BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036720
(291 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
Length = 454
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 7/176 (3%)
Query: 63 FLRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWC 122
F S EE AA IQ FR + AR+ + +RG R +L++ VQ+Q + + + +
Sbjct: 101 FAGKSKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLS 160
Query: 123 NIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAK-LHDLE--VEWHNGSETMEEILSRIQQ 179
+Q+QIR+RR+ M E + +HK+L L+ AK L L+ W+ +++ E++ + +
Sbjct: 161 RVQSQIRSRRIRMSEENQARHKQL---LQKHAKELGGLKNGGNWNYSNQSKEQVEAGMLH 217
Query: 180 REEAAIKRERAMAYAFSHQWRANS-SQYLGQAYYSICKDNWGWSWMERWIAARPWE 234
+ EA ++RERA+AYAF+HQ S S+ + WGWSW+ERW+A RPWE
Sbjct: 218 KYEATMRRERALAYAFTHQQNLKSFSKTANPMFMDPSNPTWGWSWLERWMAGRPWE 273
>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
Length = 668
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 28/171 (16%)
Query: 66 ISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQ 125
+ V+ +AT+IQ AFR Y ARKS R L+G R +++ +SV++QT +A+ + +Q
Sbjct: 318 LPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQ 377
Query: 126 TQIRNRRLCMVTEGRIKHKKLENQLKL---EAKLHDLEV---EWHNGSETMEEILSRIQQ 179
+QI++RR+ M LENQ ++ EAK E W + T EE SR Q+
Sbjct: 378 SQIQSRRIKM----------LENQAQVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQR 427
Query: 180 REEAAIKRERAMAYAFSHQWRANSSQYLGQAYYSICKDNWG----WSWMER 226
+ +A IKRER+MAYA+S + NS + +DN W+W++R
Sbjct: 428 KTDAIIKRERSMAYAYSRKLWKNSPKS--------TQDNRSFPQWWNWVDR 470
>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
Length = 587
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 21/164 (12%)
Query: 70 ERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIR 129
E AAT +Q AFR Y AR++ L+G R LI+ H V++Q + + ++ +Q R
Sbjct: 113 EIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFAR 172
Query: 130 NRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQREEAAIKRER 189
R + G ++K QL KL + +A + ++
Sbjct: 173 GREIRKSDIGVQVYRKCRLQLLQGNKLAN---------------------PTDAYLGIKK 211
Query: 190 AMAYAFSHQWRANSSQYLGQAYYSICKDNWGWSWMERWIAARPW 233
A AF+ + A+S + L Y N W+E W A+ W
Sbjct: 212 LTANAFAQKLLASSPKVLPVHAYDTSNPNSNLIWLENWSASCFW 255
>sp|Q1GGR8|MIAA_RUEST tRNA dimethylallyltransferase OS=Ruegeria sp. (strain TM1040)
GN=miaA PE=3 SV=1
Length = 288
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 24/154 (15%)
Query: 3 SGHWFRSIICLKKGKQDRSKQGKV----QSATEKSNDSNESPSESSGNANANTNGGSDPH 58
+GHW R + L KG + G + TE D +P E A+ +
Sbjct: 81 AGHWLRDVTPLLKGTKRPIIVGGTGLYFLTLTEGMADIPATPPEVRAEADTLSLETLAAD 140
Query: 59 INPGF-LRISVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHS------VQKQT 111
++P RI ++ RA R+Q+A+ LR TGR QD + + T
Sbjct: 141 LDPETRARIDMQNRA--RVQRAWEV---------LRATGRPLAEWQDDTPPPLLPAKDCT 189
Query: 112 SSAINNIHSWCNIQTQIRNRRLCMVTEGRIKHKK 145
+ + W ++T+IR R M+ +G ++ +
Sbjct: 190 ALVVEAERDW--LETRIRRRFSMMIAQGALEEAR 221
>sp|Q97AP1|CDC6_THEVO Cell division control protein 6 homolog OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=cdc6 PE=3 SV=2
Length = 404
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 86 RKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCM--VTEGRIKH 143
R+++ R+ GTG+F +++ D + S ++++ + T + N ++ M +T
Sbjct: 125 REAVDRINGTGKFFVIVLDEMDRLIKKSGGDSLYVLLKLMTDVENVKVSMIGITNDTTLL 184
Query: 144 KKLENQLKLEAKLHDLEVEWHNGSETMEEILSRIQQ 179
+ L++++K + +N +E + I SR+++
Sbjct: 185 ENLDSRIKSRLNQESIVFPPYNATEIRDIIASRLEK 220
>sp|A6NHR9|SMHD1_HUMAN Structural maintenance of chromosomes flexible hinge
domain-containing protein 1 OS=Homo sapiens GN=SMCHD1
PE=1 SV=2
Length = 2005
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 108 QKQTSSAINNIHSWCNIQTQIRNRRLCMVTEGRIKHKKLENQLKLEAKLHDLEVEWHNGS 167
+ Q S +I S Q+ N C V E R+K +L N+L K+H++++
Sbjct: 1630 KDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNEL----KIHNIDIPTTQQV 1685
Query: 168 ETMEEILSRIQQREEAAIKRER 189
+E +L R +E K+ R
Sbjct: 1686 PHIEALLKRKLSEQEELKKKPR 1707
>sp|P75310|Y474_MYCPN Uncharacterized protein MG328 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_474 PE=4 SV=1
Length = 1033
Score = 32.3 bits (72), Expect = 4.4, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 109 KQTSSAINNIHSWCN-IQTQIRNRRLCMVTEGRIKHKKLENQLKL-----EAKLHDLEVE 162
KQT+ ++ I N ++T+I+ R + + K++ L Q +L +AKL +LE E
Sbjct: 509 KQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYRNLLKQYELMRADSDAKLKELEHE 568
Query: 163 WHNGSETMEEILSRIQQREEAAIK 186
H + +E L+++Q+ EA +K
Sbjct: 569 QHLAHQHHQEQLAQLQRHNEALVK 592
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,658,832
Number of Sequences: 539616
Number of extensions: 3916148
Number of successful extensions: 15333
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 15175
Number of HSP's gapped (non-prelim): 160
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)