyd~le 299 (569)
T PRK04778 272 LEELDLDEAEEKNEEIQERIDQLYDILE 299 (569)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11223455566677777776664
No 78
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.38 E-value=3.2e+02 Score=31.50 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhCCC
Q 036719 164 SLRRITECQTHLRTLQKEK--------SDRLNRVLEYVNEVHSICGVLGLD 206 (601)
Q Consensus 164 S~~~L~~l~~~L~~Lq~EK--------~~R~~kv~~l~~~I~~L~~~Lg~d 206 (601)
+...++.|+.++..++.++ ..|.+....+-..|..-+..|+|.
T Consensus 340 ~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me 390 (557)
T COG0497 340 SEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKALAME 390 (557)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444555556666665554 568888889999999999999997
No 79
>PRK09039 hypothetical protein; Validated
Probab=48.05 E-value=3.8e+02 Score=28.79 Aligned_cols=105 Identities=11% Similarity=0.165 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036719 64 KARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEIS 143 (601)
Q Consensus 64 k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~ 143 (601)
-..+-++++.+..+|+.|-..|+..-. ....|-+.+..++.+++.++..+. .++..+.. ..
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~--------~~~~l~~~l~~l~~~l~~a~~~r~-------~Le~~~~~----~~ 108 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQ--------GNQDLQDSVANLRASLSAAEAERS-------RLQALLAE----LA 108 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHhh----hh
Confidence 344566777777777777777777532 335666777777777776666553 22222221 10
Q ss_pred CCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 144 GYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGV 202 (601)
Q Consensus 144 ~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~ 202 (601)
. ....-..++..+...|...+.+.++-...|.-+..+|..|=..
T Consensus 109 ~---------------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 109 G---------------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred h---------------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0 1122456677778888888888888887788777777777555
No 80
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.02 E-value=6.1e+02 Score=31.17 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhh
Q 036719 307 ASTEVERLTKLKATRMKELVLKKRSELEEICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRK 386 (601)
Q Consensus 307 le~Ev~RLe~lK~~~mk~lI~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k 386 (601)
+..|++++...|... .++|.|+.+--+.++..|.. +| .- +. +..+.+|+..+..=...|+.+-..+|
T Consensus 907 ~dKe~Ek~~~rk~~L-----l~KreE~~ekIr~lG~Lp~d--af----~k-y~-~~~~~el~kkL~~~neelk~ys~VNK 973 (1200)
T KOG0964|consen 907 FDKELEKLVRRKHML-----LKKREECCEKIRELGVLPED--AF----EK-YQ-DKKSKELMKKLHRCNEELKGYSNVNK 973 (1200)
T ss_pred hhHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCchH--HH----HH-hc-cCCHHHHHHHHHHHHHHHhhcchhhH
Confidence 446666666555443 45777777777777888642 22 22 33 35788998888888888888888888
Q ss_pred HHHHHHHHH
Q 036719 387 DIMDRIDRW 395 (601)
Q Consensus 387 ~Il~~vekw 395 (601)
--|+-+..+
T Consensus 974 kAldQf~nf 982 (1200)
T KOG0964|consen 974 KALDQFVNF 982 (1200)
T ss_pred HHHHHHHHH
Confidence 766544433
No 81
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=47.75 E-value=4.9e+02 Score=29.92 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=47.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHhHHHHHHHHHcCCccccccCCCccccchHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH
Q 036719 379 KDEALSRKDIMDRIDRWLYACEEEKWLEEYNQDDNRYNAGRGAHINLKRAERARVTVSK-IPAIVDNLINRTLAWEEE 455 (601)
Q Consensus 379 ke~~~~~k~Il~~vekw~~l~~e~~~LE~~~~D~~R~~~~RG~h~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e 455 (601)
.....-|+=|=..+++++. |+.+.=-..+++- |=|..-.|-..||++.-+.- |--++++|-..+..+|.+
T Consensus 74 ~~L~d~RrlIE~~MErfK~-vEke~KtKa~Ske------gL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~ 144 (575)
T KOG2150|consen 74 DSLLDNRRLIEQRMERFKA-VEKEMKTKAFSKE------GLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAE 144 (575)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhccccchh------hccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666667777743 3333333344432 34445578889999988876 999999999999999983
No 82
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=46.25 E-value=4.1e+02 Score=28.57 Aligned_cols=299 Identities=15% Similarity=0.114 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---Ccc----------ccCCCCcHHHHHHHHHHHHH
Q 036719 49 CLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHS---PIQ----------TEKRSTSLKEKLASIAPLVE 115 (601)
Q Consensus 49 ~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~---~~~----------~~~~~~tL~eql~~l~~~le 115 (601)
...+|....++.-. +. ...+..+-.++......|++|-... .+. ......++...+..+.....
T Consensus 7 a~S~YsE~ka~lvr--~e-~~~~e~a~~~~~~~L~~lnLP~sL~~l~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~l~~ 83 (356)
T cd09237 7 KESLYSEEKAKLLR--AE-VERVEVANEEYASFLEYLNLPKLLVDLKERFEGENELMEIVSGLKSSSVDSQLELLRPQSA 83 (356)
T ss_pred HHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHcCCcHHHHHHhhhcCCchhHHHHHHhccCCCcchhHHHhHHHHH
Confidence 45677766554332 22 4778888899999999999974220 000 00111123333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 116 DLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSL---RRITECQTHLRTLQKEKSDRLNRVLEY 192 (601)
Q Consensus 116 ~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~---~~L~~l~~~L~~Lq~EK~~R~~kv~~l 192 (601)
.......+-...+..=..++..+-..++. .+... +...++. .++..|+..|..-.. -=.+|...
T Consensus 84 ~~~~~l~~~~~~L~~E~~ed~~~R~k~g~-~Wtr~--------~S~~~~~~l~~~~~k~~~~L~~A~~----SD~~l~~~ 150 (356)
T cd09237 84 SWVNEIDSSYNDLDEEMKEIEKMRKKILA-KWTQS--------PSSSLTASLREDLVKLKKSLVEASA----SDEKLFSL 150 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccc--------cchhhhHHHHHHHHHHHHHHHHHHh----hHHHHHHH
Confidence 44444444444444444555555555554 23211 1112222 333344433333222 12234556
Q ss_pred HHHHHHHHHHhCCCccccccccC--C-------CccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 193 VNEVHSICGVLGLDFGQTVSDVH--P-------SLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLF 263 (601)
Q Consensus 193 ~~~I~~L~~~Lg~d~~~~v~ev~--~-------sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~ 263 (601)
...+......|+.+... +.... | ++.+....+...--...+..|+..+.+|+..|.+|...+.+|+.+++
T Consensus 151 ~~~~~~~l~lL~~~~~~-l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~ 229 (356)
T cd09237 151 VDPVKEDIALLLNGGSL-WEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIH 229 (356)
T ss_pred HHHHHHHHHHHcCChHH-HHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666667544321 11111 1 22211110000001346899999999999999999999999988765
Q ss_pred HHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 036719 264 ELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELVLKKRSELEEICKMTHIE 343 (601)
Q Consensus 264 ~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~k~r~eLeelWd~~~~~ 343 (601)
. -||. ..|...... .+.. -..|...-|..+.--..+|.+..... ..+-.+|...|+.+.-.
T Consensus 230 ~----DDI~----~~ll~~~~~----~~~~--~e~lF~~eL~kf~p~~~~l~~~~~~Q-----~~ll~el~~~~~~f~~~ 290 (356)
T cd09237 230 N----DDIS----DILILNSKS----KSEI--EKQLFPEELEKFKPLQNRLEATIFKQ-----SSLINELKIELDKLFKL 290 (356)
T ss_pred c----cchH----HHHHHhccc----ccch--HHHHHHHHHHHcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhC
Confidence 2 2221 112211100 0000 01122223334444444444444333 23345677777766433
Q ss_pred ccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 036719 344 PDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDR 394 (601)
Q Consensus 344 ~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vek 394 (601)
..-+... .-.+......+..+.+++.-|..+++|...+.+
T Consensus 291 ~~~~~~~-----------~~~~~~~~~R~~~l~~l~~ay~~y~el~~~l~~ 330 (356)
T cd09237 291 PGVKEKQ-----------SKEKSKQKLRKEFFEKLKKAYNSFKKFSAGLPK 330 (356)
T ss_pred ccHhhhh-----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 2211000 012344566666677777766666666555543
No 83
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.73 E-value=6.8e+02 Score=31.03 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccchHHHhhhhhhhcCCC-------------CCcHHHHHHHHHHHHHHHHHHhhhhHH
Q 036719 322 MKELVLKKRSELEEICKMTHIEPDTSTAAEKSNAMIDSGL-------------VDPSELLANIEAQIVKVKDEALSRKDI 388 (601)
Q Consensus 322 mk~lI~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~-------------~~~eelL~~~E~eI~~lke~~~~~k~I 388 (601)
+...|+++..++..|-..|-++. +.-|+-+|. ..+.++. +...|....+......|-
T Consensus 882 ~es~ie~~~~er~~lL~~ckl~~--------I~vPl~~gs~~d~~~~ieidy~~L~~~y~--L~~kl~e~~~~l~~~~Pn 951 (1141)
T KOG0018|consen 882 IESKIERKESERHNLLSKCKLED--------IEVPLSSGSMDDIVIGIEIDYSGLPREYK--LQQKLEEKQSVLNRIAPN 951 (1141)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcc--------ccccccCCCccccceecccccccccHHHH--HHHHHHHHHHHHHHhCcc
Confidence 45667888888888888887652 111111110 1234444 666677777777777777
Q ss_pred HHHHHHHHHH
Q 036719 389 MDRIDRWLYA 398 (601)
Q Consensus 389 l~~vekw~~l 398 (601)
+..+++...+
T Consensus 952 ~kA~~~~d~v 961 (1141)
T KOG0018|consen 952 LKALERLDEV 961 (1141)
T ss_pred hHHHhhhhhH
Confidence 7777777444
No 84
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=43.76 E-value=4.5e+02 Score=31.30 Aligned_cols=148 Identities=17% Similarity=0.210 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 255 LKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELVLKKRSELE 334 (601)
Q Consensus 255 l~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~k~r~eLe 334 (601)
+..++.+|..||.-.+.+.+- .+..+... .-+..+....+.+..+|-+| |.|+.-+|..|.
T Consensus 547 ~~~irdQikhL~~av~~t~e~--srq~~~~~---------~~~~~~d~d~e~l~eqilKL--------KSLLSTKREQIa 607 (717)
T PF09730_consen 547 VAIIRDQIKHLQRAVDRTTEL--SRQRVASR---------SSASEADKDKEELQEQILKL--------KSLLSTKREQIA 607 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--Hhhhcccc---------ccCCcccccHHHhHHHHHHH--------HHHHHHHHHHHH
Confidence 334667777777666544332 11111100 01223455667777777665 445556666666
Q ss_pred HHHHHcCCCccc-hHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHH-HHHHcCCc
Q 036719 335 EICKMTHIEPDT-STAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDRWLYACEEEKW-LEEYNQDD 412 (601)
Q Consensus 335 elWd~~~~~~e~-~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~e~~~-LE~~~~D~ 412 (601)
.|-..+---... ..+--+.-.-|++.-.-..+.+..+..|++.||+.++....+-..+..+ |+|..- |++..+
T Consensus 608 TLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~R---CdEYvtQldemqr-- 682 (717)
T PF09730_consen 608 TLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAAR---CDEYVTQLDEMQR-- 682 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--
Confidence 665555332110 0011122333444334567888999999999999998888777777666 666443 665532
Q ss_pred cccccCCCccccchHHHHHHHhhhh
Q 036719 413 NRYNAGRGAHINLKRAERARVTVSK 437 (601)
Q Consensus 413 ~R~~~~RG~h~~LlreEK~Rk~i~K 437 (601)
.|--+|-+.|.+|-
T Consensus 683 -----------qL~aAEdEKKTLNs 696 (717)
T PF09730_consen 683 -----------QLAAAEDEKKTLNS 696 (717)
T ss_pred -----------HHHHhHHHHHHHHH
Confidence 45556667777776
No 85
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=43.71 E-value=4.3e+02 Score=28.16 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=62.8
Q ss_pred HHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCc
Q 036719 79 ATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSL 158 (601)
Q Consensus 79 ~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~ 158 (601)
..+....|..+.. ..-..+|...+..++..++....-=..=...|.....-+.-||.....-...++ .+..
T Consensus 110 ~~~R~k~G~~~~S-----~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iP----s~~~ 180 (337)
T cd09234 110 KEFQEAVGKRGSS-----IAHVTELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKLP----SPSL 180 (337)
T ss_pred HHHHHHcCCCCCc-----hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhCC----Cccc
Confidence 3445566654321 123567888888999888888776544445555555555555432110000011 1111
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 159 EEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVH 197 (601)
Q Consensus 159 ~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~ 197 (601)
.+.+-....+..|+..+..+..-+.+|...+.++...++
T Consensus 181 ~~~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 181 LDRPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111123456778888888888888899887777766554
No 86
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.41 E-value=7.2e+02 Score=30.68 Aligned_cols=36 Identities=31% Similarity=0.171 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 300 STEVIEQASTEVERLTKLKATRMKELVLKKRSELEEI 336 (601)
Q Consensus 300 S~~~I~~le~Ev~RLe~lK~~~mk~lI~k~r~eLeel 336 (601)
+...+..++.||.+++.-++..-++ |.++..+.+-|
T Consensus 904 ~~l~~kkle~e~~~~~~e~~~~~k~-v~~l~~k~~wi 939 (1174)
T KOG0933|consen 904 GELERKKLEHEVTKLESEKANARKE-VEKLLKKHEWI 939 (1174)
T ss_pred ccchHHHHHhHHHHhhhhHHHHHHH-HHHHHHhccch
Confidence 3558899999999999999887554 55665555433
No 87
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=43.18 E-value=9.6e+02 Score=32.05 Aligned_cols=149 Identities=16% Similarity=0.219 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 53 YRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIK 132 (601)
Q Consensus 53 ~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~ 132 (601)
+...+++....++.+...-..++.++.+++.+++.-.... ...+.....+-.++..+...++.+.....+-..+...++
T Consensus 1194 l~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k-~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~ 1272 (1930)
T KOG0161|consen 1194 LQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEK-KDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQ 1272 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567888888889999999999999999999998644321 012223334445666666666666665544344444444
Q ss_pred HHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 036719 133 AQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDF 207 (601)
Q Consensus 133 ~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~ 207 (601)
++...+...+......+. ......---..+|+.++.++..-.+++......+..+...+..|-..|..+.
T Consensus 1273 ~E~~~l~~~lee~e~~~~-----~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~ 1342 (1930)
T KOG0161|consen 1273 NENEELSRQLEEAEAKLS-----ALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQ 1342 (1930)
T ss_pred hhHHHHhhHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443332211100 0000000114567778888888888888888888888888888888887654
No 88
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.23 E-value=49 Score=31.55 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=36.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 036719 162 DLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLG 204 (601)
Q Consensus 162 dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg 204 (601)
++|.+.+..+...+..|+.+...-...+..+..++..|...+-
T Consensus 68 ~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t 110 (169)
T PF07106_consen 68 VPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT 110 (169)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6789999999999999999998888888888888888877664
No 89
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=42.23 E-value=4.6e+02 Score=28.03 Aligned_cols=187 Identities=15% Similarity=0.185 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 52 VYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADI 131 (601)
Q Consensus 52 v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l 131 (601)
-|+.|+++.......+.....++.- -+..-|.+.+. +.....+|-+.+...+.+...|...-.+-.+.+.++
T Consensus 27 qyKlMAEqLqer~q~LKkk~~el~~----~~~~~~d~~~~----~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 27 QYKLMAEQLQERYQALKKKYRELIQ----EAAGFGDPSIP----PEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----hhcccCCccCC----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444444444433222 13333444444 444556776666655555555555555555555555
Q ss_pred HHHHHHHHHhhCCCCC---CCcccccccCccCCCCcHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 132 KAQIEKISGEISGYDH---LSNSLINSLSLEEEDLSLRRITE-------CQTHLRTLQKEKSDRLNRVLEYVNEVHSICG 201 (601)
Q Consensus 132 ~~qi~~L~~eL~~~~~---~~~e~l~~~~~~e~dlS~~~L~~-------l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~ 201 (601)
+.+|.-|-..+..... .++. -.++ .+.-=-..+|+. |+..+..+-.||.+=...-..|...++.|-.
T Consensus 99 qGD~KlLR~~la~~r~~~~~~~~-~~~~--~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ 175 (319)
T PF09789_consen 99 QGDIKLLREKLARQRVGDEGIGA-RHFP--HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNH 175 (319)
T ss_pred hchHHHHHHHHHhhhhhhccccc-cccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444432211 1110 0000 000001122333 3333334444555555555566666666666
Q ss_pred HhCCCccccccccCCCccCCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 202 VLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTL----EGLEHAIVKLKAERKIRIQKLKDIVVSLF 263 (601)
Q Consensus 202 ~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L----~~L~~~~~~L~e~K~~R~~kl~~L~~~l~ 263 (601)
+|..-... -.+..+.-+.| ..|+..+..+++++.--...+..|...+.
T Consensus 176 ELn~~L~g--------------~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 176 ELNYILNG--------------DENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHhCC--------------CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65421110 00112222222 46677777777777666666666655554
No 90
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=41.90 E-value=4.7e+02 Score=28.09 Aligned_cols=197 Identities=11% Similarity=0.114 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-ccccCCCCcHHHHHHHHH---------HHHHHHH
Q 036719 49 CLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSP-IQTEKRSTSLKEKLASIA---------PLVEDLR 118 (601)
Q Consensus 49 ~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~-~~~~~~~~tL~eql~~l~---------~~le~Lr 118 (601)
...+|+...++. .++.+...|..+-.++......|++|..... ..+..-+.+|.+.-..++ ..+.+|.
T Consensus 7 a~s~Y~erk~~l--Vr~~~~~~le~~~~~l~~~L~slnLP~sl~~l~~~~~lP~sl~~~~~~v~~~~g~~~l~~~l~~l~ 84 (353)
T cd09236 7 AISIYDDRKDRL--VNESIIDELEELTNRAHSTLRSLNLPGSLQALEKPLGLPPSLLRHAEEIRQEDGLERIRASLDDVA 84 (353)
T ss_pred HHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHhCCCcHHHHHhhCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456777665543 3444567888888899999999998753200 001112233444333222 3333333
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHhh----CCCCCCCcccccccCccCCCCc---HHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 119 TKKE---ERMKQFADIKAQIEKISGEI----SGYDHLSNSLINSLSLEEEDLS---LRRITECQTHLRTLQKEKSDRLNR 188 (601)
Q Consensus 119 k~K~---eR~~ef~~l~~qi~~L~~eL----~~~~~~~~e~l~~~~~~e~dlS---~~~L~~l~~~L~~Lq~EK~~R~~k 188 (601)
+.+. +-+.+...+......=|..+ |...+... +...++ ..++..|+..|+.-. .++ ..
T Consensus 85 ~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~--------~S~~~~~~l~~~~~~~~~~L~~A~--~sD--~~ 152 (353)
T cd09236 85 RLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRP--------DSHEANPKLYTQAAEYEGYLKQAG--ASD--EL 152 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHHH--hhH--HH
Confidence 3332 22222222222222222222 21122111 111122 234444444444221 122 23
Q ss_pred HHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 189 VLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLF 263 (601)
Q Consensus 189 v~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~ 263 (601)
|......+......|..+... +....|+...... + .-....+..|+..+.+|...+.+|...+.+|+.++.
T Consensus 153 v~~k~~~~~~~l~lL~~~~~~-l~~~~Ps~~~~~~--~-~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~ 223 (353)
T cd09236 153 VRRKLDEWEDLIQILTGDERD-LENFVPSSRRPSI--P-PELERHVRALRVSLEELDRLESRRRRKVERARTKAR 223 (353)
T ss_pred HHHHHHHHHHHHHHHcCCHHH-HHHhCCCCCCCCC--C-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777655432 2233454321111 1 112467999999999999999999999999988765
No 91
>PRK10869 recombination and repair protein; Provisional
Probab=41.48 E-value=6e+02 Score=29.19 Aligned_cols=201 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHH
Q 036719 103 LKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEK 182 (601)
Q Consensus 103 L~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK 182 (601)
..+.+..+...++.++....++.+++.-++.|++.| +..+|.....++|. +.
T Consensus 162 ~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei--------------------~~~~l~~gE~eeL~--------~e 213 (553)
T PRK10869 162 AYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL--------------------NEFAPQPGEFEQID--------EE 213 (553)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------------------HhCCCCCCcHHHHH--------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 183 SDRLNRVLEYVNEVHSICGVLGL-DFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVS 261 (601)
Q Consensus 183 ~~R~~kv~~l~~~I~~L~~~Lg~-d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~ 261 (601)
-.|+.....+.+.+......|.- + ....++.|...+..|... ..--..+..+...
T Consensus 214 ~~~L~n~e~i~~~~~~~~~~L~~~~-----------------------~~~~~~~l~~~~~~l~~~-~~~d~~~~~~~~~ 269 (553)
T PRK10869 214 YKRLANSGQLLTTSQNALQLLADGE-----------------------EVNILSQLYSAKQLLSEL-IGMDSKLSGVLDM 269 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-----------------------cccHHHHHHHHHHHHHHH-hhhCHhHHHHHHH
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 036719 262 LFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATR------MKELVLKKRSELEE 335 (601)
Q Consensus 262 l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~------mk~lI~k~r~eLee 335 (601)
+..+...|+--..+-..+..... +...-++.++.-+..|..||+.. +-.+..+.+.+|..
T Consensus 270 l~~~~~~l~~~~~~l~~~~~~~~--------------~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~ 335 (553)
T PRK10869 270 LEEALIQIQEASDELRHYLDRLD--------------LDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQ 335 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC--------------CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 036719 336 ICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDR 394 (601)
Q Consensus 336 lWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vek 394 (601)
....++.++.++.++..+++.+.....-+...-+
T Consensus 336 -------------------------L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 336 -------------------------LDDQEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred -------------------------hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 92
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=41.32 E-value=5.4e+02 Score=30.75 Aligned_cols=163 Identities=19% Similarity=0.185 Sum_probs=92.3
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhCC
Q 036719 14 STSCNALLRELQQIWSDIGESEAEKDRILMELERECLEVYRRKVEEAAN------AKARLHQTVAAKEAELATLMAALGE 87 (601)
Q Consensus 14 ~~~c~~~l~eL~~IWdEIG~~e~eR~~~l~~le~e~l~v~~~~V~e~~~------~k~~L~q~I~~~~~El~~L~~eLg~ 87 (601)
-.|...||.+|+.+-.+.|.++.+|. +.++| +|..++=.++...+- .-.-|.-+.+.++..|.-|-..|-+
T Consensus 336 Vrt~KYLLgELkaLVaeq~DsE~qRL--itEvE-~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 336 VRTLKYLLGELKALVAEQEDSEVQRL--ITEVE-ACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHH--HHHHH-HHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 35677899999999999988888775 34553 377766332222111 1223444555555555555555544
Q ss_pred CCCCC--Cc---------cccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccccc
Q 036719 88 LNIHS--PI---------QTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSL 156 (601)
Q Consensus 88 ~~~~~--~~---------~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~ 156 (601)
..-.. .+ ....-.++|-.|+......+|.|+.+-++-++.+...+.+=.+|...+......
T Consensus 413 qe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~-------- 484 (861)
T PF15254_consen 413 QEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQE-------- 484 (861)
T ss_pred HHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 22110 00 001123456677777777778888777777777777777777777666443221
Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 157 SLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVN 194 (601)
Q Consensus 157 ~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~ 194 (601)
..+.-..|..+...+..|.++-+..|..+.-
T Consensus 485 -------l~~~kq~~d~e~~rik~ev~eal~~~k~~q~ 515 (861)
T PF15254_consen 485 -------LLENKQQFDIETTRIKIEVEEALVNVKSLQF 515 (861)
T ss_pred -------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222234555566666666666655554443
No 93
>PRK03918 chromosome segregation protein; Provisional
Probab=40.94 E-value=7.2e+02 Score=29.93 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=17.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhhhH
Q 036719 362 VDPSELLANIEAQIVKVKDEALSRKD 387 (601)
Q Consensus 362 ~~~eelL~~~E~eI~~lke~~~~~k~ 387 (601)
.+..+++..++.+|..+...+..-+.
T Consensus 448 ~~~~el~~~~~~ei~~l~~~~~~l~~ 473 (880)
T PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEE 473 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777766654433
No 94
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=40.92 E-value=22 Score=33.64 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCCccchHHH
Q 036719 327 LKKRSELEEICKMTHIEPDTSTAA 350 (601)
Q Consensus 327 ~k~r~eLeelWd~~~~~~e~~~~~ 350 (601)
.+.|.+|-+||+.|++|.-.|+.|
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyF 26 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYF 26 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhh
Confidence 567889999999999999876544
No 95
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=39.78 E-value=4.8e+02 Score=27.61 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 226 STNISNSTLEGLEHA--------IVKLKAERKIRIQKLKDIVVSLFE 264 (601)
Q Consensus 226 ~~~lS~~~L~~L~~~--------~~~L~e~K~~R~~kl~~L~~~l~~ 264 (601)
+..+|.++...|... +.+|-.+|..-..++..|..+|.+
T Consensus 198 ~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 198 RALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred ccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888777666 788888888877788777777754
No 96
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.70 E-value=9.9e+02 Score=31.17 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHHHHHHHh
Q 036719 364 PSELLANIEAQIVKVKDEAL 383 (601)
Q Consensus 364 ~eelL~~~E~eI~~lke~~~ 383 (601)
-+.+.+.++.++..+.+...
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~ 575 (1486)
T PRK04863 556 LEQLQEELEARLESLSESVS 575 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556677777777766443
No 97
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=39.63 E-value=41 Score=25.62 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHH-hhhhHHHHHHH
Q 036719 369 ANIEAQIVKVKDEA-LSRKDIMDRID 393 (601)
Q Consensus 369 ~~~E~eI~~lke~~-~~~k~Il~~ve 393 (601)
..+|.||..++..| ..|+||++.|+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 46889999998776 56899999885
No 98
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.58 E-value=6.6e+02 Score=29.25 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHH
Q 036719 234 LEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVER 313 (601)
Q Consensus 234 L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~R 313 (601)
+..|+..++.|......-...+..+...+..++.....-..+...-...... ..=+.+.+...+.=|.+
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l-----------~~k~~~lL~d~e~ni~k 398 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL-----------KKKTVELLPDAEENIAK 398 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhcCcHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 036719 314 LTKLKATRMKELVLKKRSELEEICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRID 393 (601)
Q Consensus 314 Le~lK~~~mk~lI~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~ve 393 (601)
|+.+-......++ +|..-|...-.+-.+. -+..-....+. -......+..++......+.|..-+.
T Consensus 399 L~~~v~~s~~rl~-----~L~~qWe~~R~pL~~e--~r~lk~~~~~~-------~~e~~~~~~~ik~~r~~~k~~~~e~~ 464 (594)
T PF05667_consen 399 LQALVEASEQRLV-----ELAQQWEKHRAPLIEE--YRRLKEKASNR-------ESESKQKLQEIKELREEIKEIEEEIR 464 (594)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHhHHHHH--HHHHHHHHhhc-------chHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHH-HHHHcCCccccccCCCccccchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHcCCceEE
Q 036719 394 RWLYACEEEKW-LEEYNQDDNRYNAGRGAHINLKRAERARVTVSKIPAIVDNLINRTLAWEEEKKIFFLY 462 (601)
Q Consensus 394 kw~~l~~e~~~-LE~~~~D~~R~~~~RG~h~~LlreEK~Rk~i~KlPkl~~~L~~~l~~wE~e~g~~Fl~ 462 (601)
.|......-.- ++.-.+|.||-.--|.=+-+-..-.|.+.-|.|+-.=+..|-..|..-...-.+.|.|
T Consensus 465 ~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v 534 (594)
T PF05667_consen 465 QKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTV 534 (594)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
No 99
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=36.76 E-value=7.5e+02 Score=28.94 Aligned_cols=81 Identities=11% Similarity=0.193 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHH
Q 036719 102 SLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKE 181 (601)
Q Consensus 102 tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~E 181 (601)
.+.++...+...+..|+.+|..-+..+..+..+|..|-..+...+... +...+|... ..|+..+..|+++
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~---------~pa~pse~E-~~Lq~E~~~L~kE 95 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPE---------PPAGPSEVE-QQLQAEAEHLRKE 95 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc---------ccccchHHH-HHHHHHHHHHHHH
Confidence 467788889999999999999999999999999999888887654321 112445443 3455555556555
Q ss_pred HHHHHHHHHHH
Q 036719 182 KSDRLNRVLEY 192 (601)
Q Consensus 182 K~~R~~kv~~l 192 (601)
++.=..++...
T Consensus 96 lE~L~~qlqaq 106 (617)
T PF15070_consen 96 LESLEEQLQAQ 106 (617)
T ss_pred HHHHHHHHHHH
Confidence 54444433333
No 100
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=36.45 E-value=6.3e+02 Score=27.95 Aligned_cols=46 Identities=28% Similarity=0.349 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 036719 232 STLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKIT 283 (601)
Q Consensus 232 ~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~ 283 (601)
.||+.|....-+|+..-.+-.+ .-...||.+||-=+.|.+......
T Consensus 179 ~~leQLRre~V~lentlEQEqE------alvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 179 NTLEQLRREAVQLENTLEQEQE------ALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred hhHHHHHHHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555554444433322222 223567888776555555444443
No 101
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=35.79 E-value=4.6e+02 Score=26.17 Aligned_cols=145 Identities=12% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 036719 57 VEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKE--ERMKQFADIKAQ 134 (601)
Q Consensus 57 V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~--eR~~ef~~l~~q 134 (601)
+..+...|+.|-.-...+..+=..+-..+-.|... .+..-..|...+......+..--+..+ +|......++.-
T Consensus 41 ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~----Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~ 116 (215)
T PF07083_consen 41 IKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKE----FEAKIKELIAPIDEASDKIDEQIKEFEEKEKEEKREKIKEY 116 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 036719 135 IEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQ 209 (601)
Q Consensus 135 i~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~ 209 (601)
+..+|...+.++..+...+ .+.+.....|+.. +...+..+-......++.+......|...|...|+++..
T Consensus 117 ~~~~~~~~~v~~~~fe~~~-~~~wlnks~s~kk---~~eei~~~i~~~~~~~~~~~~~~~~i~~~A~~~~l~~~~ 187 (215)
T PF07083_consen 117 FEEMAEEYGVDPEPFERII-KPKWLNKSYSLKK---IEEEIDDQIDKIKQDLEEIKAAKQAIEEKAEEYGLPADP 187 (215)
T ss_pred HHHHHHHcCCChHHHhhhc-chHHhhcCCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHH
No 102
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.09 E-value=5.1e+02 Score=26.50 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 51 EVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFAD 130 (601)
Q Consensus 51 ~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~ 130 (601)
+-.+..+...+.....+-.++..++.+|+.+-.-+...... -..+|=..++.+|...+..++.+...-..++.+
T Consensus 41 e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k------l~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 41 EALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK------LSAVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555566666666666666555555443221 133444557888888888888888877788888
Q ss_pred HHHHHHHHHHhhC
Q 036719 131 IKAQIEKISGEIS 143 (601)
Q Consensus 131 l~~qi~~L~~eL~ 143 (601)
+...+..+.+.+.
T Consensus 115 l~~~~~~l~~~i~ 127 (239)
T COG1579 115 LMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777777664
No 103
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=34.75 E-value=4.9e+02 Score=26.22 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=34.3
Q ss_pred cchHHHHHHHhhhhhHHHHHHHHHHHHHHHH------------------HcCCceEECCccHHHHHHHH
Q 036719 424 NLKRAERARVTVSKIPAIVDNLINRTLAWEE------------------EKKIFFLYDGVRLVSILDDY 474 (601)
Q Consensus 424 ~LlreEK~Rk~i~KlPkl~~~L~~~l~~wE~------------------e~g~~Fl~dG~~ll~~lee~ 474 (601)
++-|++..-+.+.|+|+++.++..++..=+. .+|.-.-....+|.+||++-
T Consensus 119 ~~~Rek~Ia~nM~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDprdprF~eml~~k 187 (217)
T PF10147_consen 119 RLAREKEIAKNMAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPRDPRFQEMLQEK 187 (217)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCChHHHHHHHHH
Confidence 3445666666677899999888877655432 24555555677899999643
No 104
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=34.58 E-value=6.8e+02 Score=27.80 Aligned_cols=172 Identities=17% Similarity=0.213 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHH
Q 036719 165 LRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKL 244 (601)
Q Consensus 165 ~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L 244 (601)
...|..|+..|..|+.-++.-...+...+..|..=...+-- . ++.. + .+.+=..+..-..+|
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~----~------~~~~-----~---~~s~R~y~e~~k~kL 215 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS----S------SLSA-----S---GSSNRAYVESSKKKL 215 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h------hhcc-----C---CCcchHHHHHhHHHH
Confidence 47788888899999888888887666555555444333321 0 0000 0 112333444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 245 KAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKE 324 (601)
Q Consensus 245 ~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~ 324 (601)
..+-..-+.++.+|..-|..|- .. -+++|+.|+ ..-++.+..++..+..-=. .|.+
T Consensus 216 ~~~Sd~lltkVDDLQD~vE~LR----------kD--V~~RgVRp~-----------~~qLe~v~kdi~~a~keL~-~m~~ 271 (426)
T smart00806 216 SEDSDSLLTKVDDLQDIIEALR----------KD--VAQRGVRPS-----------KKQLETVQKELETARKELK-KMEE 271 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HH--HHHcCCCCC-----------HHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4444444555555555444332 11 234455443 5666777777776655433 3788
Q ss_pred HHHHHHHHHHHHHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 036719 325 LVLKKRSELEEICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDRW 395 (601)
Q Consensus 325 lI~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vekw 395 (601)
+|..-+--|..+|..=. +.+ +.--+.|...|.-+..|++-...-.+.|.+|+++
T Consensus 272 ~i~~eKP~WkKiWE~EL---------~~V--------cEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~ 325 (426)
T smart00806 272 YIDIEKPIWKKIWEAEL---------DKV--------CEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQC 325 (426)
T ss_pred HHhhcChHHHHHHHHHH---------HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888886421 000 1123446667777788888888888999999988
No 105
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=34.00 E-value=1e+03 Score=29.69 Aligned_cols=309 Identities=18% Similarity=0.257 Sum_probs=156.4
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhCC-CCCCCCccccCCCC
Q 036719 28 WSDIGESEAEKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAEL-----ATLMAALGE-LNIHSPIQTEKRST 101 (601)
Q Consensus 28 WdEIG~~e~eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El-----~~L~~eLg~-~~~~~~~~~~~~~~ 101 (601)
|...-..+..+.++ -+++++.||++--- ++.|+.|+.-| +.-..+|.- |+.. ...+-+.
T Consensus 1002 WSaFNs~EA~~AK~-------QMDaIKqmIekKv~-----L~~L~qCqdALeKqnIa~AL~ALn~IPSdK---Ems~Is~ 1066 (1439)
T PF12252_consen 1002 WSAFNSEEARQAKA-------QMDAIKQMIEKKVV-----LQALTQCQDALEKQNIAGALQALNNIPSDK---EMSKISS 1066 (1439)
T ss_pred chhcCcHHHHHHHH-------HHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhHHHHHHHHhcCCchh---hhhhhhH
Confidence 55555555544443 35667777765322 23555555443 333334433 2221 1223566
Q ss_pred cHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-HHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHH
Q 036719 102 SLKEKLASIAPLVEDLRTK-----------KEERMKQF-ADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRIT 169 (601)
Q Consensus 102 tL~eql~~l~~~le~Lrk~-----------K~eR~~ef-~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~ 169 (601)
.|++|+..++..|+-|+.- -..|...+ .++..+|..| .--... + + +...=-...|+
T Consensus 1067 eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~L----Ek~k~~-~--l-----~~ikK~ia~ln 1134 (1439)
T PF12252_consen 1067 ELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDL----EKAKLD-N--L-----DSIKKAIANLN 1134 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHH----hccccc-c--H-----HHHHHHHHHHH
Confidence 7888888888888888621 11222222 1222222222 111100 0 0 00000234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 036719 170 ECQTHLRTLQKEKSDRLNRVLE-YVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAER 248 (601)
Q Consensus 170 ~l~~~L~~Lq~EK~~R~~kv~~-l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K 248 (601)
.++..|.-|++||.+-...-.. =-+.|..|=..|. .+| ..|.+.-+....+.+..|+.++
T Consensus 1135 nlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq--------~~~-----------~kL~dAyl~eitKqIsaLe~e~ 1195 (1439)
T PF12252_consen 1135 NLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQ--------VIH-----------TKLYDAYLVEITKQISALEKEK 1195 (1439)
T ss_pred HHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHH--------Hhh-----------hhhHHHHHHHHHHHHHHHHhhC
Confidence 7777777777777543210000 0011111111111 112 2455667777888888888766
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 249 KIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELVLK 328 (601)
Q Consensus 249 ~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~k 328 (601)
-.+.. ++...+..+-+.|..=+--|+.-...+ .+| .+|.++ .-|+.+...|+++.+ ...+.+|..
T Consensus 1196 PKnlt---dvK~missf~d~laeiE~LrnErIKkH---GaS----kePLDl--SDlDkLk~~LQ~iNQ---~LV~~LIn~ 1260 (1439)
T PF12252_consen 1196 PKNLT---DVKSMISSFNDRLAEIEFLRNERIKKH---GAS----KEPLDL--SDLDKLKGQLQKINQ---NLVKALINT 1260 (1439)
T ss_pred CCchh---hHHHHHHHHHhhhhHHHHHHHHHhhcc---CCC----CCccch--hhHHHHHHHHHHHHH---HHHHHHHHH
Confidence 66654 555555555555543222222222221 223 345555 568888876665554 556678888
Q ss_pred HHHHHHHHHHHcCCCccchHHHhhhhhhh---cCCCCCcHHHHHHHHHHHHHHHHHHhhhh----HHHHH-------HHH
Q 036719 329 KRSELEEICKMTHIEPDTSTAAEKSNAMI---DSGLVDPSELLANIEAQIVKVKDEALSRK----DIMDR-------IDR 394 (601)
Q Consensus 329 ~r~eLeelWd~~~~~~e~~~~~~~~~~~~---~s~~~~~eelL~~~E~eI~~lke~~~~~k----~Il~~-------vek 394 (601)
.|.-|..+=-+.+-.. ..+.+.-+.++ ... .|.++.-.....+|.++++++-... .+..+ |.+
T Consensus 1261 iR~slnqme~~tf~~q--~~eiq~n~~ll~~L~~t-lD~S~~a~Kqk~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~q 1337 (1439)
T PF12252_consen 1261 IRVSLNQMEVKTFEEQ--EKEIQQNLQLLDKLEKT-LDDSDTAQKQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQ 1337 (1439)
T ss_pred HHHHHHHhhhhhhhhh--hHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHH
Confidence 8887777664444332 22222222222 222 5788889999999999998876544 34444 556
Q ss_pred HHHHhH
Q 036719 395 WLYACE 400 (601)
Q Consensus 395 w~~l~~ 400 (601)
...+|+
T Consensus 1338 LRelC~ 1343 (1439)
T PF12252_consen 1338 LRELCE 1343 (1439)
T ss_pred HHHHHH
Confidence 666665
No 106
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.71 E-value=3.2e+02 Score=24.21 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 231 NSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNL 268 (601)
Q Consensus 231 ~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~ 268 (601)
++.+..|...+..|+.....-...+..+..++..+=..
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666665556666666665555443
No 107
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.33 E-value=2.9e+02 Score=28.69 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHH
Q 036719 102 SLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKE 181 (601)
Q Consensus 102 tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~E 181 (601)
++-..+..-...+.++.+.+..-..++..+..+|..+...+..... +.+=+...+..|+..|..+...
T Consensus 28 ~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~------------~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 28 LLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQK------------EIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466677778888888888888888899888888887754322 2234778888999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 036719 182 KSDRLNRVLEYVNEVH 197 (601)
Q Consensus 182 K~~R~~kv~~l~~~I~ 197 (601)
..+|.+.|..-...+.
T Consensus 96 I~~r~~~l~~raRAmq 111 (265)
T COG3883 96 IVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887766655544
No 108
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=33.05 E-value=4.4e+02 Score=25.16 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 110 IAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRV 189 (601)
Q Consensus 110 l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv 189 (601)
-+..++.+|-.......++..+..++...- +||+ +|+.-..+.++.....|.+..++|-..+
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke-~lge-----------------~L~~iDFeqLkien~~l~~kIeERn~eL 65 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKE-ELGE-----------------GLHLIDFEQLKIENQQLNEKIEERNKEL 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777666666666666666665552 3332 4566677888999999999999999888
Q ss_pred HHHHHHHHHHHHHhC
Q 036719 190 LEYVNEVHSICGVLG 204 (601)
Q Consensus 190 ~~l~~~I~~L~~~Lg 204 (601)
..+...+..-...|.
T Consensus 66 ~~Lk~~~~~~v~~L~ 80 (177)
T PF13870_consen 66 LKLKKKIGKTVQILT 80 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877666554443
No 109
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=32.86 E-value=1.8e+02 Score=34.01 Aligned_cols=203 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 179 QKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDI 258 (601)
Q Consensus 179 q~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L 258 (601)
..+..++...+...++.+.+.....+..+. ...........+...-....++.+.+.+..|.+++.+-.++++.+
T Consensus 45 ~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~-----~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l 119 (646)
T PRK05771 45 LRKLRSLLTKLSEALDKLRSYLPKLNPLRE-----EKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKEL 119 (646)
T ss_pred HhHHHHHHHHHHHHHHHHHHhccccccchh-----hhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH--HHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 036719 259 VVSLFEL--WNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELV-------LKK 329 (601)
Q Consensus 259 ~~~l~~L--W~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI-------~k~ 329 (601)
...+..| |..+++|.+.-.........+ +.++.+..+.+..+........-..-+..+ .+.
T Consensus 120 ~~~~~~l~~~~~ld~~l~~~~~~~~~~~~~----------G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~~~~~ 189 (646)
T PRK05771 120 EQEIERLEPWGNFDLDLSLLLGFKYVSVFV----------GTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKEL 189 (646)
T ss_pred HHHHHHhhhhhcCCCCHHHhCCCCcEEEEE----------EEecchhhhhHHhhccCceEEEEEecCCcEEEEEEEEhhh
Q ss_pred HHHHHHHHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--------HHHHhHH
Q 036719 330 RSELEEICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDR--------WLYACEE 401 (601)
Q Consensus 330 r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vek--------w~~l~~e 401 (601)
..++.++++.+++. .+.-+. ++ .+.+.++.++.++..++++.+.-+.-+..+.+ |...+..
T Consensus 190 ~~~~~~~l~~~~f~--------~~~~p~-~~--~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 258 (646)
T PRK05771 190 SDEVEEELKKLGFE--------RLELEE-EG--TPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEI 258 (646)
T ss_pred HHHHHHHHHHCCCE--------EecCCC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 036719 402 EKWLEE 407 (601)
Q Consensus 402 ~~~LE~ 407 (601)
+....+
T Consensus 259 ~~~~~~ 264 (646)
T PRK05771 259 ELERAE 264 (646)
T ss_pred HHHHHH
No 110
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.39 E-value=8.2e+02 Score=28.11 Aligned_cols=35 Identities=6% Similarity=0.123 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 036719 113 LVEDLRTKKEERMKQFADIKAQIEKISGEISGYDH 147 (601)
Q Consensus 113 ~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~ 147 (601)
.++++..+.++|..+...-+..+.+-|..|-..+.
T Consensus 613 ~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~ 647 (741)
T KOG4460|consen 613 SLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFH 647 (741)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 34566667778888888888888888887765554
No 111
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=31.74 E-value=6e+02 Score=29.31 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcC-CceEECC-ccHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHH
Q 036719 444 NLINRTLAWEEEKK-IFFLYDG-VRLVSILDDYKLTRVQREEEKKRYRDQKKMQDL 497 (601)
Q Consensus 444 ~L~~~l~~wE~e~g-~~Fl~dG-~~ll~~lee~~~~r~eKE~ek~r~R~~kk~~~~ 497 (601)
.+...+.++|+.-- --|+-.| .+|.++.++...|...| ++++-..+.+..
T Consensus 343 ~v~~~~~~Fe~~L~~lgf~~~~~~~L~~~~~~i~~~f~~k----r~~~iL~~AR~l 394 (593)
T PF06248_consen 343 EVLESVEEFEEALKELGFLSSDNTELSEFVDNIETHFANK----RCQDILDKARDL 394 (593)
T ss_pred HHHHHHHHHHHHHHHcCCcCCCchHHHHHHHhHHHHHHHH----HHHHHHHHHHHH
Confidence 34557777776633 3343333 56778888888877654 333444555543
No 112
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=31.68 E-value=3.1e+02 Score=24.14 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 232 STLEGLEHAIVKLKAERKIRIQKLKDIVVSLFEL 265 (601)
Q Consensus 232 ~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~L 265 (601)
+.++.+...+..|+.....-..++.++...|..+
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555443
No 113
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=31.33 E-value=5.9e+02 Score=26.10 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036719 63 AKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEI 142 (601)
Q Consensus 63 ~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL 142 (601)
.-+.+...+..-..+-..+....|.. .... .......++...+..++..|+....--..=...|.....-|.-||
T Consensus 44 ~L~e~~~~L~~E~~ed~~~r~~~g~~-W~r~-~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~--- 118 (296)
T PF13949_consen 44 ILDEIEEMLDEEEREDEQLRAKYGER-WTRP-PSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLS--- 118 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTT-CGSS--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-CcCC-CcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHc---
Confidence 33334444444555556666666652 1100 011224567777777777777776666555555555555554443
Q ss_pred CCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 143 SGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVN 194 (601)
Q Consensus 143 ~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~ 194 (601)
++...+...++.......+-....+..++..+..+..-+.+|...+..+..
T Consensus 119 -~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 119 -GPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKE 169 (296)
T ss_dssp -SSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322111000101110111223566667777777777777777765555554
No 114
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.21 E-value=4.1e+02 Score=25.87 Aligned_cols=85 Identities=22% Similarity=0.315 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHH
Q 036719 101 TSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQK 180 (601)
Q Consensus 101 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~ 180 (601)
.++-+.+..++..|.++.+.+.+-..++..+..+++.+-..+. --...|..+...+..|+.
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~-------------------~~~~~l~~l~~~~~~L~~ 130 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELS-------------------EKERRLAELEAELAQLEE 130 (194)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHH-------------------HHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777776655555555544444433221 135678888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 036719 181 EKSDRLNRVLEYVNEVHSICGVLG 204 (601)
Q Consensus 181 EK~~R~~kv~~l~~~I~~L~~~Lg 204 (601)
+...+...+.+.-..+..+-+++-
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777777766554
No 115
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=31.13 E-value=5.9e+02 Score=28.55 Aligned_cols=145 Identities=24% Similarity=0.302 Sum_probs=70.5
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---cccCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 036719 48 ECLEVYR-RKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPI---QTEKRSTSLKEKLASIAPLVEDLRTKKEE 123 (601)
Q Consensus 48 e~l~v~~-~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~---~~~~~~~tL~eql~~l~~~le~Lrk~K~e 123 (601)
+|-++|- .+|.+... +.--.+-+-+...+|..=..+|-+.-+-... ..++.-..|.+-++....+|.+-|..|+-
T Consensus 337 q~sN~yLe~kvkeLQ~-k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKet 415 (527)
T PF15066_consen 337 QCSNLYLEKKVKELQM-KITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKET 415 (527)
T ss_pred hhccHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4777774 45555443 3333333333333333333333333221000 12223334556666777778887777776
Q ss_pred HHHHHHHHHHHHH----HHHHhhCCCCCCCcccccccCc-cCCCCc-----HHHHHHHH--------HHHHHHHHHHHHH
Q 036719 124 RMKQFADIKAQIE----KISGEISGYDHLSNSLINSLSL-EEEDLS-----LRRITECQ--------THLRTLQKEKSDR 185 (601)
Q Consensus 124 R~~ef~~l~~qi~----~L~~eL~~~~~~~~e~l~~~~~-~e~dlS-----~~~L~~l~--------~~L~~Lq~EK~~R 185 (601)
-.-+|+.++..-. +...+|......+. .|. =+..|| .++|..++ .-|+.|+.||..|
T Consensus 416 LqlelkK~k~nyv~LQEry~~eiQqKnksvs-----qclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~ 490 (527)
T PF15066_consen 416 LQLELKKIKANYVHLQERYMTEIQQKNKSVS-----QCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETR 490 (527)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666554432 22233333222111 000 011222 23333333 5567788999999
Q ss_pred HHHHHHHHHHHHH
Q 036719 186 LNRVLEYVNEVHS 198 (601)
Q Consensus 186 ~~kv~~l~~~I~~ 198 (601)
-++|..+....+.
T Consensus 491 EqefLslqeEfQk 503 (527)
T PF15066_consen 491 EQEFLSLQEEFQK 503 (527)
T ss_pred HHHHHHHHHHHHH
Confidence 9888877665544
No 116
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=30.93 E-value=7.8e+02 Score=27.36 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHH
Q 036719 35 EAEKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLV 114 (601)
Q Consensus 35 e~eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~l 114 (601)
..+-.+++..|-+ ++-||.|.--.-=.-.++...|..++.+|+.|...|...... .+ .|++++..+..++
T Consensus 184 ~~q~GRlvQRLlE--IEtYR~mALL~LP~Ar~~~~~L~~~E~~L~~l~~~~~~~~~~----~~----~LL~~Lt~LAa~v 253 (420)
T PF11902_consen 184 PRQAGRLVQRLLE--IETYRMMALLGLPVARELSPELSELEQRLAALTQRMASSEDT----DD----ELLDELTRLAAEV 253 (420)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----HH----HHHHHHHHHHHHH
Confidence 3344455555432 467887766666666678889999999999999999987432 11 8899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 036719 115 EDLRTKKEERMKQFADIKAQIEKISGEISGYD 146 (601)
Q Consensus 115 e~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~ 146 (601)
|.+...-.-|..--...-.=+..=-++|.+.+
T Consensus 254 E~~~a~t~~RF~As~AY~~iV~~RL~eLrE~~ 285 (420)
T PF11902_consen 254 EALAARTSYRFSASRAYYEIVEQRLAELREER 285 (420)
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhcccc
Confidence 99988876666554443333332233444443
No 117
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.78 E-value=7.9e+02 Score=27.40 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 112 PLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLE 191 (601)
Q Consensus 112 ~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~ 191 (601)
..+..+..+...-..++...+..+..+-..+.+.+.... .........-..+|.+++.++..+...+....-+|..
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~----~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~ 279 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLL----AGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIA 279 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcC----cccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence 334444444444445556666666677666665443211 0000111233577999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 192 YVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFEL 265 (601)
Q Consensus 192 l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~L 265 (601)
+..+|..+-..+.-....... ........+..+..|...+..++.....-..++..+...+..+
T Consensus 280 l~~qi~~l~~~l~~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 343 (498)
T TIGR03007 280 TKREIAQLEEQKEEEGSAKNG----------GPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERL 343 (498)
T ss_pred HHHHHHHHHHHHHhhcccccc----------CcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888877532111100 0011122344456666666666666666666666666666655
No 118
>PRK09039 hypothetical protein; Validated
Probab=30.15 E-value=7.2e+02 Score=26.70 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=74.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHH
Q 036719 100 STSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQ 179 (601)
Q Consensus 100 ~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq 179 (601)
..++..++..+...|..++....+-..++..++.||..|-..|+.-...+ +-+..+..+.+.+++.|+
T Consensus 111 ~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L------------~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 111 GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL------------DASEKRDRESQAKIADLG 178 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 34667788888888888888888888888888888888877765322111 124455566666666666
Q ss_pred HHHHHHH----HHHHHHHHHHH-HHHHHhCCCcccccc-c--cCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 036719 180 KEKSDRL----NRVLEYVNEVH-SICGVLGLDFGQTVS-D--VHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKA 246 (601)
Q Consensus 180 ~EK~~R~----~kv~~l~~~I~-~L~~~Lg~d~~~~v~-e--v~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e 246 (601)
.+.+.-+ ..+..+.+.+. .|-..||-...-.+. . +-++- ...+..+..|++.....|......|..
T Consensus 179 ~~L~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~g~~~~~~~~-vlF~~gsa~L~~~~~~~L~~ia~~l~~ 252 (343)
T PRK09039 179 RRLNVALAQRVQELNRYRSEFFGRLREILGDREGIRIVGDRFVFQSE-VLFPTGSAELNPEGQAEIAKLAAALIE 252 (343)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEECCEEEecCC-ceeCCCCcccCHHHHHHHHHHHHHHHH
Confidence 6665554 33445555552 223455533211110 0 00000 011123556777766666665554443
No 119
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.04 E-value=6.9e+02 Score=26.51 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 036719 226 STNISNSTLEGLEHAIVKLKAE 247 (601)
Q Consensus 226 ~~~lS~~~L~~L~~~~~~L~e~ 247 (601)
+.+.|..-+..|...+..|+..
T Consensus 265 ~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 265 CRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 3456777777777777766543
No 120
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=29.70 E-value=4.9e+02 Score=24.65 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 036719 236 GLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDS 271 (601)
Q Consensus 236 ~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~ 271 (601)
-+.......+..+..-...+..+...+..+|..+.-
T Consensus 87 ~~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~~~~k 122 (191)
T cd07610 87 PLEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAK 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333445556667788888888887754
No 121
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.65 E-value=5.3e+02 Score=29.94 Aligned_cols=98 Identities=19% Similarity=0.345 Sum_probs=68.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHH
Q 036719 101 TSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQK 180 (601)
Q Consensus 101 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~ 180 (601)
......+..+...++.|..+-.+-...+.+++..|..|-++|..-... +.....-..++..+...+..|++
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~---------~~~~~~~~rei~~~~~~I~~L~~ 488 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE---------VRDKVRKDREIRARDRRIERLEK 488 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhhHHHHHHHHHHHHHHH
Confidence 456667777788888888777777777777777777777766542211 01223345778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 036719 181 EKSDRLNRVLEYVNEVHSICGVLGLDF 207 (601)
Q Consensus 181 EK~~R~~kv~~l~~~I~~L~~~Lg~d~ 207 (601)
+..+-...+.++...+..+-..=++++
T Consensus 489 ~L~e~~~~ve~L~~~l~~l~k~~~lE~ 515 (652)
T COG2433 489 ELEEKKKRVEELERKLAELRKMRKLEL 515 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 888888888888888777765555443
No 122
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.24 E-value=6.2e+02 Score=25.66 Aligned_cols=92 Identities=22% Similarity=0.334 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHH
Q 036719 47 RECLEVYRRKVEEAANAKARL-----HQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKK 121 (601)
Q Consensus 47 ~e~l~v~~~~V~e~~~~k~~L-----~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K 121 (601)
..+.+-++.||-..+..|--+ +-.+.-.++|+.+-.-.-|..... --...+-+++.+..++..++++.+.|
T Consensus 76 ~kf~eeLrg~VGhiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~----~v~~~~d~ke~~ee~kekl~E~~~Ek 151 (290)
T COG4026 76 EKFFEELRGMVGHIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQ----RVPEYMDLKEDYEELKEKLEELQKEK 151 (290)
T ss_pred HHHHHHHHHhhhhhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHh----ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666555544321 122333444454444444444332 11244578888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 036719 122 EERMKQFADIKAQIEKISGEI 142 (601)
Q Consensus 122 ~eR~~ef~~l~~qi~~L~~eL 142 (601)
.+-++++..++.+.......|
T Consensus 152 eeL~~eleele~e~ee~~erl 172 (290)
T COG4026 152 EELLKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877766655544
No 123
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=29.06 E-value=7.2e+02 Score=26.39 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHH
Q 036719 165 LRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKL 244 (601)
Q Consensus 165 ~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L 244 (601)
.-.++.|+..+..|+.|-..=......+......+ ...-.+.| .++ +..+.-.+..|+.|...+..-
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~----EekEqqLv-------~dc--v~QL~~An~qia~LseELa~k 225 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTY----EEKEQQLV-------LDC--VKQLSEANQQIASLSEELARK 225 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc----cHHHHHHH-------HHH--HHHhhhcchhHHHHHHHHHHH
Confidence 45677888888888876654444444443222111 00000001 011 112333556788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 245 KAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKE 324 (601)
Q Consensus 245 ~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~ 324 (601)
.++-..-.+.|..|..+|..|=.++.--.-|-+....... .+.++=..+.+|+.-|+.-.++.+.
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~--------------~ske~Q~~L~aEL~elqdkY~E~~~- 290 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ--------------ASKESQRQLQAELQELQDKYAECMA- 290 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888777888888888888887766544333333322221 2466777888999999998888776
Q ss_pred HHHHHHHHHHHHH
Q 036719 325 LVLKKRSELEEIC 337 (601)
Q Consensus 325 lI~k~r~eLeelW 337 (601)
+....+.+|..+-
T Consensus 291 mL~EaQEElk~lR 303 (306)
T PF04849_consen 291 MLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHhh
Confidence 4567777777653
No 124
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.12 E-value=5.2e+02 Score=29.43 Aligned_cols=74 Identities=15% Similarity=0.335 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 47 RECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMK 126 (601)
Q Consensus 47 ~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ 126 (601)
.+|..++ ..++.+++.|..+..++..+...+..|-++|-... ..=.+|+..+..+|-.|..+......
T Consensus 441 ~Ec~aL~-~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr-----------~NYE~QLs~MSEHLasmNeqL~~Q~e 508 (518)
T PF10212_consen 441 AECRALQ-KRLESAEKEKESLEEELKEANQNISRLQDELETTR-----------RNYEEQLSMMSEHLASMNEQLAKQRE 508 (518)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565444 34777788888888888888888888888886643 22345788888888888777766666
Q ss_pred HHHHHH
Q 036719 127 QFADIK 132 (601)
Q Consensus 127 ef~~l~ 132 (601)
+|..++
T Consensus 509 eI~~LK 514 (518)
T PF10212_consen 509 EIQTLK 514 (518)
T ss_pred HHHHHh
Confidence 655554
No 125
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.86 E-value=3.8e+02 Score=28.48 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036719 52 VYRRKVEEAANAKARLHQTVAAKEAELATLMAALGE 87 (601)
Q Consensus 52 v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~ 87 (601)
.+...+...+.....+.+++..++.+-..|..+|..
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666666666666665544
No 126
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.76 E-value=3e+02 Score=28.65 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036719 307 ASTEVERLTKLKATRMKELV 326 (601)
Q Consensus 307 le~Ev~RLe~lK~~~mk~lI 326 (601)
+..-++||..|+..+|.+|+
T Consensus 70 ~~~~~erl~~lr~shi~el~ 89 (359)
T KOG4398|consen 70 LRSHYERLANLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999987775
No 127
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=27.36 E-value=6.9e+02 Score=25.58 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 036719 106 KLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDR 185 (601)
Q Consensus 106 ql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R 185 (601)
-+..+...++.+++.......++.++..++..+-.+|..-..-+.. . .... ...-+.+.++.|...++.++.....-
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~-~-e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR-A-EEKL-SAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHH-hccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444322110000 0 0000 12336788888888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 036719 186 LNRVLEYVNEVHSICGVLG 204 (601)
Q Consensus 186 ~~kv~~l~~~I~~L~~~Lg 204 (601)
...+..+...+..|-..+.
T Consensus 109 e~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 109 EDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666554
No 128
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.24 E-value=1.4e+03 Score=28.97 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=7.5
Q ss_pred HHHHHHHcCCceEE
Q 036719 449 TLAWEEEKKIFFLY 462 (601)
Q Consensus 449 l~~wE~e~g~~Fl~ 462 (601)
|.+-..-.-.||.+
T Consensus 1080 lFAi~~~~PaPf~v 1093 (1163)
T COG1196 1080 LFAIQKYRPAPFYV 1093 (1163)
T ss_pred HHHHHhhCCCCeee
Confidence 33444445667766
No 129
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.00 E-value=1.2e+03 Score=28.48 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=7.4
Q ss_pred ccccccCCCc
Q 036719 412 DNRYNAGRGA 421 (601)
Q Consensus 412 ~~R~~~~RG~ 421 (601)
|.-|. .|||
T Consensus 606 PdsFl-rrGG 614 (1243)
T KOG0971|consen 606 PDSFL-RRGG 614 (1243)
T ss_pred cHhhc-cCCC
Confidence 66788 8999
No 130
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=25.85 E-value=6e+02 Score=28.76 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---cc-cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 54 RRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPI---QT-EKRSTSLKEKLASIAPLVEDLRTKKEERMKQFA 129 (601)
Q Consensus 54 ~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~---~~-~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~ 129 (601)
+..+.+++...+.+...++.+.+++ .++..++........ .. ......+.+.+..+..++.+++....+-..++.
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALA-KFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIR 155 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666 344555532110000 00 112233667777888888888888888888888
Q ss_pred HHHHHHHHHHHhhC
Q 036719 130 DIKAQIEKISGEIS 143 (601)
Q Consensus 130 ~l~~qi~~L~~eL~ 143 (601)
++..+|..+-.+|.
T Consensus 156 ~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 156 ELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887777664
No 131
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=25.27 E-value=7.1e+02 Score=25.07 Aligned_cols=71 Identities=13% Similarity=0.308 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCC-cccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 129 ADIKAQIEKISGEISGYDHLS-NSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSI 199 (601)
Q Consensus 129 ~~l~~qi~~L~~eL~~~~~~~-~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L 199 (601)
.++..+|..+...|+...... +++++...++-+|+-.=+...-+..|-.|+.....-++++..+++++|+-
T Consensus 31 ~eiE~qin~~~~vL~~~~~~Md~pLvd~eGfPRsDIDV~qVRtaRh~ii~LrNDh~el~~qi~~~l~q~hs~ 102 (231)
T KOG3129|consen 31 TEIETQINELVEVLENNGGTMDGPLVDAEGFPRSDIDVYQVRTARHNIICLRNDHKELTEQIEVLLNQLHSE 102 (231)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCcccCCCCCccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 355667777777776543222 24555555666677777777788888888888877777666666666554
No 132
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=25.13 E-value=1.1e+03 Score=27.17 Aligned_cols=232 Identities=13% Similarity=0.118 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 56 KVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQI 135 (601)
Q Consensus 56 ~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi 135 (601)
-+.+.|..-+..+.-+-.+++|=..|-..|++-... .....+.++. .+...+-.+++..++=.+....++.+|
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~----~~~~ts~ik~---~ye~El~~ar~~l~e~~~~ra~~e~ei 115 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV----VGRETSGIKA---KYEAELATARKLLDETARERAKLEIEI 115 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccCCCcchhH---HhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888889999999999999984322 2345566665 466677777777777777777888888
Q ss_pred HHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccC
Q 036719 136 EKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVH 215 (601)
Q Consensus 136 ~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~ 215 (601)
..+..++..-..... ....+..-..+++..+...+..++.+.+-=...+..+...+..|-.+.+-
T Consensus 116 ~kl~~e~~elr~~~~-----~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~r---------- 180 (546)
T KOG0977|consen 116 TKLREELKELRKKLE-----KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSR---------- 180 (546)
T ss_pred HHhHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh----------
Confidence 888777653211100 00011122344455555555555555554444444444444444333321
Q ss_pred CCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCC
Q 036719 216 PSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITE 295 (601)
Q Consensus 216 ~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~ 295 (601)
=...|..+...++.=-..+..+..+++.|...|.-+= .+...+...-.....
T Consensus 181 --------------l~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~---~~h~~eI~e~~~~~~----------- 232 (546)
T KOG0977|consen 181 --------------LREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK---RIHKQEIEEERRKAR----------- 232 (546)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---hccHHHHHHHHHHHh-----------
Confidence 0124555555555555555666666666666665332 122222221111111
Q ss_pred CCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 296 PGVLSTEVIEQASTEVE-RLTKLKATRMKELVLKKRSELEEICKM 339 (601)
Q Consensus 296 ~~~LS~~~I~~le~Ev~-RLe~lK~~~mk~lI~k~r~eLeelWd~ 339 (601)
...|.++-+.++.||. -+.+++++. ......-|.+|+.|+..
T Consensus 233 -rd~t~~~r~~F~~eL~~Ai~eiRaqy-e~~~~~nR~diE~~Y~~ 275 (546)
T KOG0977|consen 233 -RDTTADNREYFKNELALAIREIRAQY-EAISRQNRKDIESWYKR 275 (546)
T ss_pred -hcccccchHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHH
Confidence 1233456666777764 477777775 55667888888887753
No 133
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.77 E-value=6.8e+02 Score=26.42 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 036719 62 NAKARLHQTVAAKEAELATLMAALGELN 89 (601)
Q Consensus 62 ~~k~~L~q~I~~~~~El~~L~~eLg~~~ 89 (601)
.....+.+-|..|++-+..+...+|..+
T Consensus 104 ~ltq~Itqll~~cqk~iq~~~a~~n~~~ 131 (305)
T KOG0809|consen 104 ELTQEITQLLQKCQKLIQRLSASLNQLS 131 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 3455677788888888888888888443
No 134
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=24.52 E-value=8.7e+02 Score=25.83 Aligned_cols=195 Identities=11% Similarity=0.088 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-ccc-cCCCCcHHHHHHHHHHH----------HHH
Q 036719 49 CLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSP-IQT-EKRSTSLKEKLASIAPL----------VED 116 (601)
Q Consensus 49 ~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~-~~~-~~~~~tL~eql~~l~~~----------le~ 116 (601)
...+|..+.++.-.. ....+..+-.++....+.|++|..... +.+ ..-+.+|.+.-..+... +.+
T Consensus 7 a~S~Y~E~ka~lvr~---~~~~~e~~~~~l~~~L~slnLP~~~~~~~~~~~~lP~~l~~~~~~i~~~~~gi~~l~~~~~~ 83 (337)
T cd09234 7 ASSLYSEEKAKLLRE---VVSEIEDKDEELDQFLSSLQLDPLNVMDMDGQFELPQDLVERCAALSVRPDTIKNLVEAMGE 83 (337)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCChhhhhccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 467787766664433 377788888999999999999975200 111 11223455444444432 222
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 117 LRTKKE---ERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLS---LRRITECQTHLRTLQKEKSDRLNRVL 190 (601)
Q Consensus 117 Lrk~K~---eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS---~~~L~~l~~~L~~Lq~EK~~R~~kv~ 190 (601)
|...+. +-+.+...+......=|..+-. -+ |. ..+...++ ..++..|+..|..-.. -=..|.
T Consensus 84 L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~-k~--G~-----~~~S~~~~~~l~~~~~k~~~~L~~A~~----sD~~l~ 151 (337)
T cd09234 84 LSDVYQDVEAMLNEIESLLEEEELQEKEFQE-AV--GK-----RGSSIAHVTELKRELKKYKEAHEKASQ----SNTELH 151 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-Hc--CC-----CCCchhhHHHHHHHHHHHHHHHHHHHH----hHHHHH
Confidence 222222 1222222222222111211111 00 10 00000111 2333344444433333 122344
Q ss_pred HHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 191 EYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLF 263 (601)
Q Consensus 191 ~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~ 263 (601)
..+.........|+.+... +....|+..... . +.....+..|+..+.+|+..+.+|...+.+|+..++
T Consensus 152 ~~~~~~~~~l~lL~~~~~~-l~~~iPs~~~~~---~-~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 152 KAMNLHIANLKLLAGPLDE-LQKKLPSPSLLD---R-PEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHHHHHHcCcHHH-HHhhCCCccccC---C-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555666554322 222234422111 1 234567999999999999999999999999987765
No 135
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=24.31 E-value=1.3e+03 Score=27.63 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 164 SLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVH 197 (601)
Q Consensus 164 S~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~ 197 (601)
+.+.+..++..+..+++.+.+|..-..++...|.
T Consensus 535 ~~~~~~~~k~~l~~~~e~k~~r~~L~~~l~~~i~ 568 (714)
T KOG2220|consen 535 SDEIVRQLKGYLDDLEELKAEREKLEGDLKVDIF 568 (714)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 5567889999999999999999987777777777
No 136
>PF03359 GKAP: Guanylate-kinase-associated protein (GKAP) protein; InterPro: IPR005026 The protein called postsynaptic density (PSD) is a specialised submembranous structure within which synaptic membrane proteins are linked to cytoskeleton and signalling proteins. Guanylate-kinase-associated protein (PSD-95/synapse-associated protein 90) is one of the major components of PSD, and functions as a scaffold protein for various ion channels and associated signalling molecules.; GO: 0007267 cell-cell signaling
Probab=23.99 E-value=5.2e+02 Score=27.99 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHH
Q 036719 228 NISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQA 307 (601)
Q Consensus 228 ~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~l 307 (601)
+|+.+.+..+...+-+-+-+-.++++++..|...+..=+.-.-+..+.-+.|-.+.. | -|+.+
T Consensus 200 ~lpee~~~~ir~avGqa~LL~~qKf~QF~~L~~~~~~~~~~~~~t~~DL~GFWDmv~--------------l---qVedv 262 (357)
T PF03359_consen 200 DLPEEAKGLIRSAVGQARLLMSQKFKQFEGLCQQNENPSGEPPTTCQDLAGFWDMVY--------------L---QVEDV 262 (357)
T ss_pred CCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCcccCCCcchhhhhhHHHHHH--------------H---HHHHH
Confidence 567788999999999999999999999999999887544444444445555544432 1 34455
Q ss_pred HHHHHHHHHHHHHH
Q 036719 308 STEVERLTKLKATR 321 (601)
Q Consensus 308 e~Ev~RLe~lK~~~ 321 (601)
..-.+.|+.||..+
T Consensus 263 ~~kF~~L~~lk~n~ 276 (357)
T PF03359_consen 263 DKKFDELEKLKANN 276 (357)
T ss_pred HHHHHHHHHHHHCC
Confidence 55566666666665
No 137
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.73 E-value=1.3e+03 Score=27.50 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 036719 241 IVKLKAERKIRIQKLKDIVVSLFELWNLMDS 271 (601)
Q Consensus 241 ~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~ 271 (601)
++-++..-.++..+|.+|..+|.+|-..|--
T Consensus 631 ~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 631 LEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3334455566777899999999999888854
No 138
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.49 E-value=4.3e+02 Score=22.97 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHH
Q 036719 165 LRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKL 244 (601)
Q Consensus 165 ~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L 244 (601)
..++..|+..++.+...+..=.....++...+..|...= |-...-.-|.+-|......+...-=.+.++.+...+..|
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~--~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l 82 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA--DDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRL 82 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036719 245 KAERKIRIQKLKDIVVSLFEL 265 (601)
Q Consensus 245 ~e~K~~R~~kl~~L~~~l~~L 265 (601)
+.....-..++.++...|.++
T Consensus 83 ~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 83 ERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 139
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.02 E-value=7.1e+02 Score=24.29 Aligned_cols=22 Identities=23% Similarity=0.284 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 036719 64 KARLHQTVAAKEAELATLMAAL 85 (601)
Q Consensus 64 k~~L~q~I~~~~~El~~L~~eL 85 (601)
+..+...|+.+..+...|-..+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~ 143 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQV 143 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544433
No 140
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=23.01 E-value=1.8e+02 Score=28.21 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHH
Q 036719 50 LEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLR 118 (601)
Q Consensus 50 l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lr 118 (601)
+.+++..+.........+.+.+....+||..|.+.|-.+... .....|....+.++..|..++
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQ------e~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQ------EEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH------HHHHHHHHHHHHHHHHHHHHH
No 141
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=23.01 E-value=9.2e+02 Score=25.55 Aligned_cols=257 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhCCCCCCCCcc-ccCCCCcH
Q 036719 32 GESEAEKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELA-------TLMAALGELNIHSPIQ-TEKRSTSL 103 (601)
Q Consensus 32 G~~e~eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~-------~L~~eLg~~~~~~~~~-~~~~~~tL 103 (601)
|+|+. ..+.-.-....-.+.+...+.+...........|..+...|. .+....|..... .. ...-..++
T Consensus 55 ~lP~~-~~~~~~i~~~gg~~~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~--~~~S~~~~~~l 131 (342)
T cd08915 55 NLPDS-IQHSQEIIEEGGLDNIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWR--RPSSDEAAKEL 131 (342)
T ss_pred CCCch-HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCC--CCChHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHH
Q 036719 104 KEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKS 183 (601)
Q Consensus 104 ~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~ 183 (601)
.+.+..++..|+....-= ..+......+......|++++..+...+++.......--...+..++..+..|..-+.
T Consensus 132 ~~~~~k~~~~L~~A~~sD----~~l~~~~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~ 207 (342)
T cd08915 132 YEKVTKLRGYLEQASNSD----NEVLQCYESIDPNLVLLCGGYKELKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEK 207 (342)
T ss_pred HHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHhcCChHHHHHhCCCccccCCchhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHH---------------HHHHHHHHH
Q 036719 184 DRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEH---------------AIVKLKAER 248 (601)
Q Consensus 184 ~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~---------------~~~~L~e~K 248 (601)
+|...+.++...++.- +|+..-|..... ....+...-
T Consensus 208 eR~~~~~~lk~~~~~d----------------------------dI~~~ll~~~~~~~~~~~e~lf~~eL~kf~~~~~~i 259 (342)
T cd08915 208 ERERFISELEIKSRNN----------------------------DILPKLITEYKKNGTTEFEDLFEEHLKKFDKDLTYV 259 (342)
T ss_pred HHHHHHHHHHHHhhhc----------------------------CCcHHHHHHhhccccchhHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHc------CCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 036719 249 KIRIQKLKDIVVSLFELWNLM------DSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRM 322 (601)
Q Consensus 249 ~~R~~kl~~L~~~l~~LW~~L------~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~m 322 (601)
.+...+=..+...|...|..+ +-....|+.|...... +-+....+..-|..=...+.. |
T Consensus 260 ~~~~~~Q~~ll~~i~~~~~~f~~~~~~~~~~~~r~~~l~~L~~--------------ay~~y~el~~~l~eG~~FY~d-L 324 (342)
T cd08915 260 EKTKKKQIELIKEIDAANQEFSQVKNSNDSLDPREEALQDLEA--------------SYKKYLELKENLNEGSKFYND-L 324 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHH--------------HHHHHHHHHHhHHHHHHHHHH-H
Q ss_pred HHHHHHHHHHHHHHHH
Q 036719 323 KELVLKKRSELEEICK 338 (601)
Q Consensus 323 k~lI~k~r~eLeelWd 338 (601)
...+.+.+.++..+|.
T Consensus 325 ~~~~~~l~~~~~~f~~ 340 (342)
T cd08915 325 IEKVNRLLEECEDFVN 340 (342)
T ss_pred HHHHHHHHHHHHHHHh
No 142
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.99 E-value=8.1e+02 Score=24.91 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcC
Q 036719 305 EQASTEVERLTKLKATRMKELVL-------KKRSELEEICKMTH 341 (601)
Q Consensus 305 ~~le~Ev~RLe~lK~~~mk~lI~-------k~r~eLeelWd~~~ 341 (601)
+.+..||.|.+.-|..=|+..|. ....++.++|....
T Consensus 187 ~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~fl 230 (234)
T cd07665 187 ATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778888888888877776554 46678999998765
No 143
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=22.59 E-value=2.3e+02 Score=26.18 Aligned_cols=72 Identities=25% Similarity=0.270 Sum_probs=38.1
Q ss_pred ccchHHHHHHHHHHHHHHhCCChHH--H----HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 13 TSTSCNALLRELQQIWSDIGESEAE--K----DRILME--LERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAA 84 (601)
Q Consensus 13 ~~~~c~~~l~eL~~IWdEIG~~e~e--R----~~~l~~--le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~e 84 (601)
.+....--+.+|.. .-.|.+-++ | -++|.. .=+.|---=-..=.+.++.+..|.++|..+..|.+.++.+
T Consensus 26 Dd~LvsmSVReLNr--~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E 103 (135)
T KOG4196|consen 26 DDELVSMSVRELNR--HLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRE 103 (135)
T ss_pred HHHHHHhhHHHHHH--HhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555778877 556887653 1 222110 0011211000123456667777777777777777777665
Q ss_pred hC
Q 036719 85 LG 86 (601)
Q Consensus 85 Lg 86 (601)
+.
T Consensus 104 ~d 105 (135)
T KOG4196|consen 104 LD 105 (135)
T ss_pred HH
Confidence 53
No 144
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=22.19 E-value=1e+03 Score=25.81 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 036719 183 SDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKA 246 (601)
Q Consensus 183 ~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e 246 (601)
..-+.++.+|=..|..|=..||++... .+.+.... .+.+| ..+|+.|...+.-|..
T Consensus 205 ~~~la~~a~LE~RL~~LE~~lG~~~~~-----~~~l~~~~--~~~~l-~~~l~~L~~~lslL~~ 260 (388)
T PF04912_consen 205 SQQLARAADLEKRLARLESALGIDSDK-----MSSLDSDT--SSSPL-LPALNELERQLSLLDP 260 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCccc-----cccccccC--CcchH-HHHHHHHHHHHHhcCH
Confidence 345667778888888888999985321 23332211 12233 2457777777777643
No 145
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.12 E-value=1.2e+02 Score=32.99 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCChH
Q 036719 232 STLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNL--------MDSPIQ 274 (601)
Q Consensus 232 ~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~--------L~~p~e 274 (601)
+.|..|...+..+...-......+..+...|..||++ +|+|+.
T Consensus 151 eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg 201 (370)
T PF02994_consen 151 ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEG 201 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCC
Confidence 3455666666666665555666677788899999996 566654
No 146
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.02 E-value=1.1e+03 Score=26.16 Aligned_cols=182 Identities=16% Similarity=0.233 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHH
Q 036719 38 KDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDL 117 (601)
Q Consensus 38 R~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~L 117 (601)
.++.+.++.+++ .-....|.+.....+.|..+|++++.++..|-.+|-..... -.-+...++.+...++.|
T Consensus 36 ~~~~l~q~q~ei-~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~--------l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 36 DDKQLKQIQKEI-AALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD--------LKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHhhHHHHHHHHHHH
Confidence 334555665553 55678899999999999999999999999999988765432 123556777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 118 RTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRR---ITECQTHLRTLQKEKSDRLNRVLEYVN 194 (601)
Q Consensus 118 rk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~---L~~l~~~L~~Lq~EK~~R~~kv~~l~~ 194 (601)
..++.+|...+..+. .-+. ..|.+|.. - . -++.+. -..+..++..+..+..++...+.....
T Consensus 107 ~~q~r~qr~~La~~L---~A~~-r~g~~p~~-~-----l-----l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~ 171 (420)
T COG4942 107 EVQEREQRRRLAEQL---AALQ-RSGRNPPP-A-----L-----LVSPEDAQRSVRLAIYYGALNPARAERIDALKATLK 171 (420)
T ss_pred HHHHHHHHHHHHHHH---HHHH-hccCCCCc-h-----h-----hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 887754444444333 3332 23433321 0 0 112222 134455555566665555554444444
Q ss_pred HHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 195 EVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLF 263 (601)
Q Consensus 195 ~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~ 263 (601)
.|...-..+.-. + .=....+........+|.....+|.+....|-..+.
T Consensus 172 ~l~~~~~~iaae--q------------------~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~ 220 (420)
T COG4942 172 QLAAVRAEIAAE--Q------------------AELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220 (420)
T ss_pred HHHHHHHHHHHH--H------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433332222210 0 001234555555666666666666555555555544
No 147
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.63 E-value=4e+02 Score=26.97 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 036719 56 KVEEAANAKARLHQTVAAKEAELATLMAALGEL 88 (601)
Q Consensus 56 ~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~ 88 (601)
.+++.+.....+.|+|.+.++++..|..-++.-
T Consensus 80 L~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~l 112 (246)
T KOG4657|consen 80 LKTEKEARQMGIEQEIKATQSELEVLRRNLQLL 112 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777888888888887777766654
No 148
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=21.60 E-value=4.9e+02 Score=23.38 Aligned_cols=60 Identities=7% Similarity=0.171 Sum_probs=37.9
Q ss_pred HHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 036719 337 CKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDRWLYAC 399 (601)
Q Consensus 337 Wd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~ 399 (601)
+..++|+.++ ...++....++.....++.+.+..++..+++....-..+.+.++.+...|
T Consensus 53 lr~~G~sL~e---I~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (127)
T TIGR02044 53 ARQVGFSLEE---CKELLNLWNDPNRTSADVKARTLEKVAEIERKISELQSMRDQLEALAQAC 112 (127)
T ss_pred HHHCCCCHHH---HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777644 33444444444344567777777788888887777777777777774443
No 149
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.59 E-value=1.4e+03 Score=27.22 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 226 STNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVS 261 (601)
Q Consensus 226 ~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~ 261 (601)
+..++......++..+.+.-++-.+-+++++.+...
T Consensus 679 s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 679 SIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888777766655555555555443
No 150
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=21.47 E-value=1.4e+03 Score=27.08 Aligned_cols=139 Identities=19% Similarity=0.275 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc-ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 51 EVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQ-TEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFA 129 (601)
Q Consensus 51 ~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~-~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~ 129 (601)
+.++..+...+...+.|.+.++.++.+|..++-. |.- .+...+ ..-..-|..+-...-...|+.|+.+-+
T Consensus 506 ~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~-g~~-~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~------- 576 (722)
T PF05557_consen 506 NELQKEIEELERENERLRQELEELESELEKLTLQ-GEF-NPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENE------- 576 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-T---BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccc-CCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHH-------
Confidence 3455666666666666666666666666553200 111 010001 112344555444444555666665442
Q ss_pred HHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCC
Q 036719 130 DIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHS-ICGVLGL 205 (601)
Q Consensus 130 ~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~-L~~~Lg~ 205 (601)
++..++..+- ++.+...+ .............+..++.++..+++....-.+-|..-...... ++..||+
T Consensus 577 ~L~~~l~~le---~~~~~~~~----~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGy 646 (722)
T PF05557_consen 577 DLLARLRSLE---EGNSQPVD----AVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGY 646 (722)
T ss_dssp HHHHHHHHHT---TTT--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHhcc---cCCCCCcc----cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333332221 11111100 01011123445668899999998875544444333333333333 3445684
No 151
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.01 E-value=1.4e+03 Score=26.82 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCChHH
Q 036719 229 ISNSTLEGLEHAIVKLKAERKIRIQKLKDIVV------SLFELWNLMDSPIQD 275 (601)
Q Consensus 229 lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~------~l~~LW~~L~~p~eE 275 (601)
.+.+-|..+-.+...+++.+.+++.++..-.. .+..+|+.++...+.
T Consensus 6 ~~~~~l~~F~~eRa~iE~~y~k~~~~l~~k~~~~~~~gs~~~~~~~~r~~~~~ 58 (611)
T KOG2398|consen 6 RSTKELADFVRERASIEEDYAKRMGKLAAKAKSYTENGSFAESWLVMRTSTEA 58 (611)
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHH
Confidence 34556777788888888888888888765443 678899988887664
No 152
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.81 E-value=1.1e+03 Score=25.85 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHH
Q 036719 305 EQASTEVERLTKLKATRMKELVLKKRSELEEICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVK 379 (601)
Q Consensus 305 ~~le~Ev~RLe~lK~~~mk~lI~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lk 379 (601)
+.+|+.|+-+.++... =|..++.+|..++.+|-|--.+| + -|-.|.++.|...|.+++
T Consensus 261 erLEeqlNd~~elHq~----Ei~~LKqeLa~~EEK~~Yqs~eR-----a--------Rdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 261 ERLEEQLNDLTELHQN----EIYNLKQELASMEEKMAYQSYER-----A--------RDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHH-----H--------hHHHHHHHHHHHHHHHHH
Confidence 3455555555554432 24567788888898888853332 1 255778899999888887
No 153
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=20.65 E-value=8.6e+02 Score=24.31 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=54.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHcCCcc----ccccCCCccccchHH-HHHHHhhh
Q 036719 362 VDPSELLANIEAQIVKVKDEALSRKDIMDRIDRWLYACEEEKWLEEYNQDDN----RYNAGRGAHINLKRA-ERARVTVS 436 (601)
Q Consensus 362 ~~~eelL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~e~~~LE~~~~D~~----R~~~~RG~h~~Llre-EK~Rk~i~ 436 (601)
....++++..+.-..+|.+....++..+++++....+.. -||-+..++. .+- .|+| .|-.| +|+|.+|.
T Consensus 135 ~~~~e~~~rY~~l~~~L~~l~~~r~~~~~rl~~lr~L~~---lLepf~~~~~~IQ~NLv-tr~g--~l~~El~rmR~Lla 208 (213)
T PF13093_consen 135 DASPEEAERYAELRERLIELSEQRQYLQQRLEYLRRLRS---LLEPFDSPQENIQPNLV-TRDG--ELEAELERMRMLLA 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccccCCccccccccC-CCCc--hHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999977754 3444444433 233 6777 77777 99999887
Q ss_pred hh
Q 036719 437 KI 438 (601)
Q Consensus 437 Kl 438 (601)
|+
T Consensus 209 rV 210 (213)
T PF13093_consen 209 RV 210 (213)
T ss_pred HH
Confidence 74
No 154
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.48 E-value=1.9e+03 Score=28.16 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 37 EKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMA 83 (601)
Q Consensus 37 eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~ 83 (601)
+|.+++..|-. .+.|....+.....+......|..+..++..+-.
T Consensus 170 ~rk~~~d~if~--~~~y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 214 (1311)
T TIGR00606 170 ALKQKFDEIFS--ATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQ 214 (1311)
T ss_pred HHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444432 3567778888888888888888888887777654
No 155
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.41 E-value=1.5e+03 Score=26.91 Aligned_cols=240 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHH-----------
Q 036719 55 RKVEEAANAKARLHQTVAAKEAELATLMA-ALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKE----------- 122 (601)
Q Consensus 55 ~~V~e~~~~k~~L~q~I~~~~~El~~L~~-eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~----------- 122 (601)
+++.+.+..-+++.+.-+.+..++..+.. -+|--.+. .++.....+.......+..-|....+-..
T Consensus 384 tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~--krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~ 461 (716)
T KOG4593|consen 384 TKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDE--KRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYR 461 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchH--HHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 123 ---ERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSI 199 (601)
Q Consensus 123 ---eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L 199 (601)
.+++....+..++..+|+.|........ ....+..+..+.+..|...+..|+.|...=- +.-.
T Consensus 462 ~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~-----~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr---------~~~e 527 (716)
T KOG4593|consen 462 EITGQKKRLEKLEHELKDLQSQLSSREQSLL-----FQREESELLREKIEQYLKELELLEEENDRLR---------AQLE 527 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---------HHHH
Q ss_pred HHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 036719 200 CGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSF 279 (601)
Q Consensus 200 ~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F 279 (601)
...|.-|+..-.+-|-+- +.+++-..=...+..+..|+.+ +..++..+..|=..--.+.+.--.|
T Consensus 528 ~~~l~gd~~~~~~rVl~~--------~~npt~~~~~~~k~~~e~LqaE-------~~~lk~~l~~le~~~~~~~d~~i~~ 592 (716)
T KOG4593|consen 528 RRLLQGDYEENITRVLHM--------STNPTSKARQIKKNRLEELQAE-------LERLKERLTALEGDKMQFRDGEIAV 592 (716)
T ss_pred HHHHhhhhhhhccceeee--------cCCchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccCCcccchhhHH
Q ss_pred HHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 036719 280 SKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELVLKKRSELEEICKMTH 341 (601)
Q Consensus 280 ~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~k~r~eLeelWd~~~ 341 (601)
...+.+ ..-+.+++.||...+ +|-++||+++..+..+.-+-|-.+.
T Consensus 593 ~s~~~~---------------~~ev~qlk~ev~s~e-kr~~rlk~vF~~ki~eFr~ac~sL~ 638 (716)
T KOG4593|consen 593 HSLLAF---------------SKEVAQLKKEVESAE-KRNQRLKEVFASKIQEFRDACYSLL 638 (716)
T ss_pred hhhhcc---------------hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh
No 156
>TIGR01558 sm_term_P27 phage terminase, small subunit, putative, P27 family. Members tend to be adjacent to the phage terminase large subunit gene.
Probab=20.30 E-value=3.7e+02 Score=23.83 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 036719 65 ARLHQTVAAKEAELATLMAALGELNIH 91 (601)
Q Consensus 65 ~~L~q~I~~~~~El~~L~~eLg~~~~~ 91 (601)
.-.+....++.+++..++.+||++|..
T Consensus 69 nPa~~i~~~a~~~~~~l~~elGLtP~s 95 (116)
T TIGR01558 69 NPALTVVEDAFKQLRSIGSALGLTPSS 95 (116)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 345666788899999999999998764
Done!