Query 036719
Match_columns 601
No_of_seqs 253 out of 499
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 07:34:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yf2a2 d.287.1.2 (A:221-425) 39.9 18 0.0013 30.4 5.6 41 272-326 157-197 (205)
2 d1gm5a1 a.24.21.1 (A:7-105) Re 33.4 9.7 0.00071 29.8 2.2 48 380-448 45-92 (99)
3 d1ydxa2 d.287.1.2 (A:194-374) 33.0 26 0.0019 29.2 5.4 40 273-326 138-177 (181)
4 d1ydxa1 d.287.1.2 (A:1-193) Bi 32.4 33 0.0024 28.6 6.1 41 273-327 143-183 (193)
5 d1yf2a1 d.287.1.2 (A:1-220) Bi 27.4 49 0.0036 28.3 6.5 42 272-327 167-208 (220)
6 d1gs9a_ a.24.1.1 (A:) Apolipop 24.5 1.6E+02 0.012 23.5 10.2 65 55-129 71-135 (144)
7 d2q37a1 a.288.1.1 (A:6-160) OH 22.5 1.3E+02 0.0097 25.0 8.0 98 386-486 28-135 (155)
8 d1u5ta1 a.4.5.54 (A:20-164) Va 19.3 33 0.0024 28.8 3.1 50 39-89 7-56 (145)
9 d1q06a_ a.6.1.3 (A:) Transcrip 18.4 1.7E+02 0.013 22.7 7.7 60 337-399 53-112 (127)
10 d2o8ia1 a.288.1.1 (A:1-165) Hy 17.5 1.4E+02 0.01 24.8 7.2 60 427-486 81-144 (165)
No 1
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=39.94 E-value=18 Score=30.41 Aligned_cols=41 Identities=27% Similarity=0.470 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 272 PIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELV 326 (601)
Q Consensus 272 p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI 326 (601)
|.+||+.|......+ .+.|+.++..++.|+++|...|..++
T Consensus 157 ~~~eQ~~I~~~l~~i--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 197 (205)
T d1yf2a2 157 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 197 (205)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888776532 67889999999999999999888765
No 2
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=33.40 E-value=9.7 Score=29.82 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=33.1
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHHHHHHHcCCccccccCCCccccchHHHHHHHhhhhhHHHHHHHHHH
Q 036719 380 DEALSRKDIMDRIDRWLYACEEEKWLEEYNQDDNRYNAGRGAHINLKRAERARVTVSKIPAIVDNLINR 448 (601)
Q Consensus 380 e~~~~~k~Il~~vekw~~l~~e~~~LE~~~~D~~R~~~~RG~h~~LlreEK~Rk~i~KlPkl~~~L~~~ 448 (601)
+....+.+|++++.++-+-+. +. .=+.+|++++||++.|.|++.++..
T Consensus 45 DpLlen~el~~kLqeF~~Yi~------~~---------------~~Lp~eR~~kRvk~~~gMIerfR~~ 92 (99)
T d1gm5a1 45 DPLLENKDLEEKLQAFLDYVK------EI---------------PNLPEARKRYRIQKSLEMIEKLRSW 92 (99)
T ss_dssp CGGGGCHHHHHHHHHHHHHHT------TS---------------SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhcCHHHHHHHHHHHHHHH------Hh---------------ccCCHHHHHHHHhccHHHHHHHHHH
Confidence 556667777777777622221 10 1246899999999999999988754
No 3
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=33.03 E-value=26 Score=29.16 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 273 IQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELV 326 (601)
Q Consensus 273 ~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI 326 (601)
.++++.|......+ .+.|+.++.+++.|+++|...|++++
T Consensus 138 l~eQ~~I~~~l~~~--------------d~~i~~~~~~i~~l~~lk~~Ll~~lF 177 (181)
T d1ydxa2 138 FQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLF 177 (181)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888898886643 67899999999999999999888764
No 4
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=32.36 E-value=33 Score=28.62 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 273 IQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELVL 327 (601)
Q Consensus 273 ~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~ 327 (601)
.+||+.+......+ .+.|+.++.+++.|+++|...|++++.
T Consensus 143 ~~eQ~~I~~~l~~l--------------d~~i~~~~~~i~~l~~~~~~ll~~lft 183 (193)
T d1ydxa1 143 KNEQHAIANTLSVF--------------DERLENLASLIEINRKLRDEYAHKLFS 183 (193)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56788888776532 678999999999999999999998863
No 5
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=27.44 E-value=49 Score=28.25 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 272 PIQDKNSFSKITSILRLSESEITEPGVLSTEVIEQASTEVERLTKLKATRMKELVL 327 (601)
Q Consensus 272 p~eEr~~F~~~~~~i~~s~~~~~~~~~LS~~~I~~le~Ev~RLe~lK~~~mk~lI~ 327 (601)
|.++|+.|......+ .+.|+..+..++.|+++|...|.+++.
T Consensus 167 p~~eQ~~I~~~l~~i--------------~~~i~~~~~~i~~L~~~r~~ll~~l~t 208 (220)
T d1yf2a1 167 PLEEQKQIAKILTKI--------------DEGIEIIEKSINKLERIKKGLMHKLLT 208 (220)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567888888876543 678889999999999999999888764
No 6
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=24.52 E-value=1.6e+02 Score=23.54 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036719 55 RKVEEAANAKARLHQTVAAKEAELATLMAALGELNIHSPIQTEKRSTSLKEKLASIAPLVEDLRTKKEERMKQFA 129 (601)
Q Consensus 55 ~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~~~~~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~ 129 (601)
+.-..++..|+++...+.+++..+..-..++....-. .+-+.-..+.|..++|+.+....+.+|.
T Consensus 71 ~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~----------~~ee~r~~l~p~~eel~~~l~~~~eel~ 135 (144)
T d1gs9a_ 71 RLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQ----------STEELRVRLASHLRKLRKRLLRDADDLQ 135 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667778888888888888888888888775432 2233445677888888877766655554
No 7
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.46 E-value=1.3e+02 Score=24.96 Aligned_cols=98 Identities=12% Similarity=0.255 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHcCCccccccCC------CccccchHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHcCC
Q 036719 386 KDIMDRIDRWLYACEEEKWLEEYNQDDNRYNAGR------GAHINLKRAERARVTVSK-IPAIVDNLINRTLAWEEEKKI 458 (601)
Q Consensus 386 k~Il~~vekw~~l~~e~~~LE~~~~D~~R~~~~R------G~h~~LlreEK~Rk~i~K-lPkl~~~L~~~l~~wE~e~g~ 458 (601)
..++..+..+...+.+..|++--.--|. +- +| |..-.....|... -+.. -|...+.|...=.+|++.+|-
T Consensus 28 ~~L~~a~~~~~~~~~~~~~l~~l~aHP~-Lg-~~~~~~~~~~lt~~S~~EQs~-al~~~~~~~~~~l~~lN~~Y~~kFGf 104 (155)
T d2q37a1 28 EAIYTARDIWFNQVNVTDWLEAFSAHPQ-IG-NTPSPSINSDFARRSVSEQST-AFATTSASALQELAEWNVLYKKKFGF 104 (155)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTSCC-TT-SCCC-------------TTHH-HHTSCCHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcCcc-cc-ccccccccchhhHHhHHHHHh-hhccCCHHHHHHHHHHHHHHHHHcCC
Confidence 3444445554455556777777777664 22 22 1111222334333 3666 688999999999999999999
Q ss_pred ceEE--CCccHHHHHHHH-HHHHHhhHHHHH
Q 036719 459 FFLY--DGVRLVSILDDY-KLTRVQREEEKK 486 (601)
Q Consensus 459 ~Fl~--dG~~ll~~lee~-~~~r~eKE~ek~ 486 (601)
||+| .|..--++|... ..+....+.|..
T Consensus 105 pFIi~v~g~s~~eIL~~l~~Rl~n~~~~E~~ 135 (155)
T d2q37a1 105 IFIICASGRTHAEMLHALKERYENRPIVELE 135 (155)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHTTSCHHHHHH
T ss_pred eeEEeeCCCCHHHHHHHHHHHHCCCHHHHHH
Confidence 9987 888888888655 445555565544
No 8
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.26 E-value=33 Score=28.79 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 036719 39 DRILMELERECLEVYRRKVEEAANAKARLHQTVAAKEAELATLMAALGELN 89 (601)
Q Consensus 39 ~~~l~~le~e~l~v~~~~V~e~~~~k~~L~q~I~~~~~El~~L~~eLg~~~ 89 (601)
++.+.++ +.-+++++..+.+--..-..=+..-...++++..||+.+|++|
T Consensus 7 e~q~~ql-~~QL~vF~~~L~~FA~kH~~eI~~np~FR~~F~~MC~~iGVDP 56 (145)
T d1u5ta1 7 EKQSVEL-RDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDP 56 (145)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHhCCCh
No 9
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=18.39 E-value=1.7e+02 Score=22.73 Aligned_cols=60 Identities=5% Similarity=0.137 Sum_probs=37.9
Q ss_pred HHHcCCCccchHHHhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 036719 337 CKMTHIEPDTSTAAEKSNAMIDSGLVDPSELLANIEAQIVKVKDEALSRKDIMDRIDRWLYAC 399 (601)
Q Consensus 337 Wd~~~~~~e~~~~~~~~~~~~~s~~~~~eelL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~ 399 (601)
+..++|+.++ ...++.....+.....+.....+..+..+++..+..+...+.+..+...|
T Consensus 53 lr~~G~sl~e---I~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~l~~~~ 112 (127)
T d1q06a_ 53 ARQVGFNLEE---SGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANAC 112 (127)
T ss_dssp HHHTTCCHHH---HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHH---HHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5667887654 33455555555456677777777777777776666666666666654444
No 10
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=17.51 E-value=1.4e+02 Score=24.83 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=40.5
Q ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHcCCceEE--CCccHHHHHHHH-HHHHHhhHHHHH
Q 036719 427 RAERARVTVSK-IPAIVDNLINRTLAWEEEKKIFFLY--DGVRLVSILDDY-KLTRVQREEEKK 486 (601)
Q Consensus 427 reEK~Rk~i~K-lPkl~~~L~~~l~~wE~e~g~~Fl~--dG~~ll~~lee~-~~~r~eKE~ek~ 486 (601)
..|....-+.. -+...+.|...=.+|++.+|-||.+ .|..--++|... ..+....+.|..
T Consensus 81 ~~Eq~~agl~~~~~~e~~~l~~lN~~Y~~kFGfpFIi~v~g~~~~~Il~~l~~Rl~n~~~~E~~ 144 (165)
T d2o8ia1 81 RNEQAGAGLDRLSPQEHARFTQLNSAYTEKFGFPFIIAVKGLNRHDILSAFDTRIDNNAAQEFA 144 (165)
T ss_dssp -------CTTSCCHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCHHHHHHHHHHHHTSCHHHHHH
T ss_pred hhhhhhccccccCHHHHHHHHHHHHHHHHHcCCeeEEeeCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555666 4777788999999999999999987 899888888654 445555565544
Done!