Query 036720
Match_columns 291
No_of_seqs 250 out of 654
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 98.1 3.8E-06 8.3E-11 49.8 3.3 21 70-90 1-21 (21)
2 KOG0160 Myosin class V heavy c 97.7 0.00011 2.3E-09 78.7 7.9 68 67-138 670-738 (862)
3 smart00015 IQ Short calmodulin 97.6 5.8E-05 1.2E-09 46.8 3.1 22 69-90 2-23 (26)
4 KOG0520 Uncharacterized conser 97.1 0.00061 1.3E-08 73.6 4.8 74 68-141 808-889 (975)
5 KOG0160 Myosin class V heavy c 96.6 0.0067 1.5E-07 65.3 8.0 66 67-135 693-758 (862)
6 PTZ00014 myosin-A; Provisional 96.5 0.0032 6.8E-08 67.7 4.9 41 71-111 778-819 (821)
7 PF00612 IQ: IQ calmodulin-bin 94.9 0.025 5.4E-07 33.3 2.3 19 93-111 2-20 (21)
8 KOG2128 Ras GTPase-activating 94.6 0.077 1.7E-06 59.5 7.0 72 68-139 563-643 (1401)
9 KOG0164 Myosin class I heavy c 94.4 0.092 2E-06 55.9 6.6 57 70-137 696-753 (1001)
10 COG5022 Myosin heavy chain [Cy 93.8 0.11 2.3E-06 58.7 6.0 66 68-134 743-809 (1463)
11 smart00015 IQ Short calmodulin 91.9 0.14 3E-06 31.5 2.1 19 93-111 4-22 (26)
12 KOG0520 Uncharacterized conser 89.3 0.35 7.6E-06 53.0 3.7 64 71-134 834-930 (975)
13 PTZ00014 myosin-A; Provisional 88.1 0.69 1.5E-05 50.2 4.9 39 94-135 779-817 (821)
14 KOG4427 E3 ubiquitin protein l 82.7 1.2 2.6E-05 48.1 3.5 24 67-90 27-50 (1096)
15 KOG0377 Protein serine/threoni 80.8 1.9 4.1E-05 44.2 4.0 34 68-101 15-48 (631)
16 KOG2128 Ras GTPase-activating 80.3 2.4 5.2E-05 48.2 4.9 61 75-138 540-612 (1401)
17 KOG0942 E3 ubiquitin protein l 79.5 1.4 3E-05 48.2 2.8 27 66-92 25-51 (1001)
18 KOG0161 Myosin class II heavy 72.7 13 0.00027 44.3 8.1 43 95-137 776-818 (1930)
19 KOG0162 Myosin class I heavy c 67.0 4.6 9.9E-05 43.8 2.9 23 71-93 697-719 (1106)
20 KOG0163 Myosin class VI heavy 64.3 15 0.00032 40.3 6.0 34 67-100 810-844 (1259)
21 KOG0161 Myosin class II heavy 62.9 8.1 0.00017 45.8 4.1 42 69-110 772-817 (1930)
22 COG5022 Myosin heavy chain [Cy 60.6 58 0.0013 37.8 10.0 34 80-113 778-814 (1463)
23 PF08763 Ca_chan_IQ: Voltage g 56.8 14 0.00029 25.1 2.7 21 69-89 8-28 (35)
24 PF15157 IQ-like: IQ-like 40.1 26 0.00057 28.5 2.5 21 70-90 47-67 (97)
25 KOG0165 Microtubule-associated 25.2 1.7E+02 0.0037 32.4 6.3 24 67-90 940-963 (1023)
26 KOG1419 Voltage-gated K+ chann 24.1 42 0.00091 35.5 1.5 20 68-87 338-357 (654)
27 KOG4427 E3 ubiquitin protein l 23.9 1E+02 0.0022 34.1 4.3 24 93-116 31-54 (1096)
28 KOG0942 E3 ubiquitin protein l 21.5 1.2E+02 0.0026 33.9 4.4 26 91-116 28-53 (1001)
29 KOG0163 Myosin class VI heavy 21.3 95 0.0021 34.4 3.5 19 94-112 815-833 (1259)
30 PF09692 Arb1: Argonaute siRNA 20.8 1.9E+02 0.0041 29.2 5.4 19 75-93 48-66 (396)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=98.09 E-value=3.8e-06 Score=49.83 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhh
Q 036720 70 ERAATRIQKAFRAYRARKSIR 90 (291)
Q Consensus 70 e~AAi~IQsafRGylARr~lr 90 (291)
..|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999885
No 2
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.68 E-value=0.00011 Score=78.75 Aligned_cols=68 Identities=21% Similarity=0.135 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 036720 67 SVEERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTE 138 (291)
Q Consensus 67 ~~ee~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e 138 (291)
.....+++.||..||||+.|+.|..++ +++.+|+++||+++|+. .+ ...+++.||..+|++..|+.|.
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~~y~ 738 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRRRYR 738 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHHHHH
Confidence 344567888999999999999999765 88999999999999982 22 4556677777777766666553
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.63 E-value=5.8e-05 Score=46.83 Aligned_cols=22 Identities=50% Similarity=0.588 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHhh
Q 036720 69 EERAATRIQKAFRAYRARKSIR 90 (291)
Q Consensus 69 ee~AAi~IQsafRGylARr~lr 90 (291)
.+.||+.||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4689999999999999999984
No 4
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.05 E-value=0.00061 Score=73.58 Aligned_cols=74 Identities=24% Similarity=0.281 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhhhhhh
Q 036720 68 VEERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQTSSAIN-------NIHSWCNIQTQIRNRRLCMVTEG 139 (291)
Q Consensus 68 ~ee~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~~~tl~-------~~~a~vkIQa~vR~rr~R~~~e~ 139 (291)
....||..||.-||||+.|+.|..++ -+|+||+.+||+.+|++|..... -+.+|-++|+-+|++..+...|.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 34568999999999999999999665 79999999999999999963222 33468889999999998888776
Q ss_pred hh
Q 036720 140 RI 141 (291)
Q Consensus 140 ~~ 141 (291)
..
T Consensus 888 ~~ 889 (975)
T KOG0520|consen 888 QE 889 (975)
T ss_pred cc
Confidence 54
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.57 E-value=0.0067 Score=65.32 Aligned_cols=66 Identities=17% Similarity=0.010 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhhhhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036720 67 SVEERAATRIQKAFRAYRARKSIRRLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCM 135 (291)
Q Consensus 67 ~~ee~AAi~IQsafRGylARr~lr~LkgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~ 135 (291)
+....+++.||+.+||+++|+..-.-...+.+|..+|++..|++|.. ...+++.||+.+|+..+|.
T Consensus 693 ~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~---~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 693 LQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRA---LIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcc
Confidence 46678999999999999999833333578999999999999999954 4789999999999999987
No 6
>PTZ00014 myosin-A; Provisional
Probab=96.47 E-value=0.0032 Score=67.70 Aligned_cols=41 Identities=10% Similarity=0.211 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhHHHHHHhhhh-hhhhHHHhhhhhHHHHHHH
Q 036720 71 RAATRIQKAFRAYRARKSIRRL-RGTGRFNILIQDHSVQKQT 111 (291)
Q Consensus 71 ~AAi~IQsafRGylARr~lr~L-kgivrLQalvRG~lvRrQ~ 111 (291)
..|+.||++||||++|+.|..+ .++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3688999999999999999964 5899999999999998753
No 7
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=94.90 E-value=0.025 Score=33.34 Aligned_cols=19 Identities=5% Similarity=-0.055 Sum_probs=15.4
Q ss_pred hhhhHHHhhhhhHHHHHHH
Q 036720 93 RGTGRFNILIQDHSVQKQT 111 (291)
Q Consensus 93 kgivrLQalvRG~lvRrQ~ 111 (291)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4678888888888888876
No 8
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.63 E-value=0.077 Score=59.51 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhHHH---HHHhh--hhhhhhHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhh
Q 036720 68 VEERAATRIQKAFRAYRA---RKSIR--RLRGTGRFNILIQDHSVQKQTSSAIN----NIHSWCNIQTQIRNRRLCMVTE 138 (291)
Q Consensus 68 ~ee~AAi~IQsafRGylA---Rr~lr--~LkgivrLQalvRG~lvRrQ~~~tl~----~~~a~vkIQa~vR~rr~R~~~e 138 (291)
......+.||+++|||+. +..|. ..+.+|.+|++.||+++|+.+...+. |+.+.+.||+.+|++..|..+.
T Consensus 563 ~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~ 642 (1401)
T KOG2128|consen 563 KQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYK 642 (1401)
T ss_pred hcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHH
Confidence 356789999999999994 22222 44689999999999999999874444 7779999999999999888765
Q ss_pred h
Q 036720 139 G 139 (291)
Q Consensus 139 ~ 139 (291)
.
T Consensus 643 ~ 643 (1401)
T KOG2128|consen 643 L 643 (1401)
T ss_pred H
Confidence 4
No 9
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=94.40 E-value=0.092 Score=55.90 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhhhh-hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 036720 70 ERAATRIQKAFRAYRARKSIRRLRGT-GRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVT 137 (291)
Q Consensus 70 e~AAi~IQsafRGylARr~lr~Lkgi-vrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~ 137 (291)
-.-|+.||.+|||+++|..|+.++.+ +.++ ..|.+-++- .+-.||.++|+.+.++-+
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks----------~v~el~~~~rg~k~~r~y 753 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKS----------YVQELQRRFRGAKQMRDY 753 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHhhhhcccc
Confidence 35689999999999999999998854 4444 566444432 334578888887766544
No 10
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=93.79 E-value=0.11 Score=58.71 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhh-hhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 036720 68 VEERAATRIQKAFRAYRARKSIR-RLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLC 134 (291)
Q Consensus 68 ~ee~AAi~IQsafRGylARr~lr-~LkgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R 134 (291)
.-...|++||++|||++.|++|. +++.+..+|.+.+|..+|+.+...+ -.....++|..++...-|
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~r 809 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGSR 809 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhhH
Confidence 44678999999999999999988 6667777777777777775543221 133455555555554433
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=91.92 E-value=0.14 Score=31.52 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=15.8
Q ss_pred hhhhHHHhhhhhHHHHHHH
Q 036720 93 RGTGRFNILIQDHSVQKQT 111 (291)
Q Consensus 93 kgivrLQalvRG~lvRrQ~ 111 (291)
+.++.||+.+||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4678889999999988887
No 12
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=89.26 E-value=0.35 Score=52.99 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhh---hh--------hHHHhhhhhHHHHHHHH----------------------HHHHH
Q 036720 71 RAATRIQKAFRAYRARKSIRRLR---GT--------GRFNILIQDHSVQKQTS----------------------SAINN 117 (291)
Q Consensus 71 ~AAi~IQsafRGylARr~lr~Lk---gi--------vrLQalvRG~lvRrQ~~----------------------~tl~~ 117 (291)
.-+|+||+++|||-.|+.|+.+- ++ -++|.-+||+..|+-+. ...+-
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~ 913 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL 913 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999552 21 23578888877654331 11222
Q ss_pred HHHHHHHHHHHHhhhhh
Q 036720 118 IHSWCNIQTQIRNRRLC 134 (291)
Q Consensus 118 ~~a~vkIQa~vR~rr~R 134 (291)
-+++++||+.+|...++
T Consensus 914 ~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 914 TRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 35899999999988776
No 13
>PTZ00014 myosin-A; Provisional
Probab=88.07 E-value=0.69 Score=50.17 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=33.2
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036720 94 GTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCM 135 (291)
Q Consensus 94 givrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~ 135 (291)
-++.||+.+||++.|+.+.. ..++++.||+.+|++..++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~---~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRK---NIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 46688999999999999944 4779999999999987764
No 14
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.71 E-value=1.2 Score=48.13 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhh
Q 036720 67 SVEERAATRIQKAFRAYRARKSIR 90 (291)
Q Consensus 67 ~~ee~AAi~IQsafRGylARr~lr 90 (291)
.+.+.||+.||..+|||++|+.|+
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366889999999999999999987
No 15
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=80.80 E-value=1.9 Score=44.18 Aligned_cols=34 Identities=38% Similarity=0.345 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhhhhhHHHhh
Q 036720 68 VEERAATRIQKAFRAYRARKSIRRLRGTGRFNIL 101 (291)
Q Consensus 68 ~ee~AAi~IQsafRGylARr~lr~LkgivrLQal 101 (291)
+--.||+.||..||+|.||...+..-...-+|++
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 4578999999999999999987765555666655
No 16
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=80.27 E-value=2.4 Score=48.16 Aligned_cols=61 Identities=15% Similarity=0.029 Sum_probs=46.7
Q ss_pred HHHHHHhhHHHHHHhhhh--------hhhhHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhh
Q 036720 75 RIQKAFRAYRARKSIRRL--------RGTGRFNILIQDHSVQKQTSSAIN----NIHSWCNIQTQIRNRRLCMVTE 138 (291)
Q Consensus 75 ~IQsafRGylARr~lr~L--------kgivrLQalvRG~lvRrQ~~~tl~----~~~a~vkIQa~vR~rr~R~~~e 138 (291)
+||+-.|||..|-.++.. ..++-+|+++||+++ +..... ...-++.+|+..|+..+|..+-
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~ 612 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYS 612 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHH
Confidence 459999999999998844 357889999999997 332222 2346999999999999887663
No 17
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.50 E-value=1.4 Score=48.18 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHhhhh
Q 036720 66 ISVEERAATRIQKAFRAYRARKSIRRL 92 (291)
Q Consensus 66 ~~~ee~AAi~IQsafRGylARr~lr~L 92 (291)
..++|.+||+||+.||||++|+..+.+
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 346678999999999999999987644
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.73 E-value=13 Score=44.28 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=35.9
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 036720 95 TGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVT 137 (291)
Q Consensus 95 ivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~ 137 (291)
++.|||.|||+++|+.+......+.++..||.-+|.+...+.+
T Consensus 776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5677999999999999988888888999999999988655544
No 19
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=66.97 E-value=4.6 Score=43.78 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhh
Q 036720 71 RAATRIQKAFRAYRARKSIRRLR 93 (291)
Q Consensus 71 ~AAi~IQsafRGylARr~lr~Lk 93 (291)
--|.+||.|||.|++||.|-.++
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999886
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=64.32 E-value=15 Score=40.27 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhh-hhhhhhHHHh
Q 036720 67 SVEERAATRIQKAFRAYRARKSIR-RLRGTGRFNI 100 (291)
Q Consensus 67 ~~ee~AAi~IQsafRGylARr~lr-~LkgivrLQa 100 (291)
.-...+.+++|+..||||+|++++ .+.|+.++-+
T Consensus 810 ~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~ 844 (1259)
T KOG0163|consen 810 IYRAECVLKAQRIARGYLARKRHRPRIAGIRKINA 844 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 345668899999999999999998 5556555533
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=62.87 E-value=8.1 Score=45.80 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhh----hhhhHHHhhhhhHHHHHH
Q 036720 69 EERAATRIQKAFRAYRARKSIRRL----RGTGRFNILIQDHSVQKQ 110 (291)
Q Consensus 69 ee~AAi~IQsafRGylARr~lr~L----kgivrLQalvRG~lvRrQ 110 (291)
...-.+.+|+++|||++|+.|... .++..||.=+|-+...+.
T Consensus 772 ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 772 LSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345678899999999999999833 578888988877754443
No 22
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=60.61 E-value=58 Score=37.84 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=17.8
Q ss_pred HhhHHHHHHhh---hhhhhhHHHhhhhhHHHHHHHHH
Q 036720 80 FRAYRARKSIR---RLRGTGRFNILIQDHSVQKQTSS 113 (291)
Q Consensus 80 fRGylARr~lr---~LkgivrLQalvRG~lvRrQ~~~ 113 (291)
-+|++.|+.+. -.+..++||.+.+...-|..+..
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~ 814 (1463)
T COG5022 778 QHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRS 814 (1463)
T ss_pred hcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHH
Confidence 34454444433 22455666666666666666543
No 23
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=56.77 E-value=14 Score=25.12 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHh
Q 036720 69 EERAATRIQKAFRAYRARKSI 89 (291)
Q Consensus 69 ee~AAi~IQsafRGylARr~l 89 (291)
.--||..||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999998863
No 24
>PF15157 IQ-like: IQ-like
Probab=40.13 E-value=26 Score=28.45 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhh
Q 036720 70 ERAATRIQKAFRAYRARKSIR 90 (291)
Q Consensus 70 e~AAi~IQsafRGylARr~lr 90 (291)
|.-+..||.+||-|++|....
T Consensus 47 eskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 47 ESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hHHHHHHHHHHHHHHHhcCCc
Confidence 455778999999999998744
No 25
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=25.23 E-value=1.7e+02 Score=32.39 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhh
Q 036720 67 SVEERAATRIQKAFRAYRARKSIR 90 (291)
Q Consensus 67 ~~ee~AAi~IQsafRGylARr~lr 90 (291)
+....||+.||.+.|||.+|+.|+
T Consensus 940 enkKkaavviqkmirgfiarrkfq 963 (1023)
T KOG0165|consen 940 ENKKKAAVVIQKMIRGFIARRKFQ 963 (1023)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344679999999999999999987
No 26
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=24.08 E-value=42 Score=35.53 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 036720 68 VEERAATRIQKAFRAYRARK 87 (291)
Q Consensus 68 ~ee~AAi~IQsafRGylARr 87 (291)
+...||..||.+||-|.|=.
T Consensus 338 rr~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYAAEN 357 (654)
T ss_pred hcchHHHHHHHHHHHHhccc
Confidence 44679999999999999844
No 27
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.88 E-value=1e+02 Score=34.11 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=19.9
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHH
Q 036720 93 RGTGRFNILIQDHSVQKQTSSAIN 116 (291)
Q Consensus 93 kgivrLQalvRG~lvRrQ~~~tl~ 116 (291)
...+.||+++|||++|+.+...++
T Consensus 31 ~aa~~iq~~lrsyl~Rkk~~~~I~ 54 (1096)
T KOG4427|consen 31 AAALFIQRVLRSYLVRKKAQIEIQ 54 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999875443
No 28
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.53 E-value=1.2e+02 Score=33.91 Aligned_cols=26 Identities=4% Similarity=0.087 Sum_probs=21.5
Q ss_pred hhhhhhHHHhhhhhHHHHHHHHHHHH
Q 036720 91 RLRGTGRFNILIQDHSVQKQTSSAIN 116 (291)
Q Consensus 91 ~LkgivrLQalvRG~lvRrQ~~~tl~ 116 (291)
+.++.|.+|+++||+.+|++.....+
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHH
Confidence 55799999999999999998754433
No 29
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=21.33 E-value=95 Score=34.42 Aligned_cols=19 Identities=5% Similarity=-0.043 Sum_probs=16.8
Q ss_pred hhhHHHhhhhhHHHHHHHH
Q 036720 94 GTGRFNILIQDHSVQKQTS 112 (291)
Q Consensus 94 givrLQalvRG~lvRrQ~~ 112 (291)
.++++|+.+||+++|+++.
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~ 833 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHR 833 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 4788899999999999974
No 30
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=20.84 E-value=1.9e+02 Score=29.20 Aligned_cols=19 Identities=37% Similarity=0.707 Sum_probs=16.3
Q ss_pred HHHHHHhhHHHHHHhhhhh
Q 036720 75 RIQKAFRAYRARKSIRRLR 93 (291)
Q Consensus 75 ~IQsafRGylARr~lr~Lk 93 (291)
+||.+.-.|++||++...+
T Consensus 48 RiE~~IQRyr~rRRl~~~R 66 (396)
T PF09692_consen 48 RIEECIQRYRARRRLDSER 66 (396)
T ss_pred HHHHHHHHHHHhcCCChHH
Confidence 9999999999999977443
Done!