Query 036722
Match_columns 311
No_of_seqs 147 out of 1283
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 3.4E-30 7.4E-35 208.3 1.7 111 70-185 1-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 3.3E-26 7.2E-31 185.4 14.5 115 31-153 2-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 7.5E-25 1.6E-29 176.9 13.9 113 31-152 2-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.9 6.9E-25 1.5E-29 176.1 11.3 100 211-311 1-101 (110)
5 smart00108 B_lectin Bulb-type 98.7 8.3E-08 1.8E-12 77.2 7.8 88 89-214 23-112 (114)
6 cd00028 B_lectin Bulb-type man 98.6 1.4E-07 3E-12 76.2 7.6 88 90-215 24-114 (116)
7 PF01453 B_lectin: D-mannose b 98.4 2.9E-06 6.2E-11 68.5 10.5 100 37-154 12-114 (114)
8 PRK11138 outer membrane biogen 80.0 42 0.00092 32.2 13.1 76 69-149 87-186 (394)
9 KOG4649 PQQ (pyrrolo-quinoline 65.8 25 0.00054 32.7 7.0 46 70-115 168-218 (354)
10 PRK11138 outer membrane biogen 56.8 39 0.00085 32.5 7.3 19 94-112 302-321 (394)
11 PF13360 PQQ_2: PQQ-like domai 55.9 24 0.00053 30.6 5.2 19 95-113 2-21 (238)
12 PF01436 NHL: NHL repeat; Int 55.8 15 0.00033 21.5 2.6 21 89-109 6-26 (28)
13 TIGR03300 assembly_YfgL outer 53.7 44 0.00096 31.7 7.0 78 69-150 83-172 (377)
14 PF13360 PQQ_2: PQQ-like domai 53.6 1.2E+02 0.0027 26.0 9.4 79 68-149 53-148 (238)
15 TIGR03300 assembly_YfgL outer 50.5 64 0.0014 30.6 7.5 19 95-113 154-173 (377)
16 KOG0640 mRNA cleavage stimulat 41.3 3.3E+02 0.0072 26.1 11.0 71 75-148 252-333 (430)
17 cd05845 Ig2_L1-CAM_like Second 39.3 48 0.001 25.6 3.8 32 69-101 32-63 (95)
18 cd00216 PQQ_DH Dehydrogenases 38.7 80 0.0017 31.6 6.4 76 69-149 37-136 (488)
19 PF07172 GRP: Glycine rich pro 33.1 30 0.00066 26.8 1.8 11 1-11 1-11 (95)
20 smart00564 PQQ beta-propeller 21.9 1.3E+02 0.0027 17.4 2.8 18 94-111 14-32 (33)
21 cd00216 PQQ_DH Dehydrogenases 21.2 2.4E+02 0.0051 28.2 6.2 67 68-136 373-455 (488)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.96 E-value=3.4e-30 Score=208.28 Aligned_cols=111 Identities=45% Similarity=0.715 Sum_probs=78.4
Q ss_pred CCcEEEEcCCCCCCCC--CCceEEEecCCCeEEecCCCceeEee-ccCcCcCccceeeeeccCCCEEEeeccCCCCceee
Q 036722 70 VKTVVWVANRLKPIND--SSGLLTINRTGNPVLTSLSMGIVWSA-SLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYF 146 (311)
Q Consensus 70 ~~~~vW~Anr~~pv~~--~~~~l~l~~~G~lvl~d~~~~~vWst-~~~~~~~~~~~~~~L~d~GNlVl~~~~~~~~~~~l 146 (311)
++|+||+|||+.|+.. ...+|.|+.||+|+|+|..++++|++ ++.+.......| +|+|+|||||++. .+.+|
T Consensus 1 ~~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~-~L~~~GNlvl~d~----~~~~l 75 (114)
T PF01453_consen 1 PRTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYL-VLQDDGNLVLYDS----SGNVL 75 (114)
T ss_dssp ---------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEE-EEETTSEEEEEET----TSEEE
T ss_pred CcccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEE-EEeCCCCEEEEee----cceEE
Confidence 3689999999999953 24789999999999999999999999 555322135667 9999999999994 67899
Q ss_pred eccccCCccccCCCCeEeeeccCCCeeEEEeeCCCCCCC
Q 036722 147 WQSFDYPSDTLLPGMKLGWDLKTGLERRVTSWKSSNDPS 185 (311)
Q Consensus 147 WqSFd~PtDtlLpgq~L~~~~~tg~~~~L~S~~s~~dps 185 (311)
|||||||+||+||+|+|+.+..+|.+..++||++.+|||
T Consensus 76 W~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 76 WQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp EESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred EeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 999999999999999999876666555699999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.94 E-value=3.3e-26 Score=185.39 Aligned_cols=115 Identities=47% Similarity=0.745 Sum_probs=97.7
Q ss_pred CccCCCCeEEecCCeEEEeEeCCCCCCCeEEEEEEeecCCCcEEEEcCCCCCCCCCCceEEEecCCCeEEecCCCceeEe
Q 036722 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWS 110 (311)
Q Consensus 31 ~~l~~~~~l~S~~g~F~lgF~~~~~~~~~~l~iw~~~~~~~~~vW~Anr~~pv~~~~~~l~l~~~G~lvl~d~~~~~vWs 110 (311)
+.|..|++|+|+++.|++|||.+......+++|||.+.+ .++||.|||+.|. ...++|.|+.||+|+|.|.+|.++|+
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~-~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~g~~vW~ 79 (116)
T cd00028 2 NPLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS-RTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGSGTVVWS 79 (116)
T ss_pred cCcCCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC-CeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCCCcEEEE
Confidence 457789999999999999999986432388899998765 7899999999984 35678999999999999999999999
Q ss_pred eccCcCcCccceeeeeccCCCEEEeeccCCCCceeeeccccCC
Q 036722 111 ASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYP 153 (311)
Q Consensus 111 t~~~~~~~~~~~~~~L~d~GNlVl~~~~~~~~~~~lWqSFd~P 153 (311)
+++.+ .....++ +|+|+|||||++. ++++||||||||
T Consensus 80 S~~~~-~~~~~~~-~L~ddGnlvl~~~----~~~~~W~Sf~~P 116 (116)
T cd00028 80 SNTTR-VNGNYVL-VLLDDGNLVLYDS----DGNFLWQSFDYP 116 (116)
T ss_pred ecccC-CCCceEE-EEeCCCCEEEECC----CCCEEEcCCCCC
Confidence 99873 2234566 9999999999985 578999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.93 E-value=7.5e-25 Score=176.88 Aligned_cols=113 Identities=46% Similarity=0.740 Sum_probs=96.5
Q ss_pred CccCCCCeEEecCCeEEEeEeCCCCCCCeEEEEEEeecCCCcEEEEcCCCCCCCCCCceEEEecCCCeEEecCCCceeEe
Q 036722 31 QSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWS 110 (311)
Q Consensus 31 ~~l~~~~~l~S~~g~F~lgF~~~~~~~~~~l~iw~~~~~~~~~vW~Anr~~pv~~~~~~l~l~~~G~lvl~d~~~~~vWs 110 (311)
+.|..|+.|+|+++.|++|||.+.. ...+++|||...+ .++||.|||+.|+.. .+.|.|+++|+|+|.|.+|.+||+
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~-q~dgnlV~~~~~~-~~~vW~snt~~~~~~-~~~l~l~~dGnLvl~~~~g~~vW~ 78 (114)
T smart00108 2 NTLSSGQTLVSGNSLFELGFFTLIM-QNDYNLILYKSSS-RTVVWVANRDNPVSD-SCTLTLQSDGNLVLYDGDGRVVWS 78 (114)
T ss_pred cccCCCCEEecCCCcEeeeccccCC-CCCEEEEEEECCC-CcEEEECCCCCCCCC-CEEEEEeCCCCEEEEeCCCCEEEE
Confidence 4567899999999999999999864 4578899998765 789999999999864 378999999999999999999999
Q ss_pred eccCcCcCccceeeeeccCCCEEEeeccCCCCceeeeccccC
Q 036722 111 ASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDY 152 (311)
Q Consensus 111 t~~~~~~~~~~~~~~L~d~GNlVl~~~~~~~~~~~lWqSFd~ 152 (311)
+++. .......+ +|+|+|||||++. .+++|||||||
T Consensus 79 S~t~-~~~~~~~~-~L~ddGnlvl~~~----~~~~~W~Sf~~ 114 (114)
T smart00108 79 SNTT-GANGNYVL-VLLDDGNLVIYDS----DGNFLWQSFDY 114 (114)
T ss_pred eccc-CCCCceEE-EEeCCCCEEEECC----CCCEEeCCCCC
Confidence 9886 33334567 9999999999985 56799999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.92 E-value=6.9e-25 Score=176.11 Aligned_cols=100 Identities=46% Similarity=1.014 Sum_probs=94.9
Q ss_pred EEeCCCCCceeecc-cccCCCceEEEEEEcCCeeEEEEEecCCceeEEEEEecCCCeEEEEEEeCCCCceEEEEeecCCC
Q 036722 211 YRTGPWNGVTFSAS-SIKPNPIFNSSFVSNEDELYYTYILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPRDQ 289 (311)
Q Consensus 211 W~sg~w~g~~f~g~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~s~~~rl~Ld~dG~~l~~y~w~~~~~~W~~~w~~p~d~ 289 (311)
||+|+|||..|+|+ +|.....+.+.|+.+++|++++|...+.+.++|++||++| ++++|.|++..+.|.+.|.+|.|+
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G-~l~~~~w~~~~~~W~~~~~~p~d~ 79 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDG-QLQRYIWNESTQSWSVFWSAPKDQ 79 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeee-EEEEEEEecCCCcEEEEEEecccC
Confidence 89999999999999 9987788999999999999999999888899999999999 999999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCCCC
Q 036722 290 CDTYNLCGDYGICSISKSPVCQ 311 (311)
Q Consensus 290 Cd~yg~CG~~g~C~~~~~~~C~ 311 (311)
||+|+.||+||+|+.+..|.|+
T Consensus 80 Cd~y~~CG~~g~C~~~~~~~C~ 101 (110)
T PF00954_consen 80 CDVYGFCGPNGICNSNNSPKCS 101 (110)
T ss_pred CCCccccCCccEeCCCCCCceE
Confidence 9999999999999888888885
No 5
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.67 E-value=8.3e-08 Score=77.20 Aligned_cols=88 Identities=20% Similarity=0.349 Sum_probs=62.2
Q ss_pred eEEEecCCCeEEecCC-CceeEeeccCcCcCccceeeeeccCCCEEEeeccCCCCceeeeccccCCccccCCCCeEeeec
Q 036722 89 LLTINRTGNPVLTSLS-MGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDL 167 (311)
Q Consensus 89 ~l~l~~~G~lvl~d~~-~~~vWst~~~~~~~~~~~~~~L~d~GNlVl~~~~~~~~~~~lWqSFd~PtDtlLpgq~L~~~~ 167 (311)
++.++.||++|+.+.. +.+||++++..+......+ .|+++|||||++. ++.++|+|-.
T Consensus 23 ~~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l-~l~~dGnLvl~~~----~g~~vW~S~t---------------- 81 (114)
T smart00108 23 TLIMQNDYNLILYKSSSRTVVWVANRDNPVSDSCTL-TLQSDGNLVLYDG----DGRVVWSSNT---------------- 81 (114)
T ss_pred ccCCCCCEEEEEEECCCCcEEEECCCCCCCCCCEEE-EEeCCCCEEEEeC----CCCEEEEecc----------------
Confidence 4556789999999765 5799999986222223556 9999999999984 4678999821
Q ss_pred cCCCeeEEEeeCCCCCCCCceEEEEEecCCCceeEEecC-CeeEEEeC
Q 036722 168 KTGLERRVTSWKSSNDPSPGDLIWKIERQGNPELVMWKG-STKFYRTG 214 (311)
Q Consensus 168 ~tg~~~~L~S~~s~~dps~G~y~l~~~~~~~~~l~l~~~-~~~YW~sg 214 (311)
....+.|.+.|+++|... +++. .++.|.+.
T Consensus 82 ---------------~~~~~~~~~~L~ddGnlv--l~~~~~~~~W~Sf 112 (114)
T smart00108 82 ---------------TGANGNYVLVLLDDGNLV--IYDSDGNFLWQSF 112 (114)
T ss_pred ---------------cCCCCceEEEEeCCCCEE--EECCCCCEEeCCC
Confidence 013466889999999854 4543 46778753
No 6
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.61 E-value=1.4e-07 Score=76.17 Aligned_cols=88 Identities=19% Similarity=0.309 Sum_probs=62.1
Q ss_pred EEEec-CCCeEEecCC-CceeEeeccCcCcCccceeeeeccCCCEEEeeccCCCCceeeeccccCCccccCCCCeEeeec
Q 036722 90 LTINR-TGNPVLTSLS-MGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDL 167 (311)
Q Consensus 90 l~l~~-~G~lvl~d~~-~~~vWst~~~~~~~~~~~~~~L~d~GNlVl~~~~~~~~~~~lWqSFd~PtDtlLpgq~L~~~~ 167 (311)
+..+. +|+||+.+.. +.+||++++.........+ .|+++|||||++. ++.++|+|-..
T Consensus 24 ~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~~l-~l~~dGnLvl~~~----~g~~vW~S~~~--------------- 83 (116)
T cd00028 24 LIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSCTL-TLQSDGNLVIYDG----SGTVVWSSNTT--------------- 83 (116)
T ss_pred CCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCEEE-EEecCCCeEEEcC----CCcEEEEeccc---------------
Confidence 44565 8999999764 5799999986221223556 9999999999984 56789998320
Q ss_pred cCCCeeEEEeeCCCCCCCCceEEEEEecCCCceeEEec-CCeeEEEeCC
Q 036722 168 KTGLERRVTSWKSSNDPSPGDLIWKIERQGNPELVMWK-GSTKFYRTGP 215 (311)
Q Consensus 168 ~tg~~~~L~S~~s~~dps~G~y~l~~~~~~~~~l~l~~-~~~~YW~sg~ 215 (311)
. ..+.+.+.|+++|... +++ ...+.|.+..
T Consensus 84 ---------------~-~~~~~~~~L~ddGnlv--l~~~~~~~~W~Sf~ 114 (116)
T cd00028 84 ---------------R-VNGNYVLVLLDDGNLV--LYDSDGNFLWQSFD 114 (116)
T ss_pred ---------------C-CCCceEEEEeCCCCEE--EECCCCCEEEcCCC
Confidence 0 2466889999999854 454 3467887653
No 7
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.42 E-value=2.9e-06 Score=68.47 Aligned_cols=100 Identities=25% Similarity=0.364 Sum_probs=67.4
Q ss_pred CeEEecCCeEEEeEeCCCCCCCeEEEEEEeecCCCcEEEEc-CCCCCCCCCCceEEEecCCCeEEecCCCceeEeeccCc
Q 036722 37 NTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVA-NRLKPINDSSGLLTINRTGNPVLTSLSMGIVWSASLSK 115 (311)
Q Consensus 37 ~~l~S~~g~F~lgF~~~~~~~~~~l~iw~~~~~~~~~vW~A-nr~~pv~~~~~~l~l~~~G~lvl~d~~~~~vWst~~~~ 115 (311)
+.+.+.+|.+.|-|..+++ |.| |. ...+++|.. +...... ..+.+.|+++|||||.|..+.++|++...
T Consensus 12 ~p~~~~s~~~~L~l~~dGn-----Lvl-~~--~~~~~iWss~~t~~~~~-~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~- 81 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDGN-----LVL-YD--SNGSVIWSSNNTSGRGN-SGCYLVLQDDGNLVLYDSSGNVLWQSFDY- 81 (114)
T ss_dssp EEEEECETTEEEEEETTSE-----EEE-EE--TTTEEEEE--S-TTSS--SSEEEEEETTSEEEEEETTSEEEEESTTS-
T ss_pred cccccccccccceECCCCe-----EEE-Ec--CCCCEEEEecccCCccc-cCeEEEEeCCCCEEEEeecceEEEeecCC-
Confidence 4566655999999998764 433 43 246789999 5444432 35789999999999999999999998543
Q ss_pred CcCccceeeeecc--CCCEEEeeccCCCCceeeeccccCCc
Q 036722 116 EVQQTPVILQLLD--SGNLILRGEQDGDSENYFWQSFDYPS 154 (311)
Q Consensus 116 ~~~~~~~~~~L~d--~GNlVl~~~~~~~~~~~lWqSFd~Pt 154 (311)
+ ....+ ..++ .||++ +.. ...+.|.|=+.|+
T Consensus 82 p--tdt~L-~~q~l~~~~~~-~~~----~~~~sw~s~~dps 114 (114)
T PF01453_consen 82 P--TDTLL-PGQKLGDGNVT-GKN----DSLTSWSSNTDPS 114 (114)
T ss_dssp S--S-EEE-EEET--TSEEE-EES----TSSEEEESS----
T ss_pred C--ccEEE-eccCcccCCCc-ccc----ceEEeECCCCCCC
Confidence 2 23555 7777 89988 652 3568999877763
No 8
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=80.03 E-value=42 Score=32.24 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=45.4
Q ss_pred CCCcEEEEcCCCC----------------CCCCCCceEEEe-cCCCeEEecC-CCceeEeeccCcCcCc------cceee
Q 036722 69 PVKTVVWVANRLK----------------PINDSSGLLTIN-RTGNPVLTSL-SMGIVWSASLSKEVQQ------TPVIL 124 (311)
Q Consensus 69 ~~~~~vW~Anr~~----------------pv~~~~~~l~l~-~~G~lvl~d~-~~~~vWst~~~~~~~~------~~~~~ 124 (311)
....++|..+-.. |+.. ...+.+. .+|.|+-+|. +|.++|+....+.... +.+.
T Consensus 87 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~- 164 (394)
T PRK11138 87 DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVL- 164 (394)
T ss_pred CCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEE-
Confidence 4577899865432 2221 2334443 5688888886 6999999876421111 1112
Q ss_pred eeccCCCEEEeeccCCCCceeeecc
Q 036722 125 QLLDSGNLILRGEQDGDSENYFWQS 149 (311)
Q Consensus 125 ~L~d~GNlVl~~~~~~~~~~~lWqS 149 (311)
.-..+|.|+-.|. .+++++|+-
T Consensus 165 v~~~~g~l~ald~---~tG~~~W~~ 186 (394)
T PRK11138 165 VHTSNGMLQALNE---SDGAVKWTV 186 (394)
T ss_pred EECCCCEEEEEEc---cCCCEeeee
Confidence 2345667777773 578999984
No 9
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.83 E-value=25 Score=32.75 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=34.9
Q ss_pred CCcEEEEcCCCCCCCCC----CceEEE-ecCCCeEEecCCCceeEeeccCc
Q 036722 70 VKTVVWVANRLKPINDS----SGLLTI-NRTGNPVLTSLSMGIVWSASLSK 115 (311)
Q Consensus 70 ~~~~vW~Anr~~pv~~~----~~~l~l-~~~G~lvl~d~~~~~vWst~~~~ 115 (311)
+.+..|.|.|..|+..+ +....+ +-||+|.-.|+.|+.||.-.+.|
T Consensus 168 ~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 168 SSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred CcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 45889999999999754 122333 47899999999999999776653
No 10
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=56.79 E-value=39 Score=32.46 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=9.4
Q ss_pred cCCCeEEecC-CCceeEeec
Q 036722 94 RTGNPVLTSL-SMGIVWSAS 112 (311)
Q Consensus 94 ~~G~lvl~d~-~~~~vWst~ 112 (311)
.+|.|+..|. +|.++|+.+
T Consensus 302 ~~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 302 QNDRVYALDTRGGVELWSQS 321 (394)
T ss_pred CCCeEEEEECCCCcEEEccc
Confidence 3455555554 344556543
No 11
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=55.85 E-value=24 Score=30.62 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=12.6
Q ss_pred CCCeEEecC-CCceeEeecc
Q 036722 95 TGNPVLTSL-SMGIVWSASL 113 (311)
Q Consensus 95 ~G~lvl~d~-~~~~vWst~~ 113 (311)
+|.|...|. +|..+|+.+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~ 21 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL 21 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEEC
Confidence 466666676 6777777654
No 12
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=55.81 E-value=15 Score=21.48 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=15.4
Q ss_pred eEEEecCCCeEEecCCCceeE
Q 036722 89 LLTINRTGNPVLTSLSMGIVW 109 (311)
Q Consensus 89 ~l~l~~~G~lvl~d~~~~~vW 109 (311)
-+.++.+|++++.|..+..||
T Consensus 6 gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEE
T ss_pred EEEEeCCCCEEEEECCCCEEE
Confidence 367778888888887666555
No 13
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=53.71 E-value=44 Score=31.68 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=43.2
Q ss_pred CCCcEEEEcCCCC-----CCCCCCceEEE-ecCCCeEEecC-CCceeEeeccCcCcCccceee-----eeccCCCEEEee
Q 036722 69 PVKTVVWVANRLK-----PINDSSGLLTI-NRTGNPVLTSL-SMGIVWSASLSKEVQQTPVIL-----QLLDSGNLILRG 136 (311)
Q Consensus 69 ~~~~~vW~Anr~~-----pv~~~~~~l~l-~~~G~lvl~d~-~~~~vWst~~~~~~~~~~~~~-----~L~d~GNlVl~~ 136 (311)
....++|..+-.. |+.+ ...+.+ +.+|.|+.+|. +|.++|+....+.....+... .-..+|.|+..|
T Consensus 83 ~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d 161 (377)
T TIGR03300 83 ETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALD 161 (377)
T ss_pred cCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEE
Confidence 4577899765443 3222 234444 45788888886 688999877652111111100 112334444444
Q ss_pred ccCCCCceeeeccc
Q 036722 137 EQDGDSENYFWQSF 150 (311)
Q Consensus 137 ~~~~~~~~~lWqSF 150 (311)
..+++++|+-=
T Consensus 162 ---~~tG~~~W~~~ 172 (377)
T TIGR03300 162 ---AATGERLWTYS 172 (377)
T ss_pred ---cCCCceeeEEc
Confidence 67788999863
No 14
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=53.62 E-value=1.2e+02 Score=26.03 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=44.5
Q ss_pred cCCCcEEEEcCCCCCCCC-----CCceEEEecCCCeEEec-CCCceeEee-ccCc---C--cC-----ccceeeeeccCC
Q 036722 68 IPVKTVVWVANRLKPIND-----SSGLLTINRTGNPVLTS-LSMGIVWSA-SLSK---E--VQ-----QTPVILQLLDSG 130 (311)
Q Consensus 68 ~~~~~~vW~Anr~~pv~~-----~~~~l~l~~~G~lvl~d-~~~~~vWst-~~~~---~--~~-----~~~~~~~L~d~G 130 (311)
.....++|...-..++.. .+..+....+|.|+..| .+|.++|.. .... . .. .+..+.....+|
T Consensus 53 ~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 53 AKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp TTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred CCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence 346788999876554322 22234445567788888 689999984 3210 0 00 011110223377
Q ss_pred CEEEeeccCCCCceeeecc
Q 036722 131 NLILRGEQDGDSENYFWQS 149 (311)
Q Consensus 131 NlVl~~~~~~~~~~~lWqS 149 (311)
.|+..|. .+++++|+-
T Consensus 133 ~l~~~d~---~tG~~~w~~ 148 (238)
T PF13360_consen 133 KLVALDP---KTGKLLWKY 148 (238)
T ss_dssp EEEEEET---TTTEEEEEE
T ss_pred cEEEEec---CCCcEEEEe
Confidence 7777773 467888874
No 15
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=50.53 E-value=64 Score=30.58 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=8.7
Q ss_pred CCCeEEecC-CCceeEeecc
Q 036722 95 TGNPVLTSL-SMGIVWSASL 113 (311)
Q Consensus 95 ~G~lvl~d~-~~~~vWst~~ 113 (311)
+|.|+..|. +|.++|....
T Consensus 154 ~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 154 DGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CCeEEEEEcCCCceeeEEcc
Confidence 444444443 3445554443
No 16
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=41.27 E-value=3.3e+02 Score=26.12 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=43.3
Q ss_pred EEcCCCCCCCCCCceEEEecCCCeEEecC-CCc-eeEee--cc----CcC---cCccceeeeeccCCCEEEeeccCCCCc
Q 036722 75 WVANRLKPINDSSGLLTINRTGNPVLTSL-SMG-IVWSA--SL----SKE---VQQTPVILQLLDSGNLILRGEQDGDSE 143 (311)
Q Consensus 75 W~Anr~~pv~~~~~~l~l~~~G~lvl~d~-~~~-~vWst--~~----~~~---~~~~~~~~~L~d~GNlVl~~~~~~~~~ 143 (311)
=.||.+....+.-..+.....|+|+++.+ +|. -+|.- +. .++ .+....| ++..+|..+|..+ .++-
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa-~Ftkn~kyiLsSG--~DS~ 328 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA-VFTKNGKYILSSG--KDST 328 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE-EEccCCeEEeecC--Ccce
Confidence 34676666554444677788899998865 454 47842 11 001 1113456 9999999999874 2223
Q ss_pred eeeec
Q 036722 144 NYFWQ 148 (311)
Q Consensus 144 ~~lWq 148 (311)
.-||+
T Consensus 329 vkLWE 333 (430)
T KOG0640|consen 329 VKLWE 333 (430)
T ss_pred eeeee
Confidence 35887
No 17
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=39.26 E-value=48 Score=25.62 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=20.0
Q ss_pred CCCcEEEEcCCCCCCCCCCceEEEecCCCeEEe
Q 036722 69 PVKTVVWVANRLKPINDSSGLLTINRTGNPVLT 101 (311)
Q Consensus 69 ~~~~~vW~Anr~~pv~~~~~~l~l~~~G~lvl~ 101 (311)
|..++.|+-+....+. ...++.+..+|+|.+.
T Consensus 32 P~P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs 63 (95)
T cd05845 32 VPLRIYWMNSDLLHIT-QDERVSMGQNGNLYFA 63 (95)
T ss_pred CCCEEEEECCCCcccc-ccccEEECCCceEEEE
Confidence 4567778844433343 3456777777888774
No 18
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=38.70 E-value=80 Score=31.57 Aligned_cols=76 Identities=12% Similarity=0.158 Sum_probs=44.1
Q ss_pred CCCcEEEEcCCC-------CCCCCCCceEEEe-cCCCeEEecC-CCceeEeeccCcC------c-Cc--------cceee
Q 036722 69 PVKTVVWVANRL-------KPINDSSGLLTIN-RTGNPVLTSL-SMGIVWSASLSKE------V-QQ--------TPVIL 124 (311)
Q Consensus 69 ~~~~~vW~Anr~-------~pv~~~~~~l~l~-~~G~lvl~d~-~~~~vWst~~~~~------~-~~--------~~~~~ 124 (311)
....++|..+-. .|+.. ..++.+. .+|.|+-+|. .|.++|+...... . .. ..+.
T Consensus 37 ~~~~~~W~~~~~~~~~~~~sPvv~-~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~- 114 (488)
T cd00216 37 KKLKVAWTFSTGDERGQEGTPLVV-DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVF- 114 (488)
T ss_pred hcceeeEEEECCCCCCcccCCEEE-CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEE-
Confidence 345677876543 35543 2344444 5799988886 6889998765311 0 00 1111
Q ss_pred eeccCCCEEEeeccCCCCceeeecc
Q 036722 125 QLLDSGNLILRGEQDGDSENYFWQS 149 (311)
Q Consensus 125 ~L~d~GNlVl~~~~~~~~~~~lWqS 149 (311)
.-..+|.++-.|. .+++++|+-
T Consensus 115 v~~~~g~v~AlD~---~TG~~~W~~ 136 (488)
T cd00216 115 FGTFDGRLVALDA---ETGKQVWKF 136 (488)
T ss_pred EecCCCeEEEEEC---CCCCEeeee
Confidence 1124677777773 578999983
No 19
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=33.13 E-value=30 Score=26.83 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=5.5
Q ss_pred CchhhhHHHHH
Q 036722 1 MDALSLLLICC 11 (311)
Q Consensus 1 ~~~~~~~~~~~ 11 (311)
|.+...+|+.+
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 66555444433
No 20
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=21.85 E-value=1.3e+02 Score=17.44 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=10.6
Q ss_pred cCCCeEEecC-CCceeEee
Q 036722 94 RTGNPVLTSL-SMGIVWSA 111 (311)
Q Consensus 94 ~~G~lvl~d~-~~~~vWst 111 (311)
.+|.|+-.|. +|.++|..
T Consensus 14 ~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 14 TDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCCEEEEEEcccCcEEEEc
Confidence 3466666665 56667753
No 21
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.15 E-value=2.4e+02 Score=28.21 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=39.2
Q ss_pred cCCCcEEEEcCCC---------CCC-----CCCCceEEE-ecCCCeEEecC-CCceeEeeccCcCcCccceeeeeccCCC
Q 036722 68 IPVKTVVWVANRL---------KPI-----NDSSGLLTI-NRTGNPVLTSL-SMGIVWSASLSKEVQQTPVILQLLDSGN 131 (311)
Q Consensus 68 ~~~~~~vW~Anr~---------~pv-----~~~~~~l~l-~~~G~lvl~d~-~~~~vWst~~~~~~~~~~~~~~L~d~GN 131 (311)
.....++|..... .|. .-....|.+ +.+|.|+.+|. +|+++|+.+..+.....+ + ....+|.
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P-~-~~~~~g~ 450 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATP-M-TYEVNGK 450 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcC-E-EEEeCCE
Confidence 3467889987644 121 112234444 56899998886 688999987642211122 2 3344678
Q ss_pred EEEee
Q 036722 132 LILRG 136 (311)
Q Consensus 132 lVl~~ 136 (311)
+++-.
T Consensus 451 ~yv~~ 455 (488)
T cd00216 451 QYVGV 455 (488)
T ss_pred EEEEE
Confidence 77765
Done!