BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036722
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K1K|C Chain C, Green Fluorescent Protein Bound To Minimizer Nanobody
pdb|3K1K|D Chain D, Green Fluorescent Protein Bound To Minimizer Nanobody
Length = 123
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 27 LTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDS 86
+ Q + G L+ GGS L + G NRY WY+ P K WVA + S
Sbjct: 1 MAQVQLVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRS 60
Query: 87 S------GLLTINR 94
S G TI+R
Sbjct: 61 SYEDSVKGRFTISR 74
>pdb|3OGO|E Chain E, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|F Chain F, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|G Chain G, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|H Chain H, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
Length = 123
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSS--- 87
Q + G L+ GGS L + G NRY WY+ P K WVA + SS
Sbjct: 4 QLVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSSAGDRSSYED 63
Query: 88 ---GLLTINR 94
G TI+R
Sbjct: 64 SVKGRFTISR 73
>pdb|1UB5|H Chain H, Crystal Structure Of Antibody 19g2 With Hapten At 100k
pdb|1UB5|A Chain A, Crystal Structure Of Antibody 19g2 With Hapten At 100k
Length = 209
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
L G L+ GGS +L + G + +RY+ W + IP K + WVA+
Sbjct: 5 LESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVAS 50
>pdb|1FL3|H Chain H, Crystal Structure Of The Blue Fluorescent Antibody
(19g2) In Complex With Stilbene Hapten At 277k
pdb|1FL3|A Chain A, Crystal Structure Of The Blue Fluorescent Antibody
(19g2) In Complex With Stilbene Hapten At 277k
Length = 208
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
L G L+ GGS +L + G + +RY+ W + IP K + WVA+
Sbjct: 4 LESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVAS 49
>pdb|1UB6|H Chain H, Crystal Structure Of Antibody 19g2 With Sera Ligand
pdb|1UB6|A Chain A, Crystal Structure Of Antibody 19g2 With Sera Ligand
Length = 208
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
L G L+ GGS +L + G + +RY+ W + IP K + WVA+
Sbjct: 4 LESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVAS 49
>pdb|3LS4|H Chain H, Crystal Structure Of Anti-Tetrahydrocannabinol Fab
Fragment With Thc
pdb|3LS5|H Chain H, Anti-Tetrahydrocannabinol Fab Fragment, Free Form
Length = 219
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + N YV +W + P K + WVA+
Sbjct: 5 VESGGGLVKPGGSLKLSCAASGFTFNNYVMVWLRQTPEKRLEWVAS 50
>pdb|3CFC|H Chain H, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2
Length = 213
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + +RY+ W + IP K + WVA+
Sbjct: 5 VESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVAS 50
>pdb|3CFB|H Chain H, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
pdb|3CFB|B Chain B, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
Length = 213
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + +RY+ W + IP K + WVA+
Sbjct: 5 VESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVAS 50
>pdb|3GHE|H Chain H, Crystal Structure Of Anti-Hiv-1 Fab 537-10d In Complex
With V3 Peptide Mn
Length = 233
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDS---- 86
Q + G L+ GGS L + G + N Y W + P K + WVAN + ND
Sbjct: 3 QLVQSGGGLVQPGGSLRLSCVASGFTFNNYWMSWVRQAPGKGLEWVANIKQDGNDKYYVD 62
Query: 87 --SGLLTINR 94
G TI+R
Sbjct: 63 SVKGRFTISR 72
>pdb|2X89|A Chain A, Structure Of The Beta2_microglobulin Involved In
Amyloidogenesis
pdb|2X89|B Chain B, Structure Of The Beta2_microglobulin Involved In
Amyloidogenesis
pdb|2X89|C Chain C, Structure Of The Beta2_microglobulin Involved In
Amyloidogenesis
Length = 128
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
G + GGS L + G +++RY W++ P K WVA
Sbjct: 8 GGGSVQAGGSLRLSCAASGYTDSRYCMAWFRQAPGKEREWVAR 50
>pdb|3HI5|H Chain H, Crystal Structure Of Fab Fragment Of Al-57
pdb|3HI6|H Chain H, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
pdb|3HI6|X Chain X, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
Length = 220
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q L G L+ GGS L + G + +RYV W + P K + WV+
Sbjct: 3 QLLESGGGLVQPGGSLRLSCAASGFTFSRYVMWWVRQAPGKGLEWVS 49
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 57 ENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWSASLSKE 116
EN G +IP + W A R IN +SG T++ T+ + G+V ++
Sbjct: 322 ENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAH 381
Query: 117 VQQTPVILQLLDSGNLILRGEQD 139
I +D+ ++I+ +D
Sbjct: 382 TDMVTAIATPIDNADIIVSASRD 404
>pdb|2XKN|B Chain B, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
pdb|2XKN|D Chain D, Crystal Structure Of The Fab Fragment Of The Anti-Egfr
Antibody 7a7
Length = 216
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + +RY W + P K + WVA
Sbjct: 5 VESGGVLVKPGGSLKLSCAASGFTFSRYAMSWVRQTPEKRLEWVAT 50
>pdb|3QXV|A Chain A, Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXV|B Chain B, Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXV|C Chain C, Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXV|D Chain D, Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXV|E Chain E, Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXW|A Chain A, Free Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody
pdb|3QXW|B Chain B, Free Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody
pdb|3QXW|C Chain C, Free Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody
pdb|3QXW|D Chain D, Free Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody
pdb|3QXW|E Chain E, Free Structure Of An Anti-Methotrexate Cdr1-4 Graft Vhh
Antibody
Length = 126
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA-----NRLKPIND 85
Q + G L+ GGS L + S + W++ P K +VA RL D
Sbjct: 5 QLVESGGGLVQAGGSLRLSCAASRRSSRSWAMAWFRQAPGKEREFVAKISGDGRLTTYGD 64
Query: 86 S-SGLLTINRTGNPVLTSLSM 105
S G TI+R L L M
Sbjct: 65 SVKGRFTISRDNAEYLVYLQM 85
>pdb|3EOT|H Chain H, Crystal Structure Of Lac031, An Engineered Anti-Vla1 Fab
Length = 226
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
Q + G L+ GGS L + G + +RY W + P K + WVA
Sbjct: 3 QLVESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVAT 50
>pdb|2B2X|H Chain H, Vla1 Rdeltah I-Domain Complexed With A Quadruple Mutant
Of The Aqc2 Fab
pdb|2B2X|I Chain I, Vla1 Rdeltah I-Domain Complexed With A Quadruple Mutant
Of The Aqc2 Fab
Length = 226
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G L+ GGS L + G + +RY W + P K + WVA
Sbjct: 3 QLVESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVA 49
>pdb|4DW2|H Chain H, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 212
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
G L+ GGS +L + G + +RY W + P K + WVA+
Sbjct: 8 GGDLVKPGGSLKLSCSASGFTFSRYAMSWVRQTPEKRLEWVAS 50
>pdb|3SKJ|H Chain H, Structural And Functional Characterization Of An
Agonistic Anti-Human Epha2 Monoclonal Antibody
pdb|3SKJ|I Chain I, Structural And Functional Characterization Of An
Agonistic Anti-Human Epha2 Monoclonal Antibody
Length = 231
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKP-------I 83
Q L G L+ GGS L + G + + Y+ W + P K + WV +R+ P
Sbjct: 3 QLLESGGGLVQPGGSLRLSCAASGFTFSHYMMAWVRQAPGKGLEWV-SRIGPSGGPTHYA 61
Query: 84 NDSSGLLTINR 94
+ G TI+R
Sbjct: 62 DSVKGRFTISR 72
>pdb|4DVB|A Chain A, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
pdb|4DVB|H Chain H, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
Length = 213
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
G L+ GGS +L + G + +RY W + P K + WVA+
Sbjct: 8 GGDLVKPGGSLKLSCSASGFTFSRYAMSWVRQTPEKRLEWVAS 50
>pdb|2VYR|E Chain E, Structure Of Human Mdm4 N-Terminal Domain Bound To A
Single Domain Antibody
pdb|2VYR|F Chain F, Structure Of Human Mdm4 N-Terminal Domain Bound To A
Single Domain Antibody
pdb|2VYR|G Chain G, Structure Of Human Mdm4 N-Terminal Domain Bound To A
Single Domain Antibody
pdb|2VYR|H Chain H, Structure Of Human Mdm4 N-Terminal Domain Bound To A
Single Domain Antibody
pdb|2VYR|I Chain I, Structure Of Human Mdm4 N-Terminal Domain Bound To A
Single Domain Antibody
pdb|2VYR|J Chain J, Structure Of Human Mdm4 N-Terminal Domain Bound To A
Single Domain Antibody
pdb|2VYR|K Chain K, Structure Of Human Mdm4 N-Terminal Domain Bound To A
Single Domain Antibody
pdb|2VYR|L Chain L, Structure Of Human Mdm4 N-Terminal Domain Bound To A
Single Domain Antibody
Length = 153
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
Q L G L+ GGS L + G + Y +W + P K + WV+
Sbjct: 3 QLLESGGGLVQPGGSLRLSCAASGFTFEEYAMLWVRQAPGKGLEWVSG 50
>pdb|1MHP|H Chain H, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
pdb|1MHP|X Chain X, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
Length = 219
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G L+ GGS L + G + +RY W + P K + WVA
Sbjct: 3 QLVESGGGLVQPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVA 49
>pdb|2HKF|H Chain H, Crystal Structure Of The Complex Fab M75- Peptide
pdb|2HKH|H Chain H, Crystal Structure Of The Fab M75
Length = 218
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G L+ GS +L GS+ N Y W + P K + WVA
Sbjct: 3 QVVESGGGLVQPKGSLKLSCVVSGSTLNNYAMNWVRQAPGKGLEWVA 49
>pdb|3L95|B Chain B, Crystal Structure Of The Human Notch1 Negative
Regulatory Region (Nrr) Bound To The Fab Fragment Of An
Antagonist Antibody
pdb|3L95|H Chain H, Crystal Structure Of The Human Notch1 Negative
Regulatory Region (Nrr) Bound To The Fab Fragment Of An
Antagonist Antibody
Length = 227
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDS 86
Q + G L+ GGS L + G + + Y W + P K + WVA R+ P N S
Sbjct: 3 QLVESGGGLVQPGGSLRLSCAASGFTFSSYWIHWVRQAPGKGLEWVA-RINPPNRS 57
>pdb|2FGW|H Chain H, X-Ray Structures Of Fragments From Binding And
Nonbinding Versions Of A Humanized Anti-Cd18 Antibody:
Structural Indications Of The Key Role Of Vh Residues
59 To 65
Length = 232
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLL 90
Q + G L+ GGS L + G + Y W + P K + WVA IN +G
Sbjct: 3 QLVESGGGLVQPGGSLRLSCATSGYTFTEYTMHWMRQAPGKGLEWVAG----INPKNGGT 58
Query: 91 TINR 94
+ N+
Sbjct: 59 SHNQ 62
>pdb|2UUD|H Chain H, Crystal Structure Of The Tepc15-Vk45.1 Anti-2-Phenyl-5-
Oxazolone Nq10-1.12 Scfv In Complex With The Hapten
pdb|2UUD|J Chain J, Crystal Structure Of The Tepc15-Vk45.1 Anti-2-Phenyl-5-
Oxazolone Nq10-1.12 Scfv In Complex With The Hapten
Length = 121
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 21/120 (17%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTI 92
+ G L+ GGS L + G S Y W + P K + W+A I
Sbjct: 5 VESGGGLVQPGGSLRLSCATSGFSFTDYYMAWVRQPPGKALEWLA-------------FI 51
Query: 93 NRTGNPVLTSLSMGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDY 152
N T S + ++S++ Q+ + LQ+ LR E DS Y+ DY
Sbjct: 52 RNKANGYTTDYSASVKGRFTISRDNSQSILYLQM-----NTLRAE---DSATYYCARGDY 103
>pdb|1FGV|H Chain H, X-Ray Structures Of Fragments From Binding And
Nonbinding Versions Of A Humanized Anti-Cd18 Antibody:
Structural Indications Of The Key Role Of Vh Residues
59 To 65
Length = 124
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSS 87
Q + G L+ GGS L + G + Y W + P K + WVA + P N +
Sbjct: 3 QLVESGGGLVQPGGSLRLSCATSGYTFTEYTMHWMRQAPGKGLEWVAG-INPKNGGT 58
>pdb|2KH2|B Chain B, Solution Structure Of A Scfv-Il-1b Complex
Length = 254
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G L+ GGS L + G +RY W + P K + WVA
Sbjct: 132 QLVESGGGLVQPGGSLRLSCAASGFDFSRYDMSWVRQAPGKRLEWVA 178
>pdb|3OSR|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
pdb|3OSR|B Chain B, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
Length = 653
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 18 SEFSFASDVLTSSQSL------SDGNTLISKGGSFELGFFSPGSS-------ENRYVGIW 64
+E F D L + L DGN L G E F +P EN G
Sbjct: 556 AEVKFEGDTLVNRIELKGIDFKEDGNIL---GHKLEYNFNNPAKDPRIAATMENAQKGEI 612
Query: 65 YKSIPVKTVVWVANRLKPINDSSGLLTINR 94
+IP + W A R IN +SG T++
Sbjct: 613 MPNIPQMSAFWYAVRTAVINAASGRQTVDE 642
>pdb|4DTG|H Chain H, Hemostatic Effect Of A Monoclonal Antibody Mab 2021
Blocking The Interaction Between Fxa And Tfpi In A
Rabbit Hemophilia Model
Length = 222
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G L+ GGS L + G + + Y W + P K + WVA
Sbjct: 3 QLVESGGGLVKPGGSLRLSCAASGFTFSNYAMSWVRQTPEKRLEWVA 49
>pdb|1JGV|H Chain H, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 218
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 39 LISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN-----RLKPINDSSGLLTIN 93
L+ GGS +L + G + + Y W++ P K + WVA+ R+ ++ G TI+
Sbjct: 11 LVKPGGSLQLSCAASGFTFSGYAMSWFRLTPEKRLEWVASIYNGFRIHYLDSVKGRFTIS 70
>pdb|1JGU|H Chain H, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 217
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 39 LISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN-----RLKPINDSSGLLTIN 93
L+ GGS +L + G + + Y W++ P K + WVA+ R+ ++ G TI+
Sbjct: 11 LVKPGGSLQLSCAASGFTFSGYAMSWFRLTPEKRLEWVASIYNGFRIHYLDSVKGRFTIS 70
>pdb|3MUG|B Chain B, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|D Chain D, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|F Chain F, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|H Chain H, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|J Chain J, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|L Chain L, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
Length = 241
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G ++ GGS L + G + ++Y W + P K + WVA
Sbjct: 3 QLVESGGGVVQPGGSLRLSCLASGFTFHKYGMHWVRQAPGKGLEWVA 49
>pdb|1IGF|H Chain H, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|2IGF|H Chain H, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|1IGF|J Chain J, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
Length = 221
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G L+ GGS +L + G + +R W + P K + WVA
Sbjct: 3 QLVESGGDLVKPGGSLKLSCAASGFTFSRCAMSWVRQTPEKRLEWVA 49
>pdb|3LRS|H Chain H, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|A Chain A, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|C Chain C, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|E Chain E, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3MME|H Chain H, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|A Chain A, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|C Chain C, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
Length = 238
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G ++ GGS L + G + ++Y W + P K + WVA
Sbjct: 3 QLVESGGGVVQPGGSLRLSCLASGFTFHKYGMHWVRQAPGKGLEWVA 49
>pdb|1QLE|H Chain H, Cryo-structure Of The Paracoccus Denitrificans
Four-subunit Cytochrome C Oxidase In The Completely
Oxidized State Complexed With An Antibody Fv Fragment
Length = 119
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSG 88
G L+ GGS +L + G + + Y W + P K + WVA+ IN+ G
Sbjct: 8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVAS----INNGGG 56
>pdb|1AR1|C Chain C, Structure At 2.7 Angstrom Resolution Of The Paracoccus
Denitrificans Two-Subunit Cytochrome C Oxidase
Complexed With An Antibody Fv Fragment
pdb|1MQK|H Chain H, Crystal Structure Of The Unliganded Fv-Fragment Of The
Anti- Cytochrome C Oxidase Antibody 7e2
pdb|3EHB|C Chain C, A D-Pathway Mutation Decouples The Paracoccus
Denitrificans Cytochrome C Oxidase By Altering The Side
Chain Orientation Of A Distant, Conserved Glutamate
pdb|3HB3|C Chain C, High Resolution Crystal Structure Of Paracoccus
Denitrificans Cytochrome C Oxidase
Length = 127
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSG 88
G L+ GGS +L + G + + Y W + P K + WVA+ IN+ G
Sbjct: 8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVAS----INNGGG 56
>pdb|1H3P|H Chain H, Structural Characterisation Of A Monoclonal Antibody
Specific For The Pres1 Region Of The Hepatitis B Virus
Length = 219
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
Q + G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 3 QLVESGGGLVKPGGSLKLSCAASGFTFSSYAMSWVRQSPEKRLEWVAE 50
>pdb|3NZH|H Chain H, Crystal Structure Of Anti-Emmprin Antibody 5f6 Fab
Length = 226
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN-RLKPINDSS------- 87
G L+ GGS +L + G + + Y W + P K + WVA RLK N ++
Sbjct: 9 GGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAQIRLKSYNYATHYAESVK 68
Query: 88 GLLTINR 94
G TI+R
Sbjct: 69 GRFTISR 75
>pdb|4GLI|A Chain A, Crystal Structure Of Human Smn Yg-Dimer
Length = 401
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 54 GSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWSAS 112
+ EN G +IP + W A R IN +SG T++ T ++M I W S
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITMLISWYMS 377
>pdb|1IFH|H Chain H, A Detailed Analysis Of The Free And Bound Conformation
Of An Antibody: X-Ray Structures Of Anti-Peptide Fab
17(Slash)9 And Three Different Fab-Peptide Complexes
pdb|1HIL|B Chain B, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIL|D Chain D, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIM|L Chain L, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIM|M Chain M, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIN|H Chain H, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
Length = 220
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
Q + G L+ GGS +L + G S + Y W + P K + WVA
Sbjct: 3 QLVESGGDLVKPGGSLKLSCAASGFSFSSYGMSWVRQTPDKRLEWVAT 50
>pdb|1QGC|4 Chain 4, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
Length = 438
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
+ G L+ GGS +L + G NR W + P K + WVA
Sbjct: 223 VESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVA 267
>pdb|1S78|D Chain D, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
pdb|1S78|F Chain F, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
Length = 226
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSG 88
Q + G L+ GGS L + G + Y W + P K + WVA+ +N +SG
Sbjct: 3 QLVESGGGLVQPGGSLRLSCAASGFTFTDYTMDWVRQAPGKGLEWVAD----VNPNSG 56
>pdb|1IGM|H Chain H, Three Dimensional Structure Of An Fv From A Human Igm
Immunoglobulin
Length = 129
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
L G L+ GGS L + G + N +V W + P K + WV+
Sbjct: 5 LESGGNLVQPGGSLRLSCAASGFTFNIFVMSWVRQAPGKGLEWVS 49
>pdb|1L7I|H Chain H, Crystal Structure Of The Anti-Erbb2 Fab2c4
Length = 222
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSG 88
Q + G L+ GGS L + G + Y W + P K + WVA+ +N +SG
Sbjct: 3 QLVESGGGLVQPGGSLRLSCAASGFTFTDYTMDWVRQAPGKGLEWVAD----VNPNSG 56
>pdb|1EJO|H Chain H, Fab Fragment Of Neutralising Monoclonal Antibody 4c4
Complexed With G-H Loop From Fmdv
Length = 220
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 5 VESGGDLVKPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVAT 50
>pdb|3KR3|H Chain H, Crystal Structure Of Igf-Ii Antibody Complex
Length = 251
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q L G L+ GGS L + G + + Y+ W + P K + WV+
Sbjct: 3 QLLESGGGLVQPGGSLRLSCAASGFTFSNYIMWWVRQAPGKGLEWVS 49
>pdb|2YBR|A Chain A, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YBR|D Chain D, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YBR|G Chain G, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YC1|A Chain A, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YC1|D Chain D, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
Length = 117
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPIND----- 85
Q + G L+ GGS L G + + Y W + +P + + WV+ + D
Sbjct: 3 QLVESGGGLVQPGGSLRLSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYAD 62
Query: 86 -SSGLLTINRTGNPVLTSLSM 105
G TI+R SL M
Sbjct: 63 SVKGRFTISRDDAKKTLSLQM 83
>pdb|1OTS|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
And Fab Complex
pdb|1OTS|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
And Fab Complex
pdb|1OTT|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTU|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|2FEC|J Chain J, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FEC|I Chain I, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FED|C Chain C, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FED|E Chain E, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FEE|J Chain J, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|I Chain I, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2EXW|C Chain C, Crystal Structure Of A Ecclc-Fab Complex In The Absence
Of Bound Ions
pdb|2EXW|E Chain E, Crystal Structure Of A Ecclc-Fab Complex In The Absence
Of Bound Ions
pdb|2EXY|C Chain C, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|E Chain E, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EZ0|C Chain C, Crystal Structure Of The S107aE148QY445A MUTANT OF
ECCLC, In Complex With A Fab Fragment
pdb|2EZ0|E Chain E, Crystal Structure Of The S107aE148QY445A MUTANT OF
ECCLC, In Complex With A Fab Fragment
pdb|4FG6|C Chain C, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|E Chain E, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4ENE|C Chain C, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|E Chain E, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 222
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTI 92
L G L+ GGS +L + G +RY W + P K + W+ + P++ TI
Sbjct: 5 LESGGGLVQPGGSLKLSCAASGFDYSRYWMSWVRQAPGKGLKWI-GEINPVSS-----TI 58
Query: 93 NRT 95
N T
Sbjct: 59 NYT 61
>pdb|2H2P|C Chain C, Crystal Structure Of Clc-Ec1 In Complex With Fab
Fragment In Secn-
pdb|2H2P|E Chain E, Crystal Structure Of Clc-Ec1 In Complex With Fab
Fragment In Secn-
pdb|2H2S|C Chain C, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|E Chain E, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2HLF|C Chain C, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|E Chain E, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HT2|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT3|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT4|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HTK|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTL|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2R9H|C Chain C, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|E Chain E, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|3DET|C Chain C, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|E Chain E, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3EJY|C Chain C, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER,
CLC- Ec1
pdb|3EJY|E Chain E, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER,
CLC- Ec1
pdb|3EJZ|C Chain C, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER,
CLC-Ec1
pdb|3EJZ|E Chain E, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER,
CLC-Ec1
Length = 221
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTI 92
L G L+ GGS +L + G +RY W + P K + W+ + P++ TI
Sbjct: 4 LESGGGLVQPGGSLKLSCAASGFDYSRYWMSWVRQAPGKGLKWI-GEINPVSS-----TI 57
Query: 93 NRT 95
N T
Sbjct: 58 NYT 60
>pdb|1SBS|H Chain H, Crystal Structure Of An Anti-Hcg Fab
Length = 222
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN-RLKPINDSS------- 87
G L+ GGS +L + G + + Y W + P K + WVA+ RLK N ++
Sbjct: 8 GGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVADIRLKSNNYATLYAESVK 67
Query: 88 GLLTINR 94
G TI+R
Sbjct: 68 GRFTISR 74
>pdb|1X9Q|A Chain A, 4m5.3 Anti-Fluorescein Single Chain Antibody Fragment
(Scfv)
Length = 268
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN-RLKPIN------DS-S 87
G L+ GG+ +L + G + Y W + P K + WVA R KP N DS
Sbjct: 159 GGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVK 218
Query: 88 GLLTINR 94
G TI+R
Sbjct: 219 GRFTISR 225
>pdb|1AXT|H Chain H, Immune Versus Natural Selection: Antibody Aldolases With
The Rates Of Natural Enzymes
pdb|3FO9|H Chain H, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
pdb|3FO9|B Chain B, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
Length = 218
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN-RLKPINDSS------- 87
G L+ GGS +L G + +R+ W + P K + WVA RLK N ++
Sbjct: 8 GGGLVQPGGSMKLSCVVSGLTFSRFWMSWVRQSPEKGLEWVAEIRLKSDNYATHYAESVK 67
Query: 88 GLLTINR 94
G TI+R
Sbjct: 68 GKFTISR 74
>pdb|3QXT|A Chain A, Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXT|B Chain B, Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXU|A Chain A, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
pdb|3QXU|B Chain B, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
pdb|3QXU|C Chain C, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
pdb|3QXU|D Chain D, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
Length = 126
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA-----NRLKPIND 85
Q + G L+ GGS L + S + W++ P K +VA RL D
Sbjct: 5 QLVESGGGLVQAGGSLRLSCAASRRSSRSWAMAWFRQAPGKEREFVAKISGDGRLTTYGD 64
Query: 86 S-SGLLTINRTGNPVLTSLSM 105
S G TI+R L M
Sbjct: 65 SVKGRFTISRDKGKNTVYLQM 85
>pdb|4AEI|H Chain H, Crystal Structure Of The Aahii-Fab4c1 Complex
pdb|4AEI|I Chain I, Crystal Structure Of The Aahii-Fab4c1 Complex
pdb|4AEI|J Chain J, Crystal Structure Of The Aahii-Fab4c1 Complex
Length = 229
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + + Y W + P K + WVA+
Sbjct: 5 VESGGGLVKPGGSLKLSCAASGFTFSGYYMYWVRQTPEKRLEWVAS 50
>pdb|1DQL|H Chain H, Crystal Structure Of An Unliganded (Native) Fv From A
Human Igm Anti-Peptide Antibody
Length = 123
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G L+ GGS L + G + + Y W + P K + WVA
Sbjct: 3 QLVESGGGLVQPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVA 49
>pdb|1IGT|B Chain B, Structure Of Immunoglobulin
pdb|1IGT|D Chain D, Structure Of Immunoglobulin
Length = 444
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 8 GGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVA 49
>pdb|1BLN|B Chain B, Anti-P-Glycoprotein Fab Mrk-16
pdb|1BLN|D Chain D, Anti-P-Glycoprotein Fab Mrk-16
Length = 218
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 5 VESGGGLVKPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVAT 50
>pdb|3IY5|B Chain B, Variable Domains Of The Mouse Fab (1aif) Fitted Into The
Cryoem Reconstruction Of The Virus-Fab 16 Complex
Length = 122
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN-RLKPIN 84
G L+ GGS +L + G + N Y W + P K + WVA RL N
Sbjct: 8 GGGLVQPGGSMKLSCVASGFTFNNYWMSWVRQSPEKGLEWVAEIRLNSDN 57
>pdb|1H0D|B Chain B, Crystal Structure Of Human Angiogenin In Complex With
Fab Fragment Of Its Monoclonal Antibody Mab 26-2f
Length = 223
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 5 VESGGGLVKPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVAT 50
>pdb|1SEQ|H Chain H, Fab Mnac13
Length = 225
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
+ G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 5 VESGGGLVQPGGSLKLSCAASGFTFSTYTMSWARQTPEKKLEWVA 49
>pdb|2QHR|H Chain H, Crystal Structure Of The 13f6-1-2 Fab Fragment Bound To
Its Ebola Virus Glycoprotein Peptide Epitope
Length = 222
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 3 QVVESGGGLVKPGGSLKLSCAASGFAFSSYDMSWVRQTPEKRLEWVA 49
>pdb|3SOB|H Chain H, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 256
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 20 FSFASDVLTSSQSLSDGNTLISKGGSFELGFFSPG-SSENRYVGIWYKSIPVKTVVWVA 77
FS A++ Q + G L+ GGS L + G + N Y+ W + P K + WV
Sbjct: 15 FSIATNAYAEVQLVESGGGLVQPGGSLRLSCAASGFTFTNSYIH-WVRQAPGKGLEWVG 72
>pdb|1SM3|H Chain H, Crystal Structure Of The Tumor Specific Antibody Sm3
Complex With Its Peptide Epitope
Length = 218
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN-RLKPINDSS------- 87
G L+ GGS +L + G + + Y W + P K + WVA RLK N ++
Sbjct: 8 GGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAEIRLKSNNYATHYAESVK 67
Query: 88 GLLTINR 94
G TI+R
Sbjct: 68 GRFTISR 74
>pdb|2VXS|H Chain H, Structure Of Il-17a In Complex With A Potent, Fully
Human Neutralising Antibody
pdb|2VXS|I Chain I, Structure Of Il-17a In Complex With A Potent, Fully
Human Neutralising Antibody
pdb|2VXS|J Chain J, Structure Of Il-17a In Complex With A Potent, Fully
Human Neutralising Antibody
pdb|2VXS|K Chain K, Structure Of Il-17a In Complex With A Potent, Fully
Human Neutralising Antibody
Length = 225
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q L G L+ GGS L + G + + Y W + P K + WV+
Sbjct: 3 QLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVS 49
>pdb|1LO0|Y Chain Y, Catalytic Retro-Diels-Alderase Transition State Analogue
Complex
pdb|1LO0|H Chain H, Catalytic Retro-Diels-Alderase Transition State Analogue
Complex
pdb|1LO2|Y Chain Y, Retro-Diels-Alderase Catalytic Antibody
pdb|1LO2|H Chain H, Retro-Diels-Alderase Catalytic Antibody
pdb|1LO3|Y Chain Y, Retro-Diels-Alderase Catalytic Antibody: Product
Analogue
pdb|1LO3|H Chain H, Retro-Diels-Alderase Catalytic Antibody: Product
Analogue
Length = 220
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G S Y W + P K + WVA+
Sbjct: 5 VESGGGLVKPGGSLKLSCAASGFSFRNYGMSWVRQTPEKRLEWVAS 50
>pdb|2ZUQ|C Chain C, Crystal Structure Of Dsbb-Fab Complex
pdb|2ZUQ|F Chain F, Crystal Structure Of Dsbb-Fab Complex
pdb|2LTQ|C Chain C, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
pdb|2LTQ|F Chain F, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
Length = 221
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 3 QLVESGGGLVKPGGSLKLSCAASGFAFSSYDMSWVRQTPEKRLEWVA 49
>pdb|1IAI|I Chain I, Idiotype-Anti-Idiotype Fab Complex
pdb|1AIF|H Chain H, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
pdb|1AIF|B Chain B, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
Length = 218
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
G L+ GGS +L + G + N Y W + P K + WVA
Sbjct: 8 GGGLVQPGGSMKLSCVASGFTFNNYWMSWVRQSPEKGLEWVA 49
>pdb|2X1O|A Chain A, Gelsolin Nanobody
pdb|2X1O|B Chain B, Gelsolin Nanobody
Length = 122
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIP------VKTVVWVANRLKPINDSSGL 89
G L+ GGS L + G + Y W++ P V T+VW ++ + + G
Sbjct: 8 GGGLVQAGGSLRLSCAAAGRNLRMYRMGWFRQAPGKEREFVGTMVWSSDTIYYADSVKGR 67
Query: 90 LTINR 94
I+R
Sbjct: 68 FIISR 72
>pdb|3AB0|B Chain B, Crystal Structure Of Complex Of The Bacillus Anthracis
Major Spore Surface Protein Bcla With Scfv Antibody
Fragment
pdb|3AB0|E Chain E, Crystal Structure Of Complex Of The Bacillus Anthracis
Major Spore Surface Protein Bcla With Scfv Antibody
Fragment
Length = 117
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + + Y W + P K + WVA+
Sbjct: 5 VESGGGLVKPGGSLKLSCSASGFTFSSYAMSWVRQTPEKRLEWVAS 50
>pdb|3QOS|H Chain H, Crystal Structure Of Human Germline Antibody 3-23B3
pdb|3QOS|B Chain B, Crystal Structure Of Human Germline Antibody 3-23B3
Length = 228
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q L G L+ GGS L + G + + Y W + P K + WV+
Sbjct: 3 QLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVS 49
>pdb|4FQL|H Chain H, Influenza B Ha Antibody (Fab) Cr8033
Length = 236
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA------NRLKPIN 84
Q + G L+ G S L + G S + Y W + P K + WVA N + +
Sbjct: 3 QLVESGGGLVQPGRSLRLSCAASGFSFDEYTMHWVRQAPGKGLEWVAGINWKGNFMGYAD 62
Query: 85 DSSGLLTINR 94
G TI+R
Sbjct: 63 SVQGRFTISR 72
>pdb|2OR9|H Chain H, The Structure Of The Anti-C-Myc Antibody 9e10 Fab
FragmentEPITOPE PEPTIDE COMPLEX REVEALS A NOVEL BINDING
Mode Dominated By The Heavy Chain Hypervariable Loops
pdb|2OR9|I Chain I, The Structure Of The Anti-C-Myc Antibody 9e10 Fab
FragmentEPITOPE PEPTIDE COMPLEX REVEALS A NOVEL BINDING
Mode Dominated By The Heavy Chain Hypervariable Loops
pdb|2ORB|H Chain H, The Structure Of The Anti-C-Myc Antibody 9e10 Fab
Fragment
pdb|2ORB|I Chain I, The Structure Of The Anti-C-Myc Antibody 9e10 Fab
Fragment
Length = 228
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 5 VESGGDLVKPGGSLKLSCAASGFTFSHYGMSWVRQTPDKRLEWVAT 50
>pdb|2ADG|B Chain B, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425
pdb|2ADI|B Chain B, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425
In Complex With Barium
pdb|2ADJ|B Chain B, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425
In Complex With Calcium
Length = 222
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 3 QLVESGGDLVKPGGSLKLSCAASGFTFSSYGMSWVRQTPDKGLEWVA 49
>pdb|1PZ5|B Chain B, Structural Basis Of Peptide-Carbohydrate Mimicry In An
Antibody Combining Site
Length = 220
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN-RLKPINDSS------- 87
G L+ GGS +L + G + + Y W + P K + WVA RLK N ++
Sbjct: 8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVK 67
Query: 88 GLLTINR 94
G TI+R
Sbjct: 68 GRFTISR 74
>pdb|1M71|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide
pdb|1M7D|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Trisaccharide
pdb|1M7I|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Pentasaccharide
Length = 220
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN-RLKPINDSS------- 87
G L+ GGS +L + G + + Y W + P K + WVA RLK N ++
Sbjct: 8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVK 67
Query: 88 GLLTINR 94
G TI+R
Sbjct: 68 GRFTISR 74
>pdb|3KYM|B Chain B, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|D Chain D, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|F Chain F, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|H Chain H, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|J Chain J, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|L Chain L, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|N Chain N, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|P Chain P, Crystal Structure Of Li33 Igg2 Di-Fab
Length = 227
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q L G L+ GGS L + G + + Y W + P K + WV+
Sbjct: 3 QLLESGGGLVQPGGSLRLSCAASGFTFSIYPMFWVRQAPGKGLEWVS 49
>pdb|4IDL|A Chain A, Low Melting Temperature Anti-cholera Toxin Llama Vhh
Domain
Length = 136
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
G + GGS +L + G++ + WY+ P K WVA+
Sbjct: 10 GGGAVQTGGSLKLTCLASGNTASIRAMGWYRRAPGKQREWVAS 52
>pdb|3FFD|A Chain A, Structure Of Parathyroid Hormone-Related Protein
Complexed To A Neutralizing Monoclonal Antibody
Length = 218
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
Q + G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 3 QLVESGGDLVKPGGSLKLSCAASGFTFSSYGMSWIRQTPDKRLEWVAT 50
>pdb|1KFA|H Chain H, Crystal Structure Of Fab Fragment Complexed With
Gibberellin A4
pdb|1KFA|I Chain I, Crystal Structure Of Fab Fragment Complexed With
Gibberellin A4
Length = 221
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + + Y W + P + + WVA
Sbjct: 5 VESGGGLVKPGGSLKLSCAASGFTFSSYAMSWVRQTPERRLEWVAT 50
>pdb|2GSG|B Chain B, Crystal Structure Of The Fv Fragment Of A Monoclonal
Antibody Specific For Poly-Glutamine
pdb|2GSG|D Chain D, Crystal Structure Of The Fv Fragment Of A Monoclonal
Antibody Specific For Poly-Glutamine
pdb|2OTU|B Chain B, Crystal Structure Of Fv Polyglutamine Complex
pdb|2OTU|D Chain D, Crystal Structure Of Fv Polyglutamine Complex
pdb|2OTU|F Chain F, Crystal Structure Of Fv Polyglutamine Complex
pdb|2OTU|H Chain H, Crystal Structure Of Fv Polyglutamine Complex
pdb|2OTW|B Chain B, Crystal Structure Of Fv Polyglutamine Complex
pdb|2OTW|D Chain D, Crystal Structure Of Fv Polyglutamine Complex
Length = 118
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q G L+ GGS +L + G + Y W + P K + WVA
Sbjct: 3 QLQESGGGLVQPGGSLKLSCAASGFTFRDYYMYWVRQTPEKRLEWVA 49
>pdb|3V6F|A Chain A, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6F|C Chain C, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6F|E Chain E, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6F|H Chain H, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6Z|A Chain A, Crystal Structure Of Hepatitis B Virus E-antigen
pdb|3V6Z|C Chain C, Crystal Structure Of Hepatitis B Virus E-antigen
Length = 224
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
Q + G L+ GGS +L + G + + Y W + P K + WVA
Sbjct: 3 QLVESGGDLVKPGGSLKLSCAASGFTFSSYGMSWVRQTPDKRLEWVAT 50
>pdb|2J4W|H Chain H, Structure Of A Plasmodium Vivax Apical Membrane Antigen
1- Fab F8.12.19 Complex
pdb|2J5L|C Chain C, Structure Of A Plasmodium Falciparum Apical Membrane
Antigen 1-Fab F8.12.19 Complex
Length = 225
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
Q + G L+ GGS +L + G + Y W + P K + WVA
Sbjct: 3 QLVESGGGLVKPGGSLKLSCAASGFIFSDYYMYWVRQTPEKRLEWVAT 50
>pdb|1CFV|H Chain H, Monoclonal Antibody Fragment Fv4155 From E. Coli
pdb|2BFV|H Chain H, Monoclonal Antibody Fragment Fv4155 From E. Coli
pdb|1BFV|H Chain H, Monoclonal Antibody Fragment Fv4155 From E. Coli
Length = 119
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
G L++ GGS L + G + N Y W + P KT+ VA
Sbjct: 8 GGGLVNLGGSMTLSCVASGFTFNTYYMSWVRQTPEKTLELVA 49
>pdb|3QYC|A Chain A, Structure Of A Dimeric Anti-Her2 Single Domain Antibody
pdb|3QYC|B Chain B, Structure Of A Dimeric Anti-Her2 Single Domain Antibody
Length = 146
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G LI GGS L + G + Y W + P K + WV+
Sbjct: 5 QLVESGGGLIKPGGSLRLSCAASGVRLSAYDMAWVRQAPGKGLEWVS 51
>pdb|3KYK|H Chain H, Crystal Structure Of Li33 Igg1 Fab
Length = 227
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q L G L+ GGS L + G + + Y W + P K + WV+
Sbjct: 3 QLLESGGGLVQPGGSLRLSCAASGFTFSIYPMFWVRQAPGKGLEWVS 49
>pdb|2FL5|H Chain H, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|B Chain B, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|D Chain D, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|F Chain F, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
Length = 220
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
Q + G L+ G S +L + G S + Y W + P K + WV N
Sbjct: 3 QLVESGGGLVQPGESLKLSCTASGFSLSNYYMTWVRQAPGKGLEWVTN 50
>pdb|3UO1|H Chain H, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3UYR|H Chain H, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V4U|H Chain H, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V52|H Chain H, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
Length = 216
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 39 LISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
L+ G S +L + G + + Y W + +P K + WVAN
Sbjct: 11 LVQPGSSMKLSCTASGFTFSDYYMAWVRQVPEKGLEWVAN 50
>pdb|3HR5|H Chain H, M1prime Peptide From Ige Bound By Humanized Antibody
47h4 Fab
pdb|3HR5|B Chain B, M1prime Peptide From Ige Bound By Humanized Antibody
47h4 Fab
pdb|3HR5|I Chain I, M1prime Peptide From Ige Bound By Humanized Antibody
47h4 Fab
pdb|3HR5|J Chain J, M1prime Peptide From Ige Bound By Humanized Antibody
47h4 Fab
Length = 226
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
Q + G L+ GGS L + G + + Y W + P K + WVA
Sbjct: 3 QLVESGGGLVQPGGSLRLSCAASGFTFSDYGIAWVRQAPGKGLEWVA 49
>pdb|2FBJ|H Chain H, Refined Crystal Structure Of The Galactan-Binding
Immunoglobulin Fab J539 At 1.95-Angstroms Resolution
Length = 220
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTI 92
L G L+ GGS +L + G ++Y W + P K + W+ I+ SG TI
Sbjct: 5 LESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGE----IHPDSG--TI 58
Query: 93 NRT 95
N T
Sbjct: 59 NYT 61
>pdb|2XT1|B Chain B, Crystal Structure Of The Hiv-1 Capsid Protein C-Terminal
Domain (146-231) In Complex With A Camelid Vhh.
pdb|2XV6|B Chain B, Crystal Structure Of The Hiv-1 Capsid Protein C-Terminal
Domain (146-220) In Complex With A Camelid Vhh.
pdb|2XV6|D Chain D, Crystal Structure Of The Hiv-1 Capsid Protein C-Terminal
Domain (146-220) In Complex With A Camelid Vhh.
pdb|2XXC|B Chain B, Crystal Structure Of A Camelid Vhh Raised Against The
Hiv-1 Capsid Protein C-Terminal Domain.
pdb|2XXM|B Chain B, Crystal Structure Of The Hiv-1 Capsid Protein C-Terminal
Domain In Complex With A Camelid Vhh And The Cai Peptide
Length = 121
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 27 LTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA----NRLKP 82
+ Q + G L+ GGS L + GS V WY+ P K +A +
Sbjct: 1 MAQVQLVESGGGLVQAGGSLRLSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMST 60
Query: 83 INDSS--GLLTINRTGNPVLTSLSM 105
+ D S G TI R + + L M
Sbjct: 61 VYDDSVKGRFTITRDDDKNILYLQM 85
>pdb|1CLZ|H Chain H, Igg Fab (Igg3, Kappa) Fragment (Mbr96) Complexed With
Lewis Y Nonoate Methyl Ester
Length = 218
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
+ G L+ GGS ++ + G + + Y W + P K + WVA
Sbjct: 5 VESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVA 49
>pdb|1ZA3|B Chain B, The Crystal Structure Of The Ysd1 Fab Bound To Dr5
pdb|1ZA3|H Chain H, The Crystal Structure Of The Ysd1 Fab Bound To Dr5
Length = 236
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
Q + G L+ GGS L + G S Y W + P K + WVA+
Sbjct: 3 QLVESGGGLVQPGGSLRLSCAASGFSIYSYSIHWVRQAPGKGLEWVAS 50
>pdb|2GCY|B Chain B, Humanized Antibody C25 Fab Fragment
Length = 218
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 36 GNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA 77
G L+ GGS L + G + + Y W + P K + WVA
Sbjct: 8 GGGLVQPGGSLRLSCAASGFTFSDYYMYWVRQAPGKGLEWVA 49
>pdb|3O6K|H Chain H, Crystal Structure Of Anti-Tat Hiv Fab'11h6h1
pdb|3O6L|H Chain H, Anti-Tat Hiv 11h6h1 Fab' Complexed With A 15-Mer Tat
Peptide
pdb|3O6M|H Chain H, Anti-Tat Hiv 11h6h1 Fab' Complexed With A 9-Mer Tat
Peptide
Length = 219
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 33 LSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVAN 78
+ G L+ GGS +L + G + + Y W+ P K + WVA+
Sbjct: 5 VESGGGLVKPGGSLKLSCAASGFAFSSYDMSWFCQTPEKRLEWVAS 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,647,746
Number of Sequences: 62578
Number of extensions: 406528
Number of successful extensions: 1337
Number of sequences better than 100.0: 200
Number of HSP's better than 100.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 207
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)