Query 036719
Match_columns 601
No_of_seqs 253 out of 499
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:34:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrx_A Protein regulator of cy 100.0 1.5E-38 5.1E-43 287.0 14.4 126 376-508 3-130 (130)
2 1i84_S Smooth muscle myosin he 80.9 3.5 0.00012 49.8 9.2 10 369-378 1154-1163(1184)
3 1i84_S Smooth muscle myosin he 76.3 17 0.00058 43.8 13.1 35 107-141 908-942 (1184)
4 3ghg_A Fibrinogen alpha chain; 74.4 4.7 0.00016 43.6 6.6 88 101-197 53-141 (562)
5 3okq_A BUD site selection prot 70.9 58 0.002 29.1 14.7 128 237-414 12-139 (141)
6 1go4_E MAD1 (mitotic arrest de 66.2 27 0.00093 29.5 8.3 41 225-265 5-45 (100)
7 1deq_A Fibrinogen (alpha chain 64.1 31 0.0011 35.8 9.9 80 101-189 56-136 (390)
8 2lw1_A ABC transporter ATP-bin 59.9 26 0.00089 28.7 7.1 29 63-91 23-51 (89)
9 1go4_E MAD1 (mitotic arrest de 54.6 55 0.0019 27.6 8.1 44 163-208 9-52 (100)
10 3na7_A HP0958; flagellar bioge 52.7 1.7E+02 0.0058 28.4 23.5 112 54-204 17-128 (256)
11 3gp4_A Transcriptional regulat 49.6 1.4E+02 0.0047 26.4 10.8 111 262-400 5-115 (142)
12 2qyw_A Vesicle transport throu 48.9 1.1E+02 0.0039 25.5 9.5 56 62-120 45-100 (102)
13 2v4h_A NF-kappa-B essential mo 47.3 1.2E+02 0.004 26.0 9.1 71 15-86 34-107 (110)
14 1nfn_A Apolipoprotein E3; lipi 40.7 1.7E+02 0.0058 27.3 10.3 68 54-131 91-158 (191)
15 1deq_A Fibrinogen (alpha chain 40.6 2.2E+02 0.0075 29.6 11.6 32 55-86 67-98 (390)
16 3ol1_A Vimentin; structural ge 39.3 1.8E+02 0.0063 24.9 10.6 106 10-136 11-118 (119)
17 3vkg_A Dynein heavy chain, cyt 37.3 2.9E+02 0.0099 37.0 14.6 92 101-197 2010-2101(3245)
18 3ra3_B P2F; coiled coil domain 35.1 46 0.0016 20.6 3.4 21 61-81 6-26 (28)
19 3o0z_A RHO-associated protein 35.0 2.4E+02 0.0082 25.9 9.9 75 100-186 64-138 (168)
20 2lw9_A Unconventionnal myosin- 34.8 66 0.0023 23.4 4.7 39 301-339 5-43 (51)
21 3vkg_A Dynein heavy chain, cyt 32.5 7.9E+02 0.027 33.0 17.5 94 162-265 2010-2103(3245)
22 1a92_A Delta antigen; leucine 32.3 84 0.0029 22.8 4.9 36 469-506 4-39 (50)
23 4dci_A Uncharacterized protein 32.3 2.8E+02 0.0096 25.0 10.0 75 58-138 32-106 (150)
24 2xs1_A Programmed cell death 6 27.3 6.9E+02 0.024 27.9 27.6 263 32-338 418-702 (704)
25 3oja_B Anopheles plasmodium-re 27.0 6.1E+02 0.021 27.1 15.9 79 165-263 455-533 (597)
26 3na7_A HP0958; flagellar bioge 26.8 4.3E+02 0.015 25.4 21.1 112 53-196 51-162 (256)
27 2yy0_A C-MYC-binding protein; 25.9 1.3E+02 0.0044 22.2 5.2 30 114-143 21-50 (53)
28 1m1j_A Fibrinogen alpha subuni 25.9 74 0.0025 33.9 5.3 94 101-203 54-148 (491)
29 3jsv_C NF-kappa-B essential mo 25.6 2.3E+02 0.0079 23.5 7.2 70 16-86 13-85 (94)
30 1zke_A Hypothetical protein HP 25.3 2.6E+02 0.0088 22.3 8.3 51 326-383 14-69 (83)
31 3ghg_A Fibrinogen alpha chain; 25.1 1.5E+02 0.0051 32.2 7.5 33 55-87 64-96 (562)
32 3rrk_A V-type ATPase 116 kDa s 24.9 5.3E+02 0.018 25.8 16.3 165 17-203 65-267 (357)
33 2zqm_A Prefoldin beta subunit 24.3 2.5E+02 0.0087 23.3 7.9 100 166-265 6-110 (117)
34 3r2p_A Apolipoprotein A-I; amp 23.7 83 0.0028 29.1 4.9 30 58-87 78-107 (185)
35 1vmg_A Hypothetical protein SS 23.3 2.3E+02 0.0077 23.4 7.0 66 21-89 17-85 (95)
36 3onj_A T-snare VTI1; helix, HA 23.0 3.2E+02 0.011 22.4 9.5 20 102-121 69-89 (97)
37 3lay_A Zinc resistance-associa 23.0 4.4E+02 0.015 24.2 11.5 63 227-317 66-128 (175)
38 1yf2_A Type I restriction-modi 22.7 95 0.0032 31.5 5.6 41 272-326 377-417 (425)
39 2yy0_A C-MYC-binding protein; 22.7 1.5E+02 0.0051 21.9 5.1 30 57-86 21-50 (53)
40 2dfs_A Myosin-5A; myosin-V, in 22.4 1E+03 0.035 28.1 16.6 15 171-185 996-1010(1080)
41 2jo8_A Serine/threonine-protei 22.3 76 0.0026 23.4 3.3 27 367-393 22-49 (51)
42 3mq9_A Bone marrow stromal ant 22.1 6.7E+02 0.023 26.0 12.9 44 41-84 374-419 (471)
43 1nfn_A Apolipoprotein E3; lipi 22.1 4.7E+02 0.016 24.2 13.2 34 109-145 92-125 (191)
44 1l8d_A DNA double-strand break 22.0 3.4E+02 0.012 22.4 11.1 88 51-142 13-101 (112)
45 1gs9_A Apolipoprotein E, APOE4 20.9 4.7E+02 0.016 23.7 10.2 65 55-129 92-156 (165)
46 3oja_B Anopheles plasmodium-re 20.8 7.8E+02 0.027 26.2 18.0 35 54-88 462-496 (597)
47 2q0o_C Probable transcriptiona 20.3 1.9E+02 0.0066 24.4 5.8 35 174-208 66-100 (107)
48 4dzn_A Coiled-coil peptide CC- 20.0 1.5E+02 0.0053 19.0 3.9 18 66-83 6-23 (33)
49 3cuq_A Vacuolar-sorting protei 20.0 1.8E+02 0.0062 28.2 6.5 44 47-90 13-56 (234)
No 1
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=100.00 E-value=1.5e-38 Score=286.99 Aligned_cols=126 Identities=26% Similarity=0.514 Sum_probs=116.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHcCCccccccCCCccccchHHHHHHHhhhh-hHHHHHHHHHHHHHHHH
Q 036719 376 VKVKDEALSRKDIMDRIDRWLYACEEEKWLEEYNQDDNRYNAGRGAHINLKRAERARVTVSK-IPAIVDNLINRTLAWEE 454 (601)
Q Consensus 376 ~~lke~~~~~k~Il~~vekw~~l~~e~~~LE~~~~D~~R~~~~RG~h~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~ 454 (601)
++|+++|.+|++||++|++|..+|.+...||+|++|||||+ |||| +|++|||+|++|+| ||+|++.|+++|.+||.
T Consensus 3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~D~sR~~-~Rgg--~LlreEK~Rk~i~k~lP~l~~~L~~~i~~wE~ 79 (130)
T 3nrx_A 3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFT-NRGG--NLLKEEKQRAKLQKMLPKLEEELKARIELWEQ 79 (130)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCChhhhh-ccch--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999 8999 99999999999998 99999999999999999
Q ss_pred HcCCceEECCccHHHHH-HHHHHHHHhhHHHHHHHHHHHhhhHHHhhhhhhccCC
Q 036719 455 EKKIFFLYDGVRLVSIL-DDYKLTRVQREEEKKRYRDQKKMQDLLLTEKEAIYGS 508 (601)
Q Consensus 455 e~g~~Fl~dG~~ll~~l-ee~~~~r~eKE~ek~r~R~~kk~~~~~~~e~e~~~Gs 508 (601)
++|.||+|||++|+++| ++|+.+|++||+||+| |++||. +++|+||+|||
T Consensus 80 e~g~~Flv~G~~~le~l~eqw~~~r~~KE~eK~~-R~~kk~---~~~e~e~~~gs 130 (130)
T 3nrx_A 80 EHSKAFMVNGQKFMEYVAEQWEMHRLEKERAKQE-RQLKNK---KQTETEMLYGS 130 (130)
T ss_dssp HHTSCCEETTEEHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHCC
T ss_pred HcCCeeeEcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHhccCC
Confidence 99999999999999999 5699999999999999 999998 48999999998
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=80.94 E-value=3.5 Score=49.76 Aligned_cols=10 Identities=0% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 036719 369 ANIEAQIVKV 378 (601)
Q Consensus 369 ~~~E~eI~~l 378 (601)
+.+..+|..+
T Consensus 1154 e~L~~~Ieel 1163 (1184)
T 1i84_S 1154 EALKTELEDT 1163 (1184)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333334333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.33 E-value=17 Score=43.83 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036719 107 LASIAPLVEDLRTKKEERMKQFADIKAQIEKISGE 141 (601)
Q Consensus 107 l~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~e 141 (601)
+..+...++.+..++.+-..++.++..++..+-..
T Consensus 908 l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~ 942 (1184)
T 1i84_S 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER 942 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 4
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.39 E-value=4.7 Score=43.56 Aligned_cols=88 Identities=13% Similarity=0.184 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHH-HHHHHHHHHH
Q 036719 101 TSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRIT-ECQTHLRTLQ 179 (601)
Q Consensus 101 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~-~l~~~L~~Lq 179 (601)
++|.++...+...|++||.+.++-.+..++...-...+++.|...-... .+.+-..-++. +|+.+++.|+
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~---------~dNdNtynE~S~ELRRrIqyLK 123 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSA---------NNRDNTYNRVSEDLRSRIEVLK 123 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHH---------HHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhh---------hccchhHHHHHHHHHHHHHHHH
Confidence 3588888999999999999998888888888888888888776432110 01111222222 5556666665
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036719 180 KEKSDRLNRVLEYVNEVH 197 (601)
Q Consensus 180 ~EK~~R~~kv~~l~~~I~ 197 (601)
.+...-+..+..|.+.|.
T Consensus 124 ekVdnQlsnIrvLQsnLe 141 (562)
T 3ghg_A 124 RKVIEKVQHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555554444443333333
No 5
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=70.95 E-value=58 Score=29.12 Aligned_cols=128 Identities=14% Similarity=0.202 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHH
Q 036719 237 LEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTK 316 (601)
Q Consensus 237 L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~ 316 (601)
...-..+|...-..-+.++.+|..-|..| |... +.+|+.| +...++.+..++..+..
T Consensus 12 ~~~~k~kL~~~sd~LvtkVDDLQD~VE~L----------RkDV--~~RgvrP-----------~~~ql~~v~kdi~~a~~ 68 (141)
T 3okq_A 12 MEKSQTELGDLSDTLLSKVDDLQDVIEIM----------RKDV--AERRSQP-----------AKKKLETVSKDLENAQA 68 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--HHHCCCC-----------CHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhHHHHHHHHH----------HHHH--HHcCCCC-----------CHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555444 2222 3455554 37788888888888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 036719 317 LKATRMKELVLKKRSELEEICKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDRWL 396 (601)
Q Consensus 317 lK~~~mk~lI~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vekw~ 396 (601)
-=.. |+.+|...+--+..+|..= -+++ +.--+.|...|.-+..|++-+..-.+.|.+|+++
T Consensus 69 eL~~-m~~~i~~ekP~WKKiWE~E---------L~~V--------ceEQqfl~~QedL~~DL~eDL~ka~etf~lVeq~- 129 (141)
T 3okq_A 69 DVLK-LQEFIDTEKPHWKKTWEAE---------LDKV--------CEEQQFLTLQEELILDLKEDLGKALETFDLIKLC- 129 (141)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHH-HHHHHHHcCchhHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5443 7889988888888888631 1111 1224557777778888888889999999999988
Q ss_pred HHhHHHHHHHHHcCCccc
Q 036719 397 YACEEEKWLEEYNQDDNR 414 (601)
Q Consensus 397 ~l~~e~~~LE~~~~D~~R 414 (601)
-++-.++|+|
T Consensus 130 --------~~eq~k~~~~ 139 (141)
T 3okq_A 130 --------CEEQEKNPSR 139 (141)
T ss_dssp --------C---------
T ss_pred --------HHHHHhcccC
Confidence 3455677776
No 6
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.17 E-value=27 Score=29.49 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 225 HSTNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFEL 265 (601)
Q Consensus 225 ~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~L 265 (601)
+++++|.+.+..|...++.|+.+...-.+.+..|-.+|...
T Consensus 5 ~~~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 5 QSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677999999999999999999988888888888888654
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.13 E-value=31 Score=35.84 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=49.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCc-HHHHHHHHHHHHHHH
Q 036719 101 TSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLS-LRRITECQTHLRTLQ 179 (601)
Q Consensus 101 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS-~~~L~~l~~~L~~Lq 179 (601)
.+|.++...+...++.|+....+-.+...+...-+..+.+.+...-... .+.+-. .+-.++|+.++..|+
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~---------~dndn~~~e~s~eLe~~i~~lk 126 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKA---------NNNDNTFKQINEDLRSRIEILR 126 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---------ccchHHHHHHHHHHHHHHHHHH
Confidence 4677777888888998888887777777777777777777776543221 111212 233445666666666
Q ss_pred HHHHHHHHHH
Q 036719 180 KEKSDRLNRV 189 (601)
Q Consensus 180 ~EK~~R~~kv 189 (601)
.....-+..+
T Consensus 127 ~~V~~q~~~i 136 (390)
T 1deq_A 127 RKVIEQVQRI 136 (390)
T ss_pred HHHHHHhHHH
Confidence 5554444433
No 8
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=59.92 E-value=26 Score=28.69 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 036719 63 AKARLHQTVAAKEAELATLMAALGELNIH 91 (601)
Q Consensus 63 ~k~~L~q~I~~~~~El~~L~~eLg~~~~~ 91 (601)
.-+.|-..|+.+++++..|-..|+.|.+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y 51 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFF 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 34568888999999999999999999865
No 9
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=54.58 E-value=55 Score=27.63 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 036719 163 LSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFG 208 (601)
Q Consensus 163 lS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~ 208 (601)
+|.+.+..++..|+.|+.|...=...+..+-..+-..+ |.-||.
T Consensus 9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~Gd~~ 52 (100)
T 1go4_E 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQGDYD 52 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCSCCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccC
Confidence 48899999999999999999887777777777776553 544554
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=52.71 E-value=1.7e+02 Score=28.39 Aligned_cols=112 Identities=9% Similarity=0.102 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 54 RRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKA 133 (601)
Q Consensus 54 ~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~ 133 (601)
...++.....+..+-..|+++..+++.+- ..+..+...++.+.......-.++..+..
T Consensus 17 D~~i~~l~~~~~~lp~el~~le~~~~~l~----------------------~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 17 DKEIDSLEPLIREKRKDLDKALNDKEAKN----------------------KAILNLEEEKLALKLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666655443 35566777778888887777788888888
Q ss_pred HHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 036719 134 QIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLG 204 (601)
Q Consensus 134 qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg 204 (601)
.|.+.-..|... . +.+.+..|...++.+..+....-..+.++...+..+-..+.
T Consensus 75 ri~~~~~~l~~v-------------~----~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 75 KIASIQKKMSEI-------------K----SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128 (256)
T ss_dssp HHHHHHHHHHHC-------------S----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-------------C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777321 0 56778888888998888888888888888888877755543
No 11
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=49.55 E-value=1.4e+02 Score=26.38 Aligned_cols=111 Identities=9% Similarity=0.060 Sum_probs=54.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 036719 262 LFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELVLKKRSELEEICKMTH 341 (601)
Q Consensus 262 l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~k~r~eLeelWd~~~ 341 (601)
|.++-.++|++.....-+... ..+.|..-.-..--.|+.+.|..+.. ... +..++
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~~-GLl~p~~r~~~g~R~Y~~~dl~~l~~----I~~--------------------lr~~G 59 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYERI-GLIPPIHRNESGVRKFGAEDLRWILF----TRQ--------------------MRRAG 59 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH-TSSCCCCBCTTSCBCBCHHHHHHHHH----HHH--------------------HHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC-CCCCCCcCCCCCCeeeCHHHHHHHHH----HHH--------------------HHHcC
Confidence 445566777777765544433 23333222223334577766655421 111 12345
Q ss_pred CCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhH
Q 036719 342 IEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDRWLYACE 400 (601)
Q Consensus 342 ~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~ 400 (601)
++.++ ...++.....|.....++.+.++.++..+.+....-..+++.++.....|+
T Consensus 60 ~sL~e---Ik~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 60 LSIEA---LIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp CCHHH---HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55432 222333332332234555666666666666666666666666666555554
No 12
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=48.88 E-value=1.1e+02 Score=25.49 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHH
Q 036719 62 NAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTK 120 (601)
Q Consensus 62 ~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~ 120 (601)
..|...+..|.....|...|...+.+..-. .+...-.++..++..++..|+.|+++
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~---~p~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRY---APLTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555556666665555542211 00011235666777777777766654
No 13
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=47.30 E-value=1.2e+02 Score=25.97 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 036719 15 TSCNALLRELQQIWSDIGESEAEKDR---ILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALG 86 (601)
Q Consensus 15 ~~c~~~l~eL~~IWdEIG~~e~eR~~---~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg 86 (601)
+.|..+|..-+.-.+++......++. .+.-|+ .-.++|+.=..-++.-|.++...+..+..+++.|...+.
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLk-aQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLK-AQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34556777777778888776665554 222233 346899998999999999999999999999998887654
No 14
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=40.68 E-value=1.7e+02 Score=27.31 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 54 RRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADI 131 (601)
Q Consensus 54 ~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l 131 (601)
.+.-.+.+..+.++.+.+.+++..|.-...+|....- ..+-+.-..+.|..++|+.+...++.+|...
T Consensus 91 ~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~----------~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~ 158 (191)
T 1nfn_A 91 ARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLG----------QSTEELRVRLASHLRKLRKRLLRDADDLQKR 158 (191)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455667778889999999999999998888865432 2344455678899999999998888766543
No 15
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.61 E-value=2.2e+02 Score=29.55 Aligned_cols=32 Identities=0% Similarity=0.098 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 036719 55 RKVEEAANAKARLHQTVAAKEAELATLMAALG 86 (601)
Q Consensus 55 ~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg 86 (601)
..|++.....+.+.+.-.+.-.-+..|...|.
T Consensus 67 ~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk 98 (390)
T 1deq_A 67 SRINKLRDSLFNYQKNSKDSNTLTKNIVELMR 98 (390)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555554444444444444433344444333
No 16
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.35 E-value=1.8e+02 Score=24.91 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=58.7
Q ss_pred cccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036719 10 SVRTSTSCNALLRELQQIWSDIGESEAEKDRILMELE--RECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGE 87 (601)
Q Consensus 10 ~~~~~~~c~~~l~eL~~IWdEIG~~e~eR~~~l~~le--~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~ 87 (601)
|+.........+..|+.-.+.++. ++.++..++. +...+-|+.+.+.+...|..+-..|..++..+....-
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~~~---e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l---- 83 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQLTN---DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASL---- 83 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHH----
Confidence 344556666667777666666554 3444433332 2334557788888777776665555555554433221
Q ss_pred CCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 88 LNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIE 136 (601)
Q Consensus 88 ~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~ 136 (601)
..+-|-.++..+...+.-|++-.+ .++.+++++|+
T Consensus 84 -----------~r~dLE~~iesL~eEl~FLKk~he---eEl~eLq~qi~ 118 (119)
T 3ol1_A 84 -----------ARLDLERKVESLQEEIAFLKKLHE---EEIQELQAQIQ 118 (119)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHSCC-
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhc
Confidence 112344566677777777777664 45555555543
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.26 E-value=2.9e+02 Score=36.99 Aligned_cols=92 Identities=13% Similarity=0.216 Sum_probs=60.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHH
Q 036719 101 TSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQK 180 (601)
Q Consensus 101 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~ 180 (601)
.|+++.++.+...++..+.+..+-..++.++..++..+-++......... .+ -.+......+|+.-...+..|..
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~-~L----~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE-QI----KTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHhhhh
Confidence 79999999999999988888888888888888888887776543211000 00 01224466777777777888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036719 181 EKSDRLNRVLEYVNEVH 197 (601)
Q Consensus 181 EK~~R~~kv~~l~~~I~ 197 (601)
|+.+=.+.+.++...+.
T Consensus 2085 Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2085 ERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH
Confidence 87655555544444333
No 18
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.13 E-value=46 Score=20.64 Aligned_cols=21 Identities=48% Similarity=0.566 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036719 61 ANAKARLHQTVAAKEAELATL 81 (601)
Q Consensus 61 ~~~k~~L~q~I~~~~~El~~L 81 (601)
...-++|.|+|+.++-|++.|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 445678899999999888876
No 19
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=35.01 E-value=2.4e+02 Score=25.93 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=55.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHH
Q 036719 100 STSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQ 179 (601)
Q Consensus 100 ~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq 179 (601)
...|-+.+..+...|+.=|.-...+-.-+.+++..|..|+.+|........ =.......|+..+..|+
T Consensus 64 k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~------------k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE------------KVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 356777888889999988888888888888999999999998864321100 02334457888888888
Q ss_pred HHHHHHH
Q 036719 180 KEKSDRL 186 (601)
Q Consensus 180 ~EK~~R~ 186 (601)
++++...
T Consensus 132 Ke~a~~e 138 (168)
T 3o0z_A 132 KEKNNLE 138 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 8888877
No 20
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=34.83 E-value=66 Score=23.37 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 301 TEVIEQASTEVERLTKLKATRMKELVLKKRSELEEICKM 339 (601)
Q Consensus 301 ~~~I~~le~Ev~RLe~lK~~~mk~lI~k~r~eLeelWd~ 339 (601)
.+-|-.++.|+++|+..|...+..|-...+.+|..+-|.
T Consensus 5 ~EEILRLErEIE~Lqrqke~~~~~L~e~s~~eL~~~RD~ 43 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRDQ 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 356778999999999999999998888888888776653
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.54 E-value=7.9e+02 Score=33.00 Aligned_cols=94 Identities=5% Similarity=0.084 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHH
Q 036719 162 DLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAI 241 (601)
Q Consensus 162 dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~ 241 (601)
.|-.++|.+++..+...+.+...-.+++.++-..|..|-..+.. .+.+.. .+. .........|++-..++
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~----~~~ek~-~L~-----~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT----LIRETE-QIK-----TESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHH-----HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHH-----HHHHHHHHHHHHHHHHH
Confidence 34555566666555555555544444444444444444333321 000000 000 00112345666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 242 VKLKAERKIRIQKLKDIVVSLFEL 265 (601)
Q Consensus 242 ~~L~e~K~~R~~kl~~L~~~l~~L 265 (601)
..|..+|..=.+.+..+..++..|
T Consensus 2080 ~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHHHHHHHHhc
Confidence 777777765555556565555544
No 22
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=32.34 E-value=84 Score=22.79 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhHHHhhhhhhcc
Q 036719 469 SILDDYKLTRVQREEEKKRYRDQKKMQDLLLTEKEAIY 506 (601)
Q Consensus 469 ~~lee~~~~r~eKE~ek~r~R~~kk~~~~~~~e~e~~~ 506 (601)
++|++|-..|...|+-.+..|.-||.-. ..|.|.++
T Consensus 4 e~LeqWv~~Rkk~eeler~lrk~kk~iK--klEdeNPW 39 (50)
T 1a92_A 4 DILEQWVSGRKKLEELERDLRKLKKKIK--KLEEDNPW 39 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCc
Confidence 6789998877777765555554444322 34777654
No 23
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=32.32 E-value=2.8e+02 Score=24.97 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 58 EEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEK 137 (601)
Q Consensus 58 ~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~ 137 (601)
.+......++-.+++.+.-+...+..++.-.... ..+....+++..++.+++.-+.++.++.+++..-..+++.
T Consensus 32 ~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~------~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~ 105 (150)
T 4dci_A 32 REISNGIANADQQLAQLEQEGQTVVDQVRRQSAN------PLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVRE 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455666677777777777777776632211 1223456778888888876665555555555544444444
Q ss_pred H
Q 036719 138 I 138 (601)
Q Consensus 138 L 138 (601)
|
T Consensus 106 L 106 (150)
T 4dci_A 106 L 106 (150)
T ss_dssp S
T ss_pred C
Confidence 3
No 24
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=27.25 E-value=6.9e+02 Score=27.88 Aligned_cols=263 Identities=10% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhCCC--CCCCCccccCCCCc
Q 036719 32 GESEAEKDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELA-------TLMAALGEL--NIHSPIQTEKRSTS 102 (601)
Q Consensus 32 G~~e~eR~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~-------~L~~eLg~~--~~~~~~~~~~~~~t 102 (601)
|+|+.=+++.-.-....-.+-+...+......+......+..+...|. .+....|.. ..+ ...-..+
T Consensus 418 ~lP~~l~~~~~~i~~~~g~~~l~~~~~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~w~r~~----S~~~~~~ 493 (704)
T 2xs1_A 418 TVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTP----SNELYKP 493 (704)
T ss_dssp SCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCSCC----HHHHHHH
T ss_pred CCCHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC----cHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHH
Q 036719 103 LKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEK 182 (601)
Q Consensus 103 L~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK 182 (601)
|.+.+..++..|+....-- ..+......+...-..|++++..+...++.............+..|+..+..+..-+
T Consensus 494 l~~~~~~~~~~l~~A~~sD----~~v~~~~~~~~~~l~~L~~~~~~l~~~~p~~~~~~~~~~~~~~~~L~~~l~~l~~l~ 569 (704)
T 2xs1_A 494 LRAEGTNFRTVLDKAVQAD----GQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVK 569 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHTTHHHHHHHTSCHHHHHHTSCCCCCCGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHhCCCHHHHHhhCccCCCcccccchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 183 SDRLNRVLEYVN-------EVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKLKAERKIRIQKL 255 (601)
Q Consensus 183 ~~R~~kv~~l~~-------~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L~e~K~~R~~kl 255 (601)
.+|...+.++.. .+.......|...+..+ --+.|.+..+.+...-.+...+=
T Consensus 570 ~~R~~~~~~lk~~~ddI~~~ll~~~~~~~~~~~e~l---------------------f~~eL~k~~~~~~~~i~~~~~~Q 628 (704)
T 2xs1_A 570 KEREGLENDLKSVNFDMTSKFLTALAQDGVINEEAL---------------------SVTELDRVYGGLTTKVQESLKKQ 628 (704)
T ss_dssp HHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCCHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCccHHHHHHHhhcccccHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHc------CCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 256 KDIVVSLFELWNLM------DSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELVLKK 329 (601)
Q Consensus 256 ~~L~~~l~~LW~~L------~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~k~ 329 (601)
..+..+|...|..+ +-...+|+.+...... +-+....+..-|+.=...... |.+++.+.
T Consensus 629 ~~ll~~i~~~~~~f~~~~~~~~~~~~re~~~~~l~~--------------ay~~y~el~~~l~eG~~FY~~-L~~~~~~~ 693 (704)
T 2xs1_A 629 EGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLAT--------------AYDNFVELVANLKEGTKFYNE-LTEILVRF 693 (704)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--------------HHHHHHHHHHhHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHH
Q 036719 330 RSELEEICK 338 (601)
Q Consensus 330 r~eLeelWd 338 (601)
+.++.+++.
T Consensus 694 ~~~~~df~~ 702 (704)
T 2xs1_A 694 QNKCSDIVF 702 (704)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.96 E-value=6.1e+02 Score=27.12 Aligned_cols=79 Identities=10% Similarity=0.116 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCCCccCCCCCCCCCCCHHHHHHHHHHHHHH
Q 036719 165 LRRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFGQTVSDVHPSLHGTAMGHSTNISNSTLEGLEHAIVKL 244 (601)
Q Consensus 165 ~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~~~v~ev~~sl~~~~~~~~~~lS~~~L~~L~~~~~~L 244 (601)
.+.+.+++..+..|+.+...-...+..+...|......+....... ....+.+.+.++.+
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~--------------------~~~~~~l~~~~~~~ 514 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGL--------------------ARSSDNLNKVFTHL 514 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS--------------------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccc--------------------CCHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888877777543221 01235666777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036719 245 KAERKIRIQKLKDIVVSLF 263 (601)
Q Consensus 245 ~e~K~~R~~kl~~L~~~l~ 263 (601)
++..+....+++.....+.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~ 533 (597)
T 3oja_B 515 KERQAFKLRETQARRTEAD 533 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHhhh
Confidence 6666666666665555543
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.80 E-value=4.3e+02 Score=25.39 Aligned_cols=112 Identities=11% Similarity=0.161 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 53 YRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFADIK 132 (601)
Q Consensus 53 ~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~ 132 (601)
.+..++..+....++-..|+.+.+.+...-..|+.-... ..+.++...++.+.++....-.++.++.
T Consensus 51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~-------------kE~~aL~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSE-------------RELRSLNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666677777777777777777777666532111 1566677777777777766666667777
Q ss_pred HHHHHHHHhhCCCCCCCcccccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 133 AQIEKISGEISGYDHLSNSLINSLSLEEEDLSLRRITECQTHLRTLQKEKSDRLNRVLEYVNEV 196 (601)
Q Consensus 133 ~qi~~L~~eL~~~~~~~~e~l~~~~~~e~dlS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I 196 (601)
.+++.+-..+.. ....+..++..+..++.+....+..+..-...+
T Consensus 118 e~ie~~~~~l~~-------------------~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 118 NEIKRKSEKQED-------------------LKKEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555431 234555666666666666665555444433333
No 27
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.89 E-value=1.3e+02 Score=22.24 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036719 114 VEDLRTKKEERMKQFADIKAQIEKISGEIS 143 (601)
Q Consensus 114 le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~ 143 (601)
++.|+.+..+-..++..+..+++.+|+.|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555666777777777777664
No 28
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.88 E-value=74 Score=33.85 Aligned_cols=94 Identities=11% Similarity=0.116 Sum_probs=57.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccCccCCC-CcHHHHHHHHHHHHHHH
Q 036719 101 TSLKEKLASIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYDHLSNSLINSLSLEEED-LSLRRITECQTHLRTLQ 179 (601)
Q Consensus 101 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~e~l~~~~~~e~d-lS~~~L~~l~~~L~~Lq 179 (601)
++|..+...+...+++|+....+-.+...+...-+..+.+.+...-... .+.+ .=.+-.++|+.++..|+
T Consensus 54 glL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~---------~dndn~~~e~S~eLe~ri~yIK 124 (491)
T 1m1j_A 54 GIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGA---------QQLDENYGHVSTELRRRIVTLK 124 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhh---------ccchhHHHHHHHHHHHHHHHHH
Confidence 4678888899999999998887776666666666666666665432110 0111 11233456677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 036719 180 KEKSDRLNRVLEYVNEVHSICGVL 203 (601)
Q Consensus 180 ~EK~~R~~kv~~l~~~I~~L~~~L 203 (601)
...+.-+..+..|.+.|.++...|
T Consensus 125 ~kVd~qi~~IrvLq~~l~~q~skI 148 (491)
T 1m1j_A 125 QRVATQVNRIKALQNSIQEQVVEM 148 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655555555555554443
No 29
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=25.64 E-value=2.3e+02 Score=23.48 Aligned_cols=70 Identities=13% Similarity=0.235 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 036719 16 SCNALLRELQQIWSDIGESEAEKDR---ILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALG 86 (601)
Q Consensus 16 ~c~~~l~eL~~IWdEIG~~e~eR~~---~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg 86 (601)
.|..+|.--+..-|++......... .+.-| +.-..+|+.=..-++.-|.+++..+..+..++..|...+.
T Consensus 13 ~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vL-k~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~ 85 (94)
T 3jsv_C 13 QAEEALVAKQELIDKLKEEAEQHKIVMETVPVL-KAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556677777778888776553322 22222 3456899998999999999999999999999998887654
No 30
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=25.34 E-value=2.6e+02 Score=22.28 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHcCCCccchHHHhhhhhhhcCCC-----CCcHHHHHHHHHHHHHHHHHHh
Q 036719 326 VLKKRSELEEICKMTHIEPDTSTAAEKSNAMIDSGL-----VDPSELLANIEAQIVKVKDEAL 383 (601)
Q Consensus 326 I~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~-----~~~eelL~~~E~eI~~lke~~~ 383 (601)
|+..+.||+-+-+...+|-. .+-++.-|. -.+...|++++.||.+||+...
T Consensus 14 IE~~q~eI~~lL~~AkiSl~-------DyImiKRGS~DmPe~L~~~~~~QideeV~~LKe~Id 69 (83)
T 1zke_A 14 IEDSQNEIEMLLKLANLSLG-------DFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELIN 69 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCHH-------HHHHHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhH-------HHhheeccCccCccccCHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999842 112233222 2456779999999999998654
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.11 E-value=1.5e+02 Score=32.17 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036719 55 RKVEEAANAKARLHQTVAAKEAELATLMAALGE 87 (601)
Q Consensus 55 ~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~ 87 (601)
..|++.+..-+++.+.-.+...-...+...|..
T Consensus 64 krINELKnqLEdlsKnsKdseqy~k~~~E~Lr~ 96 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKNNKDSHSLTTNIMEILRG 96 (562)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence 455555555555555555555555566655554
No 32
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.94 E-value=5.3e+02 Score=25.78 Aligned_cols=165 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCChHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh-CCC
Q 036719 17 CNALLRELQQIWSDIGESEAEK-DRI---LMELERECLEVYRRKVEEAANAKARLHQTVAAKEAE---LATLMAAL-GEL 88 (601)
Q Consensus 17 c~~~l~eL~~IWdEIG~~e~eR-~~~---l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~E---l~~L~~eL-g~~ 88 (601)
|...+.++..+++.++...... ..+ +.++++. ++-+...|.+....+..|..++..+... +..|.--. +.+
T Consensus 65 ~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~~~e~~-~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~ld 143 (357)
T 3rrk_A 65 WEAVVSQAEQSLTVVGLATVPSSKPFTGSLEEAEAV-LRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHGLD 143 (357)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCSSCCCSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHhcccccccccCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccCC
Q ss_pred CCCCCccccCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHhhCC
Q 036719 89 NIHSPIQTEKRSTSL--KEKLASIAPLVEDLRTKKEERMKQFAD----------------------IKAQIEKISGEISG 144 (601)
Q Consensus 89 ~~~~~~~~~~~~~tL--~eql~~l~~~le~Lrk~K~eR~~ef~~----------------------l~~qi~~L~~eL~~ 144 (601)
.. ....-..+++ .+.+..+...|. ..... ....+.++|..++.
T Consensus 144 -~~--~~~g~~~g~ip~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f 210 (357)
T 3rrk_A 144 -ES--PRLGVIPFLVAKPEELEAVRKALQ----------EALADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGL 210 (357)
T ss_dssp -TC--TTEEEEEEEESCHHHHHHHHHHHH----------HHHTTSCEEEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTC
T ss_pred -cc--ceeeeeeEEecChhhHHHHHHHHH----------HhcCCeEEEEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCC
Q ss_pred CCCCCcccccccCccCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHh
Q 036719 145 YDHLSNSLINSLSLEEED--LSLRRITECQTHLRTLQKEKSDRLNRVLEYVNE----VHSICGVL 203 (601)
Q Consensus 145 ~~~~~~e~l~~~~~~e~d--lS~~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~----I~~L~~~L 203 (601)
..+.++ +... .-.+.+.+++.+++.++++...-.+.+..+... +..++..+
T Consensus 211 ~~~~~p--------~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l 267 (357)
T 3rrk_A 211 AELRFP--------GAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRA 267 (357)
T ss_dssp CBCCCC--------GGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCC--------cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 33
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.34 E-value=2.5e+02 Score=23.26 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccccc-ccCCCccCCCCCCCCCCCHHHHHHHHHH
Q 036719 166 RRITECQTHLRTLQKEKSDRLNRVLEYVNEVHSICGVLG----LDFGQTVS-DVHPSLHGTAMGHSTNISNSTLEGLEHA 240 (601)
Q Consensus 166 ~~L~~l~~~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg----~d~~~~v~-ev~~sl~~~~~~~~~~lS~~~L~~L~~~ 240 (601)
..+..+-..+..|+.+...=..++..+...+..+-.++. +|.+..|. -|.+-|......+....=...++.+...
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~ 85 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVR 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 241 IVKLKAERKIRIQKLKDIVVSLFEL 265 (601)
Q Consensus 241 ~~~L~e~K~~R~~kl~~L~~~l~~L 265 (601)
+..|+.....-..++.++...|..+
T Consensus 86 i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 86 LNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 34
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=23.74 E-value=83 Score=29.14 Aligned_cols=30 Identities=7% Similarity=0.253 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 036719 58 EEAANAKARLHQTVAAKEAELATLMAALGE 87 (601)
Q Consensus 58 ~e~~~~k~~L~q~I~~~~~El~~L~~eLg~ 87 (601)
......+++|.+.+.+++..+.-...++..
T Consensus 78 ~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~ 107 (185)
T 3r2p_A 78 KETEGLRQEMSKDLEEVKAKVQPYLDDFQK 107 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777777666654
No 35
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=23.30 E-value=2.3e+02 Score=23.36 Aligned_cols=66 Identities=17% Similarity=0.041 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 036719 21 LRELQQIWSDIGESEAE---KDRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELN 89 (601)
Q Consensus 21 l~eL~~IWdEIG~~e~e---R~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~ 89 (601)
+..||.--..+|.+-.. -...+..+..|+-++-..... ..++.+..+|.++.--+..|+..+|..+
T Consensus 17 l~~lq~~a~~~gfdw~~~~~~~~~~~kl~EE~gEl~eai~~---~~~~~i~eELgDvLf~lv~lA~~lgiD~ 85 (95)
T 1vmg_A 17 LKELQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEALLS---NNLDSIQEELADVIAWTVSIANLEGIDI 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 56677777888877542 245556666666554443221 2467789999999999999999999865
No 36
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.99 E-value=3.2e+02 Score=22.45 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=12.0
Q ss_pred cHHHHHHHHHHHHHH-HHHHH
Q 036719 102 SLKEKLASIAPLVED-LRTKK 121 (601)
Q Consensus 102 tL~eql~~l~~~le~-Lrk~K 121 (601)
++..++..++..|+. +++..
T Consensus 69 ~~~~klr~Yk~dl~~~lk~~l 89 (97)
T 3onj_A 69 TYKAKLREWKKTIQSDIKRPL 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666 65554
No 37
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.98 E-value=4.4e+02 Score=24.18 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHH
Q 036719 227 TNISNSTLEGLEHAIVKLKAERKIRIQKLKDIVVSLFELWNLMDSPIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQ 306 (601)
Q Consensus 227 ~~lS~~~L~~L~~~~~~L~e~K~~R~~kl~~L~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~ 306 (601)
.+||++--+++++..++.........+++...+.+|..|+.- ..+....|++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a----------------------------~~~DeakI~a 117 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA----------------------------SSPDTAKINA 117 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------------------------SSCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------------CCCCHHHHHH
Confidence 579999999999998888877766666666666666655432 2244667777
Q ss_pred HHHHHHHHHHH
Q 036719 307 ASTEVERLTKL 317 (601)
Q Consensus 307 le~Ev~RLe~l 317 (601)
+..|+..|..-
T Consensus 118 L~~Ei~~Lr~q 128 (175)
T 3lay_A 118 VAKEMESLGQK 128 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 38
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=22.70 E-value=95 Score=31.52 Aligned_cols=41 Identities=27% Similarity=0.470 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 272 PIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELV 326 (601)
Q Consensus 272 p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI 326 (601)
|.+||+.|......+ ...|+.++.+++.|+++|...|.+++
T Consensus 377 pl~eQ~~I~~~l~~l--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 417 (425)
T 1yf2_A 377 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 417 (425)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567899998876532 56889999999999999999988875
No 39
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.66 E-value=1.5e+02 Score=21.88 Aligned_cols=30 Identities=23% Similarity=0.132 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 036719 57 VEEAANAKARLHQTVAAKEAELATLMAALG 86 (601)
Q Consensus 57 V~e~~~~k~~L~q~I~~~~~El~~L~~eLg 86 (601)
|+......+.|.+.++.+.++++.+++.|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445566677788888888888888775
No 40
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.38 E-value=1e+03 Score=28.14 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 036719 171 CQTHLRTLQKEKSDR 185 (601)
Q Consensus 171 l~~~L~~Lq~EK~~R 185 (601)
++..++.+.+|+...
T Consensus 996 l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 996 LRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 41
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=22.31 E-value=76 Score=23.40 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHH-hhhhHHHHHHH
Q 036719 367 LLANIEAQIVKVKDEA-LSRKDIMDRID 393 (601)
Q Consensus 367 lL~~~E~eI~~lke~~-~~~k~Il~~ve 393 (601)
|=..+|.||..+...| ..|+||++.|+
T Consensus 22 Ld~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 22 LDPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 3456889999988766 56899999886
No 42
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.13 E-value=6.7e+02 Score=25.96 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 41 ILMELERECLEVYRRKV--EEAANAKARLHQTVAAKEAELATLMAA 84 (601)
Q Consensus 41 ~l~~le~e~l~v~~~~V--~e~~~~k~~L~q~I~~~~~El~~L~~e 84 (601)
.+..+.+++..++.+.. .++....+.|.+.|.++++-+..+...
T Consensus 374 al~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 374 ALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 44445455555554433 345666677888888888877766543
No 43
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=22.09 E-value=4.7e+02 Score=24.16 Aligned_cols=34 Identities=9% Similarity=0.256 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 036719 109 SIAPLVEDLRTKKEERMKQFADIKAQIEKISGEISGY 145 (601)
Q Consensus 109 ~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~ 145 (601)
.+.+.++.++.+- .+.+.+++.++.-+.++|...
T Consensus 92 ~l~~~~e~lr~~l---~kdlEelr~kL~P~~eEL~~~ 125 (191)
T 1nfn_A 92 RLSKELQAAQARL---GADMEDVCGRLVQYRGEVQAM 125 (191)
T ss_dssp CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHH
Confidence 3555556665555 578888999999998888543
No 44
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.96 E-value=3.4e+02 Score=22.42 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 51 EVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGE-LNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFA 129 (601)
Q Consensus 51 ~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~-~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~ 129 (601)
+-++..+.+....+..+...|..+...+..+-.. |. -|.- +++- ...........+...+..++....+-..++.
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g~~CPvC--gs~l-~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~ 88 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKKA-KGKCPVC--GREL-TDEHREELLSKYHLDLNNSKNTLAKLIDRKS 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SEECTTT--CCEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCC--CCcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666777777777777766666554221 22 1211 1111 1111123344455555555544444444444
Q ss_pred HHHHHHHHHHHhh
Q 036719 130 DIKAQIEKISGEI 142 (601)
Q Consensus 130 ~l~~qi~~L~~eL 142 (601)
.+..++..+-..+
T Consensus 89 ~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 89 ELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 45
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=20.94 E-value=4.7e+02 Score=23.67 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 55 RKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFA 129 (601)
Q Consensus 55 ~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~ 129 (601)
+........++.|...+.++++.+.-...+|....-. .+-+.-..+.|.+++|+++....+.+|.
T Consensus 92 ~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~----------~~EelR~kl~P~~eeL~~~~~~~~eeLr 156 (165)
T 1gs9_A 92 RLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQ----------STEELRVRLASHLRKLRKRLLRDADDLQ 156 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455666777788888888888888877777764332 1223334677888888877765555543
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.81 E-value=7.8e+02 Score=26.21 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 036719 54 RRKVEEAANAKARLHQTVAAKEAELATLMAALGEL 88 (601)
Q Consensus 54 ~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~ 88 (601)
+..|...+...++..+.++..+.++......+...
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~ 496 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLP 496 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcc
Confidence 45555566666666677777777777766666554
No 47
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=20.29 E-value=1.9e+02 Score=24.44 Aligned_cols=35 Identities=31% Similarity=0.290 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 036719 174 HLRTLQKEKSDRLNRVLEYVNEVHSICGVLGLDFG 208 (601)
Q Consensus 174 ~L~~Lq~EK~~R~~kv~~l~~~I~~L~~~Lg~d~~ 208 (601)
.++.++.++-.|..+.......+..|.+.||.-|.
T Consensus 66 vl~~~q~eYi~a~~e~~AQq~~lstLid~LGyvPk 100 (107)
T 2q0o_C 66 VLQTLQDEYVARQKRSEAQQEELSDILDALGFVPD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 67788899999999999999999999999997654
No 48
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.04 E-value=1.5e+02 Score=18.96 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036719 66 RLHQTVAAKEAELATLMA 83 (601)
Q Consensus 66 ~L~q~I~~~~~El~~L~~ 83 (601)
.|.|+|+.+..|++.|--
T Consensus 6 alkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555443
No 49
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=20.03 E-value=1.8e+02 Score=28.20 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 036719 47 RECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELNI 90 (601)
Q Consensus 47 ~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~ 90 (601)
+..+++++..+++--.....=+.+-...+.++..+|..||++|.
T Consensus 13 ~~Ql~~F~~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVDPl 56 (234)
T 3cuq_A 13 SKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPL 56 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHHcCCCcc
Done!