BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036720
         (291 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O7I|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
           Binding Protein Bound With Cellobiose
 pdb|3I5O|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
           Binding Protein Bound With Cellopentaose
 pdb|3I5O|B Chain B, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
           Binding Protein Bound With Cellopentaose
          Length = 592

 Score = 28.1 bits (61), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 30/84 (35%)

Query: 193 YAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPWEVRVNAKPTKKIKGKQVSN 252
           YA    W  +   YL    Y + +D W     ER+       +R+  +P  +        
Sbjct: 27  YAPQSTWGTDQFMYLPAFQYDLGRDAWIPVIAERYEFVDDKTLRIYIRPEARWSDGVPIT 86

Query: 253 ADKFANQLELKVSVSATPNGNKTT 276
           AD F   LEL   +   P G   T
Sbjct: 87  ADDFVYALELTKELGIGPGGGWDT 110


>pdb|1MJT|A Chain A, Crystal Structure Of Sanos, A Bacterial Nitric Oxide
           Synthase Oxygenase Protein, In Complex With Nad+ And
           Seitu
 pdb|1MJT|B Chain B, Crystal Structure Of Sanos, A Bacterial Nitric Oxide
           Synthase Oxygenase Protein, In Complex With Nad+ And
           Seitu
          Length = 347

 Score = 27.7 bits (60), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 105 HSVQKQTSSAINNIHSWCNIQTQIRNRRL 133
           H + K+  + I N++  C+ +TQI N+RL
Sbjct: 1   HHLFKEAQAFIENMYKECHYETQIINKRL 29


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.128    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,395,066
Number of Sequences: 62578
Number of extensions: 253770
Number of successful extensions: 599
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 4
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)