Query 036720
Match_columns 291
No_of_seqs 250 out of 654
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.1 1.6E-10 5.6E-15 83.0 6.9 53 68-121 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.9 3.4E-09 1.2E-13 73.1 5.6 41 71-111 4-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.8 1.1E-08 3.7E-13 109.8 9.0 71 67-138 813-884 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.8 1.5E-08 5.1E-13 108.7 9.3 69 70-139 768-837 (1080)
5 1n2d_C IQ2 and IQ3 motifs from 98.1 3.7E-06 1.3E-10 57.7 5.6 44 93-137 4-47 (48)
6 2l53_B CAM, voltage-gated sodi 98.0 3.6E-06 1.2E-10 54.2 3.2 24 67-90 3-26 (31)
7 2kxw_B Sodium channel protein 97.9 3.9E-06 1.3E-10 52.5 2.1 22 67-88 3-24 (27)
8 2ix7_C Myosin-5A; contractIle 97.7 8.3E-05 2.8E-09 52.9 6.1 44 93-139 6-49 (58)
9 1wdc_A Scallop myosin; calcium 97.3 0.00036 1.2E-08 50.7 5.7 39 71-109 7-49 (64)
10 2bl0_A Major plasmodial myosin 97.3 0.00026 8.8E-09 51.4 4.2 42 95-136 7-48 (63)
11 2bl0_A Major plasmodial myosin 97.2 0.00054 1.9E-08 49.7 5.6 42 70-111 4-49 (63)
12 1wdc_A Scallop myosin; calcium 97.2 0.00061 2.1E-08 49.4 5.7 46 93-138 7-52 (64)
13 1kk8_A Myosin heavy chain, str 96.9 0.00083 2.9E-08 70.6 5.9 41 71-111 780-824 (837)
14 3gn4_A Myosin-VI; unconvention 96.4 0.0028 9.6E-08 54.0 4.5 35 68-102 43-78 (148)
15 1i84_S Smooth muscle myosin he 95.8 0.0062 2.1E-07 65.8 4.9 41 71-111 793-837 (1184)
16 1kk8_A Myosin heavy chain, str 94.7 0.047 1.6E-06 57.5 7.1 45 94-138 781-825 (837)
17 4dck_A Sodium channel protein 93.1 0.066 2.2E-06 46.4 3.8 29 63-91 123-151 (168)
18 1i84_S Smooth muscle myosin he 92.9 0.16 5.3E-06 55.0 7.1 45 93-137 793-837 (1184)
19 1w7j_A Myosin VA; motor protei 90.2 0.18 6.2E-06 52.8 4.0 25 70-94 768-792 (795)
20 4anj_A Unconventional myosin-V 85.8 1.1 3.6E-05 48.5 6.5 41 70-111 775-816 (1052)
21 3gn4_A Myosin-VI; unconvention 76.2 3.9 0.00013 34.6 5.3 33 93-125 46-78 (148)
22 4anj_A Unconventional myosin-V 59.1 15 0.0005 39.8 6.7 44 91-137 773-816 (1052)
23 3dvk_B Voltage-dependent R-typ 44.2 9.6 0.00033 22.7 1.3 17 70-86 6-22 (23)
24 3bxl_B CAM, voltage-dependent 40.2 20 0.0007 21.9 2.4 18 71-88 3-20 (26)
25 2ycu_A Non muscle myosin 2C, a 39.9 28 0.00094 37.3 5.0 16 120-135 789-804 (995)
26 2f3y_B Voltage-dependent L-typ 36.6 23 0.00078 21.6 2.2 18 72-89 4-21 (26)
27 2be6_D Voltage-dependent L-typ 33.5 33 0.0011 22.5 2.7 20 70-89 11-30 (37)
28 1w7j_A Myosin VA; motor protei 27.4 46 0.0016 34.8 4.1 18 120-137 770-787 (795)
29 3dve_B Voltage-dependent N-typ 21.8 11 0.00039 22.4 -1.0 17 70-86 5-21 (23)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.10 E-value=1.6e-10 Score=82.95 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 036720 68 VEERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQTSSAINNIHSW 121 (291)
Q Consensus 68 ~ee~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~~~tl~~~~a~ 121 (291)
..+.|||.||+.||||++|+.|..++ +++.||+.+||+++|+.+.. ++...++
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCc
Confidence 45789999999999999999999886 89999999999999999954 4444443
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.85 E-value=3.4e-09 Score=73.14 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhh---hhhHHHhhhhhHHHHHHH
Q 036720 71 RAATRIQKAFRAYRARKSIRRLR---GTGRFNILIQDHSVQKQT 111 (291)
Q Consensus 71 ~AAi~IQsafRGylARr~lr~Lk---givrLQalvRG~lvRrQ~ 111 (291)
.|||.||+.||||++|+.|..++ +++.||+.+||+++|+.+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 58999999999999999998664 788999999999999875
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.77 E-value=1.1e-08 Score=109.81 Aligned_cols=71 Identities=25% Similarity=0.201 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 036720 67 SVEERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTE 138 (291)
Q Consensus 67 ~~ee~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e 138 (291)
+++..||+.||++||||++|+.|..++ +++.||+.+||+++|+++.. ++...+++.||+.+|++.+|+.+.
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~~y~ 884 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARVHYH 884 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHHHTT
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888664 77888888888888887743 444557777777777777776653
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.75 E-value=1.5e-08 Score=108.75 Aligned_cols=69 Identities=20% Similarity=0.186 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 036720 70 ERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEG 139 (291)
Q Consensus 70 e~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e~ 139 (291)
..||+.||++||||++|+.|..++ +++.||+.+||+++|+.+. .++...+++.||+.+|++.+|+.+..
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~y~~ 837 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKRYQC 837 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHHHHH
Confidence 579999999999999999999775 8999999999999999985 46778899999999999999987753
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.14 E-value=3.7e-06 Score=57.68 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=38.0
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 036720 93 RGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVT 137 (291)
Q Consensus 93 kgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~ 137 (291)
..++.||+.+||+++|+++.. ++...+++.||+.+||+.+|..+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHhh
Confidence 478999999999999999954 55667999999999999888653
No 6
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=98.00 E-value=3.6e-06 Score=54.23 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhh
Q 036720 67 SVEERAATRIQKAFRAYRARKSIR 90 (291)
Q Consensus 67 ~~ee~AAi~IQsafRGylARr~lr 90 (291)
.+||.||+.||.|||+|+.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478999999999999999998865
No 7
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.92 E-value=3.9e-06 Score=52.49 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHHH
Q 036720 67 SVEERAATRIQKAFRAYRARKS 88 (291)
Q Consensus 67 ~~ee~AAi~IQsafRGylARr~ 88 (291)
.+||.||+.||.|||+||.|+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999865
No 8
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=97.68 E-value=8.3e-05 Score=52.87 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=37.9
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 036720 93 RGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTEG 139 (291)
Q Consensus 93 kgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e~ 139 (291)
..++.||+.+||+++|+.+.. ...+++.||+.+||+.+|..+..
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~---~r~aai~IQ~~~Rg~~aR~~~~~ 49 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLC---MQRAAITVQRYVRGYQARCYAKF 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999944 35699999999999999987643
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.33 E-value=0.00036 Score=50.70 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhHHHHHHhhhh----hhhhHHHhhhhhHHHHH
Q 036720 71 RAATRIQKAFRAYRARKSIRRL----RGTGRFNILIQDHSVQK 109 (291)
Q Consensus 71 ~AAi~IQsafRGylARr~lr~L----kgivrLQalvRG~lvRr 109 (291)
..++.||++.|||++|+.|..+ .++..||.-+|+++.++
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666666666666666643 24445555555555554
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.25 E-value=0.00026 Score=51.39 Aligned_cols=42 Identities=17% Similarity=-0.056 Sum_probs=21.2
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 036720 95 TGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMV 136 (291)
Q Consensus 95 ivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~ 136 (291)
++.||+.+||+++|+.+...+....|+..||.-+|++..++.
T Consensus 7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455555555555554444444455556666665555443
No 11
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.21 E-value=0.00054 Score=49.65 Aligned_cols=42 Identities=19% Similarity=0.088 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhh----hhhhHHHhhhhhHHHHHHH
Q 036720 70 ERAATRIQKAFRAYRARKSIRRL----RGTGRFNILIQDHSVQKQT 111 (291)
Q Consensus 70 e~AAi~IQsafRGylARr~lr~L----kgivrLQalvRG~lvRrQ~ 111 (291)
...++.||++.|||++|+.|..+ .++..||.-+|+++.++.-
T Consensus 4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 35689999999999999999966 3677899999999988753
No 12
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.19 E-value=0.00061 Score=49.45 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=39.8
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 036720 93 RGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTE 138 (291)
Q Consensus 93 kgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e 138 (291)
.-++.||+.+||+++|+.+...+....|+..||.-+|++...+...
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 3578999999999999999988888888889999999988776543
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.92 E-value=0.00083 Score=70.64 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhHHHHHHhhhh----hhhhHHHhhhhhHHHHHHH
Q 036720 71 RAATRIQKAFRAYRARKSIRRL----RGTGRFNILIQDHSVQKQT 111 (291)
Q Consensus 71 ~AAi~IQsafRGylARr~lr~L----kgivrLQalvRG~lvRrQ~ 111 (291)
.+|+.||++||||++|+.|..+ .+++.||..+||+++||..
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 4688888888888888888865 3677777777777777654
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.41 E-value=0.0028 Score=54.03 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhh-hhhhhhHHHhhh
Q 036720 68 VEERAATRIQKAFRAYRARKSIR-RLRGTGRFNILI 102 (291)
Q Consensus 68 ~ee~AAi~IQsafRGylARr~lr-~LkgivrLQalv 102 (291)
-...|+|+||++.||||+|+.++ .+.|++++.++.
T Consensus 43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45668888888888888888888 667777776654
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.84 E-value=0.0062 Score=65.80 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhHHHHHHhhhh----hhhhHHHhhhhhHHHHHHH
Q 036720 71 RAATRIQKAFRAYRARKSIRRL----RGTGRFNILIQDHSVQKQT 111 (291)
Q Consensus 71 ~AAi~IQsafRGylARr~lr~L----kgivrLQalvRG~lvRrQ~ 111 (291)
.+|+.||++||||++|+.|..+ .+++.||+.+||++.|+.+
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5899999999999999999966 4799999999999999763
No 16
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=94.74 E-value=0.047 Score=57.50 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=39.0
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 036720 94 GTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVTE 138 (291)
Q Consensus 94 givrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~e 138 (291)
.++.||+.+||+++|+.+...+....+++.||+.+|++..++.+.
T Consensus 781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 578899999999999999776666789999999999998887653
No 17
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=93.15 E-value=0.066 Score=46.38 Aligned_cols=29 Identities=38% Similarity=0.439 Sum_probs=24.4
Q ss_pred cchhhHHHHHHHHHHHHHhhHHHHHHhhh
Q 036720 63 FLRISVEERAATRIQKAFRAYRARKSIRR 91 (291)
Q Consensus 63 ~~~~~~ee~AAi~IQsafRGylARr~lr~ 91 (291)
......++.||+.||.|||.|+.|+.+..
T Consensus 123 t~~~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 123 TLRRKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34567889999999999999999887664
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.88 E-value=0.16 Score=54.97 Aligned_cols=45 Identities=13% Similarity=-0.040 Sum_probs=38.8
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 036720 93 RGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVT 137 (291)
Q Consensus 93 kgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~ 137 (291)
..++.||+.+||+++|+.+...+....+++.||+.+|++..++.+
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 357889999999999999987666678999999999999887654
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=90.25 E-value=0.18 Score=52.79 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhhh
Q 036720 70 ERAATRIQKAFRAYRARKSIRRLRG 94 (291)
Q Consensus 70 e~AAi~IQsafRGylARr~lr~Lkg 94 (291)
..+|+.||++||||++|+.|..++.
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=85.77 E-value=1.1 Score=48.47 Aligned_cols=41 Identities=5% Similarity=0.069 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhh-hhhHHHhhhhhHHHHHHH
Q 036720 70 ERAATRIQKAFRAYRARKSIRRLR-GTGRFNILIQDHSVQKQT 111 (291)
Q Consensus 70 e~AAi~IQsafRGylARr~lr~Lk-givrLQalvRG~lvRrQ~ 111 (291)
..+|+.||. +|||++|+.|+.++ +++.+|.+-|+...|+..
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457777775 69999999999776 778888887887766554
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=76.15 E-value=3.9 Score=34.63 Aligned_cols=33 Identities=6% Similarity=0.104 Sum_probs=23.2
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 036720 93 RGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQ 125 (291)
Q Consensus 93 kgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQ 125 (291)
..++.+|+.||||++|+++.-.+..+..+..+.
T Consensus 46 ~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 357889999999999999965544444333333
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=59.14 E-value=15 Score=39.77 Aligned_cols=44 Identities=0% Similarity=-0.170 Sum_probs=31.1
Q ss_pred hhhhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 036720 91 RLRGTGRFNILIQDHSVQKQTSSAINNIHSWCNIQTQIRNRRLCMVT 137 (291)
Q Consensus 91 ~LkgivrLQalvRG~lvRrQ~~~tl~~~~a~vkIQa~vR~rr~R~~~ 137 (291)
.+..++.+|..+||+++|+++.. ...+++.||...|.++.|...
T Consensus 773 ~~~~~~~~iq~~r~~l~r~~~~k---~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 773 DPDHLAELVKRVNHWLICSRWKK---VQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 34556666667899999999943 345777788777777666544
No 23
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=44.16 E-value=9.6 Score=22.72 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhHHHH
Q 036720 70 ERAATRIQKAFRAYRAR 86 (291)
Q Consensus 70 e~AAi~IQsafRGylAR 86 (291)
--|+..||-.||-+..|
T Consensus 6 iYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 6 IYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 46899999999998775
No 24
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=40.19 E-value=20 Score=21.85 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 036720 71 RAATRIQKAFRAYRARKS 88 (291)
Q Consensus 71 ~AAi~IQsafRGylARr~ 88 (291)
-||.+||-.||-+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 589999999999998876
No 25
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=39.94 E-value=28 Score=37.26 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhhhh
Q 036720 120 SWCNIQTQIRNRRLCM 135 (291)
Q Consensus 120 a~vkIQa~vR~rr~R~ 135 (291)
+++.||+.+++++.++
T Consensus 789 sl~~IQ~~ir~f~~fr 804 (995)
T 2ycu_A 789 SIESVQSFMNAHKEYK 804 (995)
T ss_dssp HHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444555555444443
No 26
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=36.65 E-value=23 Score=21.62 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhHHHHHHh
Q 036720 72 AATRIQKAFRAYRARKSI 89 (291)
Q Consensus 72 AAi~IQsafRGylARr~l 89 (291)
|-..||-.||.|..|+.-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 567899999999998764
No 27
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=33.49 E-value=33 Score=22.54 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhHHHHHHh
Q 036720 70 ERAATRIQKAFRAYRARKSI 89 (291)
Q Consensus 70 e~AAi~IQsafRGylARr~l 89 (291)
--|-..||-.||.|..|+.-
T Consensus 11 fYatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 11 FYATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999874
No 28
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=27.40 E-value=46 Score=34.81 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 036720 120 SWCNIQTQIRNRRLCMVT 137 (291)
Q Consensus 120 a~vkIQa~vR~rr~R~~~ 137 (291)
.++.||+.+|++.+|+.|
T Consensus 770 ~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 770 ACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666655544
No 29
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=21.83 E-value=11 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhHHHH
Q 036720 70 ERAATRIQKAFRAYRAR 86 (291)
Q Consensus 70 e~AAi~IQsafRGylAR 86 (291)
--||..||-.||-+..|
T Consensus 5 iYAallI~d~~r~~k~~ 21 (23)
T 3dve_B 5 VYAALMIFDFYKQNKTS 21 (26)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 46899999999977544
Done!