BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036723
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NUQ|A Chain A, Structure Of A Putative Nucleotide Phosphatase From
Saccharomyces Cerevisiae
Length = 282
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 102/232 (43%), Gaps = 47/232 (20%)
Query: 12 NQKYDCLLFDLDDTIYPLTSGLSKEVTKNIQEYMLQKLCIEEAKVPELCVSLYKFYGTTL 71
N FD+D+ +Y ++ + + ++I + L + L S YK YG +
Sbjct: 54 NPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAI 113
Query: 72 AGLRAIGYQFDCDDFHSYVHGRLPYM-MLKPDPVLRNLLLSL----PIRKV-IFTNADKT 125
GL + ++ + +++ V LP +LKPD LRN+LL L I K+ +FTNA K
Sbjct: 114 RGL-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKN 172
Query: 126 HAARVLSRLGLEDCFERIISFETLNSTDKGTVLVDQDASESERPTELFDIDDYCSRPNAD 185
HA R L LG+ D LFD YC D
Sbjct: 173 HAIRCLRLLGIAD---------------------------------LFDGLTYCDYSRTD 199
Query: 186 LELPRTPVVCKPFEEAFEQVFKIANINPRKTIFF-DDSIRNLETGKRLGLHT 236
+VCKP +AFE+ K + + + +F DDS +N+ETG +LG+ T
Sbjct: 200 ------TLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKT 245
>pdb|3ONN|A Chain A, Crystal Structure Of 5'-Nucleotidase Sdt1 From
Saccharomyces Cerevisiae
Length = 263
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 102/232 (43%), Gaps = 47/232 (20%)
Query: 12 NQKYDCLLFDLDDTIYPLTSGLSKEVTKNIQEYMLQKLCIEEAKVPELCVSLYKFYGTTL 71
N FD+D+ +Y ++ + + ++I + L + L S YK YG +
Sbjct: 27 NPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAI 86
Query: 72 AGLRAIGYQFDCDDFHSYVHGRLPYM-MLKPDPVLRNLLLSL----PIRKV-IFTNADKT 125
GL + ++ + +++ V LP +LKPD LRN+LL L I K+ +FTNA K
Sbjct: 87 RGL-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKN 145
Query: 126 HAARVLSRLGLEDCFERIISFETLNSTDKGTVLVDQDASESERPTELFDIDDYCSRPNAD 185
HA R L LG+ D LFD YC D
Sbjct: 146 HAIRCLRLLGIAD---------------------------------LFDGLTYCDYSRTD 172
Query: 186 LELPRTPVVCKPFEEAFEQVFKIANINPRKTIFF-DDSIRNLETGKRLGLHT 236
+VCKP +AFE+ K + + + +F DDS +N+ETG +LG+ T
Sbjct: 173 ------TLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKT 218
>pdb|3OPX|A Chain A, Crystal Structure Of Pyrimidine 5 -Nucleotidase Sdt1 From
Saccharomyces Cerevisiae Complexed With Uridine
5'-Monophosphate
Length = 263
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 101/232 (43%), Gaps = 47/232 (20%)
Query: 12 NQKYDCLLFDLDDTIYPLTSGLSKEVTKNIQEYMLQKLCIEEAKVPELCVSLYKFYGTTL 71
N F +D+ +Y ++ + + ++I + L + L S YK YG +
Sbjct: 27 NPNLKVFFFAIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAI 86
Query: 72 AGLRAIGYQFDCDDFHSYVHGRLPYM-MLKPDPVLRNLLLSL----PIRKV-IFTNADKT 125
GL + ++ + +++ V LP +LKPD LRN+LL L I K+ +FTNA K
Sbjct: 87 RGL-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKN 145
Query: 126 HAARVLSRLGLEDCFERIISFETLNSTDKGTVLVDQDASESERPTELFDIDDYCSRPNAD 185
HA R L LG+ D LFD YC D
Sbjct: 146 HAIRCLRLLGIAD---------------------------------LFDGLTYCDYSRTD 172
Query: 186 LELPRTPVVCKPFEEAFEQVFKIANINPRKTIFF-DDSIRNLETGKRLGLHT 236
+VCKP +AFE+ K + + + +F DDS +N+ETG +LG+ T
Sbjct: 173 ------TLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKT 218
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 169 PTELFDIDDYCSRPNADLELPRTPVVCKPFEEAFEQVFKIANINPRKTIFFDDSIRNLET 228
P F ++DY + E+ + KP E F+ V + A I+P++T F DDS N +
Sbjct: 150 PYRTFKVEDYFEKTYLSYEMK----MAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKV 205
Query: 229 GKRLGLHT 236
+ LG+ T
Sbjct: 206 AQELGIST 213
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 169 PTELFDIDDYCSRPNADLELPRTPVVCKPFEEAFEQVFKIANINPRKTIFFDDSIRNLET 228
P F ++DY + E+ + KP E F+ V + A I+P++T F DDS N +
Sbjct: 150 PYRTFKVEDYFEKTYLSYEMK----MAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKV 205
Query: 229 GKRLGLHT 236
+ LG+ T
Sbjct: 206 AQELGIST 213
>pdb|2I6X|A Chain A, The Structure Of A Predicted Had-like Family Hydrolase
From Porphyromonas Gingivalis
Length = 211
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 196 KPFEEAFEQVFKIANINPRKTIFFDDSIRNLETGKRLGLHT 236
KP E+ F + + P +T+F DD N+ T +RLG HT
Sbjct: 150 KPNEDIFLEXIADSGXKPEETLFIDDGPANVATAERLGFHT 190
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 196 KPFEEAFEQVFKIANINPRKTIFFDDSIRNLETGKRLGLHTVWV 239
KP ++ V + +P T+FFDD+ N+E +LG+ ++ V
Sbjct: 148 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 191
>pdb|3CNH|A Chain A, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
pdb|3CNH|B Chain B, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
Length = 200
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 194 VCKPFEEAFEQVFKIANINPRKTIFFDDSIRNLETGKRLGLHTV 237
V KP + +A + P + + DD ++N++ + +G H V
Sbjct: 139 VXKPNPAXYRLGLTLAQVRPEEAVXVDDRLQNVQAARAVGXHAV 182
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 196 KPFEEAFEQVFKIANINPRKTIFFDDSIRNLETGKRLGLHTVWVGTSH 243
KP E + V + N+ P K + F+DS +E K G+ ++ G H
Sbjct: 140 KPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIERIY-GVVH 186
>pdb|3MC1|A Chain A, Crystal Structure Of A Predicted Phosphatase From
Clostridium Acetobutylicum
pdb|3MC1|B Chain B, Crystal Structure Of A Predicted Phosphatase From
Clostridium Acetobutylicum
Length = 226
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 15 YDCLLFDLDDTIYPLTSGLSKEVTKNIQEYMLQKLCIEEAKVPELCVSLYKFYGTTLAGL 74
Y+ +LFDLD T+ G++K V +Y L K I+ V +L SL KF G L
Sbjct: 4 YNYVLFDLDGTLTDSAEGITKSV-----KYSLNKFDIQ---VEDLS-SLNKFVGPPLKTS 54
Query: 75 RAIGYQFD 82
Y FD
Sbjct: 55 FXEYYNFD 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,629,657
Number of Sequences: 62578
Number of extensions: 349560
Number of successful extensions: 888
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 27
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)