BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036721
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 110/201 (54%), Gaps = 19/201 (9%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGK--VTFPGVCVTWGLIVMVMIYSLAHISGAHFNP 58
+ AE GT++++F GCG+ + + + F GV + WGL V+ M +++ HISG HFNP
Sbjct: 8 LAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGHFNP 67
Query: 59 AVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLM------LDVTPQAY----FGTV 108
AVTI L +F ++V Y++AQVVG ++A+ L L+ D + +G
Sbjct: 68 AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH 127
Query: 109 PVG--SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGA 166
G S + V E+++S + VI GA TD A F +A+G+ + L ++ P++
Sbjct: 128 SPGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAPAGFAPIAIGLALTLIHLISIPVTNT 186
Query: 167 SMNPARSIGPAIVKHKFRGIW 187
S+NPARS AI F+G W
Sbjct: 187 SVNPARSTAVAI----FQGGW 203
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 111/201 (55%), Gaps = 19/201 (9%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGK--VTFPGVCVTWGLIVMVMIYSLAHISGAHFNP 58
+ AE GT++++F GCG+ + + + + F GV + WGL V+ M +++ HISG HFNP
Sbjct: 8 LAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGHFNP 67
Query: 59 AVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLM------LDVTPQAY----FGTV 108
AVTI L +F ++V Y++AQVVG ++A+ L L+ D + +G
Sbjct: 68 AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH 127
Query: 109 PVG--SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGA 166
G S + V E+++S + VI GA TD A F +A+G+ + L ++ P++
Sbjct: 128 SPGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAPAGFAPIAIGLALTLIGLISIPVTNF 186
Query: 167 SMNPARSIGPAIVKHKFRGIW 187
S+NPARS AI F+G W
Sbjct: 187 SVNPARSTAVAI----FQGGW 203
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 111/201 (55%), Gaps = 19/201 (9%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGK--VTFPGVCVTWGLIVMVMIYSLAHISGAHFNP 58
+ AE GT++++F GCG+ + + + + F GV + +GL V+ M +++ HISG HFNP
Sbjct: 5 LAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNP 64
Query: 59 AVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLM------LDVTPQAY----FGTV 108
AVTI L +F ++V Y++AQVVG ++A+ L L+ D + +G
Sbjct: 65 AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH 124
Query: 109 PVG--SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGA 166
G S + V E+++S + VI GA TD A F +A+G+ + L ++ P++
Sbjct: 125 SPGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAPAGFAPIAIGLALTLIHLISIPVTNT 183
Query: 167 SMNPARSIGPAIVKHKFRGIW 187
S+NPARS AI F+G W
Sbjct: 184 SVNPARSTAVAI----FQGGW 200
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 111/201 (55%), Gaps = 19/201 (9%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGK--VTFPGVCVTWGLIVMVMIYSLAHISGAHFNP 58
+ AE GT++++F GCG+ + + + + F GV + +GL V+ M +++ HISG HFNP
Sbjct: 8 LAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNP 67
Query: 59 AVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLM------LDVTPQAY----FGTV 108
AVTI L +F ++V Y++AQVVG ++A+ L L+ D + +G
Sbjct: 68 AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH 127
Query: 109 PVG--SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGA 166
G S + V E+++S + VI GA TD A F +A+G+ + L ++ P++
Sbjct: 128 SPGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAPAGFAPIAIGLALTLIGLISIPVTNF 186
Query: 167 SMNPARSIGPAIVKHKFRGIW 187
S+NPARS AI F+G W
Sbjct: 187 SVNPARSTAVAI----FQGGW 203
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 107/213 (50%), Gaps = 25/213 (11%)
Query: 2 IAELIGTYFIIFAGCGAVAVD-KIYGKVTFP-----------------GVCVTWGLIVMV 43
IAE IGT+ ++F G G+ AV I T P + + +G +
Sbjct: 9 IAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAA 68
Query: 44 MIYSLAHISGAHFNPAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQA 103
IY+L +ISG H NPAVTI L ++F R+V YI+AQ++G+ S +
Sbjct: 69 SIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAAT 128
Query: 104 YFG---TVPVG--SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVF 158
G T P S Q+ +AE++ +FLLM I G D+RA F G+ +G+T+ +
Sbjct: 129 VGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGLTVAGIIT 188
Query: 159 VAGPISGASMNPARSIGPAIVKHKFRG--IWLY 189
G ISG+S+NPAR+ GP + F G +W Y
Sbjct: 189 TLGNISGSSLNPARTFGPYLNDMIFAGTDLWNY 221
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 110/201 (54%), Gaps = 19/201 (9%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGK--VTFPGVCVTWGLIVMVMIYSLAHISGAHFNP 58
+ AE GT++++F G G+ + + + + F GV + +GL V+ M +++ HISG HFNP
Sbjct: 8 LAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNP 67
Query: 59 AVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLM------LDVTPQAY----FGTV 108
AVTI L +F ++V Y++AQVVG ++A+ L L+ D + +G
Sbjct: 68 AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH 127
Query: 109 PVG--SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGA 166
G S + V E+++S + VI GA TD A F +A+G+ + L ++ P++
Sbjct: 128 SPGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAPAGFAPIAIGLALTLIHLISIPVTNC 186
Query: 167 SMNPARSIGPAIVKHKFRGIW 187
S+NPARS AI F+G W
Sbjct: 187 SVNPARSTAVAI----FQGGW 203
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 110/201 (54%), Gaps = 19/201 (9%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGK--VTFPGVCVTWGLIVMVMIYSLAHISGAHFNP 58
+ AE GT++++F G G+ + + + + F GV + +GL V+ M +++ HISG HFNP
Sbjct: 8 LAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNP 67
Query: 59 AVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLM------LDVTPQAY----FGTV 108
AVTI L +F ++V Y++AQVVG ++A+ L L+ D + +G
Sbjct: 68 AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH 127
Query: 109 PVG--SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGA 166
G S + V E+++S + VI GA TD A F +A+G+ + L ++ P++
Sbjct: 128 SPGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAPAGFAPIAIGLALTLIHLISIPVTNC 186
Query: 167 SMNPARSIGPAIVKHKFRGIW 187
S+NPARS AI F+G W
Sbjct: 187 SVNPARSTAVAI----FQGGW 203
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 109/201 (54%), Gaps = 19/201 (9%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGK--VTFPGVCVTWGLIVMVMIYSLAHISGAHFNP 58
+ AE GT++++F G G+ + + + + F GV + +GL V+ M +++ HISG HFNP
Sbjct: 8 LAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNP 67
Query: 59 AVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLM------LDVTPQAY----FGTV 108
AVTI L +F ++V Y++AQVVG ++A+ L L+ D + +G
Sbjct: 68 AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH 127
Query: 109 PVG--SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGA 166
G S + V E+++S + VI GA TD A F +A+G+ L ++ P++
Sbjct: 128 SPGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAPAGFAPIAIGLACTLIHLISIPVTNT 186
Query: 167 SMNPARSIGPAIVKHKFRGIW 187
S+NPARS AI F+G W
Sbjct: 187 SVNPARSTAVAI----FQGGW 203
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 31/201 (15%)
Query: 3 AELIGTYFIIFAGCGAVAV--------DK----------IYGKVTFPGVCVTWGLIVMVM 44
AE++GT+ ++F G GA + DK + G + + + + L + +
Sbjct: 11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAV 70
Query: 45 IYSLAHISGAHFNPAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAY 104
IYSL ISGAH NPAVTIAL +F R+V YIVAQ +G+ L G+L + V P A
Sbjct: 71 IYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAAL--GSLLFLACVGPAA- 127
Query: 105 FGTV-PVGSNA--------QSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIML 155
TV +G+ A Q+ + E I +FLLM VI G D+RA F G+ +G+T+
Sbjct: 128 -ATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGG 186
Query: 156 NVFVAGPISGASMNPARSIGP 176
+ G I+G+S+NPAR+ GP
Sbjct: 187 IITTIGNITGSSLNPARTFGP 207
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPAV 60
++ E IGT+ ++ G VAVD+ F G+ + GL V +I ++ +I+G+ NPA
Sbjct: 148 ILTEAIGTFLLMLVIMG-VAVDE-RAPPGFAGLVI--GLTVGGIITTIGNITGSSLNPAR 203
Query: 61 TIALAIFRQFK----RRQVPLYIVAQVVGSLLAS 90
T + + P+Y++ +VG++ A+
Sbjct: 204 TFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAA 237
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 26/202 (12%)
Query: 2 IAELIGTYFIIFAGCGAVAVDKIYGKVTFP--GVCVTWGLIVMVMIYSLAHISGAHFNPA 59
IAE +GT +IF G G VA K+ G +F + V WGL V + IY A +SGAH NPA
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAG-ASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPA 70
Query: 60 VTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTL-----SLMLD--------------VT 100
VTIAL +F F +R+V +IV+QV G+ A+ + +L D V
Sbjct: 71 VTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVD 130
Query: 101 PQAYFGTVPVG--SNAQSFVAEIIISFLLMFVISGAVTDDRAI--GQFGGVAVGMTIMLN 156
F T P + Q+F E++I+ +LM +I D + G + +G+ I +
Sbjct: 131 LAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVI 190
Query: 157 VFVAGPISGASMNPARSIGPAI 178
GP++G +MNPAR GP +
Sbjct: 191 GASMGPLTGFAMNPARDFGPKV 212
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 33 VCVTWGLIVMVMIYSLAHISGAHFNPAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGT 92
+ + +GL + M+ HISG H NPAVT+A+ R+ + YI AQ +G+++ +G
Sbjct: 51 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGI 110
Query: 93 LSLMLDVTPQAYFGTVPVG------SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGG 146
L L VTP + G + V + + E+II+F L+F I A DD+ G
Sbjct: 111 LYL---VTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIF-ASCDDKRTDVTGS 166
Query: 147 V--AVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLY 189
V A+G ++ + A +GASMNPARS GPA++ + W+Y
Sbjct: 167 VALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIY 211
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 33 VCVTWGLIVMVMIYSLAHISGAHFNPAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGT 92
+ + +GL + M+ HISG H NPAVT+A+ R+ + YI AQ +G+++ +G
Sbjct: 90 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGI 149
Query: 93 LSLMLDVTPQAYFGTVPVG------SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGG 146
L L VTP + G + V + + E+II+F L+F I A DD+ G
Sbjct: 150 LYL---VTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIF-ASCDDKRTDVTGS 205
Query: 147 V--AVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLY 189
V A+G ++ + A +GASMNPARS GPA++ + W+Y
Sbjct: 206 VALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIY 250
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPAV 60
+ AE T F +F G GA ++ G + V + +GL + ++ ++ HISGAH NPAV
Sbjct: 9 IFAEFFATLFYVFFGLGA-SLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAV 67
Query: 61 TIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTV------PVGSNA 114
T A + Q + Y+VAQ++G++ + +++ VTP A G + P S
Sbjct: 68 TFAFLVGSQMSLLRAICYVVAQLLGAVAGA---AVLYSVTPPAVRGNLALNTLHPGVSVG 124
Query: 115 QSFVAEIIISFLLMFVISGAVTDDRAIGQFGGV--AVGMTIMLNVFVAGPISGASMNPAR 172
Q+ + EI ++ + I A D+R G+ G V AVG ++ L +GA MNPAR
Sbjct: 125 QATIVEIFLTLQFVLCIF-ATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPAR 183
Query: 173 SIGPAIVKHKFRGIWLY 189
S PAI+ F W+Y
Sbjct: 184 SFAPAILTRNFTNHWVY 200
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPAV 60
+ AE T F +F G GA ++ G + V + +GL + ++ ++ HISGAH NPAV
Sbjct: 7 IFAEFFATLFYVFFGLGA-SLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAV 65
Query: 61 TIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTV------PVGSNA 114
T A + Q + Y+VAQ++G++ + +++ VTP A G + P S
Sbjct: 66 TFAFLVGSQMSLLRAICYVVAQLLGAVAGA---AVLYSVTPPAVRGNLALNTLHPGVSVG 122
Query: 115 QSFVAEIIISFLLMFVISGAVTDDRAIGQFGGV--AVGMTIMLNVFVAGPISGASMNPAR 172
Q+ + EI ++ + I A D+R G+ G V AVG ++ L +GA MNPAR
Sbjct: 123 QATIVEIFLTLQFVLCIF-ATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPAR 181
Query: 173 SIGPAIVKHKFRGIWLY 189
S PAI+ F W+Y
Sbjct: 182 SFAPAILTRNFTNHWVY 198
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPAV 60
+ AE T F +F G GA ++ G + V + +GL + ++ ++ HISGAH NPAV
Sbjct: 13 IFAEFFATLFYVFFGLGA-SLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAV 71
Query: 61 TIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTV------PVGSNA 114
T A + Q + Y+VAQ++G++ + +++ VTP A G + P S
Sbjct: 72 TFAFLVGSQMSLLRAICYVVAQLLGAVAGA---AVLYSVTPPAVRGNLALNTLHPGVSVG 128
Query: 115 QSFVAEIIISFLLMFVISGAVTDDRAIGQFGGV--AVGMTIMLNVFVAGPISGASMNPAR 172
Q+ + EI ++ + I A D+R G+ G V AVG ++ L +GA MNPAR
Sbjct: 129 QATIVEIFLTLQFVLCIF-ATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPAR 187
Query: 173 SIGPAIVKHKFRGIWLY 189
S PAI+ F W+Y
Sbjct: 188 SFAPAILTRNFTNHWVY 204
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPAV 60
+ AE + F +F G GA ++ G + V + +GL + ++ ++ HISGAH NPAV
Sbjct: 13 ICAEFFASLFYVFFGLGA-SLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAV 71
Query: 61 TIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTV------PVGSNA 114
T A + Q + Y+VAQ++G++ + +++ VTP A G + P S
Sbjct: 72 TFAFLVGSQMSLLRAICYMVAQLLGAVAGA---AVLYSVTPPAVRGNLALNTLHPGVSVG 128
Query: 115 QSFVAEIIISFLLMFVISGAVTDDRAIGQFGGV--AVGMTIMLNVFVAGPISGASMNPAR 172
Q+ + EI ++ + I A D+R G+ G V AVG ++ L +GA MNPAR
Sbjct: 129 QATIVEIFLTLQFVLCIF-ATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPAR 187
Query: 173 SIGPAIVKHKFRGIWLY 189
S PAI+ F W+Y
Sbjct: 188 SFAPAILTRNFTNHWVY 204
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 33 VCVTWGLIVMVMIYSLAHISGAHFNPAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGT 92
+ + +GL + M+ HISG H NPAVT+A+ R+ + YI AQ +G+++ +G
Sbjct: 51 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGI 110
Query: 93 LSLMLDVTPQAYFGTVPVG------SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGG 146
L L VTP + G + V + + E+II+F L+F I A D + G
Sbjct: 111 LYL---VTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIF-ASCDSKRTDVTGS 166
Query: 147 V--AVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLY 189
V A+G ++ + A +GASMNPARS GPA++ + W+Y
Sbjct: 167 VALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIY 211
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 103/202 (50%), Gaps = 26/202 (12%)
Query: 2 IAELIGTYFIIFAGCGAVAVDKIYGKVTFP--GVCVTWGLIVMVMIYSLAHISGAHFNPA 59
IAE +GT +IF G G VA K+ G +F + V +GL V + IY A +SGAH NPA
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGA-SFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPA 70
Query: 60 VTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTL-----SLMLD--------------VT 100
VTIAL +F F +R+V +IV+QV G+ A+ + +L D V
Sbjct: 71 VTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVD 130
Query: 101 PQAYFGTVPVG--SNAQSFVAEIIISFLLMFVISGAVTDDRAI--GQFGGVAVGMTIMLN 156
F T P + Q+F E++I+ +LM +I D + G + +G+ I +
Sbjct: 131 LAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVI 190
Query: 157 VFVAGPISGASMNPARSIGPAI 178
GP++G +MNPAR GP +
Sbjct: 191 GASMGPLTGTAMNPARDFGPKV 212
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 6/187 (3%)
Query: 33 VCVTWGLIVMVMIYSLAHISGAHFNPAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGT 92
V + +GL + + S+ HISGAH NPAVT+ L + Q + +YI+AQ VG+++A+
Sbjct: 54 VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAI 113
Query: 93 LSLMLDVTPQAYFG---TVPVGSNAQSFVAEIIISFLLMFVISGAVTD--DRAIGQFGGV 147
LS + P G P ++ Q EII + L+ + A TD R +G G +
Sbjct: 114 LSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVL-ATTDRRRRDLGGSGPL 172
Query: 148 AVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYXXXXXXXXXXXXFAYNLI 207
A+G ++ L +A +G +NPARS G +++ H F+ W++ Y+ I
Sbjct: 173 AIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFI 232
Query: 208 KIHRQAN 214
R ++
Sbjct: 233 LAPRSSD 239
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 33 VCVTWGLIVMVMIYSLAHISGAHFNPAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGT 92
+ + +GL + M+ HISG H NPAVT+A+ R+ + YI AQ +G+++ +G
Sbjct: 42 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGI 101
Query: 93 LSLMLDVTPQAYFGTVPVG------SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGG 146
L L VTP + G + V + + E+II+F L+F I A D + G
Sbjct: 102 LYL---VTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIF-ASCDSKRTDVTGS 157
Query: 147 V--AVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLY 189
+ A+G ++ + A +GASMNPARS GPA++ + W+Y
Sbjct: 158 IALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIY 202
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 15/203 (7%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYGK--VTFPGVCVTWGLIVMVMIYSLAHISGAHFNP 58
++AE GT++++F GCG+ + + + F GV + +GL V+ M Y++ ISG HFNP
Sbjct: 33 LLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNP 92
Query: 59 AVTIALAIFRQFKRRQVPLYIVAQVVGS--------LLASGTLSLMLDVTPQAYFGTVPV 110
AV++ L + +F + Y++AQV G+ ++A+G + L +G
Sbjct: 93 AVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSP 152
Query: 111 G--SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASM 168
G S + + EII++ + VI G+ T R F +A+G+ + L ++ P++ S+
Sbjct: 153 GGYSLVSALLIEIILTAFFLIVILGS-THGRVPAGFAPIAIGLALTLIHLISIPVTNTSV 211
Query: 169 NPARSIGPAIV--KHKFRGIWLY 189
NPARS G A+ + +WL+
Sbjct: 212 NPARSTGQALFVGGWALQQLWLF 234
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 33 VCVTWGLIVMVMIYSLAHISGAHFNPAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGT 92
V + +GL + + S+ HISGAH NPAVT+ L + Q + +YI+AQ VG+++A+
Sbjct: 52 VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAI 111
Query: 93 LSLMLDVTPQAYFGTVPVG---SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGG--- 146
LS + G + ++ Q EII + L+ + T DR GG
Sbjct: 112 LSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCV--LATTDRRRRDLGGSAP 169
Query: 147 VAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLY 189
+A+G+++ L +A +G +NPARS G A++ H F W++
Sbjct: 170 LAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIF 212
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 13/189 (6%)
Query: 3 AELIGTYFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPAVTI 62
AE + T +F G G+ A+ T + + +GL + + +L +SG H NPA+T+
Sbjct: 17 AEFLATLIFVFFGLGS-ALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITL 75
Query: 63 ALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVG------SNAQS 116
AL + Q + Y+ AQ+VG++ +G ++ V P G + V + Q+
Sbjct: 76 ALLVGNQISLLRAFFYVAAQLVGAIAGAG---ILYGVAPLNARGNLAVNALNNNTTQGQA 132
Query: 117 FVAEIIISFLLMFVISGAVTDDRAIGQFG--GVAVGMTIMLNVFVAGPISGASMNPARSI 174
V E+I++F L I A TD R G +++G+++ L V +G SMNPARS
Sbjct: 133 MVVELILTFQLALCIF-ASTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSF 191
Query: 175 GPAIVKHKF 183
GPA+V ++F
Sbjct: 192 GPAVVMNRF 200
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 2 IAELIGT----YFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFN 57
IAE I T Y + G + G V G+ +G ++ V++Y A ISG H N
Sbjct: 61 IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 120
Query: 58 PAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFG----TVPVGSN 113
PAVT L + R+ + + +Y++AQ +G++ G + + P FG +V +G N
Sbjct: 121 PAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMK-GPYNQFGGGANSVALGYN 179
Query: 114 AQSFV-AEIIISFLLMFVISGAVTDDRAIGQ-----FGGVAVGMTIMLNVFVAGPISGAS 167
+ + AEII +F+L++ + A R+ + +G + + PI+G
Sbjct: 180 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTG 239
Query: 168 MNPARSIGPAIV 179
+NPARS G A++
Sbjct: 240 INPARSFGAAVI 251
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 2 IAELIGT----YFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFN 57
IAE I T Y + G + G V G+ +G ++ V++Y A ISG H N
Sbjct: 65 IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 124
Query: 58 PAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFG----TVPVGSN 113
PAVT L + R+ + + +Y++AQ +G++ G + + P FG +V +G N
Sbjct: 125 PAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMK-GPYNQFGGGANSVALGYN 183
Query: 114 AQSFV-AEIIISFLLMFVISGAVTDDRAIGQ-----FGGVAVGMTIMLNVFVAGPISGAS 167
+ + AEII +F+L++ + A R+ + +G + + PI+G
Sbjct: 184 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTG 243
Query: 168 MNPARSIGPAIV 179
+NPARS G A++
Sbjct: 244 INPARSFGAAVI 255
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 2 IAELIGT----YFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFN 57
IAE I T Y + G + G V G+ +G ++ V++Y A ISG H N
Sbjct: 42 IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 101
Query: 58 PAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFG----TVPVGSN 113
PAVT L + R+ + +Y++AQ +G++ G + + P FG +V +G N
Sbjct: 102 PAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMK-GPYNQFGGGANSVALGYN 160
Query: 114 AQSFV-AEIIISFLLMFVISGAVTDDRAIGQ-----FGGVAVGMTIMLNVFVAGPISGAS 167
+ + AEII +F+L++ + A R+ + +G + + PI+G
Sbjct: 161 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTG 220
Query: 168 MNPARSIGPAIV 179
+NPARS G A++
Sbjct: 221 INPARSFGAAVI 232
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 2 IAELIGT----YFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFN 57
IAE I T Y + G + G V G+ +G ++ V++Y A ISG H N
Sbjct: 42 IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 101
Query: 58 PAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFG----TVPVGSN 113
PAVT L + R+ + +Y++AQ +G++ G + + P FG +V +G N
Sbjct: 102 PAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMK-GPYNQFGGGANSVALGYN 160
Query: 114 AQSFV-AEIIISFLLMFVISGAVTDDRAIGQ-----FGGVAVGMTIMLNVFVAGPISGAS 167
+ + AEII +F+L++ + A R+ + +G + + PI+G
Sbjct: 161 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTG 220
Query: 168 MNPARSIGPAIV 179
+NPARS G A++
Sbjct: 221 INPARSFGAAVI 232
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 2 IAELIGT----YFIIFAGCGAVAVDKIYGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFN 57
IAE I T Y + G + G V G+ +G ++ V++Y A ISG H N
Sbjct: 65 IAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 124
Query: 58 PAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFG----TVPVGSN 113
PAVT L + R+ + +Y++AQ +G++ G + + P FG +V +G N
Sbjct: 125 PAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMK-GPYNQFGGGANSVALGYN 183
Query: 114 AQSFV-AEIIISFLLMFVISGAVTDDRAIGQ-----FGGVAVGMTIMLNVFVAGPISGAS 167
+ + AEII +F+L++ + A R+ + +G + + PI+G
Sbjct: 184 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTG 243
Query: 168 MNPARSIGPAIV 179
+NPARS G A++
Sbjct: 244 INPARSFGAAVI 255
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 14/188 (7%)
Query: 1 MIAELIGTYFIIFAGCGAVAVDKIYG-KVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPA 59
I E +GT+ ++F G GA A G + +C+ WGL V I A +SGAH N A
Sbjct: 13 FIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLA 72
Query: 60 VTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLML------DVTPQAYFGTV--PVG 111
V+I L+ +F +++P+Y AQ++G+ + + T+ + PQ + T P
Sbjct: 73 VSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSI 132
Query: 112 SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFG----GVAVGMTIMLNVFVAGPISGAS 167
S +F E+I++ +L+ VI V D+ G+F VG+ I+ G +G +
Sbjct: 133 SLTGAFFNELILTGILLLVIL-VVVDENICGKFHILKLSSVVGLIILCIGITFGGNTGFA 191
Query: 168 MNPARSIG 175
+NP+R +G
Sbjct: 192 LNPSRDLG 199
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 112 SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGG-----VAVGMTIMLNVFVAGPISGA 166
S + F+ E + +F+LMF+ GA + G G + G+ + + V+ +SGA
Sbjct: 8 SYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGA 67
Query: 167 SMNPARSIG-PAIVKHKFRGIWLY 189
+N A SIG +I K + I +Y
Sbjct: 68 HLNLAVSIGLSSINKFDLKKIPVY 91
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 38 GLIVMVMIYSLAHISGAHFNPAVTIALAIFRQFKRRQVPLYIVAQVVGSLLASGTLSLML 97
G VMV ++ +SG + NPAVT+AL + R + L Q+V
Sbjct: 93 GFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIV---AGMAAAGAAS 149
Query: 98 DVTP-QAYFGTVPVGSNAQS---FVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTI 153
+TP + F G +++ F+ + L + V+ AV RA F +G+ +
Sbjct: 150 AMTPGEIAFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRAT-WFAPFVIGIAL 208
Query: 154 MLNVFVAGPISGASMNPARSIGPAIVKHKFRGI-WLY 189
++ + +GA +NPARS GPA+ F W+Y
Sbjct: 209 LIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIY 245
>pdb|1J5S|A Chain A, Crystal Structure Of Uronate Isomerase (Tm0064) From
Thermotoga Maritima At 2.85 A Resolution
pdb|1J5S|B Chain B, Crystal Structure Of Uronate Isomerase (Tm0064) From
Thermotoga Maritima At 2.85 A Resolution
pdb|1J5S|C Chain C, Crystal Structure Of Uronate Isomerase (Tm0064) From
Thermotoga Maritima At 2.85 A Resolution
Length = 463
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 92 TLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFL----LMFVISGAVTDDRAIGQFG 145
T+S + P Y G P N F E+ + +L L++ ++G VTD R + FG
Sbjct: 361 TISTIARAFPNVYVG-APWWFNDSPFGMEMHLKYLASVDLLYNLAGMVTDSRKLLSFG 417
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.142 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,530,790
Number of Sequences: 62578
Number of extensions: 191371
Number of successful extensions: 610
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 41
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)