Query 036725
Match_columns 392
No_of_seqs 525 out of 3470
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 7.6E-78 1.7E-82 597.6 18.8 290 93-391 1-298 (506)
2 PRK11088 rrmA 23S rRNA methylt 99.7 6.9E-17 1.5E-21 155.0 12.9 161 116-312 19-186 (272)
3 COG2226 UbiE Methylase involve 99.7 2.2E-16 4.7E-21 147.5 11.7 115 189-307 37-156 (238)
4 PF01209 Ubie_methyltran: ubiE 99.6 9.2E-16 2E-20 143.9 9.3 111 193-307 37-153 (233)
5 PF08241 Methyltransf_11: Meth 99.6 4.1E-15 8.9E-20 118.1 7.8 90 210-305 1-95 (95)
6 PLN02233 ubiquinone biosynthes 99.6 2.7E-14 5.8E-19 136.3 13.2 110 195-307 65-182 (261)
7 PLN02244 tocopherol O-methyltr 99.5 5.4E-14 1.2E-18 139.2 13.4 117 189-307 99-223 (340)
8 COG2227 UbiG 2-polyprenyl-3-me 99.5 4E-14 8.6E-19 130.6 7.1 105 207-313 61-167 (243)
9 PLN02396 hexaprenyldihydroxybe 99.5 2.9E-13 6.2E-18 132.6 13.6 103 207-311 133-239 (322)
10 PTZ00098 phosphoethanolamine N 99.5 1.3E-13 2.9E-18 131.7 10.7 112 190-308 39-157 (263)
11 PRK10258 biotin biosynthesis p 99.5 2.9E-13 6.3E-18 128.2 12.4 113 190-310 29-143 (251)
12 PF13489 Methyltransf_23: Meth 99.4 1.7E-13 3.6E-18 119.8 7.5 93 207-310 24-118 (161)
13 PF12847 Methyltransf_18: Meth 99.4 7.8E-13 1.7E-17 109.0 10.4 101 207-307 3-111 (112)
14 TIGR02752 MenG_heptapren 2-hep 99.4 1.5E-12 3.3E-17 121.5 13.6 116 189-308 31-152 (231)
15 KOG1540 Ubiquinone biosynthesi 99.4 1.2E-12 2.6E-17 121.1 11.5 112 191-306 88-213 (296)
16 PRK11207 tellurite resistance 99.4 1.6E-12 3.4E-17 119.0 11.7 97 208-306 33-133 (197)
17 PRK11036 putative S-adenosyl-L 99.4 1E-12 2.2E-17 124.9 10.7 102 207-310 46-152 (255)
18 PRK14103 trans-aconitate 2-met 99.4 1.7E-12 3.6E-17 123.4 11.4 106 192-309 18-128 (255)
19 PRK15068 tRNA mo(5)U34 methylt 99.4 2.4E-12 5.2E-17 126.5 12.6 111 192-307 111-226 (322)
20 TIGR00477 tehB tellurite resis 99.4 3.3E-12 7.1E-17 116.7 11.4 97 208-306 33-132 (195)
21 PF13847 Methyltransf_31: Meth 99.4 2.3E-12 5.1E-17 112.7 9.9 100 207-309 5-112 (152)
22 TIGR02072 BioC biotin biosynth 99.4 6.7E-12 1.4E-16 116.8 13.2 98 207-310 36-138 (240)
23 PF07021 MetW: Methionine bios 99.4 2.9E-12 6.3E-17 115.1 10.2 107 193-311 5-113 (193)
24 TIGR00452 methyltransferase, p 99.4 6.5E-12 1.4E-16 122.6 12.6 110 192-307 110-225 (314)
25 PRK05785 hypothetical protein; 99.4 4.9E-12 1.1E-16 118.3 11.2 86 207-301 53-141 (226)
26 TIGR00740 methyltransferase, p 99.3 8.4E-12 1.8E-16 117.4 12.6 99 207-308 55-162 (239)
27 PRK08317 hypothetical protein; 99.3 1.1E-11 2.4E-16 115.1 13.1 113 189-309 5-126 (241)
28 PF02353 CMAS: Mycolic acid cy 99.3 3.8E-12 8.2E-17 122.1 9.9 120 177-306 36-165 (273)
29 PRK01683 trans-aconitate 2-met 99.3 6.2E-12 1.3E-16 119.5 11.3 109 191-309 19-132 (258)
30 PLN02336 phosphoethanolamine N 99.3 9.2E-12 2E-16 128.6 13.3 112 192-308 255-370 (475)
31 PF08242 Methyltransf_12: Meth 99.3 5.3E-13 1.1E-17 108.0 2.7 93 210-303 1-99 (99)
32 PRK00107 gidB 16S rRNA methylt 99.3 3.3E-11 7.1E-16 109.4 14.5 114 207-345 47-165 (187)
33 PRK15451 tRNA cmo(5)U34 methyl 99.3 5.2E-12 1.1E-16 119.6 9.5 99 207-307 58-164 (247)
34 COG2230 Cfa Cyclopropane fatty 99.3 9.8E-12 2.1E-16 118.4 11.2 127 176-307 45-176 (283)
35 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.6E-11 3.5E-16 120.8 12.5 113 189-308 98-216 (340)
36 KOG4300 Predicted methyltransf 99.3 1.8E-11 4E-16 110.0 11.1 102 208-310 79-185 (252)
37 PRK11873 arsM arsenite S-adeno 99.3 1.8E-11 4E-16 117.2 11.8 99 207-307 79-183 (272)
38 PF05401 NodS: Nodulation prot 99.3 9E-12 1.9E-16 112.2 7.9 100 203-307 41-146 (201)
39 PF03848 TehB: Tellurite resis 99.3 4E-11 8.7E-16 108.7 11.4 109 195-307 22-133 (192)
40 PRK12335 tellurite resistance 99.3 3.2E-11 7E-16 116.7 11.1 97 208-307 123-223 (287)
41 PF03141 Methyltransf_29: Puta 99.2 4E-11 8.7E-16 120.9 11.5 125 201-347 361-489 (506)
42 PF13649 Methyltransf_25: Meth 99.2 5.6E-12 1.2E-16 102.6 4.2 92 209-301 1-101 (101)
43 smart00828 PKS_MT Methyltransf 99.2 2.9E-11 6.2E-16 112.3 9.3 98 208-308 2-105 (224)
44 TIGR02469 CbiT precorrin-6Y C5 99.2 2.5E-10 5.5E-15 95.2 12.2 111 190-307 6-122 (124)
45 PF05175 MTS: Methyltransferas 99.2 3.2E-10 6.8E-15 101.3 13.3 117 189-308 17-141 (170)
46 TIGR00406 prmA ribosomal prote 99.2 2.3E-10 5E-15 110.8 13.2 96 207-308 161-260 (288)
47 PRK00121 trmB tRNA (guanine-N( 99.2 1.2E-10 2.7E-15 106.9 10.0 102 207-310 42-159 (202)
48 PRK06922 hypothetical protein; 99.2 9.5E-11 2.1E-15 122.6 10.2 99 208-308 421-538 (677)
49 PRK00216 ubiE ubiquinone/menaq 99.2 3.2E-10 6.9E-15 105.7 12.5 114 191-307 39-158 (239)
50 COG4106 Tam Trans-aconitate me 99.2 6.4E-11 1.4E-15 107.3 7.3 109 193-310 20-132 (257)
51 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.5E-10 3.2E-15 107.3 10.0 96 208-307 37-152 (213)
52 COG2264 PrmA Ribosomal protein 99.2 2.9E-10 6.3E-15 109.3 12.0 97 205-307 162-263 (300)
53 TIGR03587 Pse_Me-ase pseudamin 99.2 2.2E-10 4.8E-15 105.5 10.6 93 207-307 45-142 (204)
54 PRK13944 protein-L-isoaspartat 99.2 3.5E-10 7.7E-15 104.1 12.0 108 190-307 59-173 (205)
55 smart00138 MeTrc Methyltransfe 99.1 7.7E-11 1.7E-15 112.7 7.8 102 206-307 100-242 (264)
56 PLN02336 phosphoethanolamine N 99.1 9.8E-11 2.1E-15 121.0 9.1 112 192-308 26-143 (475)
57 TIGR00138 gidB 16S rRNA methyl 99.1 4.1E-10 8.8E-15 101.8 11.7 95 207-308 44-143 (181)
58 PRK08287 cobalt-precorrin-6Y C 99.1 1.8E-09 3.8E-14 97.8 15.9 112 188-307 16-131 (187)
59 TIGR00091 tRNA (guanine-N(7)-) 99.1 2.1E-10 4.5E-15 104.7 9.4 101 208-310 19-135 (194)
60 PRK11705 cyclopropane fatty ac 99.1 2.9E-10 6.2E-15 114.3 11.2 108 189-307 153-267 (383)
61 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 5.5E-10 1.2E-14 103.0 12.3 110 190-307 26-143 (223)
62 PRK15001 SAM-dependent 23S rib 99.1 6.2E-10 1.3E-14 111.2 13.4 117 188-307 213-340 (378)
63 KOG1270 Methyltransferases [Co 99.1 1.1E-10 2.3E-15 108.9 7.1 103 206-310 90-198 (282)
64 PRK14121 tRNA (guanine-N(7)-)- 99.1 4.9E-10 1.1E-14 111.7 12.3 100 208-309 125-237 (390)
65 PF08003 Methyltransf_9: Prote 99.1 4.7E-10 1E-14 107.3 11.4 108 193-306 105-218 (315)
66 PRK00517 prmA ribosomal protei 99.1 1.3E-09 2.8E-14 103.4 14.5 91 207-308 121-214 (250)
67 PRK11188 rrmJ 23S rRNA methylt 99.1 2.1E-10 4.6E-15 106.0 8.4 101 192-307 39-165 (209)
68 PF06325 PrmA: Ribosomal prote 99.1 5.4E-10 1.2E-14 108.1 11.3 123 178-307 134-259 (295)
69 PRK13942 protein-L-isoaspartat 99.1 9.3E-10 2E-14 101.9 12.3 109 189-307 62-176 (212)
70 TIGR00080 pimt protein-L-isoas 99.1 1.3E-09 2.7E-14 101.1 13.0 108 190-307 64-177 (215)
71 COG2813 RsmC 16S RNA G1207 met 99.1 1.2E-09 2.6E-14 104.6 12.9 119 186-308 141-267 (300)
72 TIGR02021 BchM-ChlM magnesium 99.1 7.5E-10 1.6E-14 102.7 11.1 114 189-306 39-157 (219)
73 TIGR03534 RF_mod_PrmC protein- 99.1 5.7E-09 1.2E-13 98.3 16.2 117 187-307 72-217 (251)
74 PLN03075 nicotianamine synthas 99.1 1.2E-09 2.5E-14 105.3 11.2 101 206-307 124-233 (296)
75 PRK09489 rsmC 16S ribosomal RN 99.0 1.5E-09 3.4E-14 107.4 11.8 115 189-308 182-304 (342)
76 PRK13255 thiopurine S-methyltr 99.0 9.8E-10 2.1E-14 102.2 9.4 94 208-305 40-153 (218)
77 TIGR02716 C20_methyl_CrtF C-20 99.0 1.6E-09 3.6E-14 105.6 11.4 110 192-307 138-254 (306)
78 PRK07580 Mg-protoporphyrin IX 99.0 2E-09 4.4E-14 100.1 10.7 112 190-304 47-163 (230)
79 PRK06202 hypothetical protein; 99.0 3.4E-09 7.4E-14 99.2 11.8 93 207-306 62-165 (232)
80 PRK05134 bifunctional 3-demeth 99.0 3.6E-09 7.8E-14 98.9 11.9 114 192-310 37-154 (233)
81 PLN02585 magnesium protoporphy 99.0 4.1E-09 9E-14 103.1 12.7 117 189-308 127-251 (315)
82 TIGR00537 hemK_rel_arch HemK-r 99.0 3.1E-09 6.7E-14 95.5 10.9 98 208-309 22-142 (179)
83 KOG3010 Methyltransferase [Gen 99.0 7.3E-10 1.6E-14 102.1 6.6 92 207-306 35-136 (261)
84 PRK04266 fibrillarin; Provisio 99.0 3.9E-09 8.4E-14 98.7 11.6 104 197-309 66-178 (226)
85 PRK14967 putative methyltransf 99.0 7.5E-09 1.6E-13 96.4 13.5 100 208-309 39-161 (223)
86 TIGR02081 metW methionine bios 99.0 3.1E-09 6.7E-14 96.8 10.4 103 193-310 5-112 (194)
87 COG4976 Predicted methyltransf 99.0 3.2E-10 7E-15 103.5 3.6 99 204-308 124-226 (287)
88 PF05219 DREV: DREV methyltran 99.0 2.9E-09 6.4E-14 99.7 10.0 152 179-340 66-224 (265)
89 PTZ00146 fibrillarin; Provisio 99.0 6.4E-09 1.4E-13 99.9 12.6 100 200-307 129-237 (293)
90 TIGR01177 conserved hypothetic 99.0 6.7E-09 1.5E-13 102.5 13.0 116 192-310 171-297 (329)
91 TIGR01983 UbiG ubiquinone bios 99.0 6.1E-09 1.3E-13 96.6 11.5 102 207-310 47-152 (224)
92 PRK00312 pcm protein-L-isoaspa 98.9 1.1E-08 2.4E-13 94.4 12.4 108 191-308 66-176 (212)
93 PRK14968 putative methyltransf 98.9 1.4E-08 3.1E-13 91.1 12.7 102 207-309 25-150 (188)
94 PRK00377 cbiT cobalt-precorrin 98.9 3.3E-08 7.1E-13 90.4 14.7 105 196-307 33-145 (198)
95 KOG1271 Methyltransferases [Ge 98.9 7.6E-09 1.6E-13 91.6 9.5 120 190-310 50-184 (227)
96 PRK09328 N5-glutamine S-adenos 98.9 5E-08 1.1E-12 93.4 16.1 116 189-307 94-238 (275)
97 PF13659 Methyltransf_26: Meth 98.9 2.8E-09 6.2E-14 88.4 6.2 101 207-308 2-116 (117)
98 PRK07402 precorrin-6B methylas 98.9 2.9E-08 6.3E-13 90.6 13.4 112 189-308 26-143 (196)
99 PF05148 Methyltransf_8: Hypot 98.9 8.1E-09 1.8E-13 93.9 8.5 97 193-307 61-158 (219)
100 COG2518 Pcm Protein-L-isoaspar 98.9 2.7E-08 5.8E-13 90.9 11.9 108 190-307 59-169 (209)
101 TIGR03533 L3_gln_methyl protei 98.9 5.1E-08 1.1E-12 94.3 14.6 101 207-308 123-252 (284)
102 TIGR00536 hemK_fam HemK family 98.8 8.6E-08 1.9E-12 92.7 15.6 119 188-308 98-245 (284)
103 TIGR03438 probable methyltrans 98.8 2.7E-08 5.9E-13 97.0 11.9 101 207-308 65-178 (301)
104 COG4123 Predicted O-methyltran 98.8 3.8E-08 8.2E-13 92.4 12.1 105 206-310 45-173 (248)
105 PF01135 PCMT: Protein-L-isoas 98.8 1.7E-08 3.6E-13 93.2 9.5 109 189-307 58-172 (209)
106 cd02440 AdoMet_MTases S-adenos 98.8 2.3E-08 4.9E-13 78.9 8.6 98 208-306 1-103 (107)
107 KOG2361 Predicted methyltransf 98.8 9.1E-09 2E-13 95.0 7.0 120 186-310 52-186 (264)
108 KOG3045 Predicted RNA methylas 98.8 3.2E-08 6.8E-13 92.1 10.2 96 193-307 169-264 (325)
109 KOG2940 Predicted methyltransf 98.8 3.1E-09 6.6E-14 97.2 3.4 95 207-307 74-174 (325)
110 PRK14966 unknown domain/N5-glu 98.8 1.7E-07 3.6E-12 94.4 15.8 115 187-307 237-381 (423)
111 PRK13256 thiopurine S-methyltr 98.8 4.5E-08 9.8E-13 91.2 10.9 100 207-307 45-163 (226)
112 PRK11805 N5-glutamine S-adenos 98.8 1.1E-07 2.5E-12 92.8 14.3 100 207-307 135-263 (307)
113 KOG1541 Predicted protein carb 98.8 2.9E-08 6.2E-13 90.5 9.1 116 189-310 34-163 (270)
114 PRK13943 protein-L-isoaspartat 98.8 5.2E-08 1.1E-12 95.6 11.5 107 190-306 67-179 (322)
115 TIGR00438 rrmJ cell division p 98.8 6.5E-08 1.4E-12 87.7 11.3 88 208-307 35-146 (188)
116 PF03291 Pox_MCEL: mRNA cappin 98.7 2.8E-08 6.1E-13 97.9 8.6 120 191-311 49-190 (331)
117 KOG1975 mRNA cap methyltransfe 98.7 5.2E-08 1.1E-12 93.3 9.3 104 208-311 120-241 (389)
118 PRK01544 bifunctional N5-gluta 98.7 1.6E-07 3.5E-12 97.8 13.9 100 207-307 140-269 (506)
119 COG2242 CobL Precorrin-6B meth 98.7 5.8E-07 1.3E-11 80.6 15.2 110 189-307 20-135 (187)
120 PRK00811 spermidine synthase; 98.7 3E-07 6.4E-12 88.9 14.5 102 205-307 76-191 (283)
121 PF06080 DUF938: Protein of un 98.7 9.3E-08 2E-12 87.2 10.3 162 189-356 12-204 (204)
122 PLN02232 ubiquinone biosynthes 98.7 3.1E-08 6.7E-13 87.6 7.0 77 230-307 2-81 (160)
123 COG2519 GCD14 tRNA(1-methylade 98.7 5.8E-07 1.3E-11 84.0 14.0 108 194-310 85-198 (256)
124 PF00891 Methyltransf_2: O-met 98.6 1.9E-07 4E-12 87.9 10.8 103 193-307 90-199 (241)
125 COG2890 HemK Methylase of poly 98.6 3.6E-07 7.9E-12 88.1 12.9 114 189-307 97-238 (280)
126 TIGR03704 PrmC_rel_meth putati 98.6 8.3E-07 1.8E-11 84.4 15.1 117 187-308 69-217 (251)
127 smart00650 rADc Ribosomal RNA 98.6 1.3E-07 2.8E-12 84.3 9.0 105 193-306 3-112 (169)
128 PRK14904 16S rRNA methyltransf 98.6 1.6E-07 3.5E-12 96.5 10.5 102 207-310 252-380 (445)
129 PRK14901 16S rRNA methyltransf 98.6 3.8E-07 8.3E-12 93.4 12.6 113 195-310 244-387 (434)
130 PRK04457 spermidine synthase; 98.6 4.7E-07 1E-11 86.6 12.4 102 206-307 67-177 (262)
131 PF02390 Methyltransf_4: Putat 98.6 3.9E-07 8.5E-12 83.3 11.2 98 208-307 20-133 (195)
132 PRK10901 16S rRNA methyltransf 98.6 5.9E-07 1.3E-11 91.8 13.2 111 196-310 237-375 (427)
133 TIGR00563 rsmB ribosomal RNA s 98.6 5.1E-07 1.1E-11 92.3 12.3 114 194-310 229-371 (426)
134 PRK14903 16S rRNA methyltransf 98.5 5.4E-07 1.2E-11 92.1 11.8 110 198-310 232-369 (431)
135 TIGR00417 speE spermidine synt 98.5 1.9E-06 4.2E-11 82.7 14.9 101 206-307 73-186 (270)
136 TIGR00446 nop2p NOL1/NOP2/sun 98.5 3.1E-07 6.8E-12 87.9 9.3 102 208-310 74-202 (264)
137 PRK13168 rumA 23S rRNA m(5)U19 98.5 6.9E-07 1.5E-11 91.7 11.8 115 188-310 282-403 (443)
138 PRK10909 rsmD 16S rRNA m(2)G96 98.5 1.7E-06 3.6E-11 79.4 12.9 119 185-309 34-161 (199)
139 PRK14902 16S rRNA methyltransf 98.5 5.9E-07 1.3E-11 92.2 10.7 112 195-310 242-382 (444)
140 COG0220 Predicted S-adenosylme 98.5 1.2E-06 2.6E-11 81.8 11.6 99 208-308 51-165 (227)
141 PLN02781 Probable caffeoyl-CoA 98.4 6E-07 1.3E-11 84.4 8.3 107 190-306 58-177 (234)
142 PLN02366 spermidine synthase 98.4 4.3E-06 9.3E-11 81.7 14.4 101 206-307 92-206 (308)
143 PF05891 Methyltransf_PK: AdoM 98.4 4.6E-07 1E-11 83.2 6.7 135 205-348 55-200 (218)
144 TIGR00478 tly hemolysin TlyA f 98.4 2.4E-06 5.1E-11 79.9 11.6 106 186-307 57-171 (228)
145 PRK03522 rumB 23S rRNA methylu 98.4 2.8E-06 6E-11 83.4 11.5 116 189-311 159-278 (315)
146 PRK01581 speE spermidine synth 98.4 2.1E-06 4.5E-11 85.0 10.3 97 205-307 150-268 (374)
147 PHA03411 putative methyltransf 98.3 2.5E-06 5.4E-11 81.4 9.5 92 208-306 67-182 (279)
148 PF08704 GCD14: tRNA methyltra 98.3 6E-06 1.3E-10 78.0 11.8 110 192-310 29-149 (247)
149 PF01739 CheR: CheR methyltran 98.3 1E-06 2.2E-11 80.6 6.1 114 189-307 13-175 (196)
150 COG4122 Predicted O-methyltran 98.3 1.6E-05 3.4E-10 73.7 13.7 108 189-306 48-165 (219)
151 PRK03612 spermidine synthase; 98.3 8.3E-06 1.8E-10 85.4 13.2 96 206-307 298-415 (521)
152 KOG2899 Predicted methyltransf 98.3 5.1E-06 1.1E-10 77.0 10.1 97 205-306 58-208 (288)
153 PF05724 TPMT: Thiopurine S-me 98.3 3.8E-06 8.3E-11 78.1 9.5 94 207-305 39-153 (218)
154 TIGR00479 rumA 23S rRNA (uraci 98.3 7.5E-06 1.6E-10 83.8 12.0 115 188-309 277-398 (431)
155 PLN02476 O-methyltransferase 98.2 2E-05 4.4E-10 75.7 13.6 95 207-306 120-227 (278)
156 PLN02672 methionine S-methyltr 98.2 1.7E-05 3.7E-10 88.4 14.8 100 207-307 120-278 (1082)
157 PF01596 Methyltransf_3: O-met 98.2 3.5E-05 7.5E-10 71.0 14.2 106 191-306 36-154 (205)
158 KOG3987 Uncharacterized conser 98.2 1.6E-06 3.4E-11 78.4 5.1 150 176-335 83-239 (288)
159 PHA03412 putative methyltransf 98.2 1.4E-05 3.1E-10 74.7 11.3 90 208-305 52-160 (241)
160 KOG1499 Protein arginine N-met 98.2 5.8E-06 1.3E-10 80.6 8.8 97 207-305 62-165 (346)
161 PRK11783 rlmL 23S rRNA m(2)G24 98.2 4.5E-06 9.9E-11 90.4 8.5 102 207-309 540-658 (702)
162 PRK01544 bifunctional N5-gluta 98.2 9.2E-06 2E-10 84.7 10.3 100 206-307 348-462 (506)
163 PRK15128 23S rRNA m(5)C1962 me 98.2 2.2E-05 4.7E-10 79.5 12.6 101 207-308 222-340 (396)
164 PRK10611 chemotaxis methyltran 98.2 2E-06 4.4E-11 83.0 4.9 100 207-306 117-261 (287)
165 TIGR02085 meth_trns_rumB 23S r 98.1 2.1E-05 4.6E-10 79.0 12.0 113 191-310 221-337 (374)
166 PF10294 Methyltransf_16: Puta 98.0 2.8E-05 6.1E-10 69.7 9.7 121 185-308 21-157 (173)
167 PRK14896 ksgA 16S ribosomal RN 98.0 1.2E-05 2.6E-10 76.7 7.8 84 189-279 15-101 (258)
168 PF07942 N2227: N2227-like pro 98.0 4.5E-05 9.7E-10 72.9 11.5 156 189-349 38-242 (270)
169 COG1352 CheR Methylase of chem 98.0 1.8E-05 3.9E-10 75.6 8.2 41 266-306 199-240 (268)
170 COG0500 SmtA SAM-dependent met 98.0 4.6E-05 9.9E-10 63.0 9.6 99 209-310 52-158 (257)
171 KOG2904 Predicted methyltransf 98.0 7.8E-05 1.7E-09 70.4 11.9 120 188-308 130-286 (328)
172 KOG1269 SAM-dependent methyltr 98.0 9.7E-06 2.1E-10 80.7 6.0 98 208-306 113-214 (364)
173 PRK11727 23S rRNA mA1618 methy 98.0 8.1E-05 1.8E-09 73.1 12.2 93 187-279 90-199 (321)
174 COG1041 Predicted DNA modifica 97.9 4E-05 8.7E-10 75.1 9.3 111 191-308 185-311 (347)
175 PRK00274 ksgA 16S ribosomal RN 97.9 2.6E-05 5.6E-10 75.0 7.8 81 190-277 29-113 (272)
176 PLN02823 spermine synthase 97.9 8.4E-05 1.8E-09 73.5 11.3 97 205-307 103-220 (336)
177 PLN02589 caffeoyl-CoA O-methyl 97.9 3.2E-05 7E-10 73.2 7.6 107 190-306 69-189 (247)
178 KOG1331 Predicted methyltransf 97.9 1.6E-05 3.4E-10 75.5 4.8 93 208-306 48-142 (293)
179 PF11968 DUF3321: Putative met 97.9 0.00017 3.7E-09 66.3 11.3 145 188-358 32-194 (219)
180 PTZ00338 dimethyladenosine tra 97.9 5.5E-05 1.2E-09 73.5 8.6 85 189-277 22-109 (294)
181 PF12147 Methyltransf_20: Puta 97.9 0.00015 3.2E-09 69.4 11.2 170 133-310 69-252 (311)
182 TIGR00755 ksgA dimethyladenosi 97.8 0.00015 3.2E-09 68.9 11.2 80 189-277 15-102 (253)
183 PF01728 FtsJ: FtsJ-like methy 97.8 5.4E-05 1.2E-09 68.0 7.4 108 187-307 4-139 (181)
184 PF02527 GidB: rRNA small subu 97.8 0.00018 3.9E-09 65.2 10.4 93 208-306 51-147 (184)
185 KOG3178 Hydroxyindole-O-methyl 97.8 5.3E-05 1.1E-09 74.1 7.3 96 206-308 178-276 (342)
186 COG2521 Predicted archaeal met 97.8 3.6E-05 7.9E-10 71.1 5.6 96 207-307 136-245 (287)
187 PF02475 Met_10: Met-10+ like- 97.8 0.00015 3.2E-09 66.6 9.5 120 174-304 74-199 (200)
188 PF01170 UPF0020: Putative RNA 97.8 0.00022 4.7E-09 64.3 10.4 112 190-307 15-151 (179)
189 TIGR00095 RNA methyltransferas 97.8 0.00052 1.1E-08 62.4 12.9 115 188-308 33-160 (189)
190 PRK04338 N(2),N(2)-dimethylgua 97.7 0.00014 3E-09 73.3 9.2 94 208-307 60-158 (382)
191 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 8.2E-05 1.8E-09 70.6 7.0 117 191-307 42-199 (256)
192 PRK11933 yebU rRNA (cytosine-C 97.7 0.0005 1.1E-08 71.0 13.2 105 207-312 115-247 (470)
193 KOG1661 Protein-L-isoaspartate 97.7 0.00012 2.7E-09 66.6 7.6 91 203-307 82-193 (237)
194 COG0421 SpeE Spermidine syntha 97.7 0.00056 1.2E-08 66.0 12.6 111 191-307 61-190 (282)
195 COG2263 Predicted RNA methylas 97.7 0.00031 6.7E-09 63.2 9.4 68 207-279 47-118 (198)
196 PF05185 PRMT5: PRMT5 arginine 97.6 0.00024 5.2E-09 72.9 9.7 96 207-305 188-295 (448)
197 COG3963 Phospholipid N-methylt 97.6 0.00027 5.9E-09 62.2 8.1 111 189-307 34-156 (194)
198 KOG3191 Predicted N6-DNA-methy 97.6 0.00096 2.1E-08 59.6 11.1 100 207-308 45-169 (209)
199 KOG2352 Predicted spermine/spe 97.5 0.00038 8.3E-09 70.8 9.4 98 208-307 51-161 (482)
200 PRK04148 hypothetical protein; 97.5 0.00069 1.5E-08 58.0 9.4 100 191-306 4-108 (134)
201 PF09243 Rsm22: Mitochondrial 97.5 0.00058 1.3E-08 65.8 9.5 111 189-310 19-142 (274)
202 PRK00536 speE spermidine synth 97.5 0.001 2.3E-08 63.5 10.9 103 192-307 58-171 (262)
203 PRK05031 tRNA (uracil-5-)-meth 97.5 0.00068 1.5E-08 67.9 10.0 113 188-310 192-323 (362)
204 TIGR02143 trmA_only tRNA (urac 97.4 0.00079 1.7E-08 67.2 9.7 114 187-310 182-314 (353)
205 COG0030 KsgA Dimethyladenosine 97.4 0.00061 1.3E-08 64.7 7.8 82 189-277 16-103 (259)
206 PF03602 Cons_hypoth95: Conser 97.4 0.00046 9.9E-09 62.5 6.7 130 172-308 10-154 (183)
207 KOG1663 O-methyltransferase [S 97.4 0.00089 1.9E-08 62.0 8.6 106 191-306 64-182 (237)
208 PF01564 Spermine_synth: Sperm 97.3 0.00084 1.8E-08 63.6 8.7 102 205-307 76-191 (246)
209 COG0293 FtsJ 23S rRNA methylas 97.3 0.0018 3.8E-08 59.4 9.7 110 185-307 26-159 (205)
210 TIGR00308 TRM1 tRNA(guanine-26 97.3 0.0016 3.5E-08 65.4 10.3 93 208-306 47-146 (374)
211 PF02384 N6_Mtase: N-6 DNA Met 97.3 0.00061 1.3E-08 66.5 7.0 119 189-310 32-186 (311)
212 KOG0820 Ribosomal RNA adenine 97.2 0.00096 2.1E-08 63.2 7.5 80 190-276 45-130 (315)
213 COG1189 Predicted rRNA methyla 97.2 0.013 2.7E-07 54.8 14.6 145 190-346 65-221 (245)
214 COG2265 TrmA SAM-dependent met 97.2 0.0024 5.2E-08 65.3 10.2 117 187-310 277-399 (432)
215 COG0742 N6-adenine-specific me 97.1 0.0073 1.6E-07 54.6 11.9 130 172-308 11-155 (187)
216 COG0357 GidB Predicted S-adeno 97.1 0.0095 2.1E-07 55.2 12.6 92 207-305 69-166 (215)
217 PRK11760 putative 23S rRNA C24 97.1 0.0041 9E-08 61.2 10.7 88 206-306 212-304 (357)
218 COG4627 Uncharacterized protei 97.1 0.00014 3.1E-09 63.1 0.3 53 261-313 39-92 (185)
219 KOG1500 Protein arginine N-met 97.0 0.004 8.7E-08 60.6 9.4 95 206-307 178-282 (517)
220 PF01269 Fibrillarin: Fibrilla 97.0 0.0044 9.5E-08 57.4 9.3 101 199-307 69-178 (229)
221 KOG2915 tRNA(1-methyladenosine 96.9 0.014 3E-07 55.5 12.1 110 192-310 94-213 (314)
222 COG2520 Predicted methyltransf 96.9 0.0076 1.7E-07 59.5 10.5 122 176-307 163-289 (341)
223 COG0144 Sun tRNA and rRNA cyto 96.9 0.015 3.3E-07 58.0 12.8 112 197-311 150-292 (355)
224 COG1092 Predicted SAM-dependen 96.9 0.0032 6.9E-08 63.4 7.7 103 207-310 219-339 (393)
225 KOG1709 Guanidinoacetate methy 96.8 0.0055 1.2E-07 56.3 8.2 109 189-306 88-205 (271)
226 TIGR03439 methyl_EasF probable 96.8 0.012 2.5E-07 57.9 11.3 112 191-307 66-197 (319)
227 TIGR02987 met_A_Alw26 type II 96.8 0.0071 1.5E-07 63.5 10.1 20 207-226 33-52 (524)
228 COG4798 Predicted methyltransf 96.6 0.0061 1.3E-07 55.1 6.6 107 198-308 43-167 (238)
229 PF08123 DOT1: Histone methyla 96.6 0.014 3.1E-07 53.8 9.2 118 184-306 23-157 (205)
230 PF05958 tRNA_U5-meth_tr: tRNA 96.5 0.0064 1.4E-07 60.7 7.3 70 187-260 181-252 (352)
231 COG1889 NOP1 Fibrillarin-like 96.5 0.036 7.8E-07 50.6 11.2 101 199-307 72-180 (231)
232 KOG2798 Putative trehalase [Ca 96.5 0.015 3.3E-07 56.2 9.0 79 268-348 258-336 (369)
233 KOG3420 Predicted RNA methylas 96.4 0.0051 1.1E-07 53.1 4.9 84 192-278 37-123 (185)
234 PF10672 Methyltrans_SAM: S-ad 96.4 0.015 3.3E-07 56.3 8.4 103 207-310 125-241 (286)
235 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.033 7.2E-07 60.6 11.6 119 189-310 175-350 (702)
236 PRK00050 16S rRNA m(4)C1402 me 96.3 0.0067 1.5E-07 59.0 5.4 82 191-277 7-98 (296)
237 COG5459 Predicted rRNA methyla 96.2 0.01 2.2E-07 58.1 6.2 117 191-310 101-228 (484)
238 PF13679 Methyltransf_32: Meth 96.1 0.047 1E-06 47.0 9.6 97 206-310 26-134 (141)
239 PF00398 RrnaAD: Ribosomal RNA 96.1 0.012 2.7E-07 56.1 6.3 100 189-299 16-123 (262)
240 KOG3201 Uncharacterized conser 95.9 0.0032 7E-08 55.3 1.3 101 207-310 31-143 (201)
241 COG4262 Predicted spermidine s 95.9 0.036 7.7E-07 54.8 8.3 130 176-307 259-407 (508)
242 PLN02668 indole-3-acetate carb 95.8 0.038 8.2E-07 55.6 8.3 76 207-283 65-175 (386)
243 KOG2187 tRNA uracil-5-methyltr 95.7 0.016 3.5E-07 59.5 5.4 71 187-260 367-439 (534)
244 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.6 0.036 7.7E-07 53.7 7.4 102 208-310 88-222 (283)
245 PF09445 Methyltransf_15: RNA 95.5 0.015 3.3E-07 51.5 4.0 68 208-276 2-76 (163)
246 COG3897 Predicted methyltransf 95.5 0.083 1.8E-06 48.0 8.6 95 207-307 81-178 (218)
247 PF13578 Methyltransf_24: Meth 95.3 0.0079 1.7E-07 48.8 1.3 93 210-306 1-104 (106)
248 PF03492 Methyltransf_7: SAM d 95.1 0.18 3.9E-06 50.0 10.5 80 203-283 14-120 (334)
249 COG0116 Predicted N6-adenine-s 94.8 0.28 6E-06 49.2 10.9 112 191-308 179-345 (381)
250 PF04672 Methyltransf_19: S-ad 94.2 0.5 1.1E-05 45.2 10.7 100 205-308 68-191 (267)
251 PF04816 DUF633: Family of unk 94.1 0.41 8.9E-06 44.1 9.7 94 209-306 1-100 (205)
252 PF03059 NAS: Nicotianamine sy 94.0 0.3 6.5E-06 47.0 8.9 100 206-306 121-229 (276)
253 TIGR01444 fkbM_fam methyltrans 94.0 0.12 2.5E-06 44.0 5.5 46 208-254 1-50 (143)
254 KOG1596 Fibrillarin and relate 93.8 0.47 1E-05 44.5 9.4 98 202-307 155-261 (317)
255 KOG1122 tRNA and rRNA cytosine 93.6 0.42 9.1E-06 48.2 9.3 106 203-310 239-374 (460)
256 COG4076 Predicted RNA methylas 93.6 0.11 2.3E-06 47.1 4.5 91 208-305 35-133 (252)
257 PF06859 Bin3: Bicoid-interact 93.5 0.071 1.5E-06 43.9 3.1 38 269-307 1-44 (110)
258 KOG2198 tRNA cytosine-5-methyl 93.1 1.1 2.4E-05 44.6 11.3 138 202-353 154-332 (375)
259 KOG3115 Methyltransferase-like 93.1 0.26 5.6E-06 45.2 6.2 26 208-233 63-92 (249)
260 PF01861 DUF43: Protein of unk 92.9 3 6.5E-05 39.3 13.3 91 206-301 45-142 (243)
261 COG1064 AdhP Zn-dependent alco 92.9 0.23 5E-06 49.1 6.2 89 208-309 169-261 (339)
262 PF06962 rRNA_methylase: Putat 92.8 0.68 1.5E-05 40.0 8.2 81 228-309 2-94 (140)
263 PF05971 Methyltransf_10: Prot 92.8 0.38 8.2E-06 46.8 7.4 93 187-279 81-187 (299)
264 KOG1099 SAM-dependent methyltr 92.3 0.24 5.2E-06 46.1 5.0 89 206-306 42-162 (294)
265 KOG4589 Cell division protein 92.2 0.36 7.7E-06 43.7 5.9 88 207-306 71-183 (232)
266 PRK13699 putative methylase; P 92.2 0.55 1.2E-05 43.9 7.5 43 264-306 15-71 (227)
267 PF03269 DUF268: Caenorhabditi 91.2 0.17 3.6E-06 44.7 2.7 44 267-310 61-114 (177)
268 COG2384 Predicted SAM-dependen 91.0 1.1 2.5E-05 41.4 8.0 109 190-305 5-118 (226)
269 PRK11524 putative methyltransf 90.3 0.67 1.5E-05 44.7 6.3 44 264-307 22-80 (284)
270 PF07757 AdoMet_MTase: Predict 89.2 0.61 1.3E-05 38.3 4.2 27 207-233 60-86 (112)
271 PF10354 DUF2431: Domain of un 88.6 4.4 9.6E-05 36.0 9.7 96 212-307 3-125 (166)
272 COG3129 Predicted SAM-dependen 87.9 1 2.2E-05 42.2 5.2 107 173-279 41-163 (292)
273 COG4301 Uncharacterized conser 87.7 5.6 0.00012 37.8 10.0 101 207-307 80-193 (321)
274 PF04989 CmcI: Cephalosporin h 87.5 1.3 2.8E-05 40.8 5.7 94 208-307 35-147 (206)
275 cd08283 FDH_like_1 Glutathione 86.4 3 6.5E-05 41.8 8.3 95 208-307 187-306 (386)
276 COG0286 HsdM Type I restrictio 86.4 6.2 0.00013 41.2 10.8 119 189-310 172-329 (489)
277 PRK10742 putative methyltransf 86.3 4.7 0.0001 38.3 8.9 85 193-279 76-174 (250)
278 cd08254 hydroxyacyl_CoA_DH 6-h 86.2 4.3 9.3E-05 39.1 9.1 88 208-307 168-263 (338)
279 KOG2920 Predicted methyltransf 86.2 0.25 5.3E-06 47.4 0.3 38 269-307 196-234 (282)
280 PF07091 FmrO: Ribosomal RNA m 85.2 3.8 8.2E-05 38.9 7.7 142 188-343 92-238 (251)
281 PRK09880 L-idonate 5-dehydroge 85.1 5.6 0.00012 39.0 9.4 89 207-307 171-266 (343)
282 KOG2793 Putative N2,N2-dimethy 84.9 3.8 8.2E-05 38.9 7.6 37 270-307 163-199 (248)
283 KOG0822 Protein kinase inhibit 84.3 3 6.5E-05 43.5 7.0 115 190-306 351-477 (649)
284 PF02005 TRM: N2,N2-dimethylgu 84.2 2.1 4.5E-05 43.3 5.9 95 207-307 51-154 (377)
285 KOG2539 Mitochondrial/chloropl 82.6 3.1 6.7E-05 42.7 6.3 99 207-310 202-318 (491)
286 PF03514 GRAS: GRAS domain fam 82.2 13 0.00028 37.4 10.7 99 208-306 113-243 (374)
287 PRK09424 pntA NAD(P) transhydr 81.3 6.3 0.00014 41.4 8.3 96 206-307 165-285 (509)
288 cd08230 glucose_DH Glucose deh 80.7 11 0.00024 37.0 9.6 89 208-307 175-269 (355)
289 PHA01634 hypothetical protein 78.9 8.2 0.00018 33.0 6.6 29 207-235 30-61 (156)
290 KOG1562 Spermidine synthase [A 78.8 5.3 0.00012 38.8 6.2 97 205-307 121-236 (337)
291 PRK15001 SAM-dependent 23S rib 76.8 24 0.00052 35.6 10.6 93 208-307 47-142 (378)
292 PF00107 ADH_zinc_N: Zinc-bind 75.8 2.8 6E-05 34.7 3.1 83 215-309 1-91 (130)
293 TIGR00006 S-adenosyl-methyltra 75.7 9.8 0.00021 37.3 7.2 82 191-276 8-99 (305)
294 KOG4058 Uncharacterized conser 75.6 12 0.00026 32.8 6.8 48 189-238 58-108 (199)
295 KOG2730 Methylase [General fun 75.1 2.2 4.9E-05 39.7 2.4 68 208-276 97-172 (263)
296 PRK11524 putative methyltransf 73.0 14 0.00031 35.5 7.7 45 189-236 195-241 (284)
297 PF10237 N6-adenineMlase: Prob 72.7 38 0.00082 30.0 9.6 90 207-308 27-124 (162)
298 COG1565 Uncharacterized conser 72.5 6.9 0.00015 39.1 5.3 61 173-235 47-119 (370)
299 COG1063 Tdh Threonine dehydrog 71.5 14 0.0003 36.7 7.4 88 208-307 171-269 (350)
300 PRK01747 mnmC bifunctional tRN 70.6 18 0.00039 39.2 8.6 36 268-305 165-204 (662)
301 PF04445 SAM_MT: Putative SAM- 70.0 11 0.00024 35.5 5.8 88 193-280 63-162 (234)
302 TIGR02822 adh_fam_2 zinc-bindi 69.4 32 0.0007 33.5 9.4 83 208-307 168-254 (329)
303 COG1867 TRM1 N2,N2-dimethylgua 69.1 14 0.00031 36.9 6.7 91 206-307 53-154 (380)
304 cd08234 threonine_DH_like L-th 67.6 41 0.00088 32.3 9.7 87 208-307 162-257 (334)
305 cd08245 CAD Cinnamyl alcohol d 67.1 37 0.00079 32.6 9.2 88 208-307 165-256 (330)
306 TIGR03366 HpnZ_proposed putati 66.2 35 0.00077 32.3 8.8 87 208-307 123-218 (280)
307 cd05188 MDR Medium chain reduc 65.8 43 0.00094 30.6 9.1 89 207-308 136-233 (271)
308 cd08232 idonate-5-DH L-idonate 65.3 27 0.00059 33.7 8.0 89 207-307 167-262 (339)
309 COG0604 Qor NADPH:quinone redu 65.1 24 0.00052 34.7 7.5 88 208-308 145-242 (326)
310 PF01555 N6_N4_Mtase: DNA meth 64.4 12 0.00026 33.7 5.0 25 286-310 35-59 (231)
311 TIGR02825 B4_12hDH leukotriene 63.5 47 0.001 32.0 9.2 87 208-307 141-237 (325)
312 TIGR03451 mycoS_dep_FDH mycoth 63.1 51 0.0011 32.4 9.6 88 208-307 179-276 (358)
313 PF12692 Methyltransf_17: S-ad 62.7 5.6 0.00012 34.7 2.2 107 191-308 17-135 (160)
314 KOG1253 tRNA methyltransferase 62.7 6.2 0.00013 40.9 2.8 91 207-307 111-216 (525)
315 PRK13699 putative methylase; P 62.1 29 0.00062 32.4 7.0 45 189-236 150-196 (227)
316 KOG1227 Putative methyltransfe 61.6 6.1 0.00013 38.5 2.4 126 167-302 158-290 (351)
317 cd08281 liver_ADH_like1 Zinc-d 61.6 44 0.00095 33.1 8.8 88 208-307 194-290 (371)
318 cd08239 THR_DH_like L-threonin 61.6 45 0.00098 32.3 8.8 88 208-307 166-262 (339)
319 PF14740 DUF4471: Domain of un 61.1 21 0.00045 34.7 6.0 66 267-345 220-285 (289)
320 TIGR00561 pntA NAD(P) transhyd 60.4 16 0.00034 38.4 5.4 93 207-305 165-282 (511)
321 PF02636 Methyltransf_28: Puta 60.0 33 0.00071 32.3 7.2 37 207-244 20-68 (252)
322 PF05711 TylF: Macrocin-O-meth 56.1 1.5E+02 0.0033 28.1 10.8 53 252-307 157-212 (248)
323 PF01555 N6_N4_Mtase: DNA meth 56.1 17 0.00037 32.7 4.4 45 188-235 177-223 (231)
324 PF11899 DUF3419: Protein of u 55.4 20 0.00044 36.2 5.1 59 248-307 271-334 (380)
325 TIGR00853 pts-lac PTS system, 55.2 47 0.001 26.4 6.3 80 208-310 5-84 (95)
326 PLN03154 putative allyl alcoho 54.4 85 0.0018 30.8 9.4 87 208-307 161-258 (348)
327 PLN02586 probable cinnamyl alc 53.7 72 0.0016 31.5 8.8 89 208-307 186-278 (360)
328 cd05565 PTS_IIB_lactose PTS_II 53.2 25 0.00055 28.4 4.4 65 240-311 18-82 (99)
329 cd08294 leukotriene_B4_DH_like 52.8 79 0.0017 30.2 8.7 86 208-307 146-241 (329)
330 cd08255 2-desacetyl-2-hydroxye 52.2 1.1E+02 0.0023 28.5 9.3 86 208-307 100-190 (277)
331 COG0686 Ald Alanine dehydrogen 52.2 32 0.00069 33.9 5.6 91 208-305 170-266 (371)
332 cd00401 AdoHcyase S-adenosyl-L 51.5 66 0.0014 32.9 8.1 99 191-308 188-290 (413)
333 PLN02740 Alcohol dehydrogenase 50.8 94 0.002 30.9 9.2 88 208-307 201-300 (381)
334 cd08237 ribitol-5-phosphate_DH 50.6 65 0.0014 31.5 7.8 86 207-307 165-256 (341)
335 cd08261 Zn_ADH7 Alcohol dehydr 49.8 99 0.0021 29.8 9.0 88 208-307 162-258 (337)
336 KOG0024 Sorbitol dehydrogenase 49.7 68 0.0015 31.8 7.4 88 208-307 172-273 (354)
337 cd05564 PTS_IIB_chitobiose_lic 49.7 51 0.0011 26.2 5.7 77 212-310 4-80 (96)
338 TIGR01202 bchC 2-desacetyl-2-h 49.0 55 0.0012 31.5 6.9 80 208-307 147-231 (308)
339 COG3510 CmcI Cephalosporin hyd 48.9 1E+02 0.0022 28.4 7.9 93 208-307 72-180 (237)
340 PLN02827 Alcohol dehydrogenase 47.1 78 0.0017 31.5 7.9 88 208-307 196-295 (378)
341 KOG2651 rRNA adenine N-6-methy 46.4 47 0.001 33.6 5.9 29 206-234 154-185 (476)
342 TIGR03201 dearomat_had 6-hydro 45.7 1.4E+02 0.0031 29.1 9.4 89 207-307 168-272 (349)
343 PF13334 DUF4094: Domain of un 44.6 16 0.00035 29.3 2.0 19 21-39 5-23 (95)
344 KOG2912 Predicted DNA methylas 44.6 51 0.0011 32.6 5.6 46 190-235 87-136 (419)
345 cd08295 double_bond_reductase_ 44.4 1.5E+02 0.0033 28.6 9.3 87 208-307 154-251 (338)
346 cd00315 Cyt_C5_DNA_methylase C 44.3 36 0.00079 32.6 4.8 62 208-276 2-69 (275)
347 cd05285 sorbitol_DH Sorbitol d 43.6 1.7E+02 0.0036 28.3 9.5 88 208-307 165-265 (343)
348 cd08242 MDR_like Medium chain 43.6 1.7E+02 0.0036 27.9 9.4 84 208-307 158-245 (319)
349 PRK10309 galactitol-1-phosphat 43.3 1.4E+02 0.0031 28.9 9.0 88 208-307 163-260 (347)
350 cd08293 PTGR2 Prostaglandin re 41.7 1.6E+02 0.0034 28.4 8.9 87 207-307 156-254 (345)
351 PRK09590 celB cellobiose phosp 41.3 71 0.0015 26.0 5.3 81 208-311 3-85 (104)
352 cd08236 sugar_DH NAD(P)-depend 41.2 1.8E+02 0.0039 28.0 9.3 88 208-307 162-258 (343)
353 TIGR02819 fdhA_non_GSH formald 40.6 2.1E+02 0.0045 28.7 9.9 94 208-307 188-299 (393)
354 PF11599 AviRa: RRNA methyltra 40.6 47 0.001 31.0 4.5 49 189-239 37-91 (246)
355 cd08298 CAD2 Cinnamyl alcohol 40.6 1.9E+02 0.0041 27.6 9.3 83 208-307 170-256 (329)
356 PF05430 Methyltransf_30: S-ad 39.6 36 0.00079 28.6 3.5 38 268-306 49-89 (124)
357 PTZ00357 methyltransferase; Pr 39.1 1.1E+02 0.0023 33.6 7.5 94 208-302 703-830 (1072)
358 KOG3924 Putative protein methy 38.9 1.7E+02 0.0037 29.8 8.5 123 184-310 173-311 (419)
359 TIGR00027 mthyl_TIGR00027 meth 38.9 3.5E+02 0.0075 25.7 11.7 101 207-307 83-197 (260)
360 cd05278 FDH_like Formaldehyde 38.1 1.4E+02 0.0031 28.6 8.0 87 208-307 170-267 (347)
361 cd08277 liver_alcohol_DH_like 37.9 1.7E+02 0.0036 28.8 8.5 88 208-307 187-286 (365)
362 PF06072 Herpes_US9: Alphaherp 37.9 38 0.00081 24.7 2.8 18 17-34 38-55 (60)
363 TIGR02818 adh_III_F_hyde S-(hy 37.6 1.6E+02 0.0035 29.1 8.4 88 208-307 188-287 (368)
364 TIGR00497 hsdM type I restrict 37.6 2.4E+02 0.0052 29.5 10.0 121 189-310 201-358 (501)
365 PRK10299 PhoPQ regulatory prot 36.5 42 0.0009 23.2 2.6 20 14-33 5-24 (47)
366 KOG1501 Arginine N-methyltrans 36.4 1.4E+02 0.0031 30.9 7.5 43 208-251 69-114 (636)
367 COG1568 Predicted methyltransf 36.4 1.9E+02 0.004 28.3 7.9 98 207-307 154-260 (354)
368 PLN02178 cinnamyl-alcohol dehy 35.5 1.1E+02 0.0023 30.6 6.8 89 208-307 181-273 (375)
369 cd08285 NADP_ADH NADP(H)-depen 35.5 1.8E+02 0.004 28.2 8.3 87 208-307 169-266 (351)
370 PRK09489 rsmC 16S ribosomal RN 34.8 2.5E+02 0.0054 27.9 9.1 91 208-310 22-115 (342)
371 PF14314 Methyltrans_Mon: Viru 34.4 1.3E+02 0.0027 32.9 7.3 42 182-226 302-343 (675)
372 cd08300 alcohol_DH_class_III c 32.6 2.6E+02 0.0057 27.4 9.0 88 208-307 189-288 (368)
373 COG2933 Predicted SAM-dependen 32.6 3.1E+02 0.0068 26.6 8.7 79 208-299 214-295 (358)
374 cd08243 quinone_oxidoreductase 31.8 2.7E+02 0.0058 26.1 8.6 86 208-307 145-238 (320)
375 COG0287 TyrA Prephenate dehydr 31.4 1.5E+02 0.0034 28.5 6.8 87 208-304 5-95 (279)
376 cd08279 Zn_ADH_class_III Class 30.9 2.6E+02 0.0057 27.3 8.7 88 208-307 185-282 (363)
377 PF11899 DUF3419: Protein of u 29.9 1.1E+02 0.0024 31.0 5.7 52 197-250 29-82 (380)
378 cd08231 MDR_TM0436_like Hypoth 29.6 4.6E+02 0.01 25.4 10.2 33 268-307 248-280 (361)
379 cd08301 alcohol_DH_plants Plan 29.6 2.7E+02 0.0058 27.3 8.5 88 208-307 190-289 (369)
380 PF08351 DUF1726: Domain of un 29.3 83 0.0018 25.0 3.8 40 267-310 9-48 (92)
381 PLN02514 cinnamyl-alcohol dehy 29.0 3.5E+02 0.0076 26.5 9.2 89 208-307 183-275 (357)
382 TIGR00692 tdh L-threonine 3-de 28.9 3E+02 0.0065 26.5 8.6 89 208-308 164-262 (340)
383 PF05206 TRM13: Methyltransfer 28.8 97 0.0021 29.6 4.9 28 207-234 20-56 (259)
384 KOG2671 Putative RNA methylase 28.4 87 0.0019 31.4 4.5 107 202-310 207-357 (421)
385 cd08296 CAD_like Cinnamyl alco 28.1 3.1E+02 0.0067 26.3 8.5 87 208-307 166-259 (333)
386 PRK10083 putative oxidoreducta 27.6 3.5E+02 0.0077 25.8 8.8 89 208-308 163-260 (339)
387 cd08263 Zn_ADH10 Alcohol dehyd 27.3 2.8E+02 0.006 27.1 8.1 88 208-307 190-287 (367)
388 PF07101 DUF1363: Protein of u 27.1 24 0.00052 28.3 0.4 13 209-221 6-18 (124)
389 cd05283 CAD1 Cinnamyl alcohol 26.6 3.4E+02 0.0075 26.0 8.6 88 208-307 172-263 (337)
390 KOG1098 Putative SAM-dependent 26.4 70 0.0015 34.4 3.6 30 207-236 46-80 (780)
391 PLN03193 beta-1,3-galactosyltr 26.3 64 0.0014 32.9 3.2 30 10-39 10-39 (408)
392 cd08274 MDR9 Medium chain dehy 26.2 3.5E+02 0.0076 25.9 8.5 85 208-307 180-273 (350)
393 KOG0023 Alcohol dehydrogenase, 25.9 1.8E+02 0.0038 29.0 6.0 94 208-311 184-283 (360)
394 PRK06274 indolepyruvate oxidor 25.7 2.6E+02 0.0057 24.9 7.0 52 248-308 43-97 (197)
395 cd08265 Zn_ADH3 Alcohol dehydr 25.2 4.5E+02 0.0097 26.0 9.2 35 267-307 273-307 (384)
396 cd08278 benzyl_alcohol_DH Benz 25.0 2.6E+02 0.0057 27.4 7.5 89 208-308 189-286 (365)
397 cd01842 SGNH_hydrolase_like_5 24.5 1.3E+02 0.0028 27.2 4.5 43 265-307 46-99 (183)
398 cd08289 MDR_yhfp_like Yhfp put 24.3 2.6E+02 0.0057 26.4 7.2 87 208-307 149-243 (326)
399 cd05281 TDH Threonine dehydrog 24.0 4.1E+02 0.0088 25.5 8.5 87 208-307 166-262 (341)
400 PF08484 Methyltransf_14: C-me 23.9 1.6E+02 0.0034 25.9 5.0 104 187-308 49-160 (160)
401 COG5379 BtaA S-adenosylmethion 23.9 1.3E+02 0.0029 29.4 4.8 49 206-254 64-114 (414)
402 KOG0821 Predicted ribosomal RN 23.6 1E+02 0.0023 28.9 3.8 45 190-236 37-84 (326)
403 PRK05396 tdh L-threonine 3-deh 23.4 3.3E+02 0.0071 26.1 7.7 88 208-308 166-264 (341)
404 PF01558 POR: Pyruvate ferredo 22.9 1.6E+02 0.0034 25.7 4.8 52 249-309 34-88 (173)
405 cd08270 MDR4 Medium chain dehy 22.4 6E+02 0.013 23.6 9.2 84 207-307 134-222 (305)
406 PRK06853 indolepyruvate oxidor 21.9 3.6E+02 0.0077 24.2 7.1 31 268-307 67-97 (197)
407 PRK06701 short chain dehydroge 21.6 5E+02 0.011 24.5 8.5 20 288-307 162-181 (290)
408 COG0275 Predicted S-adenosylme 21.3 3.4E+02 0.0073 26.7 6.9 48 191-240 11-63 (314)
409 cd08233 butanediol_DH_like (2R 21.1 5.9E+02 0.013 24.5 9.1 33 268-307 240-272 (351)
410 PLN02702 L-idonate 5-dehydroge 20.8 5.7E+02 0.012 24.9 8.9 88 208-307 184-285 (364)
411 COG3346 Uncharacterized conser 20.7 1E+02 0.0022 29.3 3.3 24 14-37 13-36 (252)
412 TIGR00518 alaDH alanine dehydr 20.7 1.3E+02 0.0027 30.3 4.2 93 207-306 168-266 (370)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=7.6e-78 Score=597.63 Aligned_cols=290 Identities=62% Similarity=1.169 Sum_probs=279.3
Q ss_pred CcccCcChHHhccC--CcccccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCCchhhhhhhccceec
Q 036725 93 DYTPCQDQMRAMLF--PRKNMNYRERHCPPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQY 170 (392)
Q Consensus 93 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~~~~~~~~c~~~~p~gY~~Pl~wp~s~~~~wy~~~p~~~l~~~k~~q~w~~~ 170 (392)
|||||+|+.+++++ +++++++||||||+.+++.+|++|+|+||+.|++||+|+|++||+|+||+.++.+|+.|+|+++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCCCCccHHHHHHHHHhhCCC--CCCCcceEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHH
Q 036725 171 EGNVFRFPGGGTQFPHGADAYIEELASVIPM--DSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALE 248 (392)
Q Consensus 171 ~~~~~~fp~~g~~f~~~~~~~i~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~ 248 (392)
+|+.++|||+|++|++|+.+|+++|.++++. ..+.+|++||||||+|+|+++|++++|++|++++.+.+++|+|+|.+
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999987 67889999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHH
Q 036725 249 RGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEE 328 (392)
Q Consensus 249 rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~ 328 (392)
||+|+++.+.++.+||||+++||+|||++|+++|.++.+.+|.|++|+|||||||++++|+.+ ++..++...
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~ 232 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEE 232 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHH
Confidence 999999999999999999999999999999999998889999999999999999999999995 567778888
Q ss_pred HHHHHHHHHHHcCceecceeccEEEEEecCCccchhcc---CCCCCCCCC-CCCCchhhhccccccC
Q 036725 329 EQRKIEEIAKLLCWEKKHEKGETAIWQKRINYDYCQEQ---DTQPTMCES-TDAEDVWYSALFTFFH 391 (392)
Q Consensus 329 ~~~~i~~l~~~l~W~~~~~~~~~~iw~KP~~~~~c~~~---~~~~~~c~~-~~~~~~w~~~~~~c~~ 391 (392)
++..|++++++|||++++++++++|||||.+| +||.+ .+.|++|++ +|||++||++|++|++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit 298 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACIT 298 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcC
Confidence 99999999999999999999999999999998 69974 478999995 9999999999999997
No 2
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.71 E-value=6.9e-17 Score=155.03 Aligned_cols=161 Identities=21% Similarity=0.347 Sum_probs=113.1
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCCchhhhhhhccceeccCCeEEecCCCCCCCccHHHHHHHH
Q 036725 116 RHCPPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYIEEL 195 (392)
Q Consensus 116 r~C~~~~~~~~c~~~~p~gY~~Pl~wp~s~~~~wy~~~p~~~l~~~k~~q~w~~~~~~~~~fp~~g~~f~~~~~~~i~~l 195 (392)
-.|++ .|+|+.+++||++.++-...+ +..|.+...+..+++.|.. .| .|....+...+.+
T Consensus 19 ~~C~~----~h~fd~a~~Gy~~ll~~~~~~-----~~~~~d~~~~~~ar~~fl~----------~g-~y~~l~~~i~~~l 78 (272)
T PRK11088 19 WICPQ----NHQFDCAKEGYVNLLPVQHKR-----SKDPGDNKEMMQARRAFLD----------AG-HYQPLRDAVANLL 78 (272)
T ss_pred EEcCC----CCCCccccCceEEeccccccC-----CCCCCcCHHHHHHHHHHHH----------CC-ChHHHHHHHHHHH
Confidence 37887 899999999999998654444 2445677788887777664 22 2333334444445
Q ss_pred HhhCCCCCCCcceEEEECCcCchHHHHHhhC-------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCC
Q 036725 196 ASVIPMDSGMVRTALDTGCGVASWGAYLFKK-------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSR 268 (392)
Q Consensus 196 ~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~ 268 (392)
.+.++. ...+|||+|||+|.++..|++. .++++|+ ++.+++.|.++.....+.+.+...+|++++
T Consensus 79 ~~~l~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~-----s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~ 150 (272)
T PRK11088 79 AERLDE---KATALLDIGCGEGYYTHALADALPEITTMQLFGLDI-----SKVAIKYAAKRYPQVTFCVASSHRLPFADQ 150 (272)
T ss_pred HHhcCC---CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECC-----CHHHHHHHHHhCCCCeEEEeecccCCCcCC
Confidence 444442 2237999999999999988764 3577755 455677777665444445555558999999
Q ss_pred ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCch
Q 036725 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINW 312 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~ 312 (392)
+||+|++... + ..+.|+.|+|||||+|+++.|....
T Consensus 151 sfD~I~~~~~--~------~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 151 SLDAIIRIYA--P------CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred ceeEEEEecC--C------CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 9999998643 1 2368999999999999999877643
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=2.2e-16 Score=147.46 Aligned_cols=115 Identities=26% Similarity=0.404 Sum_probs=88.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
..+.+.+.+.+...+|. +|||||||||.++..+++. .|+++|+++.|+..+..+ +.+.+...+.++.++. .|
T Consensus 37 ~~Wr~~~i~~~~~~~g~--~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k-~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 37 RLWRRALISLLGIKPGD--KVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREK-LKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred HHHHHHHHHhhCCCCCC--EEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHH-hhccCccceEEEEechhhC
Confidence 34566666666654444 9999999999999999987 788998877655544332 2223333366666666 99
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
||+|++||+|.+++.+.++. |.+.+|+|++|||||||.+++..
T Consensus 114 Pf~D~sFD~vt~~fglrnv~-d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVT-DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred CCCCCccCEEEeeehhhcCC-CHHHHHHHHHHhhcCCeEEEEEE
Confidence 99999999999999997666 99999999999999999988853
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.63 E-value=9.2e-16 Score=143.87 Aligned_cols=111 Identities=26% Similarity=0.477 Sum_probs=74.9
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~ 266 (392)
+.+.+.+...++. +|||+|||+|.++..++++ .|+++|+++.|+..+..+.. +.+..++.++.++. .+|++
T Consensus 37 ~~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~-~~~~~~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 37 RKLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK-REGLQNIEFVQGDAEDLPFP 113 (233)
T ss_dssp SHHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH-HTT--SEEEEE-BTTB--S-
T ss_pred HHHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH-hhCCCCeeEEEcCHHHhcCC
Confidence 3444444434444 8999999999999998875 68899887766655544333 33444666666665 99999
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++||+|+|++.+..+. |....|+|+.|+|||||.+++..
T Consensus 114 d~sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 114 DNSFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp TT-EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 99999999999987766 89999999999999999998853
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.58 E-value=4.1e-15 Score=118.09 Aligned_cols=90 Identities=32% Similarity=0.508 Sum_probs=69.4
Q ss_pred EEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 210 LDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 210 LDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
||+|||+|.++..|+++ +++++|+ ++.+++.++++... ...+...+. .+|+++++||+|++..+++++ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~-----~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDI-----SEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES------HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeC-----CHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999999987 5777755 55567777765432 233444444 999999999999999998777 5
Q ss_pred ChHHHHHHHHHhccCCeEEEE
Q 036725 285 NDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl 305 (392)
+...+++|+.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 889999999999999999986
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.57 E-value=2.7e-14 Score=136.33 Aligned_cols=110 Identities=22% Similarity=0.242 Sum_probs=82.5
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHH--HHcCCCcEEEEeccc-cCCCC
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFA--LERGVPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a--~~rg~~~~~~~~~~~-~lp~~ 266 (392)
+.+.+...++ .+|||+|||+|.++..++++ .|+++|+++.++..+..+.. .....+.+.++.++. .+|++
T Consensus 65 ~~~~~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~ 142 (261)
T PLN02233 65 AVSWSGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD 142 (261)
T ss_pred HHHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC
Confidence 3344443344 38999999999999888764 68999887766655443321 112234555566655 89999
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++||+|+++.+++++. ++..+++|+.|+|||||++++..
T Consensus 143 ~~sfD~V~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 143 DCYFDAITMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred CCCEeEEEEecccccCC-CHHHHHHHHHHHcCcCcEEEEEE
Confidence 99999999999987665 89999999999999999999875
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.54 E-value=5.4e-14 Score=139.20 Aligned_cols=117 Identities=22% Similarity=0.369 Sum_probs=88.9
Q ss_pred HHHHHHHHhhCCCC---CCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc
Q 036725 189 DAYIEELASVIPMD---SGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~---~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~ 261 (392)
...++.+++.+... .....+|||||||+|.++..|+++ .|+++|+++.++..+.. .+.+.++ +.+.++.++.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~ 177 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADA 177 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCc
Confidence 34566666666541 122348999999999999999875 78999887765554433 3344454 3455555555
Q ss_pred -cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 262 -KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 -~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+|+++++||+|++..+++|+. +...+++++.|+|||||.|+++.
T Consensus 178 ~~~~~~~~~FD~V~s~~~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 178 LNQPFEDGQFDLVWSMESGEHMP-DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ccCCCCCCCccEEEECCchhccC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 8899999999999999998886 88999999999999999999975
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.49 E-value=4e-14 Score=130.62 Aligned_cols=105 Identities=22% Similarity=0.309 Sum_probs=84.2
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
.+|||||||.|.++..|++. .|+++|+++..+..++. .|.+.++...+......++-...++||+|+|..+++|.+
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~-ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~- 138 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKL-HALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP- 138 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHH-hhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC-
Confidence 38999999999999999998 88999888776666554 455566543333333336655558999999999999998
Q ss_pred ChHHHHHHHHHhccCCeEEEEEcCCCchh
Q 036725 285 NDGMYMMEIDRVLRPGGYWVLSGPLINWR 313 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl~~p~~~~~ 313 (392)
+++.+++++.+.+||||.++++++..++.
T Consensus 139 dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 139 DPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred CHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 99999999999999999999999877653
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.49 E-value=2.9e-13 Score=132.60 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=80.7
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||||||+|.++..|++. .|+++|+++.++..+... +...+. ..+.+..++. .+++++++||+|++..+++|+
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence 48999999999999999876 688998877655544432 222221 2445555554 788888999999999999888
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
. ++..+++++.|+|||||.++++.....
T Consensus 212 ~-d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 212 A-NPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred C-CHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 7 899999999999999999999876553
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.49 E-value=1.3e-13 Score=131.70 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=84.6
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~-~l 263 (392)
...+.+++.+...++. +|||||||+|..+..|++. .|+++|+++. +++.|+++. .+.+.++..+. ..
T Consensus 39 ~~~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~-----~~~~a~~~~~~~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 39 EATTKILSDIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHGVDICEK-----MVNIAKLRNSDKNKIEFEANDILKK 111 (263)
T ss_pred HHHHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEEEECCHH-----HHHHHHHHcCcCCceEEEECCcccC
Confidence 3466677777655554 8999999999999888764 6888877654 444444432 23455555555 78
Q ss_pred CCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 264 PYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
|+++++||+|++..+++|+.. +...+++++.++|||||+|+++.+
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 899999999999888877753 668999999999999999999864
No 11
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=2.9e-13 Score=128.17 Aligned_cols=113 Identities=22% Similarity=0.402 Sum_probs=84.9
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS 267 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d 267 (392)
...+.+++.++... ..+|||+|||+|.++..|++. .++++|+++ .+++.++++.....+...+...+|+++
T Consensus 29 ~~a~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~-----~~l~~a~~~~~~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 29 QSADALLAMLPQRK--FTHVLDAGCGPGWMSRYWRERGSQVTALDLSP-----PMLAQARQKDAADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHHHhcCccC--CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCCCEEEcCcccCcCCC
Confidence 34456666666433 348999999999999988876 788887765 456666665432223333344789999
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|+++.++ +|..++..++.++.|+|||||+++++.+..
T Consensus 102 ~~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 102 ATFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CcEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999998776 677789999999999999999999987554
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.45 E-value=1.7e-13 Score=119.78 Aligned_cols=93 Identities=30% Similarity=0.604 Sum_probs=72.8
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
.+|||||||+|.++..|++. .++++|+++.++.. . ............+.++++||+|+|..+++|..
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------R--NVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------T--TSEEEEEECHTHHCHSSSEEEEEEESSGGGSS-
T ss_pred CEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------h--hhhhhhhhhhhhhccccchhhHhhHHHHhhcc-
Confidence 38999999999999999887 78888886643333 1 12222222224456789999999999997777
Q ss_pred ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 285 NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++..+|+++.++|||||+++++.+..
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 89999999999999999999998765
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.44 E-value=7.8e-13 Score=109.00 Aligned_cols=101 Identities=26% Similarity=0.315 Sum_probs=77.5
Q ss_pred ceEEEECCcCchHHHHHhh--C--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecc-ccc
Q 036725 207 RTALDTGCGVASWGAYLFK--K--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSR-CLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~--~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~-~l~ 280 (392)
.+|||||||+|.++..+++ . +++++|+++.++..++.+.......+.+.++.++. ...-..+.||+|++.. +++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 82 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLH 82 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCccc
Confidence 3899999999999999998 3 89999998877776665554444446777777776 3333356699999988 444
Q ss_pred ccc--cChHHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWS--ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~--~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++. ++...+++++.+.|+|||+++++.
T Consensus 83 ~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 83 FLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 333 245789999999999999999975
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.43 E-value=1.5e-12 Score=121.48 Aligned_cols=116 Identities=24% Similarity=0.382 Sum_probs=86.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
..+.+.+++.+....+. +|||+|||+|.++..+++. .++++|+++.++..+... ....+.+.+.++.++. .
T Consensus 31 ~~~~~~~l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 31 KKWRKDTMKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQK-VKDAGLHNVELVHGNAME 107 (231)
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHhcCCCceEEEEechhc
Confidence 34456666666655544 8999999999999988764 689998877655444432 2334455555555555 7
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++++++||+|++..++++.. +...+++++.|+|||||++++..+
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGLRNVP-DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCCCccEEEEecccccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 788889999999988775544 888999999999999999998653
No 15
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.42 E-value=1.2e-12 Score=121.10 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=87.6
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----------CcEEEeCCccChHHHHHHHHHHcCC---CcEEEE
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----------NVITMSFAPRDSHEAQVQFALERGV---PAVIGV 257 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----------~v~~vd~s~~d~~~a~~~~a~~rg~---~~~~~~ 257 (392)
+-+.+...+....+ .++||++||||..+..+.+. +|+++|+++.++..+.. .++++++ +....+
T Consensus 88 WKd~~v~~L~p~~~--m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq-Ra~~~~l~~~~~~~w~ 164 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKG--MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ-RAKKRPLKASSRVEWV 164 (296)
T ss_pred HHHHhhhccCCCCC--CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH-HHhhcCCCcCCceEEE
Confidence 34555555654444 48999999999999888764 68999999988777554 4444554 224555
Q ss_pred ecc-ccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 258 LGT-IKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 258 ~~~-~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.++ .+|||++++||+.++.+.+..+. ++++.|+|++|||||||+|.+-
T Consensus 165 ~~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 165 EGDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred eCCcccCCCCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEE
Confidence 544 49999999999999999888887 9999999999999999999874
No 16
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.41 E-value=1.6e-12 Score=119.01 Aligned_cols=97 Identities=19% Similarity=0.334 Sum_probs=73.3
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||+|||+|.++..|+++ .|+++|+++.++..+.. .+...++..+.....+. .+++ +++||+|+++.++++..+
T Consensus 33 ~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~ 110 (197)
T PRK11207 33 KTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLER-IKAAENLDNLHTAVVDLNNLTF-DGEYDFILSTVVLMFLEA 110 (197)
T ss_pred cEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHHcCCCcceEEecChhhCCc-CCCcCEEEEecchhhCCH
Confidence 8999999999999999987 78999998876665443 34445555444444444 5566 467999999988755442
Q ss_pred -ChHHHHHHHHHhccCCeEEEEE
Q 036725 285 -NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 285 -d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+...++.++.|+|||||++++.
T Consensus 111 ~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 111 KTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEE
Confidence 3478999999999999997653
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=1e-12 Score=124.88 Aligned_cols=102 Identities=20% Similarity=0.124 Sum_probs=78.6
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC-CCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL-PYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l-p~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..|+++ .|+++|+++.++..++. .+.+.++ +.+.++.++. .+ ++++++||+|++..++++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~ 124 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEW 124 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHh
Confidence 48999999999999999987 78999888766655443 3334444 3455555554 44 466789999999988865
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+. ++..++.++.|+|||||++++...+.
T Consensus 125 ~~-~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 125 VA-DPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred hC-CHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 54 88999999999999999999865443
No 18
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=1.7e-12 Score=123.40 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=79.6
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~ 266 (392)
...+++.+....+ .+|||||||+|.++..|+++ .++++|+++ .+++.|+++++ .++.++. .++ +
T Consensus 18 ~~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~-----~~~~~a~~~~~---~~~~~d~~~~~-~ 86 (255)
T PRK14103 18 FYDLLARVGAERA--RRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP-----EMVAAARERGV---DARTGDVRDWK-P 86 (255)
T ss_pred HHHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHhcCC---cEEEcChhhCC-C
Confidence 4556666664444 38999999999999999875 688887765 45666666553 2334444 554 5
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+++||+|+++.++++. +++..+++++.++|||||++++..+.
T Consensus 87 ~~~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 87 KPDTDVVVSNAALQWV-PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CCCceEEEEehhhhhC-CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 7899999999888554 58899999999999999999997643
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.40 E-value=2.4e-12 Score=126.49 Aligned_cols=111 Identities=21% Similarity=0.167 Sum_probs=80.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-cCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~lp~~ 266 (392)
.+.+...++...+ ++|||||||+|.++..+++. .|+|+|.++.++....... ...+ ...+.++..+. .+|+
T Consensus 111 ~~~l~~~l~~l~g--~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~-~~~~~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 111 WDRVLPHLSPLKG--RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVR-KLLGNDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHHhhCCCCC--CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHH-HhcCCCCCeEEEeCCHHHCCC-
Confidence 3455555553334 48999999999999999876 4899988775543321111 1111 23444555554 7888
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++||+|+|..+++|.. ++..+|++++++|||||.++++.
T Consensus 187 ~~~FD~V~s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRR-SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cCCcCEEEECChhhccC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 88999999998987765 88999999999999999999864
No 20
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.38 E-value=3.3e-12 Score=116.74 Aligned_cols=97 Identities=18% Similarity=0.283 Sum_probs=71.3
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccccc-
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSA- 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~- 284 (392)
+|||+|||+|.++..|+++ .|+++|+++.++..+.. .+.+.+++......+....++ +++||+|+++.+++++..
T Consensus 33 ~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~ 110 (195)
T TIGR00477 33 KTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMFLQAG 110 (195)
T ss_pred cEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhccc-cCCCCEEEEecccccCCHH
Confidence 8999999999999999987 79999998766655443 444556553322333224455 467999999988866643
Q ss_pred ChHHHHHHHHHhccCCeEEEEE
Q 036725 285 NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+...+++++.|+|||||++++.
T Consensus 111 ~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 111 RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHhCCCcEEEEE
Confidence 3478999999999999996654
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.38 E-value=2.3e-12 Score=112.66 Aligned_cols=100 Identities=27% Similarity=0.409 Sum_probs=79.1
Q ss_pred ceEEEECCcCchHHHHHhh-C----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CCCCccceEEeccc
Q 036725 207 RTALDTGCGVASWGAYLFK-K----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YPSRAFDMAHCSRC 278 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~-~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~d~sFDlV~~~~~ 278 (392)
.+|||+|||+|.++..|++ . +++++|+++.++..+.. .+++.+.+++.+..++. +++ ++ +.||+|++..+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 4899999999999999993 2 79999888766655443 44556777777777776 666 55 89999999988
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+++.. +...+++++.++|++||.+++..+.
T Consensus 83 l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHFP-DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGGTS-HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhcc-CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 85554 8889999999999999999998654
No 22
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.37 E-value=6.7e-12 Score=116.83 Aligned_cols=98 Identities=26% Similarity=0.354 Sum_probs=76.4
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..+++. .++++|+++ .+++.++++..+.+.++.++. .+++++++||+|++..++++
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA-----GMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQW 110 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH-----HHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhh
Confidence 48999999999999999876 468886654 455555554433444455554 78888999999999988854
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..++..++.++.++|+|||.+++..+..
T Consensus 111 -~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 111 -CDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred -ccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 4588999999999999999999987655
No 23
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.37 E-value=2.9e-12 Score=115.07 Aligned_cols=107 Identities=28% Similarity=0.377 Sum_probs=81.7
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC-CCCCCcc
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL-PYPSRAF 270 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l-p~~d~sF 270 (392)
+.|+++++ +++ +|||+|||.|.+..+|.+. ++.+..+ +++.+.+..+.++|++.+....+. .| .|++++|
T Consensus 5 ~~I~~~I~--pgs--rVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sF 76 (193)
T PF07021_consen 5 QIIAEWIE--PGS--RVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSF 76 (193)
T ss_pred HHHHHHcC--CCC--EEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCc
Confidence 44566665 444 8999999999999999985 5554444 556667888889998765333333 44 4899999
Q ss_pred ceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 271 DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 271 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
|.|+++.++.+.. +++.+|.|+.|+ |...+++-|+..
T Consensus 77 D~VIlsqtLQ~~~-~P~~vL~EmlRV---gr~~IVsFPNFg 113 (193)
T PF07021_consen 77 DYVILSQTLQAVR-RPDEVLEEMLRV---GRRAIVSFPNFG 113 (193)
T ss_pred cEEehHhHHHhHh-HHHHHHHHHHHh---cCeEEEEecChH
Confidence 9999999997776 899999999777 668888888773
No 24
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.36 E-value=6.5e-12 Score=122.61 Aligned_cols=110 Identities=17% Similarity=0.089 Sum_probs=77.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc-C-CCcEEEEeccc-cCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER-G-VPAVIGVLGTI-KLPY 265 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r-g-~~~~~~~~~~~-~lp~ 265 (392)
.+.+...+....+ ++|||||||+|.++..++.. .|+|+|.++.++... +.+++. + ...+.+...+. .+|.
T Consensus 110 ~~~~l~~l~~~~g--~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~~~~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 110 WDRVLPHLSPLKG--RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLDNDKRAILEPLGIEQLHE 185 (314)
T ss_pred HHHHHHhcCCCCC--CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhccCCCeEEEECCHHHCCC
Confidence 3455555554444 48999999999999888776 478888776554332 122221 1 12333333333 6775
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. .+||+|+|..+++|+. ++..+|++++|+|||||.|++..
T Consensus 186 ~-~~FD~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 186 L-YAFDTVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred C-CCcCEEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 5899999999998876 88999999999999999999864
No 25
>PRK05785 hypothetical protein; Provisional
Probab=99.35 E-value=4.9e-12 Score=118.29 Aligned_cols=86 Identities=22% Similarity=0.247 Sum_probs=67.6
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
.+|||||||+|.++..|+++ .++++|+++. |++.|+++. . ..+.+...+|+++++||+|+++.+++++.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~-----Ml~~a~~~~-~--~~~~d~~~lp~~d~sfD~v~~~~~l~~~~ 124 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVALDYAEN-----MLKMNLVAD-D--KVVGSFEALPFRDKSFDVVMSSFALHASD 124 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHH-----HHHHHHhcc-c--eEEechhhCCCCCCCEEEEEecChhhccC
Confidence 38999999999999999876 6788866554 555555543 1 22334448999999999999999886655
Q ss_pred cChHHHHHHHHHhccCCe
Q 036725 284 ANDGMYMMEIDRVLRPGG 301 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG 301 (392)
+++.+++|+.|+|||.+
T Consensus 125 -d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 -NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CHHHHHHHHHHHhcCce
Confidence 89999999999999954
No 26
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.35 E-value=8.4e-12 Score=117.41 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=72.4
Q ss_pred ceEEEECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-cCCCCCCccceEEeccc
Q 036725 207 RTALDTGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-KLPYPSRAFDMAHCSRC 278 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~lp~~d~sFDlV~~~~~ 278 (392)
.+|||+|||+|.++..++++ .++++|+++.++..+..+. .+.+ ...+.++.++. .++++ .+|+|++..+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI-AAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHH-HhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 38999999999999888763 5899988776655544332 2222 22345555555 66664 4899999988
Q ss_pred cccccc-ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 279 LIPWSA-NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 279 l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++++.+ +...+++++.|+|||||.|+++.+
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 866642 347899999999999999999864
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.35 E-value=1.1e-11 Score=115.13 Aligned_cols=113 Identities=29% Similarity=0.411 Sum_probs=85.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHc---CCCcEEEEecc
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALER---GVPAVIGVLGT 260 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~r---g~~~~~~~~~~ 260 (392)
..+.+.+.+.+....+. +|||+|||+|.++..+++. .++++|+++..+ +.++++ ..+.+.+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-----~~a~~~~~~~~~~~~~~~~d 77 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-----ALAKERAAGLGPNVEFVRGD 77 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-----HHHHHHhhCCCCceEEEecc
Confidence 45566677777655544 8999999999999988764 588888766433 333332 23445555555
Q ss_pred c-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 261 I-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 261 ~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
. .+++++++||+|++..+++++. ++..+++++.++|||||++++..+.
T Consensus 78 ~~~~~~~~~~~D~v~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 78 ADGLPFPDGSFDAVRSDRVLQHLE-DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred cccCCCCCCCceEEEEechhhccC-CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 4 6788889999999999887766 8899999999999999999997653
No 28
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.34 E-value=3.8e-12 Score=122.14 Aligned_cols=120 Identities=26% Similarity=0.436 Sum_probs=81.7
Q ss_pred ecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHH----Hc
Q 036725 177 FPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFAL----ER 249 (392)
Q Consensus 177 fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~----~r 249 (392)
|+.+...+.......++.+.+.+...+|. +|||||||.|.++.+++++ +|+++++ ++.|.+.++ ++
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitl-----S~~Q~~~a~~~~~~~ 108 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITL-----SEEQAEYARERIREA 108 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES------HHHHHHHHHHHHCS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEEC-----CHHHHHHHHHHHHhc
Confidence 44444334444556788888998887776 9999999999999999998 5666655 445555554 45
Q ss_pred CCC-cEEEEeccc-cCCCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEE
Q 036725 250 GVP-AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 250 g~~-~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
|++ .+.+...+. +++ .+||.|++..+++|... +...+++++.++|||||.+++.
T Consensus 109 gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 109 GLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp TSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 654 345555554 443 38999999999999863 4589999999999999999874
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.34 E-value=6.2e-12 Score=119.47 Aligned_cols=109 Identities=22% Similarity=0.375 Sum_probs=80.2
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
....++..+....+ .+|||||||+|.++..++++ .++++|+++. +++.++++. +.+.+..++. .++
T Consensus 19 ~~~~ll~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~-----~i~~a~~~~-~~~~~~~~d~~~~~- 89 (258)
T PRK01683 19 PARDLLARVPLENP--RYVVDLGCGPGNSTELLVERWPAARITGIDSSPA-----MLAEARSRL-PDCQFVEADIASWQ- 89 (258)
T ss_pred HHHHHHhhCCCcCC--CEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHhC-CCCeEEECchhccC-
Confidence 34455556654444 38999999999999999874 6888877654 555565553 3344455554 443
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++++||+|+++.+++ |..+...+++++.++|||||.+++..+.
T Consensus 90 ~~~~fD~v~~~~~l~-~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 90 PPQALDLIFANASLQ-WLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCCCccEEEEccChh-hCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 467999999998884 5558899999999999999999997654
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=9.2e-12 Score=128.64 Aligned_cols=112 Identities=21% Similarity=0.355 Sum_probs=81.6
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPS 267 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d 267 (392)
.+.+++.+....+ .+|||||||+|.++..|++. .++++|+++.++..+..+ +.... ..+.+...+. .+++++
T Consensus 255 te~l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~-~~v~~~~~d~~~~~~~~ 330 (475)
T PLN02336 255 TKEFVDKLDLKPG--QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRK-CSVEFEVADCTKKTYPD 330 (475)
T ss_pred HHHHHHhcCCCCC--CEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCC-CceEEEEcCcccCCCCC
Confidence 3445555554333 48999999999999888875 688998876544433221 11111 2344555554 778888
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++||+|+|..+++|+. ++..+++++.|+|||||.+++..+
T Consensus 331 ~~fD~I~s~~~l~h~~-d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 331 NSFDVIYSRDTILHIQ-DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCEEEEEECCcccccC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999987776 889999999999999999999754
No 31
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.33 E-value=5.3e-13 Score=108.02 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=56.6
Q ss_pred EEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC--CCCCCccceEEecccccccc
Q 036725 210 LDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL--PYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 210 LDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l--p~~d~sFDlV~~~~~l~~~~ 283 (392)
||||||+|.++..++++ +++++|+++.++..+..+................... ....++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999888776 7899999998875544444433322222222222222 2223699999999999777
Q ss_pred cChHHHHHHHHHhccCCeEE
Q 036725 284 ANDGMYMMEIDRVLRPGGYW 303 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~l 303 (392)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 58899999999999999986
No 32
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.33 E-value=3.3e-11 Score=109.40 Aligned_cols=114 Identities=21% Similarity=0.188 Sum_probs=83.7
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|..+..++.+ .|+++|.++.++..+. +.+++.+++.+.+..++. .++. +++||+|++..
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~-~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~---- 120 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR-EVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA---- 120 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----
Confidence 48999999999999888753 7999988876665544 344556666566666665 6665 77999999864
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCceec
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKK 345 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~ 345 (392)
+ .+...+++++.++|||||++++..+.. ....++++++.+.|...
T Consensus 121 ~-~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 121 V-ASLSDLVELCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred c-cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEe
Confidence 2 266789999999999999999975432 11336677777788643
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.32 E-value=5.2e-12 Score=119.58 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=73.5
Q ss_pred ceEEEECCcCchHHHHHhh------CCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFK------KNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~------~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l 279 (392)
.+|||||||+|..+..+++ ..++++|+++.++..+..+.........+.++.++. .+|++ .+|+|+++.++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHH
Confidence 3899999999999888775 179999888877666655443322223455555555 66664 48999999888
Q ss_pred cccccC-hHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSAN-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++..++ ...+++++.|+|||||.|+++.
T Consensus 136 ~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 136 QFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 666532 2689999999999999999975
No 34
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=9.8e-12 Score=118.43 Aligned_cols=127 Identities=19% Similarity=0.288 Sum_probs=93.9
Q ss_pred EecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC
Q 036725 176 RFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP 252 (392)
Q Consensus 176 ~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~ 252 (392)
.|++....+.......++.+.+.+.+.+|. +|||||||.|.++.+++++ +|+|+++|+.....++ +.++++|++
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~~~~gl~ 121 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRIAARGLE 121 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHHHHcCCC
Confidence 666666555555566788899999988887 9999999999999999998 6777766654333322 234456766
Q ss_pred -cEEEEeccccCCCCCCccceEEecccccccccC-hHHHHHHHHHhccCCeEEEEEc
Q 036725 253 -AVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 253 -~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.+...+.+. ..+.||-|++..+++|+... ...+++.++++|+|||.+++-+
T Consensus 122 ~~v~v~l~d~rd--~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 122 DNVEVRLQDYRD--FEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred cccEEEeccccc--cccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 44444444422 23449999999999998743 4899999999999999999843
No 35
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.31 E-value=1.6e-11 Score=120.84 Aligned_cols=113 Identities=20% Similarity=0.281 Sum_probs=81.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~ 262 (392)
+...+.+++.+..... ..+|||||||+|.++..+++. .++++|+++.++.. |+++. ...+.++.++. .
T Consensus 98 e~~r~~~l~~~~l~~~-~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~-----A~~k~~~~~i~~i~gD~e~ 171 (340)
T PLN02490 98 EDMRDDALEPADLSDR-NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-----AKQKEPLKECKIIEGDAED 171 (340)
T ss_pred HHHHHHHHhhcccCCC-CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHhhhccCCeEEeccHHh
Confidence 4444555554443222 238999999999998888763 68888876654443 33321 22334455555 7
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++++++||+|++..+++++. +...+|+++.|+|||||.+++..+
T Consensus 172 lp~~~~sFDvVIs~~~L~~~~-d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 172 LPFPTDYADRYVSAGSIEYWP-DPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCCCCCceeEEEEcChhhhCC-CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 899999999999998887766 888999999999999999988754
No 36
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=1.8e-11 Score=109.99 Aligned_cols=102 Identities=21% Similarity=0.290 Sum_probs=77.7
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCccceEEeccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sFDlV~~~~~l~~~ 282 (392)
.||+||||+|..-.+.... .|+++|-++.+-..+...++.++......++.+.. .+| .+++|+|.|+|..++-..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv 158 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSV 158 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEecc
Confidence 5899999999887777643 78888777765555544444444444443555554 787 789999999999998655
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. ++.+.|+|+.|+|||||.+++..+..
T Consensus 159 e-~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 159 E-DPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred C-CHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 4 99999999999999999999965433
No 37
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.30 E-value=1.8e-11 Score=117.24 Aligned_cols=99 Identities=26% Similarity=0.303 Sum_probs=75.5
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~ 280 (392)
.+|||+|||+|..+..+++. .++++|+++.++..+.. .....+.+.+.+..++. .+|+++++||+|+++.+++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~-~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA-NARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH-HHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 39999999999877665543 48899887765554433 33345556666666665 7888889999999987775
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++ .+...+++++.|+|||||+|+++.
T Consensus 158 ~~-~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 158 LS-PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CC-CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 44 488899999999999999999975
No 38
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.28 E-value=9e-12 Score=112.18 Aligned_cols=100 Identities=23% Similarity=0.356 Sum_probs=72.7
Q ss_pred CCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccccCCCCCCccceEEeccc
Q 036725 203 SGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTIKLPYPSRAFDMAHCSRC 278 (392)
Q Consensus 203 ~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~~lp~~d~sFDlV~~~~~ 278 (392)
.+..+++||+|||.|.++..|+.+ .++++|+++ ..++.|++| +.+.+.+...+..-..|+++||+|+++.+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~-----~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISP-----RALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEV 115 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-H-----HHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCH-----HHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehH
Confidence 444568999999999999999998 899997755 466666654 45777777777755678999999999998
Q ss_pred cccccc--ChHHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSA--NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+..+.+ +...++..+...|+|||.+++.+
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 866652 23678999999999999999965
No 39
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.26 E-value=4e-11 Score=108.75 Aligned_cols=109 Identities=19% Similarity=0.351 Sum_probs=78.7
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccce
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDM 272 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDl 272 (392)
+.+.++..++. ++||+|||.|..+.+|+++ .|+++|.++..+.. ..+.|.+.+++....+.+.....++ +.||+
T Consensus 22 v~~a~~~~~~g--~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 22 VLEAVPLLKPG--KALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHCTTS-SS--EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHhhcCCC--cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCE
Confidence 34444443333 8999999999999999999 79999998866655 4557778888855555554455554 67999
Q ss_pred EEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 273 AHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 273 V~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|++..++.+...+. ..++..+...++|||++++..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 99987776665444 689999999999999998853
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.25 E-value=3.2e-11 Score=116.68 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=72.4
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||+|||+|.++.+|+++ .|+++|+++.++..+. +.+.+.++. +.....+. ..++ +++||+|++..++++...
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~-v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLN-IRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCc-eEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 7999999999999999887 7899988876655433 345556663 33333333 4444 788999999988866542
Q ss_pred -ChHHHHHHHHHhccCCeEEEEEc
Q 036725 285 -NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 285 -d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+...+++++.|+|+|||++++..
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34789999999999999977643
No 41
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.25 E-value=4e-11 Score=120.94 Aligned_cols=125 Identities=26% Similarity=0.492 Sum_probs=97.5
Q ss_pred CCCCCcceEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cCCCCCCccceEEeccc
Q 036725 201 MDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KLPYPSRAFDMAHCSRC 278 (392)
Q Consensus 201 ~~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~lp~~d~sFDlV~~~~~ 278 (392)
...+..|+|+|+.+|.|.|+++|.+..|.+|-+.+. ...+......+||+ +.+..+. .++.-+++||+||+...
T Consensus 361 i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 361 IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred ccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhccc---chhccchhhccCCCCcchhheehhhh
Confidence 457788999999999999999999999999988775 45556667788886 4444454 56656899999999987
Q ss_pred cccccc--ChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCceecce
Q 036725 279 LIPWSA--NDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHE 347 (392)
Q Consensus 279 l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~~~ 347 (392)
+..+.. +...+|.||+|+|||||++|+-.. .+...+++.+++.|.|+....
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~------------------~~vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDT------------------VDVLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEecc------------------HHHHHHHHHHHHhCcceEEEE
Confidence 766542 337899999999999999999531 123456888999999986543
No 42
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.24 E-value=5.6e-12 Score=102.56 Aligned_cols=92 Identities=30% Similarity=0.498 Sum_probs=63.8
Q ss_pred EEEECCcCchHHHHHhhC-------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccc-cc
Q 036725 209 ALDTGCGVASWGAYLFKK-------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRC-LI 280 (392)
Q Consensus 209 VLDiGCG~G~~~~~L~~~-------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~-l~ 280 (392)
|||+|||+|..+..+.+. .++++|+++.++..+..+. .+.+.+..+.+.+...+++.+++||+|+|... ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~-~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRF-SEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHS-HHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhc-hhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999888753 6788877665544433322 22345555555555588888999999999655 66
Q ss_pred ccccCh-HHHHHHHHHhccCCe
Q 036725 281 PWSAND-GMYMMEIDRVLRPGG 301 (392)
Q Consensus 281 ~~~~d~-~~~L~ei~RvLkPGG 301 (392)
|+.++. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 655333 789999999999998
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.24 E-value=2.9e-11 Score=112.35 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=72.8
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
+|||||||+|.++..+++. .++++|+++..+..+.. ...+.++ ..+.+...+. ..|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~-~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRE-RIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 7999999999999988864 57888886654443333 2233343 2344444444 55664 58999999988877
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+. +...+++++.++|||||++++..+
T Consensus 80 ~~-~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IK-DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CC-CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 75 788999999999999999999764
No 44
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.19 E-value=2.5e-10 Score=95.22 Aligned_cols=111 Identities=22% Similarity=0.118 Sum_probs=76.8
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc--C
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK--L 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~--l 263 (392)
.....+.+.+....+. +|||+|||+|.++..++++ .++++|+++..+..+.. .+...+.+.+.++.++.. +
T Consensus 6 ~~~~~~~~~~~~~~~~--~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 6 EVRALTLSKLRLRPGD--VLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIER-NARRFGVSNIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHH-HHHHhCCCceEEEeccccccC
Confidence 3445555666543443 8999999999999999875 68899887755554433 333445555555555542 3
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+...++||.|++..... ....+++++.++|||||+|++..
T Consensus 83 ~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhhcCCCCEEEECCcch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 33346899999875432 34689999999999999999964
No 45
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.19 E-value=3.2e-10 Score=101.35 Aligned_cols=117 Identities=24% Similarity=0.275 Sum_probs=78.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+.-...|++.+..... .+|||+|||+|.++..++++ .++++|+++..+..+ .+.+...++..+.++..+...+
T Consensus 17 d~~t~lL~~~l~~~~~--~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a-~~n~~~n~~~~v~~~~~d~~~~ 93 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKG--GRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELA-KRNAERNGLENVEVVQSDLFEA 93 (170)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHH-HHHHHHTTCTTEEEEESSTTTT
T ss_pred CHHHHHHHHHHhhccC--CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHH-HHHHHhcCcccccccccccccc
Confidence 3333444444442222 38999999999999999987 489998887544443 3344455666566666666445
Q ss_pred CCCCccceEEeccccccccc----ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 265 YPSRAFDMAHCSRCLIPWSA----NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~----d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.++++||+|+++.-++.-.. -...++.+..+.|||||.+++...
T Consensus 94 ~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 94 LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 55899999999864422221 126789999999999999988653
No 46
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.19 E-value=2.3e-10 Score=110.84 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=68.1
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccccCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...++.. +.....+ ..+..+++||+|+++...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~-n~~~n~~~~~~~~~~~~-~~~~~~~~fDlVvan~~~--- 235 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK-NAELNQVSDRLQVKLIY-LEQPIEGKADVIVANILA--- 235 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCCCcceEEEecc-cccccCCCceEEEEecCH---
Confidence 48999999999999888765 68999998866655444 333444432 2223222 233446799999997432
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.....++.++.++|||||++++++.
T Consensus 236 -~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 -EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1335789999999999999999863
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.17 E-value=1.2e-10 Score=106.90 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=74.9
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cCC--CCCCccceEEeccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KLP--YPSRAFDMAHCSRC 278 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~lp--~~d~sFDlV~~~~~ 278 (392)
.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+.+++.++.++. .++ +++++||+|++...
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALK-KIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHH-HHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 38999999999999988764 68999988866655443 33334555555566554 455 77889999998754
Q ss_pred cccccc--------ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 279 LIPWSA--------NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 279 l~~~~~--------d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. +|.. ....+++++.++|||||+|+++.+..
T Consensus 121 ~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 121 D-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred C-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 3 4432 13678999999999999999986544
No 48
>PRK06922 hypothetical protein; Provisional
Probab=99.17 E-value=9.5e-11 Score=122.61 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=73.2
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~d~sFDlV~~~~~l~ 280 (392)
+|||+|||+|.++..++++ .++++|+++.++..+..+. ...+. ...++.++. .+| +++++||+|+++.+++
T Consensus 421 rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 421 TIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGR-SWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred EEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCC-CeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 8999999999998888764 7899988776555544322 22233 233344444 677 8899999999998886
Q ss_pred ccc------------cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 281 PWS------------ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 281 ~~~------------~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++. .+...+|+++.|+|||||.+++...
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 552 2347899999999999999999753
No 49
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.16 E-value=3.2e-10 Score=105.65 Aligned_cols=114 Identities=23% Similarity=0.298 Sum_probs=79.4
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP 264 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp 264 (392)
....+...+...++ .+|||+|||+|.++..+++. +++++|+++..+..+..+.........+.+...+. .++
T Consensus 39 ~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 39 WRRKTIKWLGVRPG--DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHHHhCCCCC--CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 44455555544333 38999999999999888753 68888887654444333222211123344454554 667
Q ss_pred CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 265 YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++.++||+|+++.+++++. +...+|.++.++|+|||++++..
T Consensus 117 ~~~~~~D~I~~~~~l~~~~-~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVP-DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred CCCCCccEEEEecccccCC-CHHHHHHHHHHhccCCcEEEEEE
Confidence 7778999999998886665 88899999999999999998864
No 50
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.16 E-value=6.4e-11 Score=107.30 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=83.6
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSR 268 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~ 268 (392)
..++..++.... ++|.|+|||+|..+..|+++ .++|+|- +.+|+..|+++.+ +..+..++.+-=-|+.
T Consensus 20 ~dLla~Vp~~~~--~~v~DLGCGpGnsTelL~~RwP~A~i~GiDs-----S~~Mla~Aa~rlp-~~~f~~aDl~~w~p~~ 91 (257)
T COG4106 20 RDLLARVPLERP--RRVVDLGCGPGNSTELLARRWPDAVITGIDS-----SPAMLAKAAQRLP-DATFEEADLRTWKPEQ 91 (257)
T ss_pred HHHHhhCCcccc--ceeeecCCCCCHHHHHHHHhCCCCeEeeccC-----CHHHHHHHHHhCC-CCceecccHhhcCCCC
Confidence 345556664443 48999999999999999998 6677754 5567777777764 4445555553334678
Q ss_pred ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.+|+++++.++ +|.+|...+|..+...|.|||.+.+-.|..
T Consensus 92 ~~dllfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 92 PTDLLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred ccchhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 89999999877 898899999999999999999999987654
No 51
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.16 E-value=1.5e-10 Score=107.26 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=70.2
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC---------------cEEEEeccc-cCCCC-CC
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP---------------AVIGVLGTI-KLPYP-SR 268 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~---------------~~~~~~~~~-~lp~~-d~ 268 (392)
+|||+|||.|..+.+|+++ .|+++|+++..+..+ +.+.++. .+.+..++. .++.. .+
T Consensus 37 rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 37 RVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQF----FAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred eEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHH----HHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 8999999999999999998 899998887655432 2333321 233344443 55432 45
Q ss_pred ccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.||.|+...+++|+.++. ..++..+.++|||||++++.+
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 799999887888886555 679999999999999866653
No 52
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.9e-10 Score=109.26 Aligned_cols=97 Identities=29% Similarity=0.426 Sum_probs=69.9
Q ss_pred CcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC-CccceEEeccccc
Q 036725 205 MVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS-RAFDMAHCSRCLI 280 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d-~sFDlV~~~~~l~ 280 (392)
.+++|||+|||+|.++...++. .++++|+++..+..++. .++.++++..........+..+. +.||+|+++- |
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e-Na~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE-NARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH-HHHHcCCchhhhcccccchhhcccCcccEEEehh-h-
Confidence 3459999999999999888876 69999998876555443 55566665422222222333344 5999999984 2
Q ss_pred ccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ++ ..+..++.+.|||||++++++
T Consensus 239 --A-~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 239 --A-EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred --H-HHHHHHHHHHHHHcCCCceEEEEe
Confidence 1 33 578899999999999999997
No 53
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.15 E-value=2.2e-10 Score=105.46 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=68.4
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||||||+|.++..|++. .++++|+++ .+++.|+++. +.+.+..++..-|+++++||+|++..+++|+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~-----~~l~~A~~~~-~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINE-----YAVEKAKAYL-PNINIIQGSLFDPFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHhhC-CCCcEEEeeccCCCCCCCEEEEEECChhhhC
Confidence 37999999999999988764 578886655 4666666543 2233344444238889999999999999887
Q ss_pred ccC-hHHHHHHHHHhccCCeEEEEEc
Q 036725 283 SAN-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 283 ~~d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.++ ...+++++.|++ ++++++..
T Consensus 119 ~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 119 NPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 633 378999999998 46777754
No 54
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.15 E-value=3.5e-10 Score=104.11 Aligned_cols=108 Identities=19% Similarity=0.125 Sum_probs=74.4
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-c
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-K 262 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~ 262 (392)
.....+.+.+...++. +|||+|||+|..+..+++. .|+++|+++.....+.. ...+.+.. .+.+..++. .
T Consensus 59 ~~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~-~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 59 HMVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQ-NIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCcEEEEECCccc
Confidence 3456666666644444 8999999999999888753 68999887755544332 33344543 355555555 3
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
......+||+|++..++.+.. .++.++|+|||++++..
T Consensus 136 ~~~~~~~fD~Ii~~~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 136 GLEKHAPFDAIIVTAAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCccCCCccEEEEccCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 333457899999987664433 68889999999999864
No 55
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.15 E-value=7.7e-11 Score=112.71 Aligned_cols=102 Identities=18% Similarity=0.318 Sum_probs=68.5
Q ss_pred cceEEEECCcCch----HHHHHhhC---------CcEEEeCCccChHHHHHHHH---HHcCCC-----------------
Q 036725 206 VRTALDTGCGVAS----WGAYLFKK---------NVITMSFAPRDSHEAQVQFA---LERGVP----------------- 252 (392)
Q Consensus 206 ~~~VLDiGCG~G~----~~~~L~~~---------~v~~vd~s~~d~~~a~~~~a---~~rg~~----------------- 252 (392)
..+|||+|||+|. ++..|++. .|+|+|+++.++..+....- .-++++
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 3589999999994 45555432 57888776654444332110 001111
Q ss_pred ------cEEEEeccc-cCCCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEc
Q 036725 253 ------AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 253 ------~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.+...+. ..++++++||+|+|..+++++.+ +...+++++.++|+|||+|++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 234444444 66667899999999999988763 23689999999999999999953
No 56
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.15 E-value=9.8e-11 Score=121.01 Aligned_cols=112 Identities=20% Similarity=0.283 Sum_probs=81.1
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc---cCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KLPYP 266 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~---~lp~~ 266 (392)
...+.+.++...+. +|||||||+|.++..|++. .++++|+++.++..+.. .....+++.++..+. .+|++
T Consensus 26 ~~~il~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 26 RPEILSLLPPYEGK--SVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hhHHHhhcCccCCC--EEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccCCC
Confidence 34555666543333 8999999999999999986 78999887765543211 112234444454443 57888
Q ss_pred CCccceEEecccccccccC-hHHHHHHHHHhccCCeEEEEEcC
Q 036725 267 SRAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++||+|++..+++++.++ ...+++++.|+|||||++++...
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999999988777633 37899999999999999999653
No 57
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.14 E-value=4.1e-10 Score=101.78 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=70.8
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..++.. .|+++|.++.++..+. +.+++.+++++.++.++. .++ .+++||+|++.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h--
Confidence 38999999999988887643 6999998876554433 344455666666677666 543 367999999864 2
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. +...+++.+.++|||||.+++...
T Consensus 119 -~-~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 -A-SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred -h-CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 556788999999999999999753
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.14 E-value=1.8e-09 Score=97.83 Aligned_cols=112 Identities=15% Similarity=0.049 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL 263 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l 263 (392)
.+.....+.+.+....+. +|||+|||+|.++..++++ +++++|+++..+..++. .+...++..+.+..++...
T Consensus 16 ~~~~r~~~~~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~-n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 16 KEEVRALALSKLELHRAK--HLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKE-NRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred hHHHHHHHHHhcCCCCCC--EEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCeEEEecCchh
Confidence 344445555666544443 8999999999999988764 78999988765554433 3334455555556555544
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++ .++||+|++..... ....++.++.++|+|||++++..
T Consensus 93 ~~-~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 93 EL-PGKADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred hc-CcCCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 44 35799999875432 44678999999999999999864
No 59
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.13 E-value=2.1e-10 Score=104.70 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=75.7
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC---CCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP---YPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp---~~d~sFDlV~~~~~l 279 (392)
++||||||+|.++..++++ +++++|++..++..+.. .+.+.++.++.++.++. .++ +++++||.|+++...
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~-~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pd 97 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANN-KANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPD 97 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCC
Confidence 8999999999999999876 78999988765555443 34455666777777776 433 556799999987543
Q ss_pred cccccCh--------HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 280 IPWSAND--------GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 280 ~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+|.... ..++.++.|+|||||.|++.+...
T Consensus 98 -pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 98 -PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred -cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 554321 478999999999999999976433
No 60
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.13 E-value=2.9e-10 Score=114.34 Aligned_cols=108 Identities=25% Similarity=0.422 Sum_probs=77.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~-~ 262 (392)
...++.+.+.+...++. +|||||||+|.++..++++ .|+++|+++ .+++.|+++. .. +.+...+. .
T Consensus 153 ~~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~giDlS~-----~~l~~A~~~~~~l~-v~~~~~D~~~ 224 (383)
T PRK11705 153 EAKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVGVTISA-----EQQKLAQERCAGLP-VEIRLQDYRD 224 (383)
T ss_pred HHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhccCe-EEEEECchhh
Confidence 34566677777655554 8999999999999999875 577886655 4555555542 22 33333333 3
Q ss_pred CCCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+ +++||.|++..+++|... +...+++++.|+|||||++++..
T Consensus 225 l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 225 L---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred c---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 578999999988877642 34789999999999999999964
No 61
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.13 E-value=5.5e-10 Score=102.96 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=78.6
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI- 261 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~- 261 (392)
.+...+.+.+....+ .+|||+|||+|.++..+++. .++++|+++. +++.+.++. ...+.+..++.
T Consensus 26 ~~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~-----~~~~~~~~~~~~~~i~~~~~d~~ 98 (223)
T TIGR01934 26 LWRRRAVKLIGVFKG--QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE-----MLEVAKKKSELPLNIEFIQADAE 98 (223)
T ss_pred HHHHHHHHHhccCCC--CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH-----HHHHHHHHhccCCCceEEecchh
Confidence 344555555553333 48999999999999988765 5778877553 333443332 22334444544
Q ss_pred cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+++++++||+|+++.++++.. +...+++++.++|+|||++++..
T Consensus 99 ~~~~~~~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 99 ALPFEDNSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred cCCCCCCcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEE
Confidence 7778788999999988876655 88999999999999999999865
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.13 E-value=6.2e-10 Score=111.22 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC---CcEEEEecc
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV---PAVIGVLGT 260 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~---~~~~~~~~~ 260 (392)
.+.-.+.+++.++...+ .+|||+|||+|.++..++++ .|+++|.++.++..++.... ..+. ..+.+..++
T Consensus 213 LD~GtrllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~-~n~~~~~~~v~~~~~D 289 (378)
T PRK15001 213 LDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMINN 289 (378)
T ss_pred cChHHHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCcccCceEEEEEcc
Confidence 34445667777764433 38999999999999999875 78999888765555444332 2232 234445554
Q ss_pred ccCCCCCCccceEEeccccccc---cc-ChHHHHHHHHHhccCCeEEEEEc
Q 036725 261 IKLPYPSRAFDMAHCSRCLIPW---SA-NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 261 ~~lp~~d~sFDlV~~~~~l~~~---~~-d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..-.+++.+||+|+|+..++.- .. ...+++.++.++|+|||.|+++.
T Consensus 290 ~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 290 ALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4223445689999998665322 11 12578999999999999999985
No 63
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.12 E-value=1.1e-10 Score=108.87 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=69.8
Q ss_pred cceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC-C-CcEEEEe--ccccCCCCCCccceEEecccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG-V-PAVIGVL--GTIKLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg-~-~~~~~~~--~~~~lp~~d~sFDlV~~~~~l 279 (392)
+++|||+|||+|.++..|++. .|+|+|++..++..+... +.... . .++.+.. ......--.+.||+|+|+.++
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevl 168 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVL 168 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcccccceeeeHHHH
Confidence 357999999999999999987 778886655444433332 11110 0 0111111 111111113459999999999
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+|.. ++..++.-+.+.|||||.+++++-..
T Consensus 169 eHV~-dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 169 EHVK-DPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHh-CHHHHHHHHHHHhCCCCceEeeehhh
Confidence 9998 99999999999999999999986433
No 64
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.12 E-value=4.9e-10 Score=111.71 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=79.4
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC--CCCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL--PYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l--p~~d~sFDlV~~~~~l~ 280 (392)
.+||||||+|.++..++.+ .++|+|++..++..+.. .+.+.++.++.++.++. .+ .++++++|.|++.+. .
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~-ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP-d 202 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLK-QIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP-V 202 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-C
Confidence 8999999999999999976 79999998866666544 45567788887787776 32 578999999998754 3
Q ss_pred ccccCh------HHHHHHHHHhccCCeEEEEEcCC
Q 036725 281 PWSAND------GMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 281 ~~~~d~------~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+|.... ..++.++.|+|+|||.+.+.+..
T Consensus 203 PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 203 PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 665433 47999999999999999996533
No 65
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.12 E-value=4.7e-10 Score=107.31 Aligned_cols=108 Identities=26% Similarity=0.368 Sum_probs=79.6
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc-CCCc-EEEE-eccccCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER-GVPA-VIGV-LGTIKLPYP 266 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r-g~~~-~~~~-~~~~~lp~~ 266 (392)
+++...++...+ ++|||||||.|+++-.|+.+ .|+|+|-++ ....|-+++++. +... +... .+...+|.
T Consensus 105 ~rl~p~l~~L~g--k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~--lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 105 DRLLPHLPDLKG--KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP--LFYLQFEAIKHFLGQDPPVFELPLGVEDLPN- 179 (315)
T ss_pred HHHHhhhCCcCC--CEEEEecCCCcHHHHHHhhcCCCEEEEECCCh--HHHHHHHHHHHHhCCCccEEEcCcchhhccc-
Confidence 445555543334 49999999999999999987 577776543 344454444432 2333 2223 35558887
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.++||+|+|..+|.|.. ++-..|.++...|+|||.+++.
T Consensus 180 ~~~FDtVF~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRR-SPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred cCCcCEEEEeeehhccC-CHHHHHHHHHHhhCCCCEEEEE
Confidence 78999999999998877 9999999999999999999984
No 66
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.12 E-value=1.3e-09 Score=103.43 Aligned_cols=91 Identities=26% Similarity=0.337 Sum_probs=62.8
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
.+|||+|||+|.++..+++. .++++|+++..+..+.. .+...++... ..++..+.+||+|+++...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~-n~~~~~~~~~------~~~~~~~~~fD~Vvani~~---- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARE-NAELNGVELN------VYLPQGDLKADVIVANILA---- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCCCce------EEEccCCCCcCEEEEcCcH----
Confidence 48999999999998887765 48899887765554443 3333444211 1222223379999987432
Q ss_pred cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.....++.++.++|||||++++++.
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1235788999999999999999853
No 67
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.11 E-value=2.1e-10 Score=106.00 Aligned_cols=101 Identities=19% Similarity=0.293 Sum_probs=69.8
Q ss_pred HHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC-
Q 036725 192 IEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL- 263 (392)
Q Consensus 192 i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l- 263 (392)
+.++.+.+.. .++ .+|||||||+|.++..++++ .|+++|+++. ...+.+.++.++. ..
T Consensus 39 l~~~~~~~~~~~~~--~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------------~~~~~v~~i~~D~~~~~ 104 (209)
T PRK11188 39 LDEIQQSDKLFKPG--MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------------DPIVGVDFLQGDFRDEL 104 (209)
T ss_pred hHHHHHHhccCCCC--CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------------cCCCCcEEEecCCCChH
Confidence 3444444442 333 38999999999999988775 5899998761 1123345555555 32
Q ss_pred -------CCCCCccceEEecccccccccCh-----------HHHHHHHHHhccCCeEEEEEc
Q 036725 264 -------PYPSRAFDMAHCSRCLIPWSAND-----------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 -------p~~d~sFDlV~~~~~l~~~~~d~-----------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++.+++||+|+|+.+. ++..++ ..+|.++.++|||||.|++..
T Consensus 105 ~~~~i~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 105 VLKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred HHHHHHHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 3668899999997654 332221 468999999999999999964
No 68
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.10 E-value=5.4e-10 Score=108.07 Aligned_cols=123 Identities=22% Similarity=0.244 Sum_probs=81.3
Q ss_pred cCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcE
Q 036725 178 PGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAV 254 (392)
Q Consensus 178 p~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~ 254 (392)
-..|.-|..|.+......++.+.......++|||+|||+|.++...++. .|+++|+++..+.. ..+.++.+++...
T Consensus 134 idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~-a~~N~~~N~~~~~ 212 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEA-ARENAELNGVEDR 212 (295)
T ss_dssp ESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHH-HHHHHHHTT-TTC
T ss_pred ECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHH-HHHHHHHcCCCee
Confidence 3466678887777665555554422222349999999999888777765 79999998865554 4446666776654
Q ss_pred EEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 255 IGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 255 ~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+... .......||+|+++-.. .-...++..+.++|+|||+|++++
T Consensus 213 ~~v~~~--~~~~~~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 213 IEVSLS--EDLVEGKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp EEESCT--SCTCCS-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred EEEEEe--cccccccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEcc
Confidence 434322 22335899999987432 123567888999999999999996
No 69
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=9.3e-10 Score=101.89 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=76.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
......+.+.+...++. +|||||||+|+++..+++. .|+++|+++.....+. +...+.+..++.++.++. .
T Consensus 62 p~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~-~~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 62 IHMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAK-KTLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred HHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCeEEEECCccc
Confidence 34556666666655554 8999999999999888764 6899988775444433 233445666677777776 4
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.+.+.||+|++.....+. ...+.+.|||||.+++..
T Consensus 139 ~~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 44456889999987654332 356778999999999953
No 70
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.09 E-value=1.3e-09 Score=101.09 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=76.3
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--C---cEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--N---VITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~---v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
.....+.+.+....+. +|||||||+|.++..|++. . |+++|+++..+..+. +.+.+.++.++.++.++. ..
T Consensus 64 ~~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 64 HMVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccC
Confidence 3455666666655554 8999999999999998875 3 899988875544433 344555666677777665 33
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.||+|++.....+ +...+.+.|+|||++++..
T Consensus 141 ~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 141 WEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 333568999998754432 3467889999999999864
No 71
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.2e-09 Score=104.59 Aligned_cols=119 Identities=23% Similarity=0.243 Sum_probs=84.8
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 261 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~ 261 (392)
...+.-.+.|++.++...+. +|||+|||.|.++..|++. .++-+|++...+..++. .+..+++.+..+..++.
T Consensus 141 ~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~-Nl~~N~~~~~~v~~s~~ 217 (300)
T COG2813 141 DKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARK-NLAANGVENTEVWASNL 217 (300)
T ss_pred CCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHH-hHHHcCCCccEEEEecc
Confidence 34555667788888865554 8999999999999999987 67777776654444333 33334555534556666
Q ss_pred cCCCCCCccceEEecccccccccCh----HHHHHHHHHhccCCeEEEEEcC
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSAND----GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~d~----~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..+.++ +||+|+|+--+|.-..-. .+++.+..+.|++||.|+++..
T Consensus 218 ~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 218 YEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 666656 999999997654322111 3899999999999999999875
No 72
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.08 E-value=7.5e-10 Score=102.71 Aligned_cols=114 Identities=20% Similarity=0.260 Sum_probs=77.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp 264 (392)
+...+.+.+.++.......+|||+|||+|.++..+++. .++++|+++.++..++.+.. ..+. ..+.+...+. .++
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC
Confidence 44555566666521122348999999999999999876 78899887765555443332 2232 2445555554 443
Q ss_pred CCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEE
Q 036725 265 YPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++||+|++..+++++.. +...++.++.+++++++++.+.
T Consensus 118 ---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 118 ---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred ---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 78999999888877753 3478999999999987776654
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.06 E-value=5.7e-09 Score=98.27 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=81.0
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~ 262 (392)
..+.+++.+.+.+.. . ..+|||+|||+|.++..+++. .++++|+++..+..+.. .+...+++++.+..++..
T Consensus 72 ~~~~l~~~~l~~~~~-~--~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~ 147 (251)
T TIGR03534 72 DTEELVEAALERLKK-G--PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSDWF 147 (251)
T ss_pred ChHHHHHHHHHhccc-C--CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchh
Confidence 345667777766652 2 238999999999999999875 78899888765554433 334456665666666664
Q ss_pred CCCCCCccceEEecccccc------cccC-------------------hHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIP------WSAN-------------------DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~------~~~d-------------------~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-++++++||+|+++.-... +..+ ...++.++.++|+|||.+++..
T Consensus 148 ~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 148 EPLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ccCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4667889999998643221 1000 1367899999999999999964
No 74
>PLN03075 nicotianamine synthase; Provisional
Probab=99.05 E-value=1.2e-09 Score=105.33 Aligned_cols=101 Identities=9% Similarity=0.178 Sum_probs=73.9
Q ss_pred cceEEEECCcCchHHHHHhh--C----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCccceEEecc
Q 036725 206 VRTALDTGCGVASWGAYLFK--K----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRAFDMAHCSR 277 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~--~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~~ 277 (392)
.++|+|||||.|.+++.++. . .++++|.++..+..+........++ +.+.+..++. .++-..+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 35899999998855544332 2 5899999886666555433333555 3466776665 443235789999999
Q ss_pred cccccc-cChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWS-ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++++|. ++...+|..+.+.|+|||++++-.
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888884 577999999999999999999965
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.04 E-value=1.5e-09 Score=107.38 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=78.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+.-.+.+++.++..... +|||+|||+|.++..++++ .++++|+++.++..+... +...++...+. ..+.. .
T Consensus 182 D~gt~lLl~~l~~~~~g--~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~n-l~~n~l~~~~~-~~D~~-~ 256 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKG--KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRAT-LAANGLEGEVF-ASNVF-S 256 (342)
T ss_pred CHHHHHHHHhccccCCC--eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCEEE-Ecccc-c
Confidence 34445556655533222 7999999999999999875 688999887666655443 33445544332 33321 2
Q ss_pred CCCCccceEEecccccccc----cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 265 YPSRAFDMAHCSRCLIPWS----ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~----~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..+++||+|+|+..++... .....++.++.+.|||||.|+++.+
T Consensus 257 ~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 257 DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2367899999997664322 1236899999999999999999864
No 76
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.03 E-value=9.8e-10 Score=102.17 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=68.4
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC---------------cEEEEeccc-cCCCC-CC
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP---------------AVIGVLGTI-KLPYP-SR 268 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~---------------~~~~~~~~~-~lp~~-d~ 268 (392)
+|||+|||.|..+.+|+++ .|+++|+++..+..+ +.++++. .+.+..++. .++.. ..
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~----~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQF----FAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHH----HHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 8999999999999999998 899998877644432 2344332 233333443 55332 35
Q ss_pred ccceEEecccccccccCh-HHHHHHHHHhccCCeEEEE
Q 036725 269 AFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl 305 (392)
.||+|+-..+++++.++. ..++..+.++|+|||++++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 899999888887776555 6899999999999997554
No 77
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.03 E-value=1.6e-09 Score=105.63 Aligned_cols=110 Identities=22% Similarity=0.303 Sum_probs=77.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPY 265 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~ 265 (392)
.+.+.+.+....+ .+|||||||+|.++..++++ +++++|. +..+.. ..+.+.+.++ +.+.++.++. ..++
T Consensus 138 ~~~l~~~~~~~~~--~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~-a~~~~~~~gl~~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 138 IQLLLEEAKLDGV--KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL-VNENAAEKGVADRMRGIAVDIYKESY 213 (306)
T ss_pred HHHHHHHcCCCCC--CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH-HHHHHHhCCccceEEEEecCccCCCC
Confidence 4445555554333 48999999999999999887 5777776 322322 2234444554 3455666665 4566
Q ss_pred CCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++ +|+|++++++++|.++. ..+|+++.++|||||++++..
T Consensus 214 ~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 214 PE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54 69999998998887443 689999999999999999975
No 78
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.01 E-value=2e-09 Score=100.08 Aligned_cols=112 Identities=21% Similarity=0.317 Sum_probs=72.8
Q ss_pred HHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCC
Q 036725 190 AYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPY 265 (392)
Q Consensus 190 ~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~ 265 (392)
...+.+.+.++. ......+|||||||+|.++..|++. .++++|+++.++..+..... ..+. ..+.+...+ ++.
T Consensus 47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~-~~~~~~~i~~~~~d--~~~ 123 (230)
T PRK07580 47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAP-EAGLAGNITFEVGD--LES 123 (230)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCccCcEEEEcC--chh
Confidence 344444544432 0112248999999999999999876 68889887766555544332 2232 234444444 455
Q ss_pred CCCccceEEecccccccccC-hHHHHHHHHHhccCCeEEE
Q 036725 266 PSRAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWV 304 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lv 304 (392)
.+++||+|++..+++|+... ...+++++.+++++++++.
T Consensus 124 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 124 LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 57899999999988787633 3678889988876554443
No 79
>PRK06202 hypothetical protein; Provisional
Probab=99.00 E-value=3.4e-09 Score=99.23 Aligned_cols=93 Identities=22% Similarity=0.209 Sum_probs=64.4
Q ss_pred ceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCC-CcEEE-EeccccCCCCCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGV-PAVIG-VLGTIKLPYPSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~-~~~~~~lp~~d~sFDlV~~~ 276 (392)
.+|||+|||+|.++..|++. .++++|+++. +++.|+++.. +.+.+ +.....+++++++||+|+++
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~-----~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR-----AVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH-----HHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 48999999999998887641 6888876654 5555544321 11222 22223566678899999999
Q ss_pred ccccccccC-hHHHHHHHHHhccCCeEEEEE
Q 036725 277 RCLIPWSAN-DGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 277 ~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.+++|+.++ ...+|+++.|++| |.+++.
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 999887633 2579999999998 444444
No 80
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.00 E-value=3.6e-09 Score=98.91 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=77.4
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPS 267 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d 267 (392)
++.+...+....+ .+|||||||+|.++..+.+. .++++|+++..+..+.... ...+... .+...+. .++ ..+
T Consensus 37 ~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~-~~~~~~~~~~~~~~~ 112 (233)
T PRK05134 37 LNYIREHAGGLFG--KRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKI-DYRQTTAEELAAEHP 112 (233)
T ss_pred HHHHHHhccCCCC--CeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCce-EEEecCHHHhhhhcC
Confidence 4444444432233 48999999999999988876 6888877665444333222 2223322 2333333 333 346
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|++..++.+.. ++..+|+++.++|+|||.++++.+..
T Consensus 113 ~~fD~Ii~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 113 GQFDVVTCMEMLEHVP-DPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred CCccEEEEhhHhhccC-CHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 7999999998887665 88899999999999999999986543
No 81
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.99 E-value=4.1e-09 Score=103.10 Aligned_cols=117 Identities=17% Similarity=0.125 Sum_probs=72.3
Q ss_pred HHHHHHHHhhCCCC-CCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc----CCCcEEEEeccc
Q 036725 189 DAYIEELASVIPMD-SGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER----GVPAVIGVLGTI 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r----g~~~~~~~~~~~ 261 (392)
+..++.+.+.+... .....+|||+|||+|.++..|+++ .|+++|+++.++..+..+..... +.....+...+.
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 34455555555422 112248999999999999999987 68999888776665554332210 112233333333
Q ss_pred cCCCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcC
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+..+++||+|+|..+++|+.++. ..++..+.+ +.+||.++...|
T Consensus 207 --~~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p 251 (315)
T PLN02585 207 --ESLSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAP 251 (315)
T ss_pred --hhcCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCC
Confidence 22268899999999998887443 345666665 456666554434
No 82
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.99 E-value=3.1e-09 Score=95.55 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=69.3
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||+|||+|.++..++++ .++++|+++.++..+..+. ...+. .+.+..++. ..+ .++||+|+++..+++...
T Consensus 22 ~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~-~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENA-KLNNV-GLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred eEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCC-ceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 7999999999999999987 5889988876555444333 23343 334444444 332 458999999876654431
Q ss_pred C--------------------hHHHHHHHHHhccCCeEEEEEcCC
Q 036725 285 N--------------------DGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 285 d--------------------~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
. ...++.++.|+|||||.+++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 1 246899999999999999997643
No 83
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.99 E-value=7.3e-10 Score=102.13 Aligned_cols=92 Identities=21% Similarity=0.263 Sum_probs=67.8
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEE-----eccccCCCC--CCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGV-----LGTIKLPYP--SRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~-----~~~~~lp~~--d~sFDlV~~~~ 277 (392)
+.++|+|||+|..+..+++. +|+++|+ +++|++.|++.- ++.... .++...++. ++|.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~-----s~~mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDV-----SEAMLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecC-----CHHHHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 48999999999777777776 8999955 566888777653 222211 112223333 89999999999
Q ss_pred cccccccChHHHHHHHHHhccCCe-EEEEE
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGG-YWVLS 306 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG-~lvl~ 306 (392)
|+ ||. |.+.+++++.|+||+.| ++.+-
T Consensus 109 a~-HWF-dle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 109 AV-HWF-DLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hH-Hhh-chHHHHHHHHHHcCCCCCEEEEE
Confidence 88 898 99999999999999877 55553
No 84
>PRK04266 fibrillarin; Provisional
Probab=98.99 E-value=3.9e-09 Score=98.67 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=70.7
Q ss_pred hhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC-----CCC
Q 036725 197 SVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP-----YPS 267 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp-----~~d 267 (392)
+.++..++. +|||+|||+|.++..|++. .|+++|+++.++.... +.++++ +++..+.++...| + .
T Consensus 66 ~~l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~--~nv~~i~~D~~~~~~~~~l-~ 139 (226)
T PRK04266 66 KNFPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER--KNIIPILADARKPERYAHV-V 139 (226)
T ss_pred hhCCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc--CCcEEEECCCCCcchhhhc-c
Confidence 346655554 8999999999999999886 5999998876665433 344443 3444455554322 2 3
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++||+|++... .......++.++.|+|||||.++++.+.
T Consensus 140 ~~~D~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 140 EKVDVIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred ccCCEEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 56999986422 1112245689999999999999997543
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=98.98 E-value=7.5e-09 Score=96.43 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=67.9
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||+|||+|.++..+++. +++++|+++..+..+.. .+...+.. ..++.++....+++++||+|+++.-..+-..
T Consensus 39 ~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~-~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~~ 116 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVD-VDVRRGDWARAVEFRPFDVVVSNPPYVPAPP 116 (223)
T ss_pred eEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCe-eEEEECchhhhccCCCeeEEEECCCCCCCCc
Confidence 8999999999999988875 68899887755544332 33334443 3444455433456789999999743221110
Q ss_pred --------------------ChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 285 --------------------NDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 285 --------------------d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
....++.++.++|||||.+++....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 117 DAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred ccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 0245788999999999999986543
No 86
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.98 E-value=3.1e-09 Score=96.83 Aligned_cols=103 Identities=27% Similarity=0.333 Sum_probs=69.5
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC-CCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL-PYPS 267 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l-p~~d 267 (392)
+.+.+.++ .+. +|||+|||+|.++..+++. .++++|+++ .+++.+.++++..+ ..+.. .+ ++++
T Consensus 5 ~~i~~~i~--~~~--~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~-----~~i~~a~~~~~~~~--~~d~~~~l~~~~~ 73 (194)
T TIGR02081 5 ESILNLIP--PGS--RVLDLGCGDGELLALLRDEKQVRGYGIEIDQ-----DGVLACVARGVNVI--QGDLDEGLEAFPD 73 (194)
T ss_pred HHHHHhcC--CCC--EEEEeCCCCCHHHHHHHhccCCcEEEEeCCH-----HHHHHHHHcCCeEE--EEEhhhcccccCC
Confidence 34444444 333 8999999999999988764 457776654 45556666554322 22222 24 4778
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|+++.+++|.. ++..+|+++.|++++ .+++.|..
T Consensus 74 ~sfD~Vi~~~~l~~~~-d~~~~l~e~~r~~~~---~ii~~p~~ 112 (194)
T TIGR02081 74 KSFDYVILSQTLQATR-NPEEILDEMLRVGRH---AIVSFPNF 112 (194)
T ss_pred CCcCEEEEhhHhHcCc-CHHHHHHHHHHhCCe---EEEEcCCh
Confidence 9999999999987665 889999999887654 45554443
No 87
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.97 E-value=3.2e-10 Score=103.55 Aligned_cols=99 Identities=24% Similarity=0.328 Sum_probs=78.5
Q ss_pred CCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCccceEEecccc
Q 036725 204 GMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAFDMAHCSRCL 279 (392)
Q Consensus 204 ~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sFDlV~~~~~l 279 (392)
+..+++||+|||||-++..|..+ .++++ |+|++|++.|.++++-....+.... -++ ..++.||+|++..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv-----DiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGV-----DISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCC-----chhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 44679999999999999999886 67777 6678899999999864444444433 233 457889999999988
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. +.-+.+.++.-+...|+|||.|.+++-
T Consensus 199 ~-YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 199 P-YLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred H-hhcchhhHHHHHHHhcCCCceEEEEec
Confidence 5 444889999999999999999999863
No 88
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.97 E-value=2.9e-09 Score=99.74 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=100.3
Q ss_pred CCCCCCCccHHHHHHHHHhh-CCC-CCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcE
Q 036725 179 GGGTQFPHGADAYIEELASV-IPM-DSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAV 254 (392)
Q Consensus 179 ~~g~~f~~~~~~~i~~l~~~-l~~-~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~ 254 (392)
|.|.||--..+++.+.+... ... ......++||||+|.|..+..|+.. +|.+.++| ..|+..-+++|...+
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-----~~Mr~rL~~kg~~vl 140 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-----PPMRWRLSKKGFTVL 140 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCC-----HHHHHHHHhCCCeEE
Confidence 46777755555554444321 111 1113458999999999999999886 78888655 457777778886432
Q ss_pred EEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc--CCCchhhhhh-hcccChHhHHHHHH
Q 036725 255 IGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG--PLINWRTNYQ-AWQRPIKELEEEQR 331 (392)
Q Consensus 255 ~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~--p~~~~~~~~~-~w~~~~e~l~~~~~ 331 (392)
+..++.-.+.+||+|.|.++|. -..+|..+|++|++.|+|+|.+++.. |-..+.+... .+.++.+.+.-...
T Consensus 141 ----~~~~w~~~~~~fDvIscLNvLD-Rc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~ 215 (265)
T PF05219_consen 141 ----DIDDWQQTDFKFDVISCLNVLD-RCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGA 215 (265)
T ss_pred ----ehhhhhccCCceEEEeehhhhh-ccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCC
Confidence 2222332356899999998884 44488999999999999999999853 5555555443 46666666655444
Q ss_pred HHHHHHHHc
Q 036725 332 KIEEIAKLL 340 (392)
Q Consensus 332 ~i~~l~~~l 340 (392)
.+|+....+
T Consensus 216 ~~E~~v~~l 224 (265)
T PF05219_consen 216 TFEEQVSSL 224 (265)
T ss_pred cHHHHHHHH
Confidence 555554444
No 89
>PTZ00146 fibrillarin; Provisional
Probab=98.97 E-value=6.4e-09 Score=99.92 Aligned_cols=100 Identities=16% Similarity=0.285 Sum_probs=69.6
Q ss_pred CCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC----CCCCcc
Q 036725 200 PMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP----YPSRAF 270 (392)
Q Consensus 200 ~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp----~~d~sF 270 (392)
...++. +|||+|||+|.++..+++. .|+++|+++.+ .+.+++.+.++ +++..+..+...| ....+|
T Consensus 129 ~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~-~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 129 PIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRS-GRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHH-HHHHHHHhhhc--CCCEEEECCccChhhhhcccCCC
Confidence 334444 8999999999999999986 59999987542 23455566554 3444455554322 234689
Q ss_pred ceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 271 DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 271 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|+|++... .+++...++.++.++|||||+|++..
T Consensus 204 DvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 204 DVIFADVA---QPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEE
Confidence 99998753 22234567789999999999999963
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.97 E-value=6.7e-09 Score=102.48 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=79.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSR 268 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~ 268 (392)
...++++....++. +|||+|||+|.++..++.. .++++|+++.++..+.. .++..+++.+.+...+. ++|++++
T Consensus 171 a~~~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~-nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 171 ARAMVNLARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARI-NLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHH-HHHHhCCCCCeEEecchhcCCcccC
Confidence 34444444433443 8999999999998776554 78999988776665443 34445655544444454 8888889
Q ss_pred ccceEEeccccc-----c--cc-cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 269 AFDMAHCSRCLI-----P--WS-ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 269 sFDlV~~~~~l~-----~--~~-~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+||+|+++.-.. . .. .....++.++.|+|||||++++..|..
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 999999963211 0 01 113689999999999999999987654
No 91
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.95 E-value=6.1e-09 Score=96.55 Aligned_cols=102 Identities=19% Similarity=0.286 Sum_probs=73.6
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC-CCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP-SRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~-d~sFDlV~~~~~l~~~ 282 (392)
.+|||+|||+|.++..+++. .++++|+++..+..+..+.. ..+...+.+...+. .++.. .++||+|++..++++.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 48999999999999988765 68888877655444333222 23332344444443 45443 4789999999888666
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. ++..++.++.++|+|||.++++.+..
T Consensus 126 ~-~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 126 P-DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred C-CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 5 88999999999999999999876543
No 92
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.93 E-value=1.1e-08 Score=94.44 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=73.0
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCC-CC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPY-PS 267 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~-~d 267 (392)
....+.+.+...++. +|||+|||+|.++..|++. .++++|.++..+..+.. ...+.++.++.+..++....+ +.
T Consensus 66 ~~~~l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 66 MVARMTELLELKPGD--RVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKR-RLKQLGLHNVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHHhcCCCCCC--EEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHH-HHHHCCCCceEEEECCcccCCCcC
Confidence 445556666544443 8999999999999877765 68899887654443332 333345555666666653233 34
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++||+|++.....+ +..++.+.|+|||.+++...
T Consensus 143 ~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 78999998765432 24678899999999999754
No 93
>PRK14968 putative methyltransferase; Provisional
Probab=98.93 E-value=1.4e-08 Score=91.12 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=69.9
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCc--EEEEeccccCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIKLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~--~~~~~~~~~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||+|||+|.++..++++ +++++|+++..+..++. .....+... ..++..+...++++++||+|+++..+.+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~~~ 103 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKC-NAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLPT 103 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHH-HHHHcCCCCcceEEEeccccccccccCceEEEECCCcCCC
Confidence 38999999999999999876 88999887765544433 333334332 34444554335566689999987544321
Q ss_pred c--------------------cChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 283 S--------------------ANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 283 ~--------------------~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
. .....+++++.++|||||.+++..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 104 EEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred CchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 1 01246899999999999999887643
No 94
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.91 E-value=3.3e-08 Score=90.44 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=72.5
Q ss_pred HhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-c-CCCCC
Q 036725 196 ASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-K-LPYPS 267 (392)
Q Consensus 196 ~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~-lp~~d 267 (392)
+..+....+. +|||+|||+|.++..++.. +++++|+++.++..++. .++..+ ...+.++.++. . ++..+
T Consensus 33 l~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~-n~~~~g~~~~v~~~~~d~~~~l~~~~ 109 (198)
T PRK00377 33 LSKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR-NAEKFGVLNNIVLIKGEAPEILFTIN 109 (198)
T ss_pred HHHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCCeEEEEechhhhHhhcC
Confidence 4455544444 8999999999999877542 68999988765554333 344445 34555555554 3 33334
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.||.|++... ..+...++.++.++|||||++++..
T Consensus 110 ~~~D~V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 110 EKFDRIFIGGG----SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCCCEEEECCC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 68999998532 2256789999999999999999864
No 95
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.90 E-value=7.6e-09 Score=91.59 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=78.6
Q ss_pred HHHHHHHhhCCC--CCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccc-
Q 036725 190 AYIEELASVIPM--DSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTI- 261 (392)
Q Consensus 190 ~~i~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~- 261 (392)
..++.+...+.. ......+|||+|||.|.+...|++. ..+|+|+++..+.-| ...|...+.++ +.+.+.+.
T Consensus 50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA-~niAe~~~~~n~I~f~q~DI~ 128 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELA-QNIAERDGFSNEIRFQQLDIT 128 (227)
T ss_pred HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHH-HHHHHhcCCCcceeEEEeecc
Confidence 345555554431 1111228999999999999999987 477887776544332 23555567665 56666665
Q ss_pred cCCCCCCccceEEecccc-----cccc--cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 262 KLPYPSRAFDMAHCSRCL-----IPWS--ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l-----~~~~--~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.-.+..+.||+|+--..+ ++-. ..+..++.-+.++|+|||+|+|++.+.
T Consensus 129 ~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 129 DPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred CCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 445778899999854333 1111 112468899999999999999987544
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=5e-08 Score=93.36 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=75.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+.+++.+...+....+ .+|||+|||+|.++..++.. .++++|+++..+..+..... ......+.++.++...+
T Consensus 94 e~l~~~~~~~~~~~~~--~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~ 170 (275)
T PRK09328 94 EELVEWALEALLLKEP--LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP 170 (275)
T ss_pred HHHHHHHHHhccccCC--CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc
Confidence 5566666644443333 38999999999999988865 68899887765544433322 12334555666665444
Q ss_pred CCCCccceEEecccccccc-------------------------cChHHHHHHHHHhccCCeEEEEEc
Q 036725 265 YPSRAFDMAHCSRCLIPWS-------------------------ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~-------------------------~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++++||+|+++.-..... .....++.++.++|+|||++++..
T Consensus 171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5568999999863221100 012467888899999999999964
No 97
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.89 E-value=2.8e-09 Score=88.39 Aligned_cols=101 Identities=25% Similarity=0.422 Sum_probs=67.7
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC--CCCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL--PYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l--p~~d~sFDlV~~~~~l 279 (392)
.+|||+|||+|.++..+++. .++++|+++.....+.. .....+. ..+.+..++. .. ++++++||+|+++.-.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARR-NLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHH-HCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHH-HHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 38999999999999888865 78899887643333222 2223333 3455555555 44 3778999999998654
Q ss_pred ccccc-------ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 280 IPWSA-------NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 280 ~~~~~-------d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..... ....+++++.++|||||.+++..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 32211 125789999999999999999764
No 98
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.89 E-value=2.9e-08 Score=90.57 Aligned_cols=112 Identities=17% Similarity=0.088 Sum_probs=74.7
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K- 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~- 262 (392)
......+.+.+....+. +|||+|||+|.++..+++. .++++|+++..+..++. .+.+.+...+.++.++. .
T Consensus 26 ~~v~~~l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~-n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRR-NCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCeEEEECchHHH
Confidence 33444556666544443 8999999999999888643 79999998866555443 34445555556665554 2
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++.....+|.|+... ..+...++.++.++|+|||++++..+
T Consensus 103 ~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 103 LAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 222223467765431 22457899999999999999999764
No 99
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.86 E-value=8.1e-09 Score=93.88 Aligned_cols=97 Identities=21% Similarity=0.334 Sum_probs=59.5
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccc
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFD 271 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFD 271 (392)
+.+++.+...+. ...|-|+|||.+.++..+.+. .|...|+.+.. +. +...+...+|++++++|
T Consensus 61 d~iI~~l~~~~~-~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n--------------~~-Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 61 DVIIEWLKKRPK-SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN--------------PR-VTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHCTS-T-TS-EEEES-TT-HHHHH--S---EEEEESS-SS--------------TT-EEES-TTS-S--TT-EE
T ss_pred HHHHHHHHhcCC-CEEEEECCCchHHHHHhcccCceEEEeeccCCC--------------CC-EEEecCccCcCCCCcee
Confidence 444444443332 248999999999999887654 68888875431 22 33555569999999999
Q ss_pred eEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 272 MAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 272 lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++++...| ...+...++.|..|+|||||.|++..
T Consensus 125 v~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 125 VAVFCLSL--MGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp EEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEE
Confidence 99987666 34477899999999999999999975
No 100
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.7e-08 Score=90.89 Aligned_cols=108 Identities=17% Similarity=0.201 Sum_probs=80.2
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS 267 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d 267 (392)
.....+.+.+...++. +|||||||+|+.++.|++. +|++++..+. +.+...+.-...|..++..+.++-..-++.
T Consensus 59 ~~vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~siEr~~~-L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 59 HMVARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSIERIEE-LAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEEEEcHH-HHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 3566777777777776 8999999999999999987 7888876542 222222333456777788888888666665
Q ss_pred -CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 -RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 -~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..||.|+........+ ..+.+.||+||.+++-.
T Consensus 136 ~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 136 EAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEE
Confidence 7899999886664444 55667799999999964
No 101
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.86 E-value=5.1e-08 Score=94.29 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=70.1
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccccCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..++++ .++++|+++..+..+.. .+...++. .+.++.++...++++++||+|+++--...
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~-n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVD 201 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCC
Confidence 38999999999999999875 68999888765555443 34445553 45566666533455678999998721110
Q ss_pred ----------cccC--------------hHHHHHHHHHhccCCeEEEEEcC
Q 036725 282 ----------WSAN--------------DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 282 ----------~~~d--------------~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+..+ ...++.++.++|+|||++++...
T Consensus 202 ~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 202 AEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred ccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0001 14678999999999999999754
No 102
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.84 E-value=8.6e-08 Score=92.69 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEecccc
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~~ 262 (392)
.+.+++.+.+.+....+ ..+|||+|||+|.++..++.. .++++|+++..+..+.. .+...++. .+.++.++..
T Consensus 98 te~lv~~~l~~~~~~~~-~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~-n~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 98 TEELVEKALASLISQNP-ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE-NAEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred cHHHHHHHHHHhhhcCC-CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchh
Confidence 35566666554421121 138999999999999998864 68999887765554443 34444554 3666666664
Q ss_pred CCCCCCccceEEecccccc------------ccc------------ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIP------------WSA------------NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~------------~~~------------d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.++++++||+|+++.-.+. +.+ ....++.++.+.|+|||++++...
T Consensus 176 ~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 176 EPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred ccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 4555668999999721110 100 124688999999999999999764
No 103
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.83 E-value=2.7e-08 Score=96.95 Aligned_cols=101 Identities=14% Similarity=0.234 Sum_probs=65.5
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHc-CCCcEEEEeccc-c-CCCCCCc----cceEE
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALER-GVPAVIGVLGTI-K-LPYPSRA----FDMAH 274 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~r-g~~~~~~~~~~~-~-lp~~d~s----FDlV~ 274 (392)
.+|||+|||+|..+..|+++ .++++|+++.++..++.+..... +++ +..+.++. + ++++... ..+++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~-v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLE-VHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCce-EEEEEEcccchhhhhcccccCCeEEEE
Confidence 38999999999999888765 68888888776666555443322 222 33344554 2 3443332 23444
Q ss_pred eccccccccc-ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 275 CSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 275 ~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+...+.++.+ +...+|+++.++|+|||.|++...
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 4444444432 236899999999999999999653
No 104
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.83 E-value=3.8e-08 Score=92.42 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=72.9
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC--CCCCCccceEEeccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL--PYPSRAFDMAHCSRC 278 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l--p~~d~sFDlV~~~~~ 278 (392)
..+|||+|||+|..+..++++ .+++|++.+.+...++...+...--..+.+..++. .+ ...-.+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 348999999999999999987 68889887665555444444322234455566665 22 233457999999843
Q ss_pred ccccc-----------------cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 279 LIPWS-----------------ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 279 l~~~~-----------------~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
...-. -+.+.+++-..++|||||++.++.++.
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 32111 123588999999999999999987655
No 105
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.83 E-value=1.7e-08 Score=93.22 Aligned_cols=109 Identities=19% Similarity=0.257 Sum_probs=74.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l 263 (392)
-.....+++.+...++. +|||||||+|++++.|+.. .|+++|..+. +.+...+.....+..++.++.++...
T Consensus 58 P~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~-l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPE-LAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHH-HHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHH-HHHHHHHHHHHhccCceeEEEcchhh
Confidence 44667778888877776 9999999999999998875 3778888763 33333334444577777778877654
Q ss_pred CCC-CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYP-SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~-d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.++ ...||.|++.......+ ..+.+.||+||++++-.
T Consensus 135 g~~~~apfD~I~v~~a~~~ip-------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIP-------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEE
T ss_pred ccccCCCcCEEEEeeccchHH-------HHHHHhcCCCcEEEEEE
Confidence 443 46899999987664333 56777899999999954
No 106
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.81 E-value=2.3e-08 Score=78.90 Aligned_cols=98 Identities=26% Similarity=0.338 Sum_probs=68.3
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCccceEEeccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sFDlV~~~~~l~~~ 282 (392)
++||+|||.|.++..+++. .++++|.++.....+.. ...........+...+. ... ...++||+|++..++.++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999988873 78888876543332221 11122333444455554 333 246789999999887553
Q ss_pred ccChHHHHHHHHHhccCCeEEEEE
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
......+++.+.+.|+|||++++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 446689999999999999999985
No 107
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=9.1e-09 Score=94.95 Aligned_cols=120 Identities=20% Similarity=0.320 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHHHcC-------CC
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFALERG-------VP 252 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~~rg-------~~ 252 (392)
....-+...+-++++.......+||+||||.|...-.+++- .+.+.|+++. +++..+++. -.
T Consensus 52 kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~-----Ai~~vk~~~~~~e~~~~a 126 (264)
T KOG2361|consen 52 KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR-----AIELVKKSSGYDESRVEA 126 (264)
T ss_pred chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH-----HHHHHHhccccchhhhcc
Confidence 33344555566666544433337999999999888888764 5778877765 344444321 11
Q ss_pred cEEEEeccc-cCCCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 253 AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 253 ~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.+.-...+. .-|.+.+++|+|++.++|....++. ..++.++.++|||||.+++-+...
T Consensus 127 fv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 127 FVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred cceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 122222222 4567789999999999997776555 689999999999999999976444
No 108
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.79 E-value=3.2e-08 Score=92.11 Aligned_cols=96 Identities=19% Similarity=0.287 Sum_probs=69.9
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccce
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDM 272 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDl 272 (392)
+.+++.+...++. ..|-|+|||.+.++.. ....|..+|+.+. ...+...+..++|.+|+|.|+
T Consensus 169 d~ii~~ik~r~~~-~vIaD~GCGEakiA~~-~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDv 231 (325)
T KOG3045|consen 169 DVIIRKIKRRPKN-IVIADFGCGEAKIASS-ERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDV 231 (325)
T ss_pred HHHHHHHHhCcCc-eEEEecccchhhhhhc-cccceeeeeeecC---------------CCceeeccccCCcCccCcccE
Confidence 4455555544443 3799999999987761 1127888887543 222345555689999999999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 273 AHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 273 V~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++...| +..+...++.|++|+||+||.|++..
T Consensus 232 aV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 232 AVFCLSL--MGTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred EEeeHhh--hcccHHHHHHHHHHHhccCceEEEEe
Confidence 9975444 45588899999999999999999974
No 109
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=3.1e-09 Score=97.16 Aligned_cols=95 Identities=20% Similarity=0.276 Sum_probs=77.1
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc---CCCcEEEEeccccCCCCCCccceEEeccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r---g~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~ 280 (392)
..++|||||.|.....|..+ +++-+|.+. .|++.++.. ++....++.+...|+|.+++||+|+++..+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~-----~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl- 147 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSY-----DMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL- 147 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecch-----HHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-
Confidence 37999999999999999987 566776554 455555543 444455566666999999999999999877
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
||..+....+.++...|||+|.|+.+.
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhHH
Confidence 899888999999999999999999853
No 110
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.78 E-value=1.7e-07 Score=94.36 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=74.8
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI- 261 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~- 261 (392)
..+.+++.+.+.+. .+ .+|||+|||+|.++..++.. .++++|+++.++..++. .+...+. .+.++.++.
T Consensus 237 eTE~LVe~aL~~l~--~~--~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Are-Na~~~g~-rV~fi~gDl~ 310 (423)
T PRK14966 237 ETEHLVEAVLARLP--EN--GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARK-NAADLGA-RVEFAHGSWF 310 (423)
T ss_pred cHHHHHHHhhhccC--CC--CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCC-cEEEEEcchh
Confidence 34566676666554 22 28999999999999888753 68999988766655444 3334454 345555554
Q ss_pred cCCCC-CCccceEEecccccccc--------------------cC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 262 KLPYP-SRAFDMAHCSRCLIPWS--------------------AN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 ~lp~~-d~sFDlV~~~~~l~~~~--------------------~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...++ .++||+|+|+.-.++-. ++ ...++.++.+.|+|||.+++..
T Consensus 311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 32232 46899999975322110 00 1267777889999999999865
No 111
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.78 E-value=4.5e-08 Score=91.22 Aligned_cols=100 Identities=18% Similarity=0.129 Sum_probs=72.7
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHH------------HHHcCCCcEEEEeccc-cCCCC---CC
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQF------------ALERGVPAVIGVLGTI-KLPYP---SR 268 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~------------a~~rg~~~~~~~~~~~-~lp~~---d~ 268 (392)
.+||+.|||.|.-+.+|+++ .|+|+|+|+..+.....+. ...++.. +.+..++. .++.. .+
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~-i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD-IEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc-eEEEEccCcCCCccccccC
Confidence 38999999999999999998 8999988876554432211 0012323 33444444 66532 26
Q ss_pred ccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.||+|+-..++++++++. .++.+.+.++|+|||.+++..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 899999888888887665 689999999999999998864
No 112
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.78 E-value=1.1e-07 Score=92.84 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=69.3
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..++.. .++++|+++..+..++. .+...++ ..+.++.++...++++++||+|+++.-.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~-n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 38999999999999998865 68999888765555443 3444454 345666666533445678999998731110
Q ss_pred ------------ccc------------ChHHHHHHHHHhccCCeEEEEEc
Q 036725 282 ------------WSA------------NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 282 ------------~~~------------d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.+ ....++.++.++|+|||++++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 000 01467899999999999999965
No 113
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.78 E-value=2.9e-08 Score=90.46 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=80.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-ccCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~~lp~ 265 (392)
.+..++.++++.+..+...-|||||||+|..+..|.+. ..+++|+|+.|++.++ ++.+..-....+. .-+||
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~-----~~e~egdlil~DMG~Glpf 108 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAV-----ERELEGDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHH-----HhhhhcCeeeeecCCCCCC
Confidence 34556666666655544558999999999999999887 6788887776555544 3333322223333 38999
Q ss_pred CCCccceEEecccccccc-------cCh----HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 266 PSRAFDMAHCSRCLIPWS-------AND----GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~-------~d~----~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+.++||.|++..++ .|. .++ ..++..++.+|++|+..++--.+.
T Consensus 109 rpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 109 RPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 99999999987555 453 122 256778999999999999965333
No 114
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.77 E-value=5.2e-08 Score=95.62 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=73.8
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
.....+.+.+...++. +|||||||+|.++..+++. .|+++|+++..+..++ +.+.+.+..++.++.++. ..
T Consensus 67 ~l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 67 SLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGIENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCChhhc
Confidence 3455566666544444 8999999999999999874 3889988775544433 334445666666666665 44
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+...++||+|++...+.+ ....+.+.|+|||.+++.
T Consensus 144 ~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 144 VPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred ccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEE
Confidence 444578999998754422 234577899999998884
No 115
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.77 E-value=6.5e-08 Score=87.65 Aligned_cols=88 Identities=19% Similarity=0.317 Sum_probs=60.3
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--------CCCCccceE
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--------YPSRAFDMA 273 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--------~~d~sFDlV 273 (392)
+|||+|||+|.++..++++ .++++|+++.. ..+.+.+...+. ..+ +++++||+|
T Consensus 35 ~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred EEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 8999999999998888764 48999998742 112233333332 221 457789999
Q ss_pred Eeccccc---ccccC-------hHHHHHHHHHhccCCeEEEEEc
Q 036725 274 HCSRCLI---PWSAN-------DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 274 ~~~~~l~---~~~~d-------~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++..+.+ .|..+ ...++.++.++|+|||++++..
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9864321 11111 2578999999999999999964
No 116
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.74 E-value=2.8e-08 Score=97.85 Aligned_cols=120 Identities=22% Similarity=0.317 Sum_probs=74.8
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc------C----CCcEEEE
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER------G----VPAVIGV 257 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r------g----~~~~~~~ 257 (392)
+|......+.... ...+|||+|||-|.-....... .++|+|++...+.++..+...-+ . ..+..+.
T Consensus 49 LI~~~~~~~~~~~-~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 49 LIQKYAKKVKQNR-PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp HHHHHCHCCCCTT-TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred HHHHHHHhhhccC-CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheec
Confidence 4444444333222 3458999999988766666555 78999998877777766652211 1 1233333
Q ss_pred eccc------cCCCCCCccceEEecccccccccCh---HHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 258 LGTI------KLPYPSRAFDMAHCSRCLIPWSAND---GMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 258 ~~~~------~lp~~d~sFDlV~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
.+.. .++.....||+|-|.+++|...... ..+|..+.+.|||||+|+.+.|..+
T Consensus 128 ~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 128 ADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp STTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 3332 1222235999999999997665444 4699999999999999999987663
No 117
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.72 E-value=5.2e-08 Score=93.31 Aligned_cols=104 Identities=19% Similarity=0.289 Sum_probs=75.7
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcC------CCcEEEEeccc------cCCCCCCccce
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERG------VPAVIGVLGTI------KLPYPSRAFDM 272 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg------~~~~~~~~~~~------~lp~~d~sFDl 272 (392)
.+||+|||-|.-+....+. .++++|++...+..++.+.-.-.+ .+++++..+.. .+++++.+||+
T Consensus 120 ~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDi 199 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDI 199 (389)
T ss_pred ccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcce
Confidence 7999999999777666655 789999987777666655433221 13455544432 45667777999
Q ss_pred EEecccccccccCh---HHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 273 AHCSRCLIPWSAND---GMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 273 V~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
|-|.+++|.-.... ..+|.++.+.|||||+|+-+.|..+
T Consensus 200 vScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 200 VSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred eeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 99999985433222 5799999999999999999998774
No 118
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.72 E-value=1.6e-07 Score=97.77 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=67.5
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...++ ..+.++.++...++++++||+|+++.-.+.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~-N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKS-NAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHH-HHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 48999999999999888753 79999988765555443 3344454 345555555433445678999999632211
Q ss_pred cc---------------------cC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 282 WS---------------------AN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 282 ~~---------------------~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. .+ ...++.++.++|+|||.+++..
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 00 00 1246788999999999999964
No 119
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.71 E-value=5.8e-07 Score=80.59 Aligned_cols=110 Identities=20% Similarity=0.108 Sum_probs=81.1
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~ 262 (392)
++.....+..+...+++ .++|||||+|+.+..++.. +++++|-++..+. ...+.+.+.+++++..+.++. .
T Consensus 20 ~EIRal~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~-~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALE-LIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHH-HHHHHHHHhCCCcEEEEeccchHh
Confidence 34444555666666665 8999999999999998832 8899987654332 233455566789999898887 3
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|+-.+ +||.|+.... ...+.+|+.+...|||||.+++..
T Consensus 97 L~~~~-~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 97 LPDLP-SPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred hcCCC-CCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 43222 7999998754 266789999999999999999964
No 120
>PRK00811 spermidine synthase; Provisional
Probab=98.71 E-value=3e-07 Score=88.94 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=68.7
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHc----CCCcEEEEeccc--cCCCCCCccceEE
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALER----GVPAVIGVLGTI--KLPYPSRAFDMAH 274 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~r----g~~~~~~~~~~~--~lp~~d~sFDlV~ 274 (392)
..++||+||||.|..+..++++ +|+++|+++..+..+...+.... .-+.+.++.++. -+...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 3458999999999999998876 58888887754444333222111 124455555554 2333567899999
Q ss_pred ecccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+... .++... ...+++++.+.|+|||++++..
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 8643 233222 1577899999999999999854
No 121
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.71 E-value=9.3e-08 Score=87.22 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=94.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--C--cEEEeCCccChHHHHHHHHHHcCCCcE----EEEecc
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--N--VITMSFAPRDSHEAQVQFALERGVPAV----IGVLGT 260 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vd~s~~d~~~a~~~~a~~rg~~~~----~~~~~~ 260 (392)
+.+.+.|.+.++.. +. +|||||+|+|..+.+++++ + ....|.++.-. ......+.+.+.+++ ......
T Consensus 12 ~pIl~vL~~~l~~~-~~--~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 12 DPILEVLKQYLPDS-GT--RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred hHHHHHHHHHhCcc-Cc--eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeecCC
Confidence 44666666666532 21 5999999999999999987 2 22333322110 112223344444332 221111
Q ss_pred ccCCC------CCCccceEEeccccccccc--ChHHHHHHHHHhccCCeEEEEEcCCCchh-------hhhhhcccC---
Q 036725 261 IKLPY------PSRAFDMAHCSRCLIPWSA--NDGMYMMEIDRVLRPGGYWVLSGPLINWR-------TNYQAWQRP--- 322 (392)
Q Consensus 261 ~~lp~------~d~sFDlV~~~~~l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~p~~~~~-------~~~~~w~~~--- 322 (392)
...|. ..++||+|+|..++ |+.+ ..+.+++.+.++|++||.|++.+|...-. ..++.|.+.
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp 166 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP 166 (204)
T ss_pred CCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC
Confidence 12333 35699999999887 4432 23789999999999999999988765321 122333222
Q ss_pred hHhHHHHHHHHHHHHHHcCceecce-----eccEEEEEe
Q 036725 323 IKELEEEQRKIEEIAKLLCWEKKHE-----KGETAIWQK 356 (392)
Q Consensus 323 ~e~l~~~~~~i~~l~~~l~W~~~~~-----~~~~~iw~K 356 (392)
.-.+++. +.++.++....++.... .+.+.||+|
T Consensus 167 ~~GiRD~-e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 167 EWGIRDI-EDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CcCccCH-HHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 2344444 35777777776654433 234777776
No 122
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.71 E-value=3.1e-08 Score=87.64 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=55.0
Q ss_pred EEeCCccChHHHHHHHHHHc--CCCcEEEEeccc-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 230 TMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 230 ~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
|+|+++.++..+..+...+. +..++.++.++. .+|+++++||+|++..+++++. +...+|+|+.|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEEE
Confidence 56666555544432221111 123455555555 8999999999999998886665 8999999999999999999886
Q ss_pred c
Q 036725 307 G 307 (392)
Q Consensus 307 ~ 307 (392)
.
T Consensus 81 d 81 (160)
T PLN02232 81 D 81 (160)
T ss_pred E
Confidence 4
No 123
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=5.8e-07 Score=84.04 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=78.9
Q ss_pred HHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccccCCCCC
Q 036725 194 ELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKLPYPS 267 (392)
Q Consensus 194 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~~lp~~d 267 (392)
.|...+...++. +|||.|.|+|.++++|+.. +++++++-+. ..+-+.+..++.++.+ +....++..-....
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d-~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIRED-FAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHH-HHHHHHHHHHHhccccceEEEeccccccccc
Confidence 445556666666 9999999999999999963 7888877653 3333333334445544 66677776444445
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+.||.|+.. .+ ++..++..+.++|+|||.+++..|..
T Consensus 162 ~~vDav~LD-----mp-~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 162 EDVDAVFLD-----LP-DPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cccCEEEEc-----CC-ChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 589999864 33 78889999999999999999988876
No 124
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.65 E-value=1.9e-07 Score=87.94 Aligned_cols=103 Identities=21% Similarity=0.299 Sum_probs=75.2
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSR 268 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~ 268 (392)
..+....... ..++|||||+|.|.++..++++ +++.+|+- ..++.+.+ .+.+.++.++..-++|.
T Consensus 90 ~~~~~~~d~~--~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp------~v~~~~~~--~~rv~~~~gd~f~~~P~- 158 (241)
T PF00891_consen 90 DILLEAFDFS--GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLP------EVIEQAKE--ADRVEFVPGDFFDPLPV- 158 (241)
T ss_dssp HHHHHHSTTT--TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-H------HHHCCHHH--TTTEEEEES-TTTCCSS-
T ss_pred hhhhcccccc--CccEEEeccCcchHHHHHHHHHCCCCcceeeccH------hhhhcccc--ccccccccccHHhhhcc-
Confidence 3444455433 3358999999999999999987 56666651 23334444 56778888887667766
Q ss_pred ccceEEecccccccccCh-HHHHHHHHHhccCC--eEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPG--GYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPG--G~lvl~~ 307 (392)
+|+|+..+++|.|.++. ..+|+.+++.|+|| |.+++..
T Consensus 159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred -ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 99999999999998555 68999999999999 9999965
No 125
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=3.6e-07 Score=88.15 Aligned_cols=114 Identities=23% Similarity=0.290 Sum_probs=76.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+.+++.+...+..... +|||+|||+|..+..++.+ .|+++|+++..+.-+ .+.|...++..+..+.++.--+
T Consensus 97 e~Lve~~l~~~~~~~~---~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A-~~Na~~~~l~~~~~~~~dlf~~ 172 (280)
T COG2890 97 ELLVEAALALLLQLDK---RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALA-RENAERNGLVRVLVVQSDLFEP 172 (280)
T ss_pred HHHHHHHHHhhhhcCC---cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHH-HHHHHHcCCccEEEEeeecccc
Confidence 5566665533332222 6999999999999999886 789999988544443 3455666654445555544334
Q ss_pred CCCCccceEEecccccccc-----c-----Ch--------------HHHHHHHHHhccCCeEEEEEc
Q 036725 265 YPSRAFDMAHCSRCLIPWS-----A-----ND--------------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~-----~-----d~--------------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. ++||+|+++--.++-. + ++ ..++.++.+.|+|||.+++..
T Consensus 173 ~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 173 LR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred cC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 43 3899999984332221 0 11 278899999999999999965
No 126
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.64 E-value=8.3e-07 Score=84.36 Aligned_cols=117 Identities=20% Similarity=0.234 Sum_probs=72.8
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI- 261 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~- 261 (392)
..+.+++.+...+....+ ..+|||+|||+|.++..+++. .++++|+++..+..++. .+...+. .+..++.
T Consensus 69 ~Te~Lv~~~l~~~~~~~~-~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~-N~~~~~~---~~~~~D~~ 143 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSG-TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARR-NLADAGG---TVHEGDLY 143 (251)
T ss_pred cHHHHHHHHHHhhcccCC-CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCC---EEEEeech
Confidence 345667766665542222 237999999999999988764 68999887765554443 2333332 2333443
Q ss_pred c-CCC-CCCccceEEecccccccc---------------------cC----hHHHHHHHHHhccCCeEEEEEcC
Q 036725 262 K-LPY-PSRAFDMAHCSRCLIPWS---------------------AN----DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 262 ~-lp~-~d~sFDlV~~~~~l~~~~---------------------~d----~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. ++- ..++||+|+++--..+.. .+ ...++..+.++|+|||.+++...
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2 221 135799999874222110 01 13677888899999999999753
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.64 E-value=1.3e-07 Score=84.26 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=66.5
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCc
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRA 269 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~s 269 (392)
+.+++.+....+. +|||+|||+|.++..++++ .++++|+++..+...+.... ..+++.++.++. .+++++.+
T Consensus 3 ~~i~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~---~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 3 DKIVRAANLRPGD--TVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA---AADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHhcCCCCcC--EEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc---cCCCEEEEECchhcCCccccC
Confidence 4555555544443 8999999999999999987 78999887644333322211 123455566665 77887778
Q ss_pred cceEEecccccccccChHHHHHHHHHh--ccCCeEEEEE
Q 036725 270 FDMAHCSRCLIPWSANDGMYMMEIDRV--LRPGGYWVLS 306 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d~~~~L~ei~Rv--LkPGG~lvl~ 306 (392)
||.|+++.-+ +. ....+..+.+- +.++|++++.
T Consensus 78 ~d~vi~n~Py-~~---~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 78 PYKVVGNLPY-NI---STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CCEEEECCCc-cc---HHHHHHHHHhcCCCcceEEEEEE
Confidence 9999987433 22 12333333322 4578888884
No 128
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=1.6e-07 Score=96.45 Aligned_cols=102 Identities=17% Similarity=0.284 Sum_probs=71.5
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEec----
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCS---- 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~---- 276 (392)
.+|||+|||+|..+..+++. .++++|+++.++..+. +.+.+.|+.++.++.++. .++ ++++||+|++.
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCT 329 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCC
Confidence 38999999999988777653 6999999887665543 345556776666666665 443 56789999952
Q ss_pred c--cc-----cccccC----------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 277 R--CL-----IPWSAN----------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 277 ~--~l-----~~~~~d----------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. .+ ..|... ...+|.++.++|||||++++++...
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 11 011111 1368999999999999999987655
No 129
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=3.8e-07 Score=93.37 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=76.1
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC----
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP---- 264 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp---- 264 (392)
+...+...++. +|||+|||+|..+..+++. .|+++|+++..+...+ +.+...|+.++.++..+. .++
T Consensus 244 ~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 244 VAPLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLKSIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCCeEEEEeCChhhcccccc
Confidence 33444444444 8999999999999888764 5899988776554433 344556776666666555 444
Q ss_pred CCCCccceEEecc------cccccc-----cC----------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 265 YPSRAFDMAHCSR------CLIPWS-----AN----------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 265 ~~d~sFDlV~~~~------~l~~~~-----~d----------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+..++||.|++.. ++.+-+ .. ...+|.++.++|||||++++++...
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4467899999631 111111 00 2478999999999999999987554
No 130
>PRK04457 spermidine synthase; Provisional
Probab=98.60 E-value=4.7e-07 Score=86.56 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=65.6
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cCCCCCCccceEEecccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~lp~~d~sFDlV~~~~~l 279 (392)
.++|||||||.|.++..+++. .++++|+++..+..+...+......+.+.++.++. -+.-..++||+|++...-
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~ 146 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFD 146 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCC
Confidence 358999999999999988765 68899886654333322221111124455565654 223224689999975211
Q ss_pred -ccccc--ChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 -IPWSA--NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 -~~~~~--d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..... ....+++++.++|+|||.+++..
T Consensus 147 ~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 147 GEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 11111 12689999999999999999953
No 131
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.60 E-value=3.9e-07 Score=83.32 Aligned_cols=98 Identities=26% Similarity=0.421 Sum_probs=71.2
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc--C--CCCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK--L--PYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~--l--p~~d~sFDlV~~~~~l 279 (392)
.+||||||.|.+...++.+ +++|+|+...-+..+ .+.+.+.+++++.++.++.. + -++++++|.|+..+-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a-~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP- 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKA-LRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP- 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHH-HHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHH-HHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-
Confidence 7999999999999999876 899999977555544 34555668888888887652 2 256799999998643
Q ss_pred cccccCh--------HHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSAND--------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+|+... ..+|.++.++|+|||.+.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 3565322 489999999999999999975
No 132
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=5.9e-07 Score=91.81 Aligned_cols=111 Identities=16% Similarity=0.261 Sum_probs=72.9
Q ss_pred HhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CCCC
Q 036725 196 ASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YPSR 268 (392)
Q Consensus 196 ~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~d~ 268 (392)
+..+...++. +|||+|||+|..+..++++ .|+++|+++..+..++ +.+...|+.. .++.++. .++ ++.+
T Consensus 237 ~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~-~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 237 ATLLAPQNGE--RVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKA-TVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHcCCCCCC--EEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCe-EEEEcCcccchhhcccC
Confidence 3344444443 8999999999999888875 6889988876555543 3444456554 3444444 433 3467
Q ss_pred ccceEEeccc-c----------cccccC----------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 269 AFDMAHCSRC-L----------IPWSAN----------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 269 sFDlV~~~~~-l----------~~~~~d----------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+||.|++..- . ..|... ...+|.++.++|||||++++++...
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 8999995321 0 012111 1368999999999999999987544
No 133
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.57 E-value=5.1e-07 Score=92.27 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=74.0
Q ss_pred HHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEE-EEeccc-cCCC--
Q 036725 194 ELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVI-GVLGTI-KLPY-- 265 (392)
Q Consensus 194 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~-~~~~~~-~lp~-- 265 (392)
.+...+...++. +|||+|||+|..+..+++. .++++|+++..+.... +.++..|+.... ...++. ..++
T Consensus 229 ~~~~~L~~~~g~--~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 229 WVATWLAPQNEE--TILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHhCCCCCC--eEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeccccccccccc
Confidence 344445544443 8999999999999888764 6899988876555543 344455665322 123333 3333
Q ss_pred CCCccceEEec------ccccccc-----cC----------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 266 PSRAFDMAHCS------RCLIPWS-----AN----------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 266 ~d~sFDlV~~~------~~l~~~~-----~d----------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++++||.|++. .++.+.+ .. ...+|.++.++|||||++++++...
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 56789999953 1221111 01 2479999999999999999987655
No 134
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=5.4e-07 Score=92.12 Aligned_cols=110 Identities=14% Similarity=0.204 Sum_probs=74.5
Q ss_pred hCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCcc
Q 036725 198 VIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAF 270 (392)
Q Consensus 198 ~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sF 270 (392)
.+...++. +|||+|||+|..+..+++. .|+++|+++..+.... +.+...|+.++.+...+. .++ +.+++|
T Consensus 232 ~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 232 LMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccC
Confidence 34433443 8999999999988877763 6999998876665543 344556776655555555 554 446789
Q ss_pred ceEEecc-c--cccccc------------------ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 271 DMAHCSR-C--LIPWSA------------------NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 271 DlV~~~~-~--l~~~~~------------------d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
|.|++.. | +-.+.. ....+|.++.+.|||||++++++...
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999631 1 101110 11467999999999999999987655
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.55 E-value=1.9e-06 Score=82.66 Aligned_cols=101 Identities=14% Similarity=0.110 Sum_probs=65.0
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC---CCcEEEEeccc--cCCCCCCccceEEec
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG---VPAVIGVLGTI--KLPYPSRAFDMAHCS 276 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg---~~~~~~~~~~~--~lp~~d~sFDlV~~~ 276 (392)
.++||+||||+|.++..+++. .++++|+++..+..+...+....+ .+.+.+..++. -+....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 449999999999999888765 588888876544443332222111 13333333332 122235789999986
Q ss_pred ccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
... +.... ...+++.+.++|+|||.+++..
T Consensus 153 ~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 153 STD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 432 22211 2578899999999999999974
No 136
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.54 E-value=3.1e-07 Score=87.88 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=69.9
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecc----
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSR---- 277 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~---- 277 (392)
+|||+|||+|..+..+++. .|+++|+++..+.... +.++..++.++.....+. .++...++||.|++..
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLI-ANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 8999999999999888763 6889988776554433 344455666655555554 4554556799999631
Q ss_pred --ccc-------cccc--------ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 278 --CLI-------PWSA--------NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 278 --~l~-------~~~~--------d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++. .+.+ ....+|.++.+.|||||++++++...
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 110 0110 11358999999999999999987655
No 137
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.52 E-value=6.9e-07 Score=91.73 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c--
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-- 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-- 262 (392)
++.+++.+.+.+....+. +|||+|||+|.++..|++. .++++|+++.++..+.. .+...++.++.++.++. .
T Consensus 282 ~e~l~~~vl~~l~~~~~~--~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDPQPGD--RVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcCCCCC--EEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhh
Confidence 456777777777644443 8999999999999999876 78999888876665443 44455666666666665 1
Q ss_pred --CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 --LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 --lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+++.+++||+|++.. +.. .....+..+.+ ++|+++++++-.+.
T Consensus 359 ~~~~~~~~~fD~Vi~dP---Pr~-g~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 359 TDQPWALGGFDKVLLDP---PRA-GAAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhhhhcCCCCEEEECc---CCc-ChHHHHHHHHh-cCCCeEEEEEeChH
Confidence 335567899999864 222 23455555555 69999999987655
No 138
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.52 E-value=1.7e-06 Score=79.42 Aligned_cols=119 Identities=9% Similarity=0.024 Sum_probs=74.6
Q ss_pred CccHHHHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc
Q 036725 185 PHGADAYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT 260 (392)
Q Consensus 185 ~~~~~~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~ 260 (392)
....+...+.+.+.+.. ..+ .+|||+|||+|.++..++.+ .|+++|.++..+..+ .+.++..+...+.++.++
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~~--~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a-~~Nl~~~~~~~v~~~~~D 110 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIVD--ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQL-IKNLATLKAGNARVVNTN 110 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcCC--CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHH-HHHHHHhCCCcEEEEEch
Confidence 44556666667666642 233 38999999999999865443 788998876443332 334444555555666665
Q ss_pred c--cCCCCCCccceEEecccccccccCh-HHHHHHHHH--hccCCeEEEEEcCC
Q 036725 261 I--KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDR--VLRPGGYWVLSGPL 309 (392)
Q Consensus 261 ~--~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~R--vLkPGG~lvl~~p~ 309 (392)
. .++...++||+|++.-- +.... ..++..+.. +|+|+|+++++.+.
T Consensus 111 ~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 4 23333457999998753 22222 345555544 37999999997543
No 139
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.50 E-value=5.9e-07 Score=92.24 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=74.0
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CC
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YP 266 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~ 266 (392)
+...+...++ .+|||+|||+|..+..+++. .++++|+++..+..+. +.+.+.|+..+.++.++. .++ ++
T Consensus 242 v~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 242 VAPALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc
Confidence 3344443344 38999999999999888764 6899988775554433 345556766666666665 332 33
Q ss_pred CCccceEEeccc------cc-----ccccC----------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRC------LI-----PWSAN----------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~------l~-----~~~~d----------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|++..- +. .|... ...+|.++.++|||||.+++++...
T Consensus 319 -~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 319 -EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred -ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 78999997521 00 01111 1357999999999999999886544
No 140
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.50 E-value=1.2e-06 Score=81.82 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=76.5
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc----cCCCCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI----KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~----~lp~~d~sFDlV~~~~~l 279 (392)
.+||||||.|.+...++++ +++||++...-+.. ..+.+.+.+++++.+...+. +.-+++++.|-|+..+.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~-~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK-ALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH-HHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 7999999999999999987 89999987754444 45567788886666666665 22245669999998754
Q ss_pred cccccCh--------HHHHHHHHHhccCCeEEEEEcC
Q 036725 280 IPWSAND--------GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 280 ~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+|+... ..+|+++.++|+|||.|.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 3676432 3799999999999999999763
No 141
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.44 E-value=6e-07 Score=84.41 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=70.2
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-c
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-K 262 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~ 262 (392)
.++..+++..+ + ++|||+|||+|+.+..|+.. .++++|+++.....+. +..++.++. .+.+..++. .
T Consensus 58 ~~L~~l~~~~~---~--~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda~~ 131 (234)
T PLN02781 58 LFLSMLVKIMN---A--KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHHhC---C--CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccHHH
Confidence 34444444433 2 38999999999877766653 7999999875444333 344455553 455555554 2
Q ss_pred -CC-----CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 263 -LP-----YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 -lp-----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++ .++++||+|+... ..+....++.++.++|||||++++.
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa----~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDA----DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECC----CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 22 1246899998752 2224467899999999999998885
No 142
>PLN02366 spermidine synthase
Probab=98.44 E-value=4.3e-06 Score=81.70 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=65.3
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHc-C--CCcEEEEecccc--C-CCCCCccceEEe
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALER-G--VPAVIGVLGTIK--L-PYPSRAFDMAHC 275 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~r-g--~~~~~~~~~~~~--l-p~~d~sFDlV~~ 275 (392)
.++||+||||.|..+..+++. +++.+|+++..+..+...+.... + -+.+.++.++.. + ..++++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 458999999999999999886 56777776643333322222111 1 245566666541 2 123678999998
Q ss_pred cccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 276 SRCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 276 ~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
... .++... ...+++.+.+.|+|||+++.-.
T Consensus 172 D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 172 DSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 632 232211 1468999999999999998743
No 143
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.42 E-value=4.6e-07 Score=83.18 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=79.1
Q ss_pred CcceEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcC-----CCcEEEEeccccCCCCCCccceEEecccc
Q 036725 205 MVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERG-----VPAVIGVLGTIKLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg-----~~~~~~~~~~~~lp~~d~sFDlV~~~~~l 279 (392)
...++||.|+|.|..+..|+-..+..||+. +..+..++.|++.- .-..++..+.+....+.++||+|.+..|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 345899999999999998877645555542 44555666666421 12344555555554346799999999999
Q ss_pred cccccCh-HHHHHHHHHhccCCeEEEEEcCCCc-----hhhhhhhcccChHhHHHHHHHHHHHHHHcCceeccee
Q 036725 280 IPWSAND-GMYMMEIDRVLRPGGYWVLSGPLIN-----WRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEK 348 (392)
Q Consensus 280 ~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~~-----~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~~~~ 348 (392)
.|..++. -.+|+.+...|+|+|++++-.+... +.+.-..+.|+.+ .+.++.++..++.+.+.
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~-------~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDE-------HFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHH-------HHHHHHHHCT-EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHH-------HHHHHHHHcCCEEEEec
Confidence 9988444 6899999999999999999432221 1112222444433 35556555566655543
No 144
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.42 E-value=2.4e-06 Score=79.95 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=63.6
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI- 261 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~- 261 (392)
......+..+++.+... -..+++||+|||+|.|+..++++ .++++|+++.++.... ........+...+.
T Consensus 57 sr~~~kL~~~l~~~~~~-~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l-----~~~~~v~~~~~~ni~ 130 (228)
T TIGR00478 57 SRGGEKLKEALEEFNID-VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL-----RQDERVKVLERTNIR 130 (228)
T ss_pred hhhHHHHHHHHHhcCCC-CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH-----hcCCCeeEeecCCcc
Confidence 33344555666665532 12348999999999999999887 6899988765444322 22111111111121
Q ss_pred -----cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 262 -----KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 -----~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.++..-..+|+++++..+ +|..+.+.|+| |.+++..
T Consensus 131 ~~~~~~~~~d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 131 YVTPADIFPDFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred cCCHhHcCCCceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEc
Confidence 122122367777665432 48899999999 8777654
No 145
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.38 E-value=2.8e-06 Score=83.41 Aligned_cols=116 Identities=14% Similarity=0.039 Sum_probs=76.1
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
+.+++.+.+.+....+ .+|||+|||+|.++..++++ .|+++|+++.++..+. +.++..+++++.++.++. .+..
T Consensus 159 ~~l~~~v~~~l~~~~~--~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 159 AQLYATARDWVRELPP--RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHHHhcCC--CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHH
Confidence 4455555555542233 38999999999999999987 7999998876655543 355566776667777765 3322
Q ss_pred -CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 266 -PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 266 -~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
..++||+|++..- .. .....+.++..-++|+++++++..+..
T Consensus 236 ~~~~~~D~Vv~dPP---r~-G~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 236 AQGEVPDLVLVNPP---RR-GIGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred hcCCCCeEEEECCC---CC-CccHHHHHHHHHcCCCeEEEEECCccc
Confidence 3457999998732 11 222333344455789999998876663
No 146
>PRK01581 speE spermidine synthase; Validated
Probab=98.37 E-value=2.1e-06 Score=85.02 Aligned_cols=97 Identities=16% Similarity=0.080 Sum_probs=66.4
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH--------c---CCCcEEEEeccc-c-CCCCC
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE--------R---GVPAVIGVLGTI-K-LPYPS 267 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~--------r---g~~~~~~~~~~~-~-lp~~d 267 (392)
..++||+||||+|..+..+++. +|+++|+++. +++.|++ + ..+.+.++.++. . +.-..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpe-----VIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGS-----MINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 3459999999999998888875 6788877654 4555553 1 124555555554 2 44446
Q ss_pred CccceEEeccccccccc-----ChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSA-----NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~-----d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++||+|++... .+... ....+++.+.+.|+|||+++...
T Consensus 225 ~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 225 SLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 78999998732 12110 11468899999999999998864
No 147
>PHA03411 putative methyltransferase; Provisional
Probab=98.33 E-value=2.5e-06 Score=81.41 Aligned_cols=92 Identities=11% Similarity=0.218 Sum_probs=63.5
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
+|||+|||+|.++..++.+ +++++|+++. +++.++++. +...++.++. .+. .+++||+|+++..+.+.
T Consensus 67 rVLDLGcGsGilsl~la~r~~~~~V~gVDisp~-----al~~Ar~n~-~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE-----FARIGKRLL-PEAEWITSDVFEFE-SNEKFDVVISNPPFGKI 139 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHhC-cCCEEEECchhhhc-ccCCCcEEEEcCCcccc
Confidence 8999999999998888663 6888877654 555555543 3334445554 443 35789999998766543
Q ss_pred ccC-------------------hHHHHHHHHHhccCCeEEEEE
Q 036725 283 SAN-------------------DGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 283 ~~d-------------------~~~~L~ei~RvLkPGG~lvl~ 306 (392)
... ...++..+.++|+|+|.+.+.
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 211 135678888999999987764
No 148
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.32 E-value=6e-06 Score=78.05 Aligned_cols=110 Identities=20% Similarity=0.256 Sum_probs=74.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP 264 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp 264 (392)
+..|+..+...+|. +|||.|.|+|+++..|+.. +|.+.|+...-...+.. ..+..|+ .++.+...+. ...
T Consensus 29 ~~~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~-n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 29 ISYILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARK-NFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH-HHHHTTCCTTEEEEES-GGCG-
T ss_pred HHHHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHH-HHHHcCCCCCceeEecceeccc
Confidence 45566777777776 9999999999999999874 78888876533333333 3334565 4677777666 444
Q ss_pred CC---CCccceEEecccccccccChHHHHHHHHHhc-cCCeEEEEEcCCC
Q 036725 265 YP---SRAFDMAHCSRCLIPWSANDGMYMMEIDRVL-RPGGYWVLSGPLI 310 (392)
Q Consensus 265 ~~---d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvL-kPGG~lvl~~p~~ 310 (392)
|+ ++.||.|+.. .+ ++..++..+.++| ||||+++.-.|..
T Consensus 106 ~~~~~~~~~DavfLD-----lp-~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 106 FDEELESDFDAVFLD-----LP-DPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp -STT-TTSEEEEEEE-----SS-SGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ccccccCcccEEEEe-----CC-CHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 53 3679999864 22 5666899999999 9999999988766
No 149
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.31 E-value=1e-06 Score=80.61 Aligned_cols=114 Identities=23% Similarity=0.426 Sum_probs=63.0
Q ss_pred HHHHHHHH-hhCCC-CCCCcceEEEECCcCc----hHHHHHhhC---------CcEEEeCCccChHHHHHHHHHH-----
Q 036725 189 DAYIEELA-SVIPM-DSGMVRTALDTGCGVA----SWGAYLFKK---------NVITMSFAPRDSHEAQVQFALE----- 248 (392)
Q Consensus 189 ~~~i~~l~-~~l~~-~~~~~~~VLDiGCG~G----~~~~~L~~~---------~v~~vd~s~~d~~~a~~~~a~~----- 248 (392)
+.+.+.++ .++.. ..+..-+|+.+||++| +++..|.+. .|+|+|+++ ..++.|++
T Consensus 13 ~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~-----~~L~~Ar~G~Y~~ 87 (196)
T PF01739_consen 13 EALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP-----SALEKARAGIYPE 87 (196)
T ss_dssp HHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H-----HHHHHHHHTEEEG
T ss_pred HHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH-----HHHHHHHhCCCCH
Confidence 44455555 33322 1234458999999999 555555551 567776654 44555542
Q ss_pred ---cCCC------------------------cEEEEeccc-cCCCCCCccceEEecccccccccCh-HHHHHHHHHhccC
Q 036725 249 ---RGVP------------------------AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRP 299 (392)
Q Consensus 249 ---rg~~------------------------~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkP 299 (392)
++++ .+.+...+. ..+.+.+.||+|+|.++++.+.+.. ..++..+.+.|+|
T Consensus 88 ~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p 167 (196)
T PF01739_consen 88 RSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP 167 (196)
T ss_dssp GGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE
T ss_pred HHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC
Confidence 1111 244444444 4234467899999999999887544 6899999999999
Q ss_pred CeEEEEEc
Q 036725 300 GGYWVLSG 307 (392)
Q Consensus 300 GG~lvl~~ 307 (392)
||+|++..
T Consensus 168 gG~L~lG~ 175 (196)
T PF01739_consen 168 GGYLFLGH 175 (196)
T ss_dssp EEEEEE-T
T ss_pred CCEEEEec
Confidence 99999953
No 150
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.30 E-value=1.6e-05 Score=73.73 Aligned_cols=108 Identities=21% Similarity=0.259 Sum_probs=74.4
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEe-ccc
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPA-VIGVL-GTI 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~-~~~ 261 (392)
..++..+++.. . .++||+||.+.|+.+.+|+.. +++++|+++.....+.. .-++.|+.. +.... ++.
T Consensus 48 g~~L~~L~~~~---~--~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~-n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 48 GALLRLLARLS---G--PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARE-NLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred HHHHHHHHHhc---C--CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHH-HHHHcCCcceEEEEecCcH
Confidence 33555555443 2 248999999999999999876 58999887754444433 334556544 44444 233
Q ss_pred --cCC-CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 262 --KLP-YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 --~lp-~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.+. ...++||+|+.. +...+...++..+.++|||||++++.
T Consensus 122 l~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 122 LDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 222 457899999875 34445578999999999999999995
No 151
>PRK03612 spermidine synthase; Provisional
Probab=98.29 E-value=8.3e-06 Score=85.42 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=65.6
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHc-----------CCCcEEEEeccc-c-CCCCCC
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALER-----------GVPAVIGVLGTI-K-LPYPSR 268 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~r-----------g~~~~~~~~~~~-~-lp~~d~ 268 (392)
.++|||||||+|..+..++++ +++++|+++. +++.+++. .-+.+..+.++. + +...++
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~-----vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~ 372 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA-----MTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE 372 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH-----HHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence 458999999999999988875 5778877654 44455441 114455555554 2 333357
Q ss_pred ccceEEecccccccccC-----hHHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSAN-----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d-----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+||+|++.... +..+. ...+++++.+.|||||.+++..
T Consensus 373 ~fDvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 373 KFDVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 89999997432 32211 1368899999999999999865
No 152
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.29 E-value=5.1e-06 Score=76.97 Aligned_cols=97 Identities=25% Similarity=0.379 Sum_probs=63.8
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC---------CC-------------------
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG---------VP------------------- 252 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg---------~~------------------- 252 (392)
....+|||||-.|.++..+++. .+.|+|+++.- ++.|++.- +.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~L-----I~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVL-----IQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHH-----HHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 3457999999999999999875 79999886653 44443210 01
Q ss_pred -----------cEEE-----Eeccc-cCCCCCCccceEEecccc----cccccCh-HHHHHHHHHhccCCeEEEEE
Q 036725 253 -----------AVIG-----VLGTI-KLPYPSRAFDMAHCSRCL----IPWSAND-GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 253 -----------~~~~-----~~~~~-~lp~~d~sFDlV~~~~~l----~~~~~d~-~~~L~ei~RvLkPGG~lvl~ 306 (392)
++.+ ++... -+.+....||+|.|..+- ..|.++. ..++..+.++|.|||+|++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1111 11111 223345689999986332 2344222 58999999999999999996
No 153
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.28 E-value=3.8e-06 Score=78.12 Aligned_cols=94 Identities=22% Similarity=0.364 Sum_probs=65.0
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHH-HHcCC-------C--------cEEEEeccc-cCCCCC
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFA-LERGV-------P--------AVIGVLGTI-KLPYPS 267 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a-~~rg~-------~--------~~~~~~~~~-~lp~~d 267 (392)
.+||..|||.|.-...|+++ .|+|+|+++. .++.+ .+++. . .+.+..++. .++-..
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~-----Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPT-----AIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTEEEEEEES-HH-----HHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CeEEEeCCCChHHHHHHHHCCCeEEEEecCHH-----HHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 38999999999999999998 7888877654 34443 33322 1 233445554 554333
Q ss_pred -CccceEEecccccccccCh-HHHHHHHHHhccCCeEEEE
Q 036725 268 -RAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 268 -~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl 305 (392)
++||+|+=..++.-++++. ..+.+.+.++|+|||.+++
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 5799999776666565555 7899999999999999544
No 154
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.26 E-value=7.5e-06 Score=83.78 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c--
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-- 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-- 262 (392)
.+.+++.+.+.+....+. +|||+|||+|.++..|++. .|+++|+++.++..+. +.+...++.++.++.++. .
T Consensus 277 ~~~l~~~~~~~l~~~~~~--~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~-~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 277 NEKLVDRALEALELQGEE--LVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQ-QNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHhccCCCC--EEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHH-HHHHHhCCCceEEEeCCHHHHH
Confidence 444566666666543433 8999999999999999876 7999998876555444 344455677777777775 2
Q ss_pred --CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 263 --LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 263 --lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+++.+++||+|+...- ...-...++..+.+ |+|++.++++..+
T Consensus 354 ~~~~~~~~~~D~vi~dPP---r~G~~~~~l~~l~~-l~~~~ivyvsc~p 398 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPP---RKGCAAEVLRTIIE-LKPERIVYVSCNP 398 (431)
T ss_pred HHHHhcCCCCCEEEECcC---CCCCCHHHHHHHHh-cCCCEEEEEcCCH
Confidence 2344568999987532 11113456666554 8999988887543
No 155
>PLN02476 O-methyltransferase
Probab=98.24 E-value=2e-05 Score=75.69 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=68.1
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc--cCC-C----CCCccceE
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI--KLP-Y----PSRAFDMA 273 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~--~lp-~----~d~sFDlV 273 (392)
++|||||+|+|+.+.+++.. .++++|.++..... ..++.++.|+. .+.+..++. -|+ + .+++||+|
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~-Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEV-AKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 48999999999999999874 58899887744333 33344556664 566666664 232 1 14689999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 274 HCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 274 ~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+... .......++..+.++|+|||.+++.
T Consensus 199 FIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 199 FVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 8752 3334578899999999999999985
No 156
>PLN02672 methionine S-methyltransferase
Probab=98.24 E-value=1.7e-05 Score=88.41 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=68.5
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC----------------CCcEEEEeccccCCCC
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG----------------VPAVIGVLGTIKLPYP 266 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg----------------~~~~~~~~~~~~lp~~ 266 (392)
.+|||+|||+|.++..++++ .++++|+++..+..+..+... .+ ...+.++.++..-++.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhhhcc
Confidence 48999999999999998875 699999988766655544332 21 1245667777633343
Q ss_pred C--CccceEEecccccccc---------------------------------cCh----HHHHHHHHHhccCCeEEEEEc
Q 036725 267 S--RAFDMAHCSRCLIPWS---------------------------------AND----GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d--~sFDlV~~~~~l~~~~---------------------------------~d~----~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+ ..||+|+++--.+... ++. ..++.+..++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 3 3699999983221100 011 367888999999999999975
No 157
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.22 E-value=3.5e-05 Score=71.03 Aligned_cols=106 Identities=18% Similarity=0.238 Sum_probs=72.7
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc--c
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI--K 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~--~ 262 (392)
++..+++... .++||+||+++|+.+.+|++. +++++|.++.... ...++.++.|. ..+.+..++. -
T Consensus 36 lL~~l~~~~~-----~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 36 LLQMLVRLTR-----PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHT------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred HHHHHHHhcC-----CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccHhh
Confidence 4455544432 238999999999999999974 7999998774333 33345555565 3566666654 2
Q ss_pred CC-----CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 263 LP-----YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 lp-----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++ .+.+.||+|+... ...+...++..+.+.|+|||.+++.
T Consensus 110 l~~l~~~~~~~~fD~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDA----DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEES----TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhccCCCceeEEEEcc----cccchhhHHHHHhhhccCCeEEEEc
Confidence 22 1235899999763 3335578899999999999999996
No 158
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.22 E-value=1.6e-06 Score=78.44 Aligned_cols=150 Identities=19% Similarity=0.196 Sum_probs=95.2
Q ss_pred EecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCc
Q 036725 176 RFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPA 253 (392)
Q Consensus 176 ~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~ 253 (392)
-|.|.|.||.-..+++...+.---+.-+....++||+|+|.|-.+..++.. .|.+. +.+..|+...++.+...
T Consensus 83 G~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyAT-----ElS~tMr~rL~kk~ynV 157 (288)
T KOG3987|consen 83 GFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYAT-----ELSWTMRDRLKKKNYNV 157 (288)
T ss_pred cccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHH-----HhhHHHHHHHhhcCCce
Confidence 355677777655555544443221222334568999999999999988876 55555 55666777777666433
Q ss_pred EEEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccC-CeEEEEE--cCCCchhh--hhhhcccChHhHHH
Q 036725 254 VIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRP-GGYWVLS--GPLINWRT--NYQAWQRPIKELEE 328 (392)
Q Consensus 254 ~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkP-GG~lvl~--~p~~~~~~--~~~~w~~~~e~l~~ 328 (392)
.. ..+.--.+-+||+|.|...+ .-..++..+|+++..+|+| .|..+++ -|...+.+ ....|.++.+.++.
T Consensus 158 l~----~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~ 232 (288)
T KOG3987|consen 158 LT----EIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLEN 232 (288)
T ss_pred ee----ehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHh
Confidence 22 22222224579999998766 3344788999999999999 8887774 35444443 22347777776665
Q ss_pred HHHHHHH
Q 036725 329 EQRKIEE 335 (392)
Q Consensus 329 ~~~~i~~ 335 (392)
..+..++
T Consensus 233 ~Gr~~ee 239 (288)
T KOG3987|consen 233 NGRSFEE 239 (288)
T ss_pred cCccHHH
Confidence 4444444
No 159
>PHA03412 putative methyltransferase; Provisional
Probab=98.20 E-value=1.4e-05 Score=74.70 Aligned_cols=90 Identities=10% Similarity=0.202 Sum_probs=58.2
Q ss_pred eEEEECCcCchHHHHHhhC-------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK-------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l 279 (392)
+|||+|||+|.++..++++ .|+++|+++. +.+.|++.. +...+...+. ..++ +++||+|+++--+
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~-----Al~~Ar~n~-~~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT-----YYKLGKRIV-PEATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH-----HHHHHHhhc-cCCEEEEcchhcccc-cCCccEEEECCCC
Confidence 8999999999999887652 6888877554 555555443 2333444444 4444 5789999998543
Q ss_pred cccc-cC----------hHHHHHHHHHhccCCeEEEE
Q 036725 280 IPWS-AN----------DGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 280 ~~~~-~d----------~~~~L~ei~RvLkPGG~lvl 305 (392)
.... .+ ...++..+.|++++|+. |+
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 2111 01 13578888887777775 55
No 160
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.19 E-value=5.8e-06 Score=80.57 Aligned_cols=97 Identities=19% Similarity=0.298 Sum_probs=66.8
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEE-EEeccc-cCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVI-GVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~-~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
++|||||||+|.++..-++. +|.++|.+. +..-..+.++.++...++ .+.+.. ++-+|..++|+|++-.+-.-
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence 48999999999888877776 899998864 445556667777776543 333333 44444789999998644311
Q ss_pred --cccChHHHHHHHHHhccCCeEEEE
Q 036725 282 --WSANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 282 --~~~d~~~~L~ei~RvLkPGG~lvl 305 (392)
+..-.+.+|..=.+.|+|||.++=
T Consensus 140 Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 140 LLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHhhhhhhhhhhhhhccCCCceEcc
Confidence 111225677777899999998865
No 161
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.17 E-value=4.5e-06 Score=90.37 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=69.8
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC--cEEEEeccc-c-CCCCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-K-LPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~~~~~~-~-lp~~d~sFDlV~~~~~l 279 (392)
++|||+|||+|.++..++.. .|+++|+++..+..+.. .+...++. .+.++.++. + +.-..++||+|++..-.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~-N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAER-NFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 48999999999999999976 58999988866665544 33444543 455566654 2 21115689999986321
Q ss_pred cc----------cccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 280 IP----------WSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 280 ~~----------~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
.. ...+...++..+.++|+|||.++++...
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 11 0112346788899999999999997643
No 162
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.16 E-value=9.2e-06 Score=84.73 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=76.8
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc---cCCCCCCccceEEeccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KLPYPSRAFDMAHCSRC 278 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~---~lp~~d~sFDlV~~~~~ 278 (392)
...+||||||.|.++..++.. +++|+|+...-+..+. +.+.+.++.++.+..++. ..-++++++|.|+..+-
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 348999999999999999987 8999998765444433 345667788877666654 22378899999998754
Q ss_pred ccccccCh--------HHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSAND--------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+|+... ..+|.++.++|||||.+.+.+
T Consensus 427 -DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 -DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 4775432 489999999999999999975
No 163
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.16 E-value=2.2e-05 Score=79.46 Aligned_cols=101 Identities=15% Similarity=0.077 Sum_probs=66.4
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC--cEEEEeccc-cC-C-C--CCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-KL-P-Y--PSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~~~~~~-~l-p-~--~d~sFDlV~~~ 276 (392)
++|||+|||+|.++...+.. .|+++|+++..+..+. +.+...++. .+.++.++. .. . + ..++||+|++.
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 48999999999998775543 6899999876655543 344445553 455666655 22 1 1 35689999987
Q ss_pred ccccccc--------cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 277 RCLIPWS--------ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 277 ~~l~~~~--------~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.-...-. .....++....++|+|||+++..+.
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4321111 0123455667899999999998653
No 164
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.16 E-value=2e-06 Score=83.02 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=63.9
Q ss_pred ceEEEECCcCc----hHHHHHhhC--------CcEEEeCCccChHHHHHHHHH---HcCC--------------------
Q 036725 207 RTALDTGCGVA----SWGAYLFKK--------NVITMSFAPRDSHEAQVQFAL---ERGV-------------------- 251 (392)
Q Consensus 207 ~~VLDiGCG~G----~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~---~rg~-------------------- 251 (392)
-+|+..||++| +++..|.+. .|+|+|++...+..|..-.-. -+++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 48999999999 455555442 477887765444333221000 0011
Q ss_pred -------CcEEEEeccc-cCCCC-CCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 036725 252 -------PAVIGVLGTI-KLPYP-SRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 252 -------~~~~~~~~~~-~lp~~-d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+.+...+. ..+++ .+.||+|+|.++++++.++. ..++..+.+.|+|||+|++.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1122333333 33443 57899999999998886443 78999999999999998884
No 165
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.14 E-value=2.1e-05 Score=79.01 Aligned_cols=113 Identities=13% Similarity=-0.009 Sum_probs=72.8
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-CCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-LPYP 266 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-lp~~ 266 (392)
+.+.+.+.+....+ .+|||+|||+|.++..++.+ .++++|+++..+..+. +.++..++.++.+..++. . ++-.
T Consensus 221 l~~~~~~~l~~~~~--~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~ 297 (374)
T TIGR02085 221 LYATARQWVREIPV--TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQ 297 (374)
T ss_pred HHHHHHHHHHhcCC--CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhc
Confidence 33444444432223 38999999999999999876 7899998876554433 455556666666666665 3 2212
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.++||+|+..- +...-...++..+. .++|++.++++..+.
T Consensus 298 ~~~~D~vi~DP---Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~ 337 (374)
T TIGR02085 298 MSAPELVLVNP---PRRGIGKELCDYLS-QMAPKFILYSSCNAQ 337 (374)
T ss_pred CCCCCEEEECC---CCCCCcHHHHHHHH-hcCCCeEEEEEeCHH
Confidence 24699999874 22212245555554 479999999987555
No 166
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.05 E-value=2.8e-05 Score=69.69 Aligned_cols=121 Identities=18% Similarity=0.042 Sum_probs=66.3
Q ss_pred CccHHHHHHHHHhhC----CCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC---CCc
Q 036725 185 PHGADAYIEELASVI----PMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG---VPA 253 (392)
Q Consensus 185 ~~~~~~~i~~l~~~l----~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg---~~~ 253 (392)
-+.+..+.+.+.+.. .......++|||+|||+|..+..++.. .|+..|..+ .-+.....++..+ ...
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~ 98 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGR 98 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT-------
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhcccccccc
Confidence 345555566666542 111223359999999999777776665 788888865 3333444444333 122
Q ss_pred EEEEeccc-c-C---CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 254 VIGVLGTI-K-L---PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 254 ~~~~~~~~-~-l---p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+....-+. . . ....++||+|+++.++. .......++.-+.++|+|+|.+++..+
T Consensus 99 v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 99 VSVRPLDWGDELDSDLLEPHSFDVILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp -EEEE--TTS-HHHHHHS-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccCcEEEecCcccccccccccCCEEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 22222222 1 1 12346899999999884 344558899999999999999777653
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.05 E-value=1.2e-05 Score=76.68 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=56.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
...++.+.+.+....+. +|||||||+|.++..|+++ .++++|+++.++....... . ..+++.++.++. .+++
T Consensus 15 ~~~~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~-~--~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGD--PVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDE-I--AAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCCCCcC--eEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHh-c--cCCCEEEEEeccccCCc
Confidence 45677777777654443 8999999999999999987 7888988665443322211 1 134555566555 6666
Q ss_pred CCCccceEEecccc
Q 036725 266 PSRAFDMAHCSRCL 279 (392)
Q Consensus 266 ~d~sFDlV~~~~~l 279 (392)
+ .||.|+++...
T Consensus 90 ~--~~d~Vv~NlPy 101 (258)
T PRK14896 90 P--EFNKVVSNLPY 101 (258)
T ss_pred h--hceEEEEcCCc
Confidence 4 48999988543
No 168
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.05 E-value=4.5e-05 Score=72.88 Aligned_cols=156 Identities=22% Similarity=0.309 Sum_probs=96.3
Q ss_pred HHHHHHHHhhCCC--CCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc---------------
Q 036725 189 DAYIEELASVIPM--DSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--------------- 249 (392)
Q Consensus 189 ~~~i~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--------------- 249 (392)
..+++.|.+.++. ......+||--|||.|.++-.++.+ .+.+.++|..|+-.. ++....
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceec
Confidence 4466777777763 2223348999999999999999998 566777765543221 121110
Q ss_pred --------------------------CCCcEEEEeccc-cCCCCC---CccceEEecccccccccChHHHHHHHHHhccC
Q 036725 250 --------------------------GVPAVIGVLGTI-KLPYPS---RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRP 299 (392)
Q Consensus 250 --------------------------g~~~~~~~~~~~-~lp~~d---~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkP 299 (392)
....+...+++. .+.-++ ++||+|++.+ ++....+.-.++..|.++|||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhcc
Confidence 001233344444 222223 6999999874 345565678999999999999
Q ss_pred CeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCceecceec
Q 036725 300 GGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKG 349 (392)
Q Consensus 300 GG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~~~~~ 349 (392)
||+||=.+|-........ ......++-..+++..+.+.+.|+.+.++.
T Consensus 195 gG~WIN~GPLlyh~~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 195 GGYWINFGPLLYHFEPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCEEEecCCccccCCCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 998888777663211110 001111233345688888899998876654
No 169
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.02 E-value=1.8e-05 Score=75.62 Aligned_cols=41 Identities=24% Similarity=0.463 Sum_probs=35.7
Q ss_pred CCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 036725 266 PSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+.||+|+|..+++.+.... .+++..++..|+|||+|++-
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 456799999999999887444 68999999999999999994
No 170
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.00 E-value=4.6e-05 Score=63.04 Aligned_cols=99 Identities=28% Similarity=0.385 Sum_probs=62.4
Q ss_pred EEEECCcCchH--HHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEecccc--CCCCC-CccceEEeccccc
Q 036725 209 ALDTGCGVASW--GAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK--LPYPS-RAFDMAHCSRCLI 280 (392)
Q Consensus 209 VLDiGCG~G~~--~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~~--lp~~d-~sFDlV~~~~~l~ 280 (392)
+||+|||+|.. ...+... .++++|+++.++......... .... ......+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 4444332 466776665444331111111 2211 1233333333 78877 589999 665665
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5553 7889999999999999999976443
No 171
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.00 E-value=7.8e-05 Score=70.43 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhCCCCC-CCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEe----
Q 036725 188 ADAYIEELASVIPMDS-GMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVL---- 258 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~-~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~---- 258 (392)
.+.+++.+.+.+.... .....+||+|||+|..+..|+.. .++++|.+...+.-+. +.|...++...+.+.
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEeccc
Confidence 3667777666654321 11127999999999988888765 7888877654433322 233333333322222
Q ss_pred -ccc--cCCCCCCccceEEeccccccccc-------------------------ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 259 -GTI--KLPYPSRAFDMAHCSRCLIPWSA-------------------------NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 259 -~~~--~lp~~d~sFDlV~~~~~l~~~~~-------------------------d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+. ..+..++.+|+++|+--.+.-.+ ..-.++.-+-|.|+|||.+++...
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 222 33455799999999843321110 001566778899999999999753
No 172
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.99 E-value=9.7e-06 Score=80.72 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=73.0
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
.++|+|||.|....+++.. ++++++.++.....+........--....++..+. ..||++++||.+-+..+..|..
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~ 192 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAP 192 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCC
Confidence 6899999999888777654 78888777655555444333222111222244454 8899999999999998887666
Q ss_pred cChHHHHHHHHHhccCCeEEEEE
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+...++.|++|+++|||+++..
T Consensus 193 -~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 193 -DLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -cHHHHHHHHhcccCCCceEEeH
Confidence 8999999999999999999984
No 173
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.98 E-value=8.1e-05 Score=73.05 Aligned_cols=93 Identities=20% Similarity=0.270 Sum_probs=57.5
Q ss_pred cHHHHHHHHHhhCCCC------CCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEE
Q 036725 187 GADAYIEELASVIPMD------SGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVI 255 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~------~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~ 255 (392)
+.-.|+..+.+++... .+...++||||||+|.+...|+.+ .++++|+++..+..++...+...++. .+.
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 3456777776665321 223458999999999887777654 78999998866666555443331343 233
Q ss_pred EE-eccc-cCC----CCCCccceEEecccc
Q 036725 256 GV-LGTI-KLP----YPSRAFDMAHCSRCL 279 (392)
Q Consensus 256 ~~-~~~~-~lp----~~d~sFDlV~~~~~l 279 (392)
+. ..+. .+. .+++.||+|+|+--+
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNPPf 199 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNPPF 199 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCCCC
Confidence 32 2222 211 246789999999644
No 174
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.94 E-value=4e-05 Score=75.11 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=73.6
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHH----cCCCcEEE-Ee-cccc
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALE----RGVPAVIG-VL-GTIK 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~----rg~~~~~~-~~-~~~~ 262 (392)
+...+.++.....|. .|||-=||||++.....-. +++|.|+ ...|++-|+. .+++.... .. +...
T Consensus 185 lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~Di-----d~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 185 LARAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIGSDI-----DERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEeecch-----HHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 344445555555565 8999999999998766554 6666655 4455554443 23444422 33 3448
Q ss_pred CCCCCCccceEEecccc-----cccc--cC-hHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCL-----IPWS--AN-DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l-----~~~~--~d-~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+|+++++||.|++..-. ..-. ++ ...+|..+.++|++||++++..|
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99999999999986311 0111 11 25899999999999999999887
No 175
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.93 E-value=2.6e-05 Score=75.02 Aligned_cols=81 Identities=11% Similarity=0.083 Sum_probs=55.4
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-cCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-KLPY 265 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~lp~ 265 (392)
..++.+++.+....+. +|||||||+|.++..|+++ .++++|+++.++.. ++++. .+.+.++.++. .+++
T Consensus 29 ~i~~~i~~~l~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~-----~~~~~~~~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAAGPQPGD--NVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPI-----LAETFAEDNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhcCCCCcC--eEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHH-----HHHhhccCceEEEEChhhcCCH
Confidence 4567777777654444 8999999999999999987 78999887654443 33321 14455566665 6666
Q ss_pred CCCccceEEecc
Q 036725 266 PSRAFDMAHCSR 277 (392)
Q Consensus 266 ~d~sFDlV~~~~ 277 (392)
++-.+|.|+++.
T Consensus 102 ~~~~~~~vv~Nl 113 (272)
T PRK00274 102 SELQPLKVVANL 113 (272)
T ss_pred HHcCcceEEEeC
Confidence 543358888873
No 176
>PLN02823 spermine synthase
Probab=97.92 E-value=8.4e-05 Score=73.49 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=64.7
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC--------CCcEEEEeccc--cCCCCCCcc
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG--------VPAVIGVLGTI--KLPYPSRAF 270 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg--------~~~~~~~~~~~--~lp~~d~sF 270 (392)
..++||.||+|.|..+..+++. +++++|+++. .++.+++.. -+.+.++.++. -+....++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~-----vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE-----VVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH-----HHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 3458999999999999988875 5788877664 444444321 24455555554 334446789
Q ss_pred ceEEeccccccccc------ChHHHHH-HHHHhccCCeEEEEEc
Q 036725 271 DMAHCSRCLIPWSA------NDGMYMM-EIDRVLRPGGYWVLSG 307 (392)
Q Consensus 271 DlV~~~~~l~~~~~------d~~~~L~-ei~RvLkPGG~lvl~~ 307 (392)
|+|++.. ..++.. ....+++ .+.+.|+|||++++..
T Consensus 178 DvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 178 DVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999863 222211 1245777 8999999999998854
No 177
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.90 E-value=3.2e-05 Score=73.23 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=70.9
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc--
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-- 261 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-- 261 (392)
.++..+++... .++||+||+++|+.+.+|+.. +++++|..+..... ..+...+.|+ ..+.++.++.
T Consensus 69 ~lL~~l~~~~~-----ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~-Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 69 QFLNMLLKLIN-----AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYEL-GLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHhC-----CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-HHHHHHHCCCCCceEEEeccHHH
Confidence 34555554433 238999999999999888764 68999886633332 2333344554 4566666654
Q ss_pred cCCC------CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 262 KLPY------PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 ~lp~------~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.|+- ..++||+|+... .......++..+.+.|+|||++++.
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHhccccCCcccEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 2321 136899999763 3334467888889999999998884
No 178
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.87 E-value=1.6e-05 Score=75.54 Aligned_cols=93 Identities=25% Similarity=0.313 Sum_probs=66.8
Q ss_pred eEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccccCh-
Q 036725 208 TALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSAND- 286 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~- 286 (392)
.+||+|||.|-++..=..-.+++.|+ ....+..++..+.. ...+.+...+|+++.+||.+++..+++|+....
T Consensus 48 v~~d~gCGngky~~~~p~~~~ig~D~-----c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 48 VGLDVGCGNGKYLGVNPLCLIIGCDL-----CTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred eeeecccCCcccCcCCCcceeeecch-----hhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHHH
Confidence 79999999996543221113556644 44444455555533 344555569999999999999999998887433
Q ss_pred -HHHHHHHHHhccCCeEEEEE
Q 036725 287 -GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 287 -~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+++|+.|+|||||...+.
T Consensus 122 R~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHhcCCCceEEE
Confidence 68999999999999997774
No 179
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.86 E-value=0.00017 Score=66.25 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhCCCCCC--CcceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 188 ADAYIEELASVIPMDSG--MVRTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~--~~~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
..-.++.+.+....... ...++|||||=+......-... .|+.+|+.+... . +..++-...|
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~--------------~-I~qqDFm~rp 96 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQHP--------------G-ILQQDFMERP 96 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCCCC--------------C-ceeeccccCC
Confidence 34455555555432221 1248999998755433222222 688888865321 1 2233333444
Q ss_pred C---CCCccceEEecccccccccCh---HHHHHHHHHhccCCeE-----EEEEcCCCchhhhhhhcccChHhHHHHHHHH
Q 036725 265 Y---PSRAFDMAHCSRCLIPWSAND---GMYMMEIDRVLRPGGY-----WVLSGPLINWRTNYQAWQRPIKELEEEQRKI 333 (392)
Q Consensus 265 ~---~d~sFDlV~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~-----lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i 333 (392)
. ++++||+|.++.+|...+ ++ +.+++.+.+.|+|+|. |+++.|........ + -....+
T Consensus 97 lp~~~~e~FdvIs~SLVLNfVP-~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSR--y--------~~~~~l 165 (219)
T PF11968_consen 97 LPKNESEKFDVISLSLVLNFVP-DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSR--Y--------MTEERL 165 (219)
T ss_pred CCCCcccceeEEEEEEEEeeCC-CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccc--c--------cCHHHH
Confidence 4 378999999999885443 55 6899999999999999 88887766321110 0 012346
Q ss_pred HHHHHHcCceecceec----cEEEEEecC
Q 036725 334 EEIAKLLCWEKKHEKG----ETAIWQKRI 358 (392)
Q Consensus 334 ~~l~~~l~W~~~~~~~----~~~iw~KP~ 358 (392)
.++...+.+..+..+. ..-+|+|..
T Consensus 166 ~~im~~LGf~~~~~~~~~Kl~y~l~r~~~ 194 (219)
T PF11968_consen 166 REIMESLGFTRVKYKKSKKLAYWLFRKSG 194 (219)
T ss_pred HHHHHhCCcEEEEEEecCeEEEEEEeecC
Confidence 6777788887665543 244566643
No 180
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.86 E-value=5.5e-05 Score=73.52 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=58.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
...++.+++.+....+. +|||||||+|.++..|+++ .++++|+++..+..+..+++.....+.+.++.++. ..++
T Consensus 22 ~~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 34677777777655554 8999999999999999886 79999887765554443332221135566677766 5554
Q ss_pred CCCccceEEecc
Q 036725 266 PSRAFDMAHCSR 277 (392)
Q Consensus 266 ~d~sFDlV~~~~ 277 (392)
..||.|+++.
T Consensus 100 --~~~d~VvaNl 109 (294)
T PTZ00338 100 --PYFDVCVANV 109 (294)
T ss_pred --cccCEEEecC
Confidence 3689999874
No 181
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.85 E-value=0.00015 Score=69.37 Aligned_cols=170 Identities=21% Similarity=0.281 Sum_probs=99.6
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCchhhhh-hhccceeccCCeEEecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEE
Q 036725 133 KGYATPFRWPKSRDYVPYANAPYKSLTVEK-AVQNWIQYEGNVFRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALD 211 (392)
Q Consensus 133 ~gY~~Pl~wp~s~~~~wy~~~p~~~l~~~k-~~q~w~~~~~~~~~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLD 211 (392)
-|+..-|---.+.|++ |.|.|.......+ -++.|+.--|=+ +-.+-....+..+..-+..+.. .+..-+|||
T Consensus 69 lG~~tGFDSGstLDYV-YrN~p~G~~~~GrliDr~yLnaiGWr-----GIR~Rk~~l~~~i~~ai~~L~~-~g~pvrIlD 141 (311)
T PF12147_consen 69 LGLETGFDSGSTLDYV-YRNQPQGKGPLGRLIDRNYLNAIGWR-----GIRQRKVHLEELIRQAIARLRE-QGRPVRILD 141 (311)
T ss_pred echhcCCCCcchHhHH-hcCCCCCcchHHHHHHHhhhcccchH-----HHHHHHHHHHHHHHHHHHHHHh-cCCceEEEE
Confidence 3566666666667765 6677765544332 234444311000 0000001112223332333332 233458999
Q ss_pred ECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHHHcCCCcE-EEEeccc--cCCCC--CCccceEEeccccc
Q 036725 212 TGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFALERGVPAV-IGVLGTI--KLPYP--SRAFDMAHCSRCLI 280 (392)
Q Consensus 212 iGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~~rg~~~~-~~~~~~~--~lp~~--d~sFDlV~~~~~l~ 280 (392)
|.||.|.+....+.. .|.-.|+++..+... .+.++++|+..+ .+..++. ...+. +-..++++.+...+
T Consensus 142 IAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g-~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~E 220 (311)
T PF12147_consen 142 IAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKG-RALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYE 220 (311)
T ss_pred eccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHH-HHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchh
Confidence 999999877665543 577788887655543 447788888665 6666664 11122 34568999887665
Q ss_pred ccccCh--HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 281 PWSAND--GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 281 ~~~~d~--~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
-+.++. ...|..+.+.|.|||+++.+..|.
T Consensus 221 lF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 221 LFPDNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred hCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 555333 467999999999999999987443
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.84 E-value=0.00015 Score=68.88 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=53.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~-~l 263 (392)
...++.+++.+....+. +|||||||+|.++..|+++ .++++|+++..+ +.+.++. .+.+..+.++. .+
T Consensus 15 ~~i~~~i~~~~~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~-----~~l~~~~~~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGD--VVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLA-----EILRKLLSLYERLEVIEGDALKV 87 (253)
T ss_pred HHHHHHHHHhcCCCCcC--EEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHH-----HHHHHHhCcCCcEEEEECchhcC
Confidence 44667777777654443 8999999999999999987 788888866433 3333221 24555566665 66
Q ss_pred CCCCCccc---eEEecc
Q 036725 264 PYPSRAFD---MAHCSR 277 (392)
Q Consensus 264 p~~d~sFD---lV~~~~ 277 (392)
+++ +|| +|+++.
T Consensus 88 ~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 88 DLP--DFPKQLKVVSNL 102 (253)
T ss_pred Chh--HcCCcceEEEcC
Confidence 664 466 777764
No 183
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.82 E-value=5.4e-05 Score=67.95 Aligned_cols=108 Identities=23% Similarity=0.376 Sum_probs=62.2
Q ss_pred cHHHHHHHHHhhCC-CCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc
Q 036725 187 GADAYIEELASVIP-MDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT 260 (392)
Q Consensus 187 ~~~~~i~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~ 260 (392)
++...+.++.+... ...+...++||+||++|.|+..+.++ .|+++|+.+.+.. +......++
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~------------~~~~~i~~d 71 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL------------QNVSFIQGD 71 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------------TTEEBTTGG
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc------------cceeeeecc
Confidence 34455666777766 33445569999999999999999987 5889998764111 111111111
Q ss_pred ------c-c----CCCCCCccceEEeccccccccc----Ch-------HHHHHHHHHhccCCeEEEEEc
Q 036725 261 ------I-K----LPYPSRAFDMAHCSRCLIPWSA----ND-------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 261 ------~-~----lp~~d~sFDlV~~~~~l~~~~~----d~-------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. . ++-..+.||+|+|..+. .... +. ...+.-+.+.|+|||.+++-.
T Consensus 72 ~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 72 ITNPENIKDIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp GEEEEHSHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cchhhHHHhhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 1 1 11112689999997532 1111 11 134455567799999988854
No 184
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.80 E-value=0.00018 Score=65.19 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=65.3
Q ss_pred eEEEECCcCchHHHHHh----hCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCGVASWGAYLF----KKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~----~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+++|||+|.|.=+..|+ +.+++-+|-...-.. -..+.+.+.+++++....+....+....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~---- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA---- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----
Confidence 79999999995444433 347888887654322 233455677888888777776445567899999987543
Q ss_pred cChHHHHHHHHHhccCCeEEEEE
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
....++.-+...|++||.+++.
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCCEEEEE
Confidence 5567888899999999999885
No 185
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.80 E-value=5.3e-05 Score=74.06 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=68.5
Q ss_pred cceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
....+|+|.|.|..+..+... ++.++++....+.+ .|...+ +.+..+.++.-...|.+ |+|++-++++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~----~a~~~~-~gV~~v~gdmfq~~P~~--daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLA----AAPYLA-PGVEHVAGDMFQDTPKG--DAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHh----hhhhhc-CCcceecccccccCCCc--CeEEEEeecccCC
Confidence 458999999999999998886 67788774433322 222222 33444455541113333 5999999999999
Q ss_pred cCh-HHHHHHHHHhccCCeEEEEEcC
Q 036725 284 AND-GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 284 ~d~-~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++. .++|+.++..|+|||.+++...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 544 7999999999999999999754
No 186
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.78 E-value=3.6e-05 Score=71.07 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=64.3
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHH----cCC--CcEEEEeccc-c--CCCCCCccceEE
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALE----RGV--PAVIGVLGTI-K--LPYPSRAFDMAH 274 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~----rg~--~~~~~~~~~~-~--lp~~d~sFDlV~ 274 (392)
.+|||...|-|++++.-+++ .|++++.++. -++.|.- +++ .++.++.++. + -.|+|.+||+|+
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~-----VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITVEKDPN-----VLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC-----eEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 39999999999999999888 5667766553 2333332 222 2345666665 2 358899999998
Q ss_pred eccccccccc--ChHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSA--NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-.--...... .-+.+.+|++|+|||||.++-.+
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 4321111111 22689999999999999987744
No 187
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.78 E-value=0.00015 Score=66.59 Aligned_cols=120 Identities=16% Similarity=0.172 Sum_probs=74.6
Q ss_pred eEEecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh--C--CcEEEeCCccChHHHHHHHHHHc
Q 036725 174 VFRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK--K--NVITMSFAPRDSHEAQVQFALER 249 (392)
Q Consensus 174 ~~~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~--~--~v~~vd~s~~d~~~a~~~~a~~r 249 (392)
.+.+.-...+|.++...-..++.+.+. ++. +|||+-||.|.|+..+++ + .|+++|++|. .-+.+.+.++.+
T Consensus 74 ~f~~D~~kvyfs~rl~~Er~Ri~~~v~--~~e--~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~-a~~~L~~Ni~lN 148 (200)
T PF02475_consen 74 RFKVDLSKVYFSPRLSTERRRIANLVK--PGE--VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD-AVEYLKENIRLN 148 (200)
T ss_dssp EEEEETTTS---GGGHHHHHHHHTC----TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH-HHHHHHHHHHHT
T ss_pred EEEEccceEEEccccHHHHHHHHhcCC--cce--EEEEccCCccHHHHHHhhhcCccEEEEecCCHH-HHHHHHHHHHHc
Confidence 344444566676666656667776644 444 899999999999999998 3 6999999884 344455566666
Q ss_pred CCCc-EEEEeccc-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEE
Q 036725 250 GVPA-VIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWV 304 (392)
Q Consensus 250 g~~~-~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lv 304 (392)
++.. +....++. .+.- .+.||-|++.. +..-..+|..+.+++|+||.+-
T Consensus 149 kv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 149 KVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred CCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 6544 44566666 3433 88999998753 2233468899999999999874
No 188
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.77 E-value=0.00022 Score=64.30 Aligned_cols=112 Identities=19% Similarity=0.258 Sum_probs=68.7
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----C---------cEEEeCCccChHHHHHHHHHHcCCC-cEE
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----N---------VITMSFAPRDSHEAQVQFALERGVP-AVI 255 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~---------v~~vd~s~~d~~~a~~~~a~~rg~~-~~~ 255 (392)
.+...++.+.....+. .+||--||+|++....+.. . +.+.|+++..+..+.. .+...++. .+.
T Consensus 15 ~lA~~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~-N~~~ag~~~~i~ 91 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARE-NLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHH-HHHHTT-CGGEE
T ss_pred HHHHHHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHH-HHHhcccCCceE
Confidence 3445555555544444 8999999999988654432 3 5699998876665444 44555553 344
Q ss_pred EEeccc-cCCCCCCccceEEecccccccccC------h----HHHHHHHHHhccCCeEEEEEc
Q 036725 256 GVLGTI-KLPYPSRAFDMAHCSRCLIPWSAN------D----GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 256 ~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d------~----~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+...+. ++++.++++|.|+++. +|... . ..+++++.|+|++..++++..
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred EEecchhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 455444 8888889999999984 33211 1 367899999999955555543
No 189
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.76 E-value=0.00052 Score=62.43 Aligned_cols=115 Identities=9% Similarity=-0.046 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-
Q 036725 188 ADAYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI- 261 (392)
Q Consensus 188 ~~~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~- 261 (392)
.+...+.+...+.. ..+ .++||++||+|.++..++.+ .++++|.++..+... .+.+...+.. .+.+...+.
T Consensus 33 ~~~vrea~f~~l~~~~~g--~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~-~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 33 TRVVRELFFNILRPEIQG--AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTL-KENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred hHHHHHHHHHHHHHhcCC--CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHH-HHHHHHhCCcccEEEEehhHH
Confidence 34445555555532 223 38999999999999999987 688898876443332 2334444543 344444444
Q ss_pred c-CC-C-CC-CccceEEeccccccccc-ChHHHHHHHH--HhccCCeEEEEEcC
Q 036725 262 K-LP-Y-PS-RAFDMAHCSRCLIPWSA-NDGMYMMEID--RVLRPGGYWVLSGP 308 (392)
Q Consensus 262 ~-lp-~-~d-~sFDlV~~~~~l~~~~~-d~~~~L~ei~--RvLkPGG~lvl~~p 308 (392)
+ +. + .. ..||+|+..-- +.. ....++..+. .+|+++|.+++..+
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPP---y~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPP---FFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHHhhccCCCceEEEECcC---CCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2 22 1 12 24788876532 221 2244444443 47899999998653
No 190
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.72 E-value=0.00014 Score=73.25 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=66.2
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
+|||++||+|.++..++.. .|+++|+++..+.. ..+.++.+++....+..++. .+....+.||+|+.. ++
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~-a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD----P~ 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGVEKVTLNDINPDAVEL-IKKNLELNGLENEKVFNKDANALLHEERKFDVVDID----PF 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC----CC
Confidence 7999999999999998754 58999887754433 23344455666555555554 321114679999875 33
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEc
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. .+..++....+.+++||++.++.
T Consensus 135 G-s~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 G-SPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CcHHHHHHHHHHhcCCCEEEEEe
Confidence 2 45678888788899999999974
No 191
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.71 E-value=8.2e-05 Score=70.63 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=65.4
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHH--------------H-HHHcCC-
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQ--------------F-ALERGV- 251 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~--------------~-a~~rg~- 251 (392)
.++.+.+.+....-.+.++||||||.-.+-..-+.. +|+..|+++....+-+.. . +...|.
T Consensus 42 ~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 42 FLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 344444444433333568999999996553322222 788888876543322111 1 111110
Q ss_pred -----------CcEE-EEe-ccc-cCCCCC-----CccceEEecccccccccCh---HHHHHHHHHhccCCeEEEEEc
Q 036725 252 -----------PAVI-GVL-GTI-KLPYPS-----RAFDMAHCSRCLIPWSAND---GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 252 -----------~~~~-~~~-~~~-~lp~~d-----~sFDlV~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+. ++. +.. .-|+.. ..||+|++.+|++...++. ...++.+.++|||||.|++.+
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0121 122 222 333433 3599999999997766666 478999999999999999964
No 192
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.71 E-value=0.0005 Score=70.98 Aligned_cols=105 Identities=18% Similarity=0.152 Sum_probs=70.2
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCccceEE----e
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAFDMAH----C 275 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sFDlV~----~ 275 (392)
.+|||+++|.|.=+..+++. .+++.|+++.-+. ...+.....|+.++.....+. .+. ...+.||.|+ |
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~-~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVK-VLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 38999999999888887764 5888888764333 334455566877765554443 332 2246799999 5
Q ss_pred cccc---------cccccC--------hHHHHHHHHHhccCCeEEEEEcCCCch
Q 036725 276 SRCL---------IPWSAN--------DGMYMMEIDRVLRPGGYWVLSGPLINW 312 (392)
Q Consensus 276 ~~~l---------~~~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~~~ 312 (392)
+..- ..|..+ ...+|..+.+.|||||+++.++...+.
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 4211 112111 137899999999999999999877644
No 193
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00012 Score=66.61 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=58.9
Q ss_pred CCCcceEEEECCcCchHHHHHhhC----C--cEEEeCCccChHHHHHHHHHHcC--------------CCcEEEEecccc
Q 036725 203 SGMVRTALDTGCGVASWGAYLFKK----N--VITMSFAPRDSHEAQVQFALERG--------------VPAVIGVLGTIK 262 (392)
Q Consensus 203 ~~~~~~VLDiGCG~G~~~~~L~~~----~--v~~vd~s~~d~~~a~~~~a~~rg--------------~~~~~~~~~~~~ 262 (392)
+|. +.||+|.|+|+++..++.. . ..|++. .+..++.+++.- .....++.++-+
T Consensus 82 pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh-----~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr 154 (237)
T KOG1661|consen 82 PGA--SFLDVGSGSGYLTACFARMVGATGGNVHGIEH-----IPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR 154 (237)
T ss_pred cCc--ceeecCCCccHHHHHHHHHhcCCCccccchhh-----hHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc
Confidence 554 8999999999999887743 2 255544 444554444321 123445666664
Q ss_pred CCC-CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPY-PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~-~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.-+ +...||.||+..... ...+++...|++||.+++-.
T Consensus 155 ~g~~e~a~YDaIhvGAaa~-------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 155 KGYAEQAPYDAIHVGAAAS-------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ccCCccCCcceEEEccCcc-------ccHHHHHHhhccCCeEEEee
Confidence 433 467899999974332 33477778899999998843
No 194
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00056 Score=66.01 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=71.9
Q ss_pred HHHHHHhhCC-CCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC--------CCcEEEE
Q 036725 191 YIEELASVIP-MDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG--------VPAVIGV 257 (392)
Q Consensus 191 ~i~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg--------~~~~~~~ 257 (392)
....++.+++ ...+..++||=||.|.|..+..+++. +++.+|+++ +.++.+++.- -|.+..+
T Consensus 61 ~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-----~Vi~~ar~~l~~~~~~~~dpRv~i~ 135 (282)
T COG0421 61 IYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-----AVIELARKYLPEPSGGADDPRVEII 135 (282)
T ss_pred HHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-----HHHHHHHHhccCcccccCCCceEEE
Confidence 3334444443 33445579999999999999999987 678887654 4555665431 1334444
Q ss_pred eccc--cCCCCCCccceEEeccccccccc----ChHHHHHHHHHhccCCeEEEEEc
Q 036725 258 LGTI--KLPYPSRAFDMAHCSRCLIPWSA----NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 258 ~~~~--~lp~~d~sFDlV~~~~~l~~~~~----d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.++. -+.-...+||+|++.. ..+..+ ....+++.+.|.|+++|+++.-.
T Consensus 136 i~Dg~~~v~~~~~~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 136 IDDGVEFLRDCEEKFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred eccHHHHHHhCCCcCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 4443 2222234899999763 222111 11689999999999999999963
No 195
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00031 Score=63.16 Aligned_cols=68 Identities=21% Similarity=0.180 Sum_probs=44.9
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l 279 (392)
++|+|+|||||.++...+-. .|+++|+++.. .+...+.+.+ +...+.++..+. +. ...||.|+++--+
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a-~ei~r~N~~~-l~g~v~f~~~dv~~~---~~~~dtvimNPPF 118 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEA-LEIARANAEE-LLGDVEFVVADVSDF---RGKFDTVIMNPPF 118 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHH-HHHHHHHHHh-hCCceEEEEcchhhc---CCccceEEECCCC
Confidence 48999999999877655443 89999998743 3334445555 334455555554 33 5678899887433
No 196
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.64 E-value=0.00024 Score=72.95 Aligned_cols=96 Identities=17% Similarity=0.264 Sum_probs=58.6
Q ss_pred ceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~ 276 (392)
..|||||||+|.+....++. +|++++-++...... .+..+..+. ..+.++.++. .+..| ..+|+|++=
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l-~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTL-QKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHH-HHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHH-HHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 47999999999887554432 789998876433222 223244444 5667777776 45443 489999985
Q ss_pred cccccccc--ChHHHHHHHHHhccCCeEEEE
Q 036725 277 RCLIPWSA--NDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 277 ~~l~~~~~--d~~~~L~ei~RvLkPGG~lvl 305 (392)
..- .+.. -....|....|.|||||.++=
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEeC
Confidence 322 2221 224678999999999998764
No 197
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.61 E-value=0.00027 Score=62.24 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=75.4
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
....+.+++.+....+ .-||++|.|+|.++.+++++ .+++++.++ .......+.- +.+.++.++. .
T Consensus 34 s~lA~~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~-----dF~~~L~~~~-p~~~ii~gda~~ 105 (194)
T COG3963 34 SILARKMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSP-----DFVCHLNQLY-PGVNIINGDAFD 105 (194)
T ss_pred HHHHHHHHhccCcccC--CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH-----HHHHHHHHhC-CCccccccchhh
Confidence 4456667777664444 37999999999999999998 556665544 3443333332 3333444443 3
Q ss_pred CC-----CCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 263 LP-----YPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp-----~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+. +.+..||.|+|..-+..++... -++|+++...|++||.++.-.
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 32 5678899999976554554333 589999999999999998854
No 198
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00096 Score=59.59 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=66.3
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~ 281 (392)
..+||||||+|..+..|++. -..++|++|. ..++..+.|+.++..... +..+..-.+..++.|+++-+.-..+
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~-A~~~Tl~TA~~n~~~~~~-V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPE-ALEATLETARCNRVHIDV-VRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHH-HHHHHHHHHHhcCCccce-eehhHHhhhccCCccEEEECCCcCc
Confidence 37999999999999999887 3567888774 334455566666544322 3333322233489999987743322
Q ss_pred ccc----------------C----hHHHHHHHHHhccCCeEEEEEcC
Q 036725 282 WSA----------------N----DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 282 ~~~----------------d----~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
-.+ + .++++..+..+|.|.|.|++..-
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 111 1 13678888899999999999753
No 199
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00038 Score=70.77 Aligned_cols=98 Identities=22% Similarity=0.358 Sum_probs=75.5
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
++|-+|||.-.+...+.+. .|+.+|+++..++..++..+ +..+-......+. .+.|++++||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 7999999999888888775 89999998887776665555 3334455555555 8999999999999877665544
Q ss_pred cCh---------HHHHHHHHHhccCCeEEEEEc
Q 036725 284 AND---------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~---------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+. ...+.|+.|+|++||.++...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 332 356899999999999987754
No 200
>PRK04148 hypothetical protein; Provisional
Probab=97.52 E-value=0.00069 Score=58.00 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=62.9
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCch-HHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVAS-WGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~-~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~ 266 (392)
..+.+.+.++...+ .++||||||+|. ++..|.+. .|+++|+++ ..++.+++.++.. +.++. .-.+.
T Consensus 4 i~~~l~~~~~~~~~--~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~~~---v~dDlf~p~~~ 73 (134)
T PRK04148 4 IAEFIAENYEKGKN--KKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGLNA---FVDDLFNPNLE 73 (134)
T ss_pred HHHHHHHhcccccC--CEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCCeE---EECcCCCCCHH
Confidence 34455666654333 489999999996 88888876 788887655 3567777777533 44444 22221
Q ss_pred -CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 267 -SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 267 -d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
-..+|+|.+.+. +.+....+.++.+-+ |.-+++.
T Consensus 74 ~y~~a~liysirp----p~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 74 IYKNAKLIYSIRP----PRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred HHhcCCEEEEeCC----CHHHHHHHHHHHHHc--CCCEEEE
Confidence 366999998752 235556666666655 3445553
No 201
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.49 E-value=0.00058 Score=65.76 Aligned_cols=111 Identities=19% Similarity=0.128 Sum_probs=63.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHH---cCCC--cEEEEe
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALE---RGVP--AVIGVL 258 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~---rg~~--~~~~~~ 258 (392)
...+.++...++... .++|||+|+|+|...-...+. .++++|.++. +.+.++. .... ......
T Consensus 19 ~~vl~El~~r~p~f~--P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~-----~~~l~~~l~~~~~~~~~~~~~~ 91 (274)
T PF09243_consen 19 YRVLSELRKRLPDFR--PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPE-----MLELAKRLLRAGPNNRNAEWRR 91 (274)
T ss_pred HHHHHHHHHhCcCCC--CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHH-----HHHHHHHHHhcccccccchhhh
Confidence 445566666665333 348999999999755544432 6677766554 4444332 1111 110011
Q ss_pred ccc--cCCCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 259 GTI--KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 259 ~~~--~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
... ..++. ..|+|+++++|....... ..+++.+.+.+.+ +++++.|..
T Consensus 92 ~~~~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 92 VLYRDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred hhhcccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 111 23332 239999999997776422 4666777666655 888887766
No 202
>PRK00536 speE spermidine synthase; Provisional
Probab=97.47 E-value=0.001 Score=63.46 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=67.3
Q ss_pred HHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc--------CCCcEEEEecc
Q 036725 192 IEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--------GVPAVIGVLGT 260 (392)
Q Consensus 192 i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--------g~~~~~~~~~~ 260 (392)
..+++.+.+. ..+..++||=||.|.|..++.+++. +|+.+|+++. .++.+++. .-|.+..+...
T Consensus 58 YHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~-----Vv~~~k~~lP~~~~~~~DpRv~l~~~~ 132 (262)
T PRK00536 58 ESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEK-----ILDSFISFFPHFHEVKNNKNFTHAKQL 132 (262)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHH-----HHHHHHHHCHHHHHhhcCCCEEEeehh
Confidence 3444444332 2345579999999999999999998 6888877653 44444441 12333333211
Q ss_pred ccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 261 IKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 261 ~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+ -..++||+|+.... ....+.+.+.|.|+|||.++.-.
T Consensus 133 ~~--~~~~~fDVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 133 LD--LDIKKYDLIICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred hh--ccCCcCCEEEEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 11 12478999997632 33567799999999999999954
No 203
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.46 E-value=0.00068 Score=67.89 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-C
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-L 263 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-l 263 (392)
++.+++.+.+.+... + .++||++||+|.++..|++. .|+++|.++.++..+. +.+...++.++.+..++. . +
T Consensus 192 ~e~l~~~v~~~~~~~-~--~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 192 NEKMLEWALDATKGS-K--GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHhhcC-C--CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHH
Confidence 455666666655422 1 26999999999999999876 7999999886655433 455556776666666654 2 2
Q ss_pred C-CC--------------CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 264 P-YP--------------SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 264 p-~~--------------d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+ +. ...||+|+..-- ...-...++..+. +|+++++++..+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP---R~G~~~~~l~~l~---~~~~ivyvSC~p~ 323 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPP---RAGLDDETLKLVQ---AYERILYISCNPE 323 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCC---CCCCcHHHHHHHH---ccCCEEEEEeCHH
Confidence 1 10 225899987532 1111234444443 4788888886543
No 204
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.41 E-value=0.00079 Score=67.19 Aligned_cols=114 Identities=12% Similarity=-0.008 Sum_probs=71.5
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K- 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~- 262 (392)
..+.+++.+.+.+.... . +|||++||+|.++..|++. .|+++|+++.++..+. +.+...++.++.++.++. +
T Consensus 182 ~~~~l~~~v~~~~~~~~-~--~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 182 VNIKMLEWACEVTQGSK-G--DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHHHhhcCC-C--cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHH
Confidence 34556666666664222 2 6999999999999999886 7999999886655544 455556776666666654 2
Q ss_pred CC-------C---C-----CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LP-------Y---P-----SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp-------~---~-----d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++ + . ...||+|+..--. ..-...++..+ ++|+++++++..+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR---~G~~~~~l~~l---~~~~~ivYvsC~p~ 314 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR---AGLDPDTCKLV---QAYERILYISCNPE 314 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCCC---CCCcHHHHHHH---HcCCcEEEEEcCHH
Confidence 21 1 0 1237999865321 10113444444 45889999986554
No 205
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00061 Score=64.70 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~-~l 263 (392)
...++.+.+.....+++ +|||||+|.|.++..|+++ .|+++++++. +++..+++ ...+...+.++. ..
T Consensus 16 ~~v~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~-----l~~~L~~~~~~~~n~~vi~~DaLk~ 88 (259)
T COG0030 16 KNVIDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARVTAIEIDRR-----LAEVLKERFAPYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeEEEEEeCHH-----HHHHHHHhcccccceEEEeCchhcC
Confidence 44688888888766644 8999999999999999998 7899988653 33333333 235666677776 77
Q ss_pred CCCCC-ccceEEecc
Q 036725 264 PYPSR-AFDMAHCSR 277 (392)
Q Consensus 264 p~~d~-sFDlV~~~~ 277 (392)
++++. .++.|+++.
T Consensus 89 d~~~l~~~~~vVaNl 103 (259)
T COG0030 89 DFPSLAQPYKVVANL 103 (259)
T ss_pred cchhhcCCCEEEEcC
Confidence 77654 688998873
No 206
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.36 E-value=0.00046 Score=62.50 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=75.7
Q ss_pred CCeEEecCCCCCCCccHHHHHHHHHhhCCCC--CCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHH
Q 036725 172 GNVFRFPGGGTQFPHGADAYIEELASVIPMD--SGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFA 246 (392)
Q Consensus 172 ~~~~~fp~~g~~f~~~~~~~i~~l~~~l~~~--~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a 246 (392)
|..+..|.+.. ..+..+...+.+.+.+... .+. ++||+-||+|.++...+.+ .++.+|.+..... ...+.+
T Consensus 10 gr~l~~p~~~~-~RPT~drvrealFniL~~~~~~g~--~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~-~i~~N~ 85 (183)
T PF03602_consen 10 GRKLKTPKGDN-TRPTTDRVREALFNILQPRNLEGA--RVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIK-IIKKNL 85 (183)
T ss_dssp T-EEE-TT--T-S-SSSHHHHHHHHHHHHCH-HTT---EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHH-HHHHHH
T ss_pred CCEecCCCCCC-cCCCcHHHHHHHHHHhcccccCCC--eEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHH-HHHHHH
Confidence 44555555432 2344466667777776643 343 8999999999999988887 6888888664332 233344
Q ss_pred HHcCCCc-EEEEecc-c-cCC---CCCCccceEEecccccccccCh--HHHHHHHH--HhccCCeEEEEEcC
Q 036725 247 LERGVPA-VIGVLGT-I-KLP---YPSRAFDMAHCSRCLIPWSAND--GMYMMEID--RVLRPGGYWVLSGP 308 (392)
Q Consensus 247 ~~rg~~~-~~~~~~~-~-~lp---~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~--RvLkPGG~lvl~~p 308 (392)
..-+... ...+..+ . .++ .....||+|+..- ++.... ..++..+. .+|+++|++++...
T Consensus 86 ~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 86 EKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 4445433 3334333 2 222 2478999999874 444332 56777776 78999999999753
No 207
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.36 E-value=0.00089 Score=61.96 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=72.9
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc--c
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI--K 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~--~ 262 (392)
+++-+++.+. + ++.||||.=+|+-+..++.. .|+++|+.+...... .++.+..|+. .+.++.+.. .
T Consensus 64 fl~~li~~~~---a--k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 64 FLQMLIRLLN---A--KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred HHHHHHHHhC---C--ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhh
Confidence 4444444443 3 38999999999777766654 899999977544443 4555666653 344444432 1
Q ss_pred C-----CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 263 L-----PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 l-----p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
| ..+.++||+|+.. +|..+...++.++.++||+||++++.
T Consensus 138 Ld~l~~~~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HHHHHhcCCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEe
Confidence 2 1357899999864 67656678999999999999999995
No 208
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.35 E-value=0.00084 Score=63.63 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=64.5
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC---CCcEEEEeccc--cCCCCCC-ccceEE
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG---VPAVIGVLGTI--KLPYPSR-AFDMAH 274 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg---~~~~~~~~~~~--~lp~~d~-sFDlV~ 274 (392)
..++||=||.|.|..+..+.+. .++.+|+++..+..+..-+..... -+.+..+.++. -+--..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 3459999999999999999886 588887766433332222222111 24555566654 2222234 899999
Q ss_pred ecccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....- +.... ...+++.+.+.|+|||++++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 75332 22211 2589999999999999999965
No 209
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0018 Score=59.38 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=71.0
Q ss_pred CccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec
Q 036725 185 PHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG 259 (392)
Q Consensus 185 ~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~ 259 (392)
..++...+.+|.+......+ ...|+|+|+-.|+|+..++++ .|+++|+.|.++.. .+.++.+
T Consensus 26 RSRAa~KL~el~~k~~i~~~-~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~------------~V~~iq~ 92 (205)
T COG0293 26 RSRAAYKLLELNEKFKLFKP-GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP------------GVIFLQG 92 (205)
T ss_pred cchHHHHHHHHHHhcCeecC-CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC------------CceEEee
Confidence 34555566667666654333 238999999999999998886 48999998765432 3444444
Q ss_pred cccCC---------CCCCccceEEecccc---cccccCh-------HHHHHHHHHhccCCeEEEEEc
Q 036725 260 TIKLP---------YPSRAFDMAHCSRCL---IPWSAND-------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 260 ~~~lp---------~~d~sFDlV~~~~~l---~~~~~d~-------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+...+ +....+|+|+|...- -++..|. ..++.-..++|+|||.|++-.
T Consensus 93 d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 93 DITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred eccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 44221 334557999976332 1121121 245666777999999999953
No 210
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.29 E-value=0.0016 Score=65.38 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=66.6
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-CCCCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-LPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-lp~~d~sFDlV~~~~~l~ 280 (392)
+|||+.||+|..+..++.+ .|+++|+++..+. ...+.++..++..+.....+. . +....+.||+|...
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~-~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD---- 121 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE-SIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID---- 121 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC----
Confidence 7999999999999999875 4899988875433 333444555555444555554 2 22224679999865
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEE
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++. .+..++..+.+.+++||++.++
T Consensus 122 PfG-s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 PFG-TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCC-CcHHHHHHHHHhcccCCEEEEE
Confidence 433 5568999999999999999997
No 211
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.27 E-value=0.00061 Score=66.52 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=69.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh-----------CCcEEEeCCccChHHHHHHHHHHcCC--Cc-E
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK-----------KNVITMSFAPRDSHEAQVQFALERGV--PA-V 254 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~-----------~~v~~vd~s~~d~~~a~~~~a~~rg~--~~-~ 254 (392)
....+.+.+++....+ .+|||-.||+|.|...+.+ ..+.|+|+++....-+...... ++. .. .
T Consensus 32 ~~i~~l~~~~~~~~~~--~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~ 108 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKG--DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHHHTT-TT--EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCE
T ss_pred HHHHHHHHhhhhcccc--ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccccc
Confidence 4566777777754444 3899999999999877765 2688888866544444443332 232 21 2
Q ss_pred EEEeccccCCC-C-CCccceEEeccccccc--c------------------cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 255 IGVLGTIKLPY-P-SRAFDMAHCSRCLIPW--S------------------ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 255 ~~~~~~~~lp~-~-d~sFDlV~~~~~l~~~--~------------------~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
....+....+. . ...||+|+++.-+... . .....++..+.+.|++||++.+..|..
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 33333333332 2 5789999987322111 0 001257888999999999998887643
No 212
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.24 E-value=0.00096 Score=63.16 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=56.4
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC---cEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP---AVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~---~~~~~~~~~-~l 263 (392)
..++.|.+..+...++ .||++|.|||.++..|+++ +|+++++++.++.+-..+. +|.| ......++. ..
T Consensus 45 ~v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccC
Confidence 4677888777776766 8999999999999999997 8999999887665543322 3444 233444444 33
Q ss_pred CCCCCccceEEec
Q 036725 264 PYPSRAFDMAHCS 276 (392)
Q Consensus 264 p~~d~sFDlV~~~ 276 (392)
++ -.||.++++
T Consensus 120 d~--P~fd~cVsN 130 (315)
T KOG0820|consen 120 DL--PRFDGCVSN 130 (315)
T ss_pred CC--cccceeecc
Confidence 32 248999885
No 213
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.013 Score=54.77 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=89.4
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-cc-CC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IK-LP 264 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~~-lp 264 (392)
..+...++.+..... .+.+||||+.||.|+..++++ .|+++|+.-. |...-.+.. +.+...... .+ +.
T Consensus 65 ~KL~~ale~F~l~~k-~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~-----Ql~~kLR~d-~rV~~~E~tN~r~l~ 137 (245)
T COG1189 65 LKLEKALEEFELDVK-GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG-----QLHWKLRND-PRVIVLERTNVRYLT 137 (245)
T ss_pred HHHHHHHHhcCcCCC-CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC-----ccCHhHhcC-CcEEEEecCChhhCC
Confidence 345555566654333 358999999999999999998 7899987543 332222333 333333322 22 21
Q ss_pred ---CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhhh----hhhcccChHhHHHHHHHHHHHH
Q 036725 265 ---YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTN----YQAWQRPIKELEEEQRKIEEIA 337 (392)
Q Consensus 265 ---~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~----~~~w~~~~e~l~~~~~~i~~l~ 337 (392)
+ .+..|+|+|.-.++ ....+|..+..+|+|+|-+++-.-|.-.... ..+..+..+........+++.+
T Consensus 138 ~~~~-~~~~d~~v~DvSFI----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~ 212 (245)
T COG1189 138 PEDF-TEKPDLIVIDVSFI----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFA 212 (245)
T ss_pred HHHc-ccCCCeEEEEeehh----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHH
Confidence 2 23678999876553 5568999999999999999886644421111 1222333444444556677777
Q ss_pred HHcCceecc
Q 036725 338 KLLCWEKKH 346 (392)
Q Consensus 338 ~~l~W~~~~ 346 (392)
....|....
T Consensus 213 ~~~g~~~~g 221 (245)
T COG1189 213 KELGFQVKG 221 (245)
T ss_pred hhcCcEEee
Confidence 777886443
No 214
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0024 Score=65.30 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=81.7
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
.++.+++...+.+....+. ++||+=||.|.|+..|+++ .|+|+++++..+..+ .+.|+.+++.++.++.++. +.
T Consensus 277 ~~ekl~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A-~~NA~~n~i~N~~f~~~~ae~~ 353 (432)
T COG2265 277 VAEKLYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAA-QENAAANGIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHHHhhcCCC--EEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHH-HHHHHHcCCCcEEEEeCCHHHH
Confidence 4455667777777754444 8999999999999999977 899999998666554 4577778888788887776 33
Q ss_pred CC---CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 264 PY---PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 264 p~---~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.- ....+|.|+..--. .--...+++.+.+ ++|-.++++|-++.
T Consensus 354 ~~~~~~~~~~d~VvvDPPR---~G~~~~~lk~l~~-~~p~~IvYVSCNP~ 399 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPR---AGADREVLKQLAK-LKPKRIVYVSCNPA 399 (432)
T ss_pred hhhccccCCCCEEEECCCC---CCCCHHHHHHHHh-cCCCcEEEEeCCHH
Confidence 22 24588999864211 1011355555554 57888999987666
No 215
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0073 Score=54.58 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=79.1
Q ss_pred CCeEEecCCCCCCCccHHHHHHHHHhhCCC--CCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHH
Q 036725 172 GNVFRFPGGGTQFPHGADAYIEELASVIPM--DSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFA 246 (392)
Q Consensus 172 ~~~~~fp~~g~~f~~~~~~~i~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a 246 (392)
|..+.+|.+.. ..+..+...+.+.+++.. ..+. ++||+=+|+|.++..-+.+ .++.+|.+...... ..+..
T Consensus 11 gr~L~~p~~~~-~RPT~drVREalFNil~~~~i~g~--~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~-l~~N~ 86 (187)
T COG0742 11 GRKLKTPDGPG-TRPTTDRVREALFNILAPDEIEGA--RVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKI-LKENL 86 (187)
T ss_pred CCcccCCCCCC-cCCCchHHHHHHHHhccccccCCC--EEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHH-HHHHH
Confidence 34455555422 345567788888888875 3444 8999999999999999988 67888775532222 22233
Q ss_pred HHcC--CCcEEEEeccc-cCCCCCC--ccceEEecccccccccCh---HHHHH--HHHHhccCCeEEEEEcC
Q 036725 247 LERG--VPAVIGVLGTI-KLPYPSR--AFDMAHCSRCLIPWSAND---GMYMM--EIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 247 ~~rg--~~~~~~~~~~~-~lp~~d~--sFDlV~~~~~l~~~~~d~---~~~L~--ei~RvLkPGG~lvl~~p 308 (392)
+..+ .....+..+.. -|+-... .||+|+..-- +..+. ...+. +-..+|+|+|.+++...
T Consensus 87 ~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP---y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 87 KALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP---YAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC---CccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 3333 23344444443 3333333 4999998643 32222 22222 24577999999999754
No 216
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.11 E-value=0.0095 Score=55.17 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=62.5
Q ss_pred ceEEEECCcCchHHHHHh----hCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCc-cceEEeccccc
Q 036725 207 RTALDTGCGVASWGAYLF----KKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRA-FDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~----~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~s-FDlV~~~~~l~ 280 (392)
.+++|||+|.|.=+..|+ +.+++-+|-..+-+.- ..+.+.+.+++++.++.+.. .+.- +.. ||+|++..+.
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~F-L~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vtsRAva- 145 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAF-LREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTSRAVA- 145 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHH-HHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEeehcc-
Confidence 499999999996665554 2377777765543222 22344567888887777765 3332 223 9999987543
Q ss_pred ccccChHHHHHHHHHhccCCeEEEE
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl 305 (392)
....++.-+...||+||.+++
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchh
Confidence 556677778899999999875
No 217
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.10 E-value=0.0041 Score=61.20 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=58.7
Q ss_pred cceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
..++|||||++|.|+..|.++ .|++||..+.+.+ -+..+.+.....+. +..-+.+.+|+|+|..+
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~--------L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---- 279 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQS--------LMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---- 279 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHh--------hhCCCCEEEEeccCcccCCCCCCCCEEEEecc----
Confidence 348999999999999999998 6888886543211 12224444444443 33222678999999743
Q ss_pred ccChHHHHHHHHHhccCC--eEEEEE
Q 036725 283 SANDGMYMMEIDRVLRPG--GYWVLS 306 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPG--G~lvl~ 306 (392)
..+..++.-+.+.|..| ..+|+.
T Consensus 280 -e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 -EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 36677777788888665 456664
No 218
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.00014 Score=63.09 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=46.3
Q ss_pred ccCCCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcCCCchh
Q 036725 261 IKLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLINWR 313 (392)
Q Consensus 261 ~~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~~~~ 313 (392)
...+|.++|.|+|.+.++++|+.-+. ..++++++|+|||||++-+++|...+.
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 37789999999999999999987544 589999999999999999999888553
No 219
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.01 E-value=0.004 Score=60.55 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=55.5
Q ss_pred cceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHH----cCC-CcEEEEeccc-cCCCCCCccceEEec
Q 036725 206 VRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALE----RGV-PAVIGVLGTI-KLPYPSRAFDMAHCS 276 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~----rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~ 276 (392)
.+.|||+|||+|.++...+.. +|.+++.+. |.+.|++ +.+ ..+..+-+-. ++.+| ++.|+|++-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~------MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISE 250 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE------MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISE 250 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhH------HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEec
Confidence 458999999999877666554 788886643 3444433 222 2233333333 44443 568999975
Q ss_pred ccccc-cccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIP-WSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~-~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+-.- +.+..-...-..+|.|+|.|..+=+.
T Consensus 251 PMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 251 PMGYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred cchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 33211 11111222334569999999987654
No 220
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.01 E-value=0.0044 Score=57.37 Aligned_cols=101 Identities=22% Similarity=0.345 Sum_probs=69.5
Q ss_pred CCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC----CCc
Q 036725 199 IPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP----SRA 269 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~----d~s 269 (392)
++..++. +||-+|..+|+....+.+- .|.+|++++. .-...+..|++| ++++-+..+.+.|.. -+.
T Consensus 69 ~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r-~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPR-SMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHH-HHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecch-hHHHHHHHhccC--CceeeeeccCCChHHhhccccc
Confidence 3444554 8999999999888877763 6889999985 444567788887 466666777655521 347
Q ss_pred cceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 270 FDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+|+|++. +. -++..+.++.++..-||+||.++++.
T Consensus 144 VDvI~~D-Va--Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQD-VA--QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE--S--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEec-CC--ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 9999986 22 22233678888999999999999975
No 221
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.014 Score=55.46 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=69.6
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP 264 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp 264 (392)
+..|..++...+|. +||+-|.|+|+++.++++. ++...|+...-...+.. .-++.++ .++.+...+. ...
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~e-eFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALE-EFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHH-HHHHhCCCcceEEEEeecccCC
Confidence 45666777777777 8999999999999999886 67778764322222222 2233444 4454444444 433
Q ss_pred --CCCCccceEEecccccccccChHHHHHHHHHhccCCe-EEEEEcCCC
Q 036725 265 --YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGG-YWVLSGPLI 310 (392)
Q Consensus 265 --~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG-~lvl~~p~~ 310 (392)
..+..+|.|+... . .+..++--++.+||.+| +|+--+|.+
T Consensus 171 F~~ks~~aDaVFLDl-P-----aPw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 171 FLIKSLKADAVFLDL-P-----APWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ccccccccceEEEcC-C-----ChhhhhhhhHHHhhhcCceEEeccHHH
Confidence 3478899998652 2 44446677777898877 555544433
No 222
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.88 E-value=0.0076 Score=59.54 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=85.5
Q ss_pred EecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC
Q 036725 176 RFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP 252 (392)
Q Consensus 176 ~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~ 252 (392)
++.-...+|.++...-..++++... .|. +|||+=+|.|.|+..++.. .|+++|++|..+. .+.+.++.+++.
T Consensus 163 ~vD~~Kv~Fsprl~~ER~Rva~~v~--~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~-~L~eNi~LN~v~ 237 (341)
T COG2520 163 KVDVAKVYFSPRLSTERARVAELVK--EGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVE-YLKENIRLNKVE 237 (341)
T ss_pred EEchHHeEECCCchHHHHHHHhhhc--CCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHH-HHHHHHHhcCcc
Confidence 3333445565555555666777665 354 8999999999999999886 4899999885443 344555555655
Q ss_pred c-EEEEeccc-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 253 A-VIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 253 ~-~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. +..+.++. ..+...+.||-|++.. +.....++....+.+++||.+.+-.
T Consensus 238 ~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 238 GRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEe
Confidence 4 55667776 4444448899999863 2244678888999999999998853
No 223
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.015 Score=58.04 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=71.9
Q ss_pred hhCCCCCCCcceEEEECCcCchHHHHHhhC--C----cEEEeCCccChHHHHHHHHHHcCCCcEEEEe-ccccCC---CC
Q 036725 197 SVIPMDSGMVRTALDTGCGVASWGAYLFKK--N----VITMSFAPRDSHEAQVQFALERGVPAVIGVL-GTIKLP---YP 266 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~----v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~-~~~~lp---~~ 266 (392)
..+...++. +|||+.++.|.=+..|++. + |+++|+++. -.....+..+..|+.++.... ++..++ ..
T Consensus 150 ~~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~-Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 150 LVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPK-RLKRLRENLKRLGVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHH-HHHHHHHHHHHcCCCceEEEecccccccccccc
Confidence 344444554 9999999999888777775 2 589988763 333355566667887644444 333333 22
Q ss_pred CCccceEEec------cccc-----ccccC----------hHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 267 SRAFDMAHCS------RCLI-----PWSAN----------DGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 267 d~sFDlV~~~------~~l~-----~~~~d----------~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
.+.||.|+.. .++. -|... ...+|....++|||||.++.++....
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 3369999943 1110 11111 13789999999999999999986663
No 224
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.85 E-value=0.0032 Score=63.43 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=69.3
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC--cEEEEeccc--cCCC---CCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI--KLPY---PSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~~~~~~--~lp~---~d~sFDlV~~~ 276 (392)
++|||+=|=||.|+.+.+.. .+++||+|...+.-+.. .+.-+|++ .+.++.++. -+.. ...+||+|+..
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~-N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARE-NAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHH-HHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 48999999999999988875 78999888765555444 33334442 234455543 2222 24589999975
Q ss_pred ccc--------cccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 277 RCL--------IPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 277 ~~l--------~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
--- .....+...++..+.++|+|||.+++++...
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 211 0111233578999999999999999987554
No 225
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0055 Score=56.26 Aligned_cols=109 Identities=18% Similarity=0.264 Sum_probs=73.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhCC---cEEEeCCccChHHHHHHHHHHcC---CCcEEEEeccc-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKN---VITMSFAPRDSHEAQVQFALERG---VPAVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vd~s~~d~~~a~~~~a~~rg---~~~~~~~~~~~- 261 (392)
..+++.+++.+.. +|. +||.||-|-|.....+.++. -+.++..+ ...+.-++.| ..+++...+..
T Consensus 88 tpiMha~A~ai~t-kgg--rvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-----~V~krmr~~gw~ek~nViil~g~We 159 (271)
T KOG1709|consen 88 TPIMHALAEAIST-KGG--RVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-----DVLKRMRDWGWREKENVIILEGRWE 159 (271)
T ss_pred hHHHHHHHHHHhh-CCc--eEEEeccchHHHHHHHhhcCCcceEEEecCH-----HHHHHHHhcccccccceEEEecchH
Confidence 4466777776653 333 89999999999998888872 23444333 3333333333 35666666654
Q ss_pred -cC-CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 262 -KL-PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 -~l-p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
-+ .++|+.||-|.-. ...+.-+|...+.+.+.|+|||+|+|-+.
T Consensus 160 Dvl~~L~d~~FDGI~yD-Ty~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 160 DVLNTLPDKHFDGIYYD-TYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhccccccCcceeEee-chhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 22 3679999999865 33233347778889999999999999774
No 226
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.82 E-value=0.012 Score=57.94 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=66.1
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCCCcEE--EEecc
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGVPAVI--GVLGT 260 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~--~~~~~ 260 (392)
....|++.++ .+. .++|+|||.|.=+..|++. .++++|+|...+..+..+... ...|.+. .+.++
T Consensus 66 ~~~~Ia~~i~--~~~--~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~-~~~p~l~v~~l~gd 140 (319)
T TIGR03439 66 HSSDIAASIP--SGS--MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL-GNFSHVRCAGLLGT 140 (319)
T ss_pred HHHHHHHhcC--CCC--EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh-ccCCCeEEEEEEec
Confidence 3455666554 232 7999999999876665543 477787766555444443331 2234332 24454
Q ss_pred c--c---CCC--CCCccceEEecc-cccccccCh-HHHHHHHHH-hccCCeEEEEEc
Q 036725 261 I--K---LPY--PSRAFDMAHCSR-CLIPWSAND-GMYMMEIDR-VLRPGGYWVLSG 307 (392)
Q Consensus 261 ~--~---lp~--~d~sFDlV~~~~-~l~~~~~d~-~~~L~ei~R-vLkPGG~lvl~~ 307 (392)
. . ++- ......+|+... ++-.+.++. ..+|+++.+ .|+|||.|++..
T Consensus 141 y~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 141 YDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 3 1 221 123456666543 333343222 589999999 999999999964
No 227
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.78 E-value=0.0071 Score=63.54 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=17.1
Q ss_pred ceEEEECCcCchHHHHHhhC
Q 036725 207 RTALDTGCGVASWGAYLFKK 226 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~ 226 (392)
.+|||.|||+|.+...++++
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~ 52 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKK 52 (524)
T ss_pred eEEEeCCCCccHHHHHHHHH
Confidence 48999999999999877653
No 228
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.58 E-value=0.0061 Score=55.12 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=59.5
Q ss_pred hCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccCh-------HHHHHHHHHHcCCCcEEEEeccc-cCC--
Q 036725 198 VIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDS-------HEAQVQFALERGVPAVIGVLGTI-KLP-- 264 (392)
Q Consensus 198 ~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~-------~~a~~~~a~~rg~~~~~~~~~~~-~lp-- 264 (392)
....+.+. +|+|+=.|.|+|+..+... .=.+..+.+.+. ...+...+++....++..+.... .++
T Consensus 43 FaGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p 120 (238)
T COG4798 43 FAGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP 120 (238)
T ss_pred EeccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC
Confidence 34445555 8999999999999999875 112223333332 11222222333323322222222 233
Q ss_pred -----CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 265 -----YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 265 -----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+..++|+++....+ | ....+++..++++.|||||.+++..+
T Consensus 121 q~~d~~~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred Ccccccccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 123344444433322 3 22457899999999999999999753
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.57 E-value=0.014 Score=53.77 Aligned_cols=118 Identities=12% Similarity=0.176 Sum_probs=61.0
Q ss_pred CCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHH---HHH----HcCC-
Q 036725 184 FPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQ---FAL----ERGV- 251 (392)
Q Consensus 184 f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~---~a~----~rg~- 251 (392)
|.+-....+..+++.+...+++ ..+|||||.|......+-. ..+|+++.+. .+..+.. ..+ ..|.
T Consensus 23 YGEi~~~~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~-~~~~a~~~~~~~~~~~~~~g~~ 99 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE-LHDLAEELLEELKKRMKHYGKR 99 (205)
T ss_dssp GGGCHHHHHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH-HHHHHHHHHHHHHHHHHHCTB-
T ss_pred eeecCHHHHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEechH-HHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455667777777765554 8999999999765544432 4889998753 3322221 111 1232
Q ss_pred -CcEEEEeccc-cCCCCC---CccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 252 -PAVIGVLGTI-KLPYPS---RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 252 -~~~~~~~~~~-~lp~~d---~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+.+..++. ..++.. ...|+|+++... +.++....|.++..-||+|-++|-.
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 2333334433 111110 236999998654 4445566778888889998887653
No 230
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.54 E-value=0.0064 Score=60.71 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=47.8
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT 260 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~ 260 (392)
..+.+++.+.+.+...++ .|||+=||.|.++..|++. .|+|++..+..+.. +.+.|+.+++.++.+...+
T Consensus 181 ~~~~l~~~~~~~l~~~~~---~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~-A~~Na~~N~i~n~~f~~~~ 252 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG---DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVED-ARENAKLNGIDNVEFIRGD 252 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT---EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHH-HHHHHHHTT--SEEEEE--
T ss_pred HHHHHHHHHHHHhhcCCC---cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHH-HHHHHHHcCCCcceEEEee
Confidence 455677888888875433 6999999999999999987 89999887754444 3446667788877776543
No 231
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.036 Score=50.55 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=72.9
Q ss_pred CCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC----CCcc
Q 036725 199 IPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP----SRAF 270 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~----d~sF 270 (392)
++...++ +||=+|..+|+....+.+- .+.++++++....+ .+..|.+| ++++-++.+.+.|.. -+..
T Consensus 72 ~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re-Ll~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 72 FPIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE-LLDVAEKR--PNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred CCcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH-HHHHHHhC--CCceeeecccCCcHHhhhhcccc
Confidence 3444554 8999999999888877764 58999999976655 66677776 456667777776632 3568
Q ss_pred ceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 271 DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 271 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|+|+.. +. -+...+.+..++..-||+||+++++.
T Consensus 147 Dviy~D-VA--Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 147 DVIYQD-VA--QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cEEEEe-cC--CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 999875 22 22123567788999999999888864
No 232
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.48 E-value=0.015 Score=56.21 Aligned_cols=79 Identities=22% Similarity=0.368 Sum_probs=53.1
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCceecce
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHE 347 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~~~ 347 (392)
++||+|+..+ ++.-..+.-.++..|..+|||||+|+=.+|-....+...+.. ..-.++-..+.+..+++.+.|+...+
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~-~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVE-NEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCc-ccccccccHHHHHHHHHhcCcEEEEe
Confidence 4699999764 334444667899999999999999999988774433322211 11122223355777888999988777
Q ss_pred e
Q 036725 348 K 348 (392)
Q Consensus 348 ~ 348 (392)
+
T Consensus 336 ~ 336 (369)
T KOG2798|consen 336 R 336 (369)
T ss_pred e
Confidence 6
No 233
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0051 Score=53.11 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=51.9
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHh--h-CCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLF--K-KNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSR 268 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~--~-~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~ 268 (392)
+..+-+-.....| +.++|+|||.|.+..... + ..+.|+|+.+..+ +-..+.+.+..+..-..+.+-..+-+..+
T Consensus 37 ~~~Ih~TygdiEg--kkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvqidlLqcdildle~~~g 113 (185)
T KOG3420|consen 37 LYTIHNTYGDIEG--KKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHHHhhhccccC--cchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhhhheeeeeccchhccCC
Confidence 3333344443344 489999999997763333 2 3799999987433 33445566655555444444445556678
Q ss_pred ccceEEeccc
Q 036725 269 AFDMAHCSRC 278 (392)
Q Consensus 269 sFDlV~~~~~ 278 (392)
.||.++.+.-
T Consensus 114 ~fDtaviNpp 123 (185)
T KOG3420|consen 114 IFDTAVINPP 123 (185)
T ss_pred eEeeEEecCC
Confidence 9999998753
No 234
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.36 E-value=0.015 Score=56.27 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=63.1
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC--CcEEEEeccc-c-CC--CCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV--PAVIGVLGTI-K-LP--YPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~--~~~~~~~~~~-~-lp--~~d~sFDlV~~~~ 277 (392)
++|||+=|=||.|+.+.+.. .++.||.|...+..+..+.+ -+++ ..+.++..+. . +. -..++||+|++.-
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~-lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAA-LNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHH-HTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 39999999999999987765 68899887765555444333 3343 3455555554 2 21 1246899999752
Q ss_pred ccc-----ccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 278 CLI-----PWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 278 ~l~-----~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
-.. ....+...++..+.++|+|||++++.+...
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 111 111233578889999999999999876443
No 235
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.29 E-value=0.033 Score=60.63 Aligned_cols=119 Identities=14% Similarity=0.055 Sum_probs=68.6
Q ss_pred HHHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhh------------------------------------------
Q 036725 189 DAYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFK------------------------------------------ 225 (392)
Q Consensus 189 ~~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~------------------------------------------ 225 (392)
+.+...++.+... ..+ ..++|.+||+|++....+.
T Consensus 175 etlAaa~l~~a~w~~~~--~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 175 ENLAAAILLRSGWPQEG--TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred HHHHHHHHHHcCCCCCC--CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 4455555555443 223 3899999999998865532
Q ss_pred ----CCcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccc-cCCCC--CCccceEEecccccc-cc--cChHHHHHHHH
Q 036725 226 ----KNVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTI-KLPYP--SRAFDMAHCSRCLIP-WS--ANDGMYMMEID 294 (392)
Q Consensus 226 ----~~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~-~lp~~--d~sFDlV~~~~~l~~-~~--~d~~~~L~ei~ 294 (392)
..++|+|+++..+..+.. .+...|+.. +.+..++. +++.+ .++||+|+++.-... +. .+...+..++-
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~-N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARK-NARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred cccCceEEEEECCHHHHHHHHH-HHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 037888887765554433 444556643 45555555 55543 468999999842211 11 11233444444
Q ss_pred Hhc---cCCeEEEEEcCCC
Q 036725 295 RVL---RPGGYWVLSGPLI 310 (392)
Q Consensus 295 RvL---kPGG~lvl~~p~~ 310 (392)
+.| .+|+.+++.++..
T Consensus 332 ~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 332 RRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHhCCCCeEEEEeCCH
Confidence 444 4898887765433
No 236
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.25 E-value=0.0067 Score=58.97 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=52.2
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP 264 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp 264 (392)
+++.+++.+...++. .+||.+||.|.++..+++. .|+++|.++.++..+...... ...+.++.++. .+.
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLK 81 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHH
Confidence 345566666544444 8999999999999999876 588888876544443322211 24566666665 321
Q ss_pred --CCC--CccceEEecc
Q 036725 265 --YPS--RAFDMAHCSR 277 (392)
Q Consensus 265 --~~d--~sFDlV~~~~ 277 (392)
.++ .+||.|+...
T Consensus 82 ~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 82 EVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHcCCCccCEEEECC
Confidence 112 2799998763
No 237
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.01 Score=58.13 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=60.5
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc---cc
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IK 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~---~~ 262 (392)
.++.+....+... .++|||+|.|.|.-..++-.- .++.++.++ .+.+-.-..+..-.....-...++ .+
T Consensus 101 sL~~L~~~~~dfa--pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dR 177 (484)
T COG5459 101 SLDELQKRVPDFA--PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDR 177 (484)
T ss_pred HHHHHHHhCCCcC--cchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhc
Confidence 4455555554333 347999999998755544432 333343333 111111112221111111111111 14
Q ss_pred CCCC-CCccceEEecccccccccCh--HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LPYP-SRAFDMAHCSRCLIPWSAND--GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp~~-d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++++ ...|++|+...-+.+..... ...++.+..+++|||.|++..++.
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 4444 45677777655444432111 347888999999999999987655
No 238
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.14 E-value=0.047 Score=47.03 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=54.6
Q ss_pred cceEEEECCcCchHHHHHhh-----C---CcEEEeCCccChHHHHHHHHHHcC--C-CcEEEEeccccCCCCCCccceEE
Q 036725 206 VRTALDTGCGVASWGAYLFK-----K---NVITMSFAPRDSHEAQVQFALERG--V-PAVIGVLGTIKLPYPSRAFDMAH 274 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~-----~---~v~~vd~s~~d~~~a~~~~a~~rg--~-~~~~~~~~~~~lp~~d~sFDlV~ 274 (392)
..+|+|+|||-|+++..|+. . .|+++|..+.... ...+.+++.+ . ....+.......-......++++
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 104 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVE-SAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDILV 104 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHH-HHHHHHHHhcchhhccchhhccchhhhcccCCCeEEE
Confidence 45899999999999999988 4 7899988765433 3333444433 1 12222222221111245566776
Q ss_pred ecccccccccCh-HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 275 CSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 275 ~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.. |--.+. ..+|+-+.+ ++-.+++..|--
T Consensus 105 gL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 105 GL----HACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred Ee----ecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 43 444344 445555544 666666555443
No 239
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.08 E-value=0.012 Score=56.09 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=64.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~-~l 263 (392)
...++.+++.+....+. .|||||.|.|.++..|++. ++++++.++. ..+...++ ..+++..+.++. .+
T Consensus 16 ~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~-----~~~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRGKRVIAVEIDPD-----LAKHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSSEEEEEESSHH-----HHHHHHHHCTTCSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhcccCcceeecCcHh-----HHHHHHHHhhhcccceeeecchhcc
Confidence 56788888888755444 8999999999999999886 7999988552 34444443 235666666665 65
Q ss_pred CCCC---CccceEEecccccccccChHHHHHHHHHhccC
Q 036725 264 PYPS---RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRP 299 (392)
Q Consensus 264 p~~d---~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkP 299 (392)
..++ +.-..|+++. ++. -...++..+...-+.
T Consensus 89 ~~~~~~~~~~~~vv~Nl---Py~-is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNL---PYN-ISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEE---TGT-GHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEe---ccc-chHHHHHHHhhcccc
Confidence 5443 3455666652 442 334566666664344
No 240
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.0032 Score=55.25 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=60.2
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcC----CCcEE---EEeccccCCCCCCccceEE
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERG----VPAVI---GVLGTIKLPYPSRAFDMAH 274 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg----~~~~~---~~~~~~~lp~~d~sFDlV~ 274 (392)
+.||++|.|.-.++..|... .|...| +.+.+...++....+. +.... ......+......+||+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltd--gne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTD--GNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEec--CCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 58999999966655555443 344443 3333333333332222 11110 0000112223356899999
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 275 CSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 275 ~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
|+.|+ .+.+....+++-|.+.|||.|..++..|-.
T Consensus 109 aADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 109 AADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred eccch-hHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 99998 355455789999999999999999887654
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.88 E-value=0.036 Score=54.79 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=78.5
Q ss_pred EecCCCCCCCccHHH-HHHHHHhhCCCC-CCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHH--
Q 036725 176 RFPGGGTQFPHGADA-YIEELASVIPMD-SGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFAL-- 247 (392)
Q Consensus 176 ~fp~~g~~f~~~~~~-~i~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~-- 247 (392)
-+-+||-||...-+. |.+.+. ..+.. -...++||=+|.|.|-.+..|.+. +|+-+|++|.+++-+....+.
T Consensus 259 LYldG~LQfsTrDe~RYhEsLV-~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~ 337 (508)
T COG4262 259 LYLDGGLQFSTRDEYRYHESLV-YPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRA 337 (508)
T ss_pred EEEcCceeeeechhhhhhheee-ecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhh
Confidence 455577777655444 333332 22221 123468999999999999999986 788999988766544322221
Q ss_pred -HcC---CCcEEEEeccc-c-CCCCCCccceEEecccccccccCh-----HHHHHHHHHhccCCeEEEEEc
Q 036725 248 -ERG---VPAVIGVLGTI-K-LPYPSRAFDMAHCSRCLIPWSAND-----GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 248 -~rg---~~~~~~~~~~~-~-lp~~d~sFDlV~~~~~l~~~~~d~-----~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.+ -|.+..+.++. . +--..+.||.|+... ..+-.+.. ..+..-+.|.|+++|.+++-.
T Consensus 338 ~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 338 LNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred hccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 112 24555555554 2 222356899999752 11111111 256677888999999999954
No 242
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.77 E-value=0.038 Score=55.63 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=44.8
Q ss_pred ceEEEECCcCchHHHHHhhC-------------------CcEEEeCCccChHHHHHHHHHH-------------cCCCc-
Q 036725 207 RTALDTGCGVASWGAYLFKK-------------------NVITMSFAPRDSHEAQVQFALE-------------RGVPA- 253 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-------------------~v~~vd~s~~d~~~a~~~~a~~-------------rg~~~- 253 (392)
-+|+|+|||+|..+..+... .+.--|+-..|.+.-......- .+...
T Consensus 65 ~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~ 144 (386)
T PLN02668 65 FTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSY 144 (386)
T ss_pred eeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCce
Confidence 47999999999766544221 2344466666666544433210 11111
Q ss_pred -EEEEeccc-cCCCCCCccceEEecccccccc
Q 036725 254 -VIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 254 -~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+..+-++. .--||+++.+++|++.++ ||.
T Consensus 145 f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWL 175 (386)
T PLN02668 145 FAAGVPGSFYRRLFPARSIDVFHSAFSL-HWL 175 (386)
T ss_pred EEEecCccccccccCCCceEEEEeeccc-eec
Confidence 12222343 444899999999999888 664
No 243
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.016 Score=59.47 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=55.4
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT 260 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~ 260 (392)
.++.+...+.+.+....+ ..+||+-||+|.++..++++ .|+|+++++.++..| ...|..+|+.+..++.+.
T Consensus 367 ~aevLys~i~e~~~l~~~--k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA-~~nA~~NgisNa~Fi~gq 439 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPAD--KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDA-EKNAQINGISNATFIVGQ 439 (534)
T ss_pred HHHHHHHHHHHHhCCCCC--cEEEEEeecCCceehhhhccccceeeeecChhhcchh-hhcchhcCccceeeeecc
Confidence 455556666677765555 48999999999999999998 899999998666654 447788898888887773
No 244
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.63 E-value=0.036 Score=53.67 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=66.6
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC-C-CCCCccceEEe----
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL-P-YPSRAFDMAHC---- 275 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l-p-~~d~sFDlV~~---- 275 (392)
.|||+.+|.|.=+..+++. .+++.|++..-+. ...+.+.+.|..++.....+. .. + .....||.|+.
T Consensus 88 ~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~-~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 88 RVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLK-RLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAPC 166 (283)
T ss_dssp EEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHH-HHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECSC
T ss_pred cccccccCCCCceeeeeecccchhHHHHhccCHHHHH-HHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCCc
Confidence 8999999999877777664 6889988764332 234455566877776664443 22 2 22446999994
Q ss_pred ccc--ccc-----c--cc-C-------hHHHHHHHHHhc----cCCeEEEEEcCCC
Q 036725 276 SRC--LIP-----W--SA-N-------DGMYMMEIDRVL----RPGGYWVLSGPLI 310 (392)
Q Consensus 276 ~~~--l~~-----~--~~-d-------~~~~L~ei~RvL----kPGG~lvl~~p~~ 310 (392)
+.. +.. | .+ + ...+|..+.+.| ||||+++.++...
T Consensus 167 Sg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 167 SGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp CCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred cchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 211 110 0 00 0 127899999999 9999999997555
No 245
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.52 E-value=0.015 Score=51.50 Aligned_cols=68 Identities=26% Similarity=0.315 Sum_probs=42.7
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC-C-CCCCc-cceEEec
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL-P-YPSRA-FDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l-p-~~d~s-FDlV~~~ 276 (392)
+|||+.||.|..+..+++. .|+++|+++.-+.- ....|.-.|+ .++.++.++. .+ + +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~-a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLEC-AKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHH-HHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHH-HHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 7999999999999999998 79999987643333 2334555664 4678888876 22 1 22222 8999976
No 246
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.50 E-value=0.083 Score=48.00 Aligned_cols=95 Identities=20% Similarity=0.177 Sum_probs=57.0
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
++|||+|.|+|.-+..-+.. .++..|+.+ ....+..-.++.+|+... +...+ +-..+..||+|+.+.++..-.
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P-~~~~ai~lNa~angv~i~-~~~~d--~~g~~~~~Dl~LagDlfy~~~ 156 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDP-WLEQAIRLNAAANGVSIL-FTHAD--LIGSPPAFDLLLAGDLFYNHT 156 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCCh-HHHHHhhcchhhccceeE-Eeecc--ccCCCcceeEEEeeceecCch
Confidence 59999999999766655554 778888865 233333334444553222 22222 222678899999987652211
Q ss_pred cChHHHHHHHHHhccCCeEEEEEc
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+++. +.+.|+..|.-++++
T Consensus 157 -~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 157 -EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred -HHHHHHH-HHHHHHhCCCEEEEe
Confidence 2345566 666666666666654
No 247
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.27 E-value=0.0079 Score=48.83 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=38.4
Q ss_pred EEECCcCchHHHHHhhC-------CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc--cCC-CCCCccceEEeccc
Q 036725 210 LDTGCGVASWGAYLFKK-------NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI--KLP-YPSRAFDMAHCSRC 278 (392)
Q Consensus 210 LDiGCG~G~~~~~L~~~-------~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~--~lp-~~d~sFDlV~~~~~ 278 (392)
||||+..|..+..+++. .++++|..+. .+...+..++.++ ..+.++.++. .++ +++++||+|+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888777763 4788888653 1122223333333 3455555554 121 3357899999763
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
- |..+.....+..+.+.|+|||++++.
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2 33334567888999999999999884
No 248
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.09 E-value=0.18 Score=50.03 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=41.3
Q ss_pred CCCcceEEEECCcCchHHHHHhhC--------------------CcEEEeCCccChHHHHHHHHHHc----CCCcE--EE
Q 036725 203 SGMVRTALDTGCGVASWGAYLFKK--------------------NVITMSFAPRDSHEAQVQFALER----GVPAV--IG 256 (392)
Q Consensus 203 ~~~~~~VLDiGCG~G~~~~~L~~~--------------------~v~~vd~s~~d~~~a~~~~a~~r----g~~~~--~~ 256 (392)
.+..-+|+|+||..|..+..+... .|.--|+-..|.+.-........ ..+.+ ..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 334458999999999777655432 24455777777765444333221 01222 23
Q ss_pred Eeccc-cCCCCCCccceEEecccccccc
Q 036725 257 VLGTI-KLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 257 ~~~~~-~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+-++. .--||++|.|+++++.++ ||.
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~al-HWL 120 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYAL-HWL 120 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-T-TB-
T ss_pred cCchhhhccCCCCceEEEEEechh-hhc
Confidence 44554 445889999999999887 553
No 249
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.83 E-value=0.28 Score=49.16 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=72.5
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhCC-------------------------------------------
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKN------------------------------------------- 227 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~------------------------------------------- 227 (392)
+...|+.+..-.++ ..++|-=||+|++....+...
T Consensus 179 LAaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 179 LAAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 44444444443333 479999999999887655431
Q ss_pred cEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cCCCCCCccceEEecccccccccC------h----HHHHHHHHH
Q 036725 228 VITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSAN------D----GMYMMEIDR 295 (392)
Q Consensus 228 v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d------~----~~~L~ei~R 295 (392)
++|+|+++..+..|. ..|++.|+. .+.+...+. .++-+-+.+|+|+|+. +|... . ..+.+.+.+
T Consensus 257 ~~G~Did~r~i~~Ak-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP---PYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 257 IYGSDIDPRHIEGAK-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP---PYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred EEEecCCHHHHHHHH-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC---CcchhcCChhhHHHHHHHHHHHHHH
Confidence 669999887666544 366777764 455555555 5553337899999984 33211 1 245566777
Q ss_pred hccCCeEEEEEcC
Q 036725 296 VLRPGGYWVLSGP 308 (392)
Q Consensus 296 vLkPGG~lvl~~p 308 (392)
.++-.+.++++++
T Consensus 333 ~~~~ws~~v~tt~ 345 (381)
T COG0116 333 LLAGWSRYVFTTS 345 (381)
T ss_pred HhcCCceEEEEcc
Confidence 7887888998864
No 250
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.21 E-value=0.5 Score=45.20 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=50.3
Q ss_pred CcceEEEECCcCc--hHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCc--EEEEeccccCC---CC------
Q 036725 205 MVRTALDTGCGVA--SWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIKLP---YP------ 266 (392)
Q Consensus 205 ~~~~VLDiGCG~G--~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~--~~~~~~~~~lp---~~------ 266 (392)
.++..||||||-- .....++++ +|.-+|..|.-+.-+ .+.-.+.+. ..++.++.+-| +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~---ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHA---RALLADNPRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCC---HHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHH---HhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 4678999999943 344455443 788899876433222 122222233 55566554322 00
Q ss_pred ----CCccceEEeccccccccc--ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 267 ----SRAFDMAHCSRCLIPWSA--NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 267 ----d~sFDlV~~~~~l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++.+ .|+...++++..+ ++..++..+...|.||.+|+++.-
T Consensus 145 ~lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 145 LLDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp C--TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred cCCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 2223 3334446655543 457999999999999999999853
No 251
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.09 E-value=0.41 Score=44.11 Aligned_cols=94 Identities=15% Similarity=0.057 Sum_probs=56.8
Q ss_pred EEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCCCCCc-cceEEeccccccc
Q 036725 209 ALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPYPSRA-FDMAHCSRCLIPW 282 (392)
Q Consensus 209 VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~~d~s-FDlV~~~~~l~~~ 282 (392)
|.||||--|++..+|.++ .++++|+++.-+..+.... ...++ ..+....++---+++.+. .|.|+...+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i-~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENI-AKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHH-HHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH-
Confidence 689999999999999998 6889999876555544433 34453 456666666422344443 788887643211
Q ss_pred ccChHHHHHHHHHhccCCeEEEEE
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
-...+|.+....++..-.|++.
T Consensus 79 --lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 79 --LIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp --HHHHHHHHTGGGGTT--EEEEE
T ss_pred --HHHHHHHhhHHHhccCCeEEEe
Confidence 2256777777777776777775
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.04 E-value=0.3 Score=47.03 Aligned_cols=100 Identities=12% Similarity=0.201 Sum_probs=52.1
Q ss_pred cceEEEECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHH-HcCC-CcEEEEeccc-cCCCCCCccceEEec
Q 036725 206 VRTALDTGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFAL-ERGV-PAVIGVLGTI-KLPYPSRAFDMAHCS 276 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~-~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~ 276 (392)
.++|+=||+|.=-++..+... .|+++|+++.....+.. ... ..++ ..+.+..++. ..+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~-lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARR-LVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHH-HHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-HHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 458999999987666655543 37788886643333221 222 1222 3455666555 455444689999976
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.....-.++...+|..+.+.++||..+++-
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 432222235589999999999999999985
No 253
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.97 E-value=0.12 Score=44.03 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=31.1
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcE
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAV 254 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~ 254 (392)
++||+|||.|.++..+++. +++++|.++......+ +.....+.+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~-~~~~~n~~~~v 50 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE-ENVKLNNLPNV 50 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH-HHHHHcCCCcE
Confidence 4899999999999988875 4888888765444333 23333444433
No 254
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.84 E-value=0.47 Score=44.54 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=66.7
Q ss_pred CCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC----CCccce
Q 036725 202 DSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP----SRAFDM 272 (392)
Q Consensus 202 ~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~----d~sFDl 272 (392)
.++. +||=+|+++|+......+- -|++++++.. .....+.+|++|- +++-+..+.+-|.. -.-.|+
T Consensus 155 kpGs--KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~r-sGRdL~nmAkkRt--NiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 155 KPGS--KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHR-SGRDLINMAKKRT--NIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred cCCc--eEEEeeccCCceeehhhcccCCCceEEEEEeccc-chHHHHHHhhccC--CceeeeccCCCchheeeeeeeEEE
Confidence 3454 8999999999888777764 5789999874 4445666777773 44445555555532 236788
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 273 AHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 273 V~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|++.- . -++....+..+...-||+||-|+++.
T Consensus 230 IFaDv-a--qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 230 IFADV-A--QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EeccC-C--CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 88752 2 22122456677888999999999986
No 255
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.64 E-value=0.42 Score=48.22 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=66.3
Q ss_pred CCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC---CCCCccceE
Q 036725 203 SGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP---YPSRAFDMA 273 (392)
Q Consensus 203 ~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp---~~d~sFDlV 273 (392)
+....+|||+.+..|.=+.+++.. -|++.|.+.. --....+.+...|+.+.+....+. .+| |+. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~-r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNEN-RLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchH-HHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 444459999999999655555443 4556655432 223334455667877766655554 444 444 89999
Q ss_pred E----ecc--ccc-----cccc----------ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 274 H----CSR--CLI-----PWSA----------NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 274 ~----~~~--~l~-----~~~~----------d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. |+. +.. -+.. -..++|......+++||+|+.++..+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 8 443 110 1110 11378888999999999999997666
No 256
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=93.60 E-value=0.11 Score=47.06 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=60.7
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc----CCCcEEEEeccc-cCCCCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER----GVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r----g~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~ 280 (392)
++.|+|.|+|.++...+.. +|++++.+|. ....|.++ |..++..+.++. ...| ...|+|+|-..=-
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk-----~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDPK-----RARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCcH-----HHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhH
Confidence 7999999999887766654 8999988664 23344443 556677777776 5566 4579999852111
Q ss_pred ccc-cChHHHHHHHHHhccCCeEEEE
Q 036725 281 PWS-ANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 281 ~~~-~d~~~~L~ei~RvLkPGG~lvl 305 (392)
-.. +....++..+..-||-+|.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 111 1224677777778888888765
No 257
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.52 E-value=0.071 Score=43.94 Aligned_cols=38 Identities=26% Similarity=0.603 Sum_probs=27.5
Q ss_pred ccceEEecccccccc---c-Ch--HHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWS---A-ND--GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~---~-d~--~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.||+|.|..+. -|. - |. ..+++.+.+.|+|||+|++.-
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999997554 232 0 22 479999999999999999973
No 258
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=93.14 E-value=1.1 Score=44.55 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=74.3
Q ss_pred CCCCcceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHc-CCCcEEEEeccc-cC--------
Q 036725 202 DSGMVRTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALER-GVPAVIGVLGTI-KL-------- 263 (392)
Q Consensus 202 ~~~~~~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~r-g~~~~~~~~~~~-~l-------- 263 (392)
.++. +|||+.+..|+=++.|.+. .+++=|+++.- ..++....++ ..++......+. ..
T Consensus 154 ~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R--~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 154 KPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKR--LNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred CCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHH--HHHHHHHHhccCCcceeeecccceeccccccccC
Confidence 3454 8999999999988888774 24444553321 1222222232 222222222221 11
Q ss_pred -CCCCCccceEEec-cc----cc--------c-cccC--------hHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcc
Q 036725 264 -PYPSRAFDMAHCS-RC----LI--------P-WSAN--------DGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQ 320 (392)
Q Consensus 264 -p~~d~sFDlV~~~-~~----l~--------~-~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~ 320 (392)
+.....||-|.|. -| .+ . |... .-.+|..-.|.||+||.++.++...+-
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp-------- 301 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP-------- 301 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc--------
Confidence 2334579999864 11 10 0 1111 126889999999999999999765532
Q ss_pred cChHhHHHHHHHHHHHHHHcCceecceeccEEE
Q 036725 321 RPIKELEEEQRKIEEIAKLLCWEKKHEKGETAI 353 (392)
Q Consensus 321 ~~~e~l~~~~~~i~~l~~~l~W~~~~~~~~~~i 353 (392)
.+...-....++.....+.|......-.-.+
T Consensus 302 --ieNEaVV~~~L~~~~~~~~lv~~~~~lp~l~ 332 (375)
T KOG2198|consen 302 --IENEAVVQEALQKVGGAVELVDVSGDLPGLK 332 (375)
T ss_pred --hhhHHHHHHHHHHhcCcccceeeccccccce
Confidence 2222223345666656666655555433333
No 259
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.06 E-value=0.26 Score=45.16 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.6
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeC
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSF 233 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~ 233 (392)
.+.|||||-|.+...|+.. -++|+++
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehh
Confidence 6899999999999999987 5777766
No 260
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.92 E-value=3 Score=39.28 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=49.6
Q ss_pred cceEEEECCcCc-hHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC---CCccceEEecccc
Q 036725 206 VRTALDTGCGVA-SWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP---SRAFDMAHCSRCL 279 (392)
Q Consensus 206 ~~~VLDiGCG~G-~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~---d~sFDlV~~~~~l 279 (392)
+++||=+|=..- +++..|... +|+++|++..-+ .-..+.|++.|++ +.....+.+.|+| .++||++++.-
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE----
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 348999996655 445555433 899999876533 3345577788888 5556666666666 48999999874
Q ss_pred cccccC-hHHHHHHHHHhccCCe
Q 036725 280 IPWSAN-DGMYMMEIDRVLRPGG 301 (392)
Q Consensus 280 ~~~~~d-~~~~L~ei~RvLkPGG 301 (392)
++..+ ...++......||.-|
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT
T ss_pred -CCCHHHHHHHHHHHHHHhCCCC
Confidence 34322 2578888888998766
No 261
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.86 E-value=0.23 Score=49.12 Aligned_cols=89 Identities=21% Similarity=0.172 Sum_probs=58.8
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+|+=+|+| .|..+..+++. +|+++|. ++...+.|++.|...++.-.+.....--.+.||+|+..-.
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~-----~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITR-----SEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeC-----ChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 67777766 56788888874 7888855 4457778888886544332211111111224999987532
Q ss_pred cChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
...+....+.||+||.+++.+.+
T Consensus 239 ---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hhhHHHHHHHHhcCCEEEEECCC
Confidence 34578888999999999998754
No 262
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.76 E-value=0.68 Score=39.99 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=45.6
Q ss_pred cEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC--CCCCccceEEeccccccccc-----Ch---HHHHHHHHH
Q 036725 228 VITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP--YPSRAFDMAHCSRCLIPWSA-----ND---GMYMMEIDR 295 (392)
Q Consensus 228 v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp--~~d~sFDlV~~~~~l~~~~~-----d~---~~~L~ei~R 295 (392)
|.+.|+-...+.....+.. +.+. ..+.++.+.. .+. .+++.+|+|+-+....+-.+ .+ -..++.+.+
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~-~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLE-EAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEES-HHHHHHHHHHHH-HTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHH-hcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 6778775544433333222 3333 4566677665 433 33458999998866544331 11 378999999
Q ss_pred hccCCeEEEEEcCC
Q 036725 296 VLRPGGYWVLSGPL 309 (392)
Q Consensus 296 vLkPGG~lvl~~p~ 309 (392)
+|+|||++.++..+
T Consensus 81 lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 81 LLKPGGIITIVVYP 94 (140)
T ss_dssp HEEEEEEEEEEE--
T ss_pred hhccCCEEEEEEeC
Confidence 99999999998643
No 263
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.76 E-value=0.38 Score=46.85 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=46.3
Q ss_pred cHHHHHHHHHhhCCCCCCC---cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEe
Q 036725 187 GADAYIEELASVIPMDSGM---VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVL 258 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~---~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~ 258 (392)
+.-.|+..|.+++...... ..++||||+|....=..|..+ +++|.|+++..+..|+....+..++. .+..+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 4455777777766543221 347999999987443333322 89999998766666555444442443 333322
Q ss_pred c-cc-c----CCCCCCccceEEecccc
Q 036725 259 G-TI-K----LPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 259 ~-~~-~----lp~~d~sFDlV~~~~~l 279 (392)
. +. . +--+++.||+.+|+--+
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE----
T ss_pred cCCccccchhhhcccceeeEEecCCcc
Confidence 2 11 1 12234689999998644
No 264
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.27 E-value=0.24 Score=46.14 Aligned_cols=89 Identities=21% Similarity=0.360 Sum_probs=58.1
Q ss_pred cceEEEECCcCchHHHHHhhC-------------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC---------
Q 036725 206 VRTALDTGCGVASWGAYLFKK-------------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL--------- 263 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~-------------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l--------- 263 (392)
.++++|+....|+|+..|.++ .|++||+-+.. .++.+..+.++..-
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma------------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA------------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC------------ccCceEEeecccCCHhHHHHHHH
Confidence 458999999999999888764 28888875521 12334445554411
Q ss_pred CCCCCccceEEecccc-----cccccCh-----HHHHHHHHHhccCCeEEEEE
Q 036725 264 PYPSRAFDMAHCSRCL-----IPWSAND-----GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l-----~~~~~d~-----~~~L~ei~RvLkPGG~lvl~ 306 (392)
-|..+..|+|+|...- |.+.+.. -..|.-..+||||||.|+.-
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 2555689999997432 2222111 24566678999999999873
No 265
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.23 E-value=0.36 Score=43.70 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=50.7
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC---------CCCCCccce
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL---------PYPSRAFDM 272 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l---------p~~d~sFDl 272 (392)
.+|||+||..|+|+.-..++ .|.++|+-.... -.|.. ++...+... -.|+...|+
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p---------~~Ga~--~i~~~dvtdp~~~~ki~e~lp~r~Vdv 139 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP---------PEGAT--IIQGNDVTDPETYRKIFEALPNRPVDV 139 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC---------CCCcc--cccccccCCHHHHHHHHHhCCCCcccE
Confidence 38999999999999887776 578888743211 11211 111111111 246788999
Q ss_pred EEecccccccc----cChH-------HHHHHHHHhccCCeEEEEE
Q 036725 273 AHCSRCLIPWS----ANDG-------MYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 273 V~~~~~l~~~~----~d~~-------~~L~ei~RvLkPGG~lvl~ 306 (392)
|++...- .-. .|.. .+|.-....++|+|.|+.-
T Consensus 140 VlSDMap-naTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 140 VLSDMAP-NATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred EEeccCC-CCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 9986321 110 0111 2333344567899999984
No 266
>PRK13699 putative methylase; Provisional
Probab=92.18 E-value=0.55 Score=43.92 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=29.6
Q ss_pred CCCCCccceEEeccccc----c-----cc-----cChHHHHHHHHHhccCCeEEEEE
Q 036725 264 PYPSRAFDMAHCSRCLI----P-----WS-----ANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~----~-----~~-----~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.++++++|+|++.--.. . +. +-...++.|+.|+|||||.+++.
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 46789999999872110 0 00 01247889999999999999874
No 267
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.18 E-value=0.17 Score=44.66 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=34.4
Q ss_pred CCccceEEecccccccc-------cCh---HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRCLIPWS-------AND---GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~-------~d~---~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.++||.+.|..+++|.. -|+ ...+.++.++|||||.|+++.|--
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 57899999887776542 122 478899999999999999988655
No 268
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.98 E-value=1.1 Score=41.44 Aligned_cols=109 Identities=15% Similarity=0.049 Sum_probs=69.3
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPY 265 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~ 265 (392)
..+..+++++. .+. .+.||||-.|++..+|.+. .+++.|+++.-+..+..++.+..-.+.+....++-..++
T Consensus 5 ~RL~~va~~V~--~~~--~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 5 KRLTTVANLVK--QGA--RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL 80 (226)
T ss_pred HHHHHHHHHHH--cCC--ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc
Confidence 45566666665 333 4999999999999999987 678888888666655444444444455555555554445
Q ss_pred C-CCccceEEecccccccccChHHHHHHHHHhccCCeEEEE
Q 036725 266 P-SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 266 ~-d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl 305 (392)
. +..+|.|+...+--. -...+|.+-.+-|+-==+|++
T Consensus 81 ~~~d~~d~ivIAGMGG~---lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 81 ELEDEIDVIVIAGMGGT---LIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred CccCCcCEEEEeCCcHH---HHHHHHHHhhhhhcCcceEEE
Confidence 4 447999987643210 224566776666653335555
No 269
>PRK11524 putative methyltransferase; Provisional
Probab=90.30 E-value=0.67 Score=44.73 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=30.5
Q ss_pred CCCCCccceEEeccccc----------ccc-----cChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLI----------PWS-----ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~----------~~~-----~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+++++||+|+++--.. .+. .-...++.++.|+|||||.+++..
T Consensus 22 ~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 22 KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 35688999999863210 010 011468899999999999999864
No 270
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=89.17 E-value=0.61 Score=38.35 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.8
Q ss_pred ceEEEECCcCchHHHHHhhCCcEEEeC
Q 036725 207 RTALDTGCGVASWGAYLFKKNVITMSF 233 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~~v~~vd~ 233 (392)
....|||||.|-+.-.|.+.++.|..+
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CceEEccCCchHHHHHHHhCCCCcccc
Confidence 379999999999999998887776655
No 271
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=88.55 E-value=4.4 Score=35.96 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=56.1
Q ss_pred ECCcCchHHHHHhhC-----CcEEEeCCccCh-------HHHHHHHHHHcCCCcEEEEeccc---cCCCCCCccceEEec
Q 036725 212 TGCGVASWGAYLFKK-----NVITMSFAPRDS-------HEAQVQFALERGVPAVIGVLGTI---KLPYPSRAFDMAHCS 276 (392)
Q Consensus 212 iGCG~G~~~~~L~~~-----~v~~vd~s~~d~-------~~a~~~~a~~rg~~~~~~~~~~~---~lp~~d~sFDlV~~~ 276 (392)
||=|.=+|+..|++. ++++..+...+. ....++..++.|......+-... ......+.||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 566666888888876 566766643221 11122222445654444333332 223357899999976
Q ss_pred ccccccc-----c------C-hHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWS-----A------N-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~-----~------d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+--.... . . ...++..+.++|+++|.+.++.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 4221100 0 0 1368899999999999999975
No 272
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.93 E-value=1 Score=42.18 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=58.3
Q ss_pred CeEEecCCCC-CCCccHHHHHHHHHhhCCCCC----CCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHH
Q 036725 173 NVFRFPGGGT-QFPHGADAYIEELASVIPMDS----GMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQV 243 (392)
Q Consensus 173 ~~~~fp~~g~-~f~~~~~~~i~~l~~~l~~~~----~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~ 243 (392)
.+|-+|.+-- .--++...|+..+++++.... +...++||||.|.--.=..+--+ +++|.|+++..++.++.
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ 120 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKA 120 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHH
Confidence 3455665431 112355568888877775433 34457999998865433322222 67777777666666555
Q ss_pred HHHHHcCCCc-EEE-EeccccCCC-----CCCccceEEecccc
Q 036725 244 QFALERGVPA-VIG-VLGTIKLPY-----PSRAFDMAHCSRCL 279 (392)
Q Consensus 244 ~~a~~rg~~~-~~~-~~~~~~lp~-----~d~sFDlV~~~~~l 279 (392)
......++.. +.. ...+.+--| ..+.||++.|+--+
T Consensus 121 ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPF 163 (292)
T COG3129 121 IISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPF 163 (292)
T ss_pred HHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCc
Confidence 4444333322 111 222221112 25789999998654
No 273
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=87.66 E-value=5.6 Score=37.77 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=61.4
Q ss_pred ceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCC---CC-CccceEE
Q 036725 207 RTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPY---PS-RAFDMAH 274 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~---~d-~sFDlV~ 274 (392)
-+.+|+|.|+-.=++.|.+. .++.+|++..-+.........+..--.+..+.++..+++ +. ++==+++
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~f 159 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVF 159 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEE
Confidence 38999999999877777653 577787776444444444444432223444555543321 11 1112223
Q ss_pred ecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+-.+.+++ ..+|.++...|+||-+|++-+
T Consensus 160 lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 160 LGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred ecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 333444555444 689999999999999999954
No 274
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=87.48 E-value=1.3 Score=40.81 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=47.8
Q ss_pred eEEEECCcCchHHHHHhh--------CCcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccccCC-----C----CCC
Q 036725 208 TALDTGCGVASWGAYLFK--------KNVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTIKLP-----Y----PSR 268 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~--------~~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~~lp-----~----~d~ 268 (392)
+|+++|.-.|.-+..+++ .+|+++|+........ +.+. -.+.+.++.++...+ . ...
T Consensus 35 ~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~----a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 35 LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK----AIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-----GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH----HHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 899999988866654432 3899999943322221 1121 114556666654221 1 112
Q ss_pred ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.-.+|+-. ..|..++..+.|+-...++++|+|+++.+
T Consensus 111 ~~vlVilD--s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 111 HPVLVILD--SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SSEEEEES--S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CceEEEEC--CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 33455543 23555577788888999999999999964
No 275
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.44 E-value=3 Score=41.80 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=55.9
Q ss_pred eEEEECCcC-chHHHHHhhC-C---cEEEeCCccChHHHHHHHHHHc-CCCcEEEEecc-c--cC-CC-CCCccceEEec
Q 036725 208 TALDTGCGV-ASWGAYLFKK-N---VITMSFAPRDSHEAQVQFALER-GVPAVIGVLGT-I--KL-PY-PSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~-~---v~~vd~s~~d~~~a~~~~a~~r-g~~~~~~~~~~-~--~l-p~-~d~sFDlV~~~ 276 (392)
+||.+|+|. |..+..+++. + +++++. ++...+.+++. +...+...... . .+ .+ ..+.+|+|+..
T Consensus 187 ~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~-----~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 187 TVAVWGCGPVGLFAARSAKLLGAERVIAIDR-----VPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----CHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 899999987 7787777776 2 555544 34466677766 33111111110 1 01 11 23469999864
Q ss_pred cccc--------------ccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLI--------------PWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~--------------~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-.-. +-..+....+.++.+.|+++|.+++.+
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2100 001134567899999999999999875
No 276
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=86.42 E-value=6.2 Score=41.24 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=68.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCCC-c-EEEEe
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGVP-A-VIGVL 258 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~~-~-~~~~~ 258 (392)
.+.++.+++++...... +|+|-.||+|++.....+. .+.|.++......-+...... +|++ . .....
T Consensus 172 ~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~i~~~ 248 (489)
T COG0286 172 REVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDANIRHG 248 (489)
T ss_pred HHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCcccccccc
Confidence 45677778877753443 8999999999876544432 255666544333332222222 3433 2 22222
Q ss_pred ccccCCC-----CCCccceEEecccc--ccccc---------------------C-hHHHHHHHHHhccCCeEEEEEcCC
Q 036725 259 GTIKLPY-----PSRAFDMAHCSRCL--IPWSA---------------------N-DGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 259 ~~~~lp~-----~d~sFDlV~~~~~l--~~~~~---------------------d-~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++..-|. ..+.||.|+++.-+ ..|.. . ...++..+.+.|+|||...++.|.
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 2223332 33679999987322 11111 1 147899999999999977766544
Q ss_pred C
Q 036725 310 I 310 (392)
Q Consensus 310 ~ 310 (392)
.
T Consensus 329 g 329 (489)
T COG0286 329 G 329 (489)
T ss_pred C
Confidence 4
No 277
>PRK10742 putative methyltransferase; Provisional
Probab=86.35 E-value=4.7 Score=38.27 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=51.5
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc-------CC---CcEEEEecc
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER-------GV---PAVIGVLGT 260 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r-------g~---~~~~~~~~~ 260 (392)
+.|++.+....+..-+|||+=+|.|..+..++.+ .|+.++-++.. .+.++...++ +. ..+..+.++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~v--aalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVV--AALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHH--HHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 3455556555554348999999999999999988 67888776542 2222222222 11 234444444
Q ss_pred c--cCCCCCCccceEEecccc
Q 036725 261 I--KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 261 ~--~lp~~d~sFDlV~~~~~l 279 (392)
. -|.-...+||+|+..-.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCC
Confidence 3 232223479999987655
No 278
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=86.21 E-value=4.3 Score=39.13 Aligned_cols=88 Identities=24% Similarity=0.308 Sum_probs=53.0
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c--C-CCCCCccceEEecccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K--L-PYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~--l-p~~d~sFDlV~~~~~l 279 (392)
+||..|+| .|..+..+++. ++++++. ++...+.+++.+...+....... . + ....+.+|+|+....
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G~~V~~~~~-----s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMGAAVIAVDI-----KEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEcC-----CHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC-
Confidence 77888876 47777777775 4444433 33455566666653332211111 0 0 123567999885321
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.++.+.|+++|.++..+
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 242 ------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEC
Confidence 1346889999999999999864
No 279
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=86.17 E-value=0.25 Score=47.45 Aligned_cols=38 Identities=11% Similarity=0.285 Sum_probs=25.7
Q ss_pred ccceEEecccccccccChHHH-HHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSANDGMY-MMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~-L~ei~RvLkPGG~lvl~~ 307 (392)
.||+|.++..+.... ....+ +......++++|.+++.+
T Consensus 196 ~ydlIlsSetiy~~~-~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 196 HYDLILSSETIYSID-SLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred chhhhhhhhhhhCcc-hhhhhHhhhhhhcCCccchhhhhh
Confidence 688888876653322 22333 667778889999998864
No 280
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=85.24 E-value=3.8 Score=38.86 Aligned_cols=142 Identities=20% Similarity=0.202 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL 263 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l 263 (392)
.++..+.+...++ ...+|+|||||.=-++...... .+++.|++...+.. ...+....+.+....+.+...-
T Consensus 92 Ld~fY~~if~~~~----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~-l~~~l~~l~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 92 LDEFYDEIFGRIP----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEF-LNAFLAVLGVPHDARVRDLLSD 166 (251)
T ss_dssp HHHHHHHHCCCS-------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHH-HHHHHHHTT-CEEEEEE-TTTS
T ss_pred HHHHHHHHHhcCC----CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHH-HHHHHHhhCCCcceeEeeeecc
Confidence 4555555554443 2349999999999988877665 67888875532221 1122234454444444443322
Q ss_pred CCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCW 342 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W 342 (392)
.+....|+.+..-++ |..+.. .....++...++ .=.++++-|........++ -...+...++..+..-.|
T Consensus 167 -~~~~~~DlaLllK~l-p~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~g------m~~~y~~~fe~~~~~~~~ 237 (251)
T PF07091_consen 167 -PPKEPADLALLLKTL-PCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKG------MEQTYSAWFEALAAERGW 237 (251)
T ss_dssp -HTTSEESEEEEET-H-HHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TT------HHHCHHHHHHHHCCTTCE
T ss_pred -CCCCCcchhhHHHHH-HHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccc------cccCHHHHHHHhcccCCc
Confidence 346778999876544 332111 112222223332 3355556554433222111 122244567777655555
Q ss_pred e
Q 036725 343 E 343 (392)
Q Consensus 343 ~ 343 (392)
.
T Consensus 238 ~ 238 (251)
T PF07091_consen 238 I 238 (251)
T ss_dssp E
T ss_pred e
Confidence 4
No 281
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.11 E-value=5.6 Score=38.99 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=52.3
Q ss_pred ceEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec-cc-cCCCCCCccceEEecccc
Q 036725 207 RTALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG-TI-KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~~-~lp~~d~sFDlV~~~~~l 279 (392)
.+||=+|+| .|.++..+++. .|++++. ++...+.+++.|...++.... +. ++....+.||+|+-.-.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~-----~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV-----SPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC-----CHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC-
Confidence 378878875 35566666654 3556654 344667787777543321111 11 11111235899885421
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+....+.||+||.+++.+
T Consensus 245 ------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 245 ------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1235778889999999999876
No 282
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=84.89 E-value=3.8 Score=38.87 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=28.2
Q ss_pred cceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 270 FDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
||+|+++.+..+-. ..+.++.-+...|-.+|.+++..
T Consensus 163 ~DlilasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 163 FDLILASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred ccEEEEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEE
Confidence 99999998874433 55778888888888888666654
No 283
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=84.34 E-value=3 Score=43.50 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=70.0
Q ss_pred HHHHHHHhhCCCCCC-CcceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc
Q 036725 190 AYIEELASVIPMDSG-MVRTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT 260 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~-~~~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~ 260 (392)
+....|.++.+.... ....|+=+|.|-|-+....++. ++++++-.|..+..-+...-..-. ..+.++..+
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~-~~Vtii~~D 429 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD-NRVTIISSD 429 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc-CeeEEEecc
Confidence 344555555553322 2346788999999777555432 667777777644332221111112 344555555
Q ss_pred c-cCCCCCCccceEEecccccccccCh--HHHHHHHHHhccCCeEEEEE
Q 036725 261 I-KLPYPSRAFDMAHCSRCLIPWSAND--GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 261 ~-~lp~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~lvl~ 306 (392)
. .++-|....|++++-. |-.+.++. ...|.-+-+.|||+|+.|=.
T Consensus 430 MR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 430 MRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred ccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 5 6665568899998752 33444333 58999999999999987764
No 284
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=84.24 E-value=2.1 Score=43.27 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=57.8
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCc--EEEEeccc-c-CCCCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPA--VIGVLGTI-K-LPYPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~--~~~~~~~~-~-lp~~d~sFDlV~~~~ 277 (392)
.++||.=+|+|.=+...+.. .|+.-|+++.. -+...+.+.-+++.. +.....+. . +....+.||+|=..
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a-~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEA-VELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHH-HHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHH-HHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 38999999999666555543 56666776532 222333444556655 44444444 2 22357889999643
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++. .+..+|..+.+.+|.||++.++.
T Consensus 129 ---PfG-Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 ---PFG-SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS---HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCC-CccHhHHHHHHHhhcCCEEEEec
Confidence 555 67789999999999999999974
No 285
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=82.64 E-value=3.1 Score=42.74 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=57.2
Q ss_pred ceEEEECCcCc--hHHHHHhhC----CcEEEeCCccChHHHHHHHHH-------HcCCCcEEE-EeccccCCCCC-Cccc
Q 036725 207 RTALDTGCGVA--SWGAYLFKK----NVITMSFAPRDSHEAQVQFAL-------ERGVPAVIG-VLGTIKLPYPS-RAFD 271 (392)
Q Consensus 207 ~~VLDiGCG~G--~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~-------~rg~~~~~~-~~~~~~lp~~d-~sFD 271 (392)
..++|+|.|.| .+++.+..+ .+..||-+ .++..+.. +.|-+.+.- +.-...+|... +.||
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs-----~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yD 276 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRS-----RAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYD 276 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccc-----hHHHHHHHHhhcChhhcCchhccccchhcccCCCCccccee
Confidence 37888887765 555555554 45666544 33333332 122111111 22334677654 4599
Q ss_pred eEEecccccccccCh--HHHHHH-HHHhccCCeEEEEEcCCC
Q 036725 272 MAHCSRCLIPWSAND--GMYMME-IDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 272 lV~~~~~l~~~~~d~--~~~L~e-i~RvLkPGG~lvl~~p~~ 310 (392)
+|+|++.+++..... ....++ ..+..++||++++..+..
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999999998765322 234444 445678899999875544
No 286
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=82.17 E-value=13 Score=37.42 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=57.5
Q ss_pred eEEEECCcCc----hHHHHHhhC-------CcEEEeC----Ccc---ChHHHHHHHHHHcCCCcEEEEe--ccc-c----
Q 036725 208 TALDTGCGVA----SWGAYLFKK-------NVITMSF----APR---DSHEAQVQFALERGVPAVIGVL--GTI-K---- 262 (392)
Q Consensus 208 ~VLDiGCG~G----~~~~~L~~~-------~v~~vd~----s~~---d~~~a~~~~a~~rg~~~~~~~~--~~~-~---- 262 (392)
.|+|+|.|.| ++...|+.+ +||+++. ... +......++|+..|++-.+... ... .
T Consensus 113 HIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~ 192 (374)
T PF03514_consen 113 HIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPS 192 (374)
T ss_pred EEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHH
Confidence 7999999999 444555554 6888877 222 2333444677777887554432 111 2
Q ss_pred -CCCCCCccceEEecccccccccC------hHHHHHHHHHhccCCeEEEEE
Q 036725 263 -LPYPSRAFDMAHCSRCLIPWSAN------DGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 -lp~~d~sFDlV~~~~~l~~~~~d------~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+...++..=+|.|...+++...+ +...+-...|-|+|.-..+..
T Consensus 193 ~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 193 MLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred HhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 22333444444465666665422 334455677789999666664
No 287
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.33 E-value=6.3 Score=41.41 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=57.0
Q ss_pred cceEEEECCcCc-hHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc---------C---------
Q 036725 206 VRTALDTGCGVA-SWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---------L--------- 263 (392)
Q Consensus 206 ~~~VLDiGCG~G-~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~---------l--------- 263 (392)
..+|+=+|+|.- ..+...++. .|+++|. +....+.+++.|............ +
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~-----~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDT-----RPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeC-----CHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 348999999964 444445444 5666655 445666777776532211110000 0
Q ss_pred -CCCC--CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 -PYPS--RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 -p~~d--~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.+ +.+|+|+..- ..+-.+.+..+.+++.+.+||||.++..+
T Consensus 240 ~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 240 ALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 0111 4699999763 32322234445699999999999998865
No 288
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.65 E-value=11 Score=37.02 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=52.8
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC--CCCCCccceEEecccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL--PYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l--p~~d~sFDlV~~~~~l~~ 281 (392)
+||=+|+| .|.++..+++. ++++++-+ +.+....+.+++.|...+ ......+ ....+.||+|+-.-.
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~--~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g--- 247 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRR--DPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG--- 247 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEecC--CCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC---
Confidence 78888876 36666667665 45555432 223456667777775321 1111110 001246898885421
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEc
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.+..++|++||.+++.+
T Consensus 248 ----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 ----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred ----CHHHHHHHHHHccCCcEEEEEe
Confidence 1236788999999999998865
No 289
>PHA01634 hypothetical protein
Probab=78.90 E-value=8.2 Score=32.96 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=23.6
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAP 235 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~ 235 (392)
++|+|||.+.|..+.+++-+ .|++++.++
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~ 61 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGASFVVQYEKEE 61 (156)
T ss_pred CEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence 48999999999999888765 677776544
No 290
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=78.76 E-value=5.3 Score=38.79 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=60.4
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH------cC--CCcEEEEeccc-c-C-CCCCCc
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE------RG--VPAVIGVLGTI-K-L-PYPSRA 269 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~------rg--~~~~~~~~~~~-~-l-p~~d~s 269 (392)
..+++|=||.|.|.+.....++ ++.-+|+ .++.++..++ .| -+.+....++- . + ..+.+.
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~ei-----D~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEI-----DENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehh-----hHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence 3458999999999999888877 4555544 2233333322 11 13444455543 1 1 234789
Q ss_pred cceEEecccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 270 FDMAHCSRCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
||+|+.-.. .+..+. ...++..+.+.||+||+++..+
T Consensus 196 ~dVii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 196 FDVIITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ceEEEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 999986421 122111 1467888999999999999976
No 291
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=76.80 E-value=24 Score=35.65 Aligned_cols=93 Identities=9% Similarity=-0.031 Sum_probs=58.5
Q ss_pred eEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccccCh-
Q 036725 208 TALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSAND- 286 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~- 286 (392)
.||=++=..|.++..|+...++.+ -+....+.+..+.+...+++...+..-+...+++. .+|+|+.. ++...
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~-~~d~vl~~-----~PK~~~ 119 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI-GDSYISELATRENLRLNGIDESSVKFLDSTADYPQ-QPGVVLIK-----VPKTLA 119 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee-ehHHHHHHHHHHHHHHcCCCcccceeecccccccC-CCCEEEEE-----eCCCHH
Confidence 689999999999999997766544 11223344455555666665321111122223334 48998753 44332
Q ss_pred --HHHHHHHHHhccCCeEEEEEc
Q 036725 287 --GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 287 --~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+..|..+.++|.||+.++..+
T Consensus 120 ~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 120 LLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEE
Confidence 578889999999999987654
No 292
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=75.75 E-value=2.8 Score=34.66 Aligned_cols=83 Identities=28% Similarity=0.303 Sum_probs=52.6
Q ss_pred cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-----cCCCCCCccceEEecccccccccCh
Q 036725 215 GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-----KLPYPSRAFDMAHCSRCLIPWSAND 286 (392)
Q Consensus 215 G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-----~lp~~d~sFDlV~~~~~l~~~~~d~ 286 (392)
|.|.++..+++. +|++++. ++...+.+++.|...++...... .-..+.+.+|+|+-.- .-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~-----~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-------g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDR-----SEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-------GS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEES-----SHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESS-------SS
T ss_pred ChHHHHHHHHHHcCCEEEEEEC-----CHHHHHHHHhhcccccccccccccccccccccccccceEEEEec-------Cc
Confidence 457777777765 6677754 44567788888843332211110 0113345799998532 12
Q ss_pred HHHHHHHHHhccCCeEEEEEcCC
Q 036725 287 GMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 287 ~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
...+.+...+|+++|.+++.+-.
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHHHhccCCEEEEEEcc
Confidence 46789999999999999998643
No 293
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=75.70 E-value=9.8 Score=37.27 Aligned_cols=82 Identities=10% Similarity=0.133 Sum_probs=50.5
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP- 264 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp- 264 (392)
+++.+++.+...++. .++|.=+|.|..+..++++ .++++|.++..+..+..... .. ...+.++.++. .+.
T Consensus 8 ll~Evl~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~-~~-~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 8 LLDEVVEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS-DF-EGRVVLIHDNFANFFE 83 (305)
T ss_pred hHHHHHHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh-hc-CCcEEEEeCCHHHHHH
Confidence 456666666654544 8999999999999999875 58888886654433322221 11 13455555554 221
Q ss_pred ----CCCCccceEEec
Q 036725 265 ----YPSRAFDMAHCS 276 (392)
Q Consensus 265 ----~~d~sFDlV~~~ 276 (392)
...+++|.|+..
T Consensus 84 ~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 84 HLDELLVTKIDGILVD 99 (305)
T ss_pred HHHhcCCCcccEEEEe
Confidence 133568888765
No 294
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.60 E-value=12 Score=32.78 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccCh
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDS 238 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~ 238 (392)
.+.++.++++++..+.. +.+|+|.|.|......++. +.+++++++.-+
T Consensus 58 teQv~nVLSll~~n~~G--klvDlGSGDGRiVlaaar~g~~~a~GvELNpwLV 108 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKG--KLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLV 108 (199)
T ss_pred HHHHHHHHHHccCCCCC--cEEeccCCCceeehhhhhhCCCcCCceeccHHHH
Confidence 34455566666643322 7999999999887777665 677887766433
No 295
>KOG2730 consensus Methylase [General function prediction only]
Probab=75.10 E-value=2.2 Score=39.65 Aligned_cols=68 Identities=24% Similarity=0.244 Sum_probs=43.2
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEecccc-----CCCCCCccceEEec
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK-----LPYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~~-----lp~~d~sFDlV~~~ 276 (392)
.|+|.-||.|..+...+.+ .|+++|++|.-+.-+ ...++-.|++ .+.+++++.- +.+.-..+|+|+.+
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~A-khNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACA-RHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHH-hccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 7999999999888888877 788999877533221 1122234654 4677777762 33333345577654
No 296
>PRK11524 putative methyltransferase; Provisional
Probab=73.00 E-value=14 Score=35.48 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=32.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHh--hCCcEEEeCCcc
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLF--KKNVITMSFAPR 236 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~--~~~v~~vd~s~~ 236 (392)
..+++.+++.... .|+ .|||-=+|+|+.+.... .|+++|+|+++.
T Consensus 195 ~~L~erlI~~~S~-~GD--~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~ 241 (284)
T PRK11524 195 EALLKRIILASSN-PGD--IVLDPFAGSFTTGAVAKASGRKFIGIEINSE 241 (284)
T ss_pred HHHHHHHHHHhCC-CCC--EEEECCCCCcHHHHHHHHcCCCEEEEeCCHH
Confidence 6677777777653 343 89999999997766544 459999988653
No 297
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=72.70 E-value=38 Score=29.99 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=49.9
Q ss_pred ceEEEECCcCchHHHHH---hhCCcEEEeCCccChHHHHHHHHHHcCCC-cEEEEecc-ccCC--CCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYL---FKKNVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGT-IKLP--YPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L---~~~~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~-~~lp--~~d~sFDlV~~~~~l 279 (392)
.+|+-|||=+-.....- ...++.-.|++.+ ++. -+.+ -+.+.... ..+| + .++||+|++.--+
T Consensus 27 ~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R--------F~~-~~~~~F~fyD~~~p~~~~~~l-~~~~d~vv~DPPF 96 (162)
T PF10237_consen 27 TRIACLSTPSLYEALKKESKPRIQSFLLEYDRR--------FEQ-FGGDEFVFYDYNEPEELPEEL-KGKFDVVVIDPPF 96 (162)
T ss_pred CEEEEEeCcHHHHHHHhhcCCCccEEEEeecch--------HHh-cCCcceEECCCCChhhhhhhc-CCCceEEEECCCC
Confidence 38999999776555444 1227788888432 333 2212 11111111 1333 3 5799999987532
Q ss_pred cccccCh-HHHHHHHHHhccCCeEEEEEcC
Q 036725 280 IPWSAND-GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 280 ~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..++- .++..-+.-++|+++.+++.++
T Consensus 97 --l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 97 --LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred --CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 12122 3455556666688898888753
No 298
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=72.51 E-value=6.9 Score=39.06 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=34.5
Q ss_pred CeEEecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC------------CcEEEeCCc
Q 036725 173 NVFRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK------------NVITMSFAP 235 (392)
Q Consensus 173 ~~~~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------------~v~~vd~s~ 235 (392)
|-+.-|.=+..|......++-++.+.+.. .....++++|.|.|.++.-+++. .+..++.++
T Consensus 47 DFiTApels~lFGella~~~~~~wq~~g~--p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 47 DFITAPELSQLFGELLAEQFLQLWQELGR--PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred CeeechhHHHHHHHHHHHHHHHHHHHhcC--CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 33344444444543333333333333332 22347999999999988877653 456666655
No 299
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=71.47 E-value=14 Score=36.74 Aligned_cols=88 Identities=24% Similarity=0.218 Sum_probs=56.2
Q ss_pred eEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc--c---cCCCCC-CccceEEec
Q 036725 208 TALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT--I---KLPYPS-RAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~--~---~lp~~d-~sFDlV~~~ 276 (392)
+|+=+|||. |.++..+++. .|+++|. ++..++.|++.+.......... . .+.... ..||+|+-.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~-----~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDR-----SPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCC-----CHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 899999995 7776666665 6777744 5567788887442222111111 0 011112 369999854
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-. ....+.++.+++||||.+++.+
T Consensus 246 ~G-------~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 246 VG-------SPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred CC-------CHHHHHHHHHHhcCCCEEEEEe
Confidence 22 2337899999999999999975
No 300
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=70.60 E-value=18 Score=39.17 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=27.2
Q ss_pred CccceEEecccccccccCh----HHHHHHHHHhccCCeEEEE
Q 036725 268 RAFDMAHCSRCLIPWSAND----GMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~----~~~L~ei~RvLkPGG~lvl 305 (392)
..||+++... +.+-. ++ ..+|.++.|+++|||.|.-
T Consensus 165 ~~~d~~~lD~-FsP~~-np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 165 ARADAWFLDG-FAPAK-NPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ccccEEEeCC-CCCcc-ChhhccHHHHHHHHHHhCCCCEEEE
Confidence 5699999763 32322 33 5899999999999999985
No 301
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=69.96 E-value=11 Score=35.48 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=43.3
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChH--HHHHHHHHHcC-C-----CcEEEEeccc-
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSH--EAQVQFALERG-V-----PAVIGVLGTI- 261 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~--~a~~~~a~~rg-~-----~~~~~~~~~~- 261 (392)
+.|++......+...+|||.=+|-|.-+..++.. +|++++-+|.... ....+.+.... . ..+..+.++.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 3455566555554448999999999877766644 7899987764211 11112222211 1 2355555554
Q ss_pred -cCCCCCCccceEEeccccc
Q 036725 262 -KLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 262 -~lp~~d~sFDlV~~~~~l~ 280 (392)
-|..++++||+|...-++.
T Consensus 143 ~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 143 EYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp CHCCCHSS--SEEEE--S--
T ss_pred HHHhhcCCCCCEEEECCCCC
Confidence 4556689999999886653
No 302
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=69.39 E-value=32 Score=33.53 Aligned_cols=83 Identities=23% Similarity=0.186 Sum_probs=49.8
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+||=.|+| .|.++..+++. ++++++. +....+.+++.|...++. .... ..+.+|+++-...
T Consensus 168 ~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~-----~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~----- 232 (329)
T TIGR02822 168 RLGLYGFGGSAHLTAQVALAQGATVHVMTR-----GAAARRLALALGAASAGG---AYDT--PPEPLDAAILFAP----- 232 (329)
T ss_pred EEEEEcCCHHHHHHHHHHHHCCCeEEEEeC-----ChHHHHHHHHhCCceecc---cccc--CcccceEEEECCC-----
Confidence 78888865 34555555554 4555543 233567788887644321 1111 1245787653211
Q ss_pred cChHHHHHHHHHhccCCeEEEEEc
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ...+.+..+.|++||.+++.+
T Consensus 233 -~-~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 233 -A-GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred -c-HHHHHHHHHhhCCCcEEEEEe
Confidence 1 246888999999999999865
No 303
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=69.12 E-value=14 Score=36.92 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=58.6
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH----c-CCCcEEEEeccc-cCCC-CCCccceEE
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE----R-GVPAVIGVLGTI-KLPY-PSRAFDMAH 274 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~----r-g~~~~~~~~~~~-~lp~-~d~sFDlV~ 274 (392)
..+|||.=+|+|.=+...+.. .++.-|++| ..++.+++ + +.....+. .+. .+-. ....||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp-----~Avelik~Nv~~N~~~~~~v~n-~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISP-----KAVELIKENVRLNSGEDAEVIN-KDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCH-----HHHHHHHHHHHhcCcccceeec-chHHHHHHhcCCCccEEe
Confidence 348999999999888777765 344455555 34444432 2 33333333 333 2222 137899984
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.++. .+..++....+.+|.||++.++.
T Consensus 127 ----iDPFG-SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 127 ----IDPFG-SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred ----cCCCC-CCchHHHHHHHHhhcCCEEEEEe
Confidence 33555 66778999999999999999963
No 304
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=67.60 E-value=41 Score=32.31 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=49.0
Q ss_pred eEEEECCc-CchHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC----CCCCCccceEEeccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL----PYPSRAFDMAHCSRC 278 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l----p~~d~sFDlV~~~~~ 278 (392)
+||-+|+| .|..+..+++. + +++++- +....+.+.+.+.... +....... ....+.+|+|+....
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~-----~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~vd~v~~~~~ 235 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNGASRVTVAEP-----NEEKLELAKKLGATET-VDPSREDPEAQKEDNPYGFDVVIEATG 235 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECC-----CHHHHHHHHHhCCeEE-ecCCCCCHHHHHHhcCCCCcEEEECCC
Confidence 78888864 24555555554 3 444433 2334455566665421 11111110 113456999986421
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.++.+.|+++|.++..+
T Consensus 236 -------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 236 -------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEe
Confidence 1346788899999999998765
No 305
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=67.13 E-value=37 Score=32.64 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=49.0
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+||-+|+| .|..+..+++. ++++++- +....+.+++.+....+.........-..+.+|+|+....
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~----- 234 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAMGFETVAITR-----SPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV----- 234 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeC-----CHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-----
Confidence 78888886 56666666655 4555433 2334555555553322211111100001246898885321
Q ss_pred cChHHHHHHHHHhccCCeEEEEEc
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.++.+.|+++|.++..+
T Consensus 235 --~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 --SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --cHHHHHHHHHhcccCCEEEEEC
Confidence 1235788899999999998865
No 306
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=66.18 E-value=35 Score=32.27 Aligned_cols=87 Identities=22% Similarity=0.142 Sum_probs=50.1
Q ss_pred eEEEECCc-CchHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc----cCCCCCCccceEEeccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI----KLPYPSRAFDMAHCSRC 278 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~----~lp~~d~sFDlV~~~~~ 278 (392)
+||=+|+| .|.++..+++. . |++++. +....+.+++.|...++...... .+. ....+|+|+-.-.
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid~~G 196 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAADP-----SPDRRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALEFSG 196 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECC-----CHHHHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEECCC
Confidence 78888875 34555555554 3 555543 33455677777753322111100 111 2345898875311
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.+..+.|+++|.+++.+
T Consensus 197 -------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 197 -------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -------ChHHHHHHHHHhcCCCEEEEec
Confidence 1345788899999999999865
No 307
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=65.76 E-value=43 Score=30.57 Aligned_cols=89 Identities=27% Similarity=0.240 Sum_probs=51.1
Q ss_pred ceEEEECCcC-chHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC-----CCCCCccceEEecc
Q 036725 207 RTALDTGCGV-ASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL-----PYPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~-G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l-----p~~d~sFDlV~~~~ 277 (392)
.+||-+|+|. |..+..+++. ++++++.+ +...+.+++.+..... ....... ....+.+|+|+...
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGARVIVTDRS-----DEKLELAKELGADHVI-DYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC-----HHHHHHHHHhCCceec-cCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 3899999885 6666666654 55666443 2334455555532221 1111010 11245799998642
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.. ...+..+.+.|+++|.++..+.
T Consensus 210 ~~-------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 210 GG-------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CC-------HHHHHHHHHhcccCCEEEEEcc
Confidence 11 1356778899999999998653
No 308
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=65.28 E-value=27 Score=33.73 Aligned_cols=89 Identities=19% Similarity=0.289 Sum_probs=49.5
Q ss_pred ceEEEECCcC-chHHHHHhhC-C---cEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-c-cCCCCCCccceEEecccc
Q 036725 207 RTALDTGCGV-ASWGAYLFKK-N---VITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-I-KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~-G~~~~~L~~~-~---v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~-~lp~~d~sFDlV~~~~~l 279 (392)
.+||-.|+|. |..+..+++. + +++++. ++.+.+.+++.+...++..... . .+....+.+|+|+....
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~-----s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g- 240 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGAAEIVATDL-----ADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG- 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECC-----CHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC-
Confidence 3788888764 5666666654 3 344432 3334445555554322211110 0 12212235899985421
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.++.+.|+++|.++..+
T Consensus 241 ------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 ------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1235788999999999999764
No 309
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=65.09 E-value=24 Score=34.73 Aligned_cols=88 Identities=24% Similarity=0.240 Sum_probs=53.7
Q ss_pred eEEEEC--CcCchHHHHHhhC-C--cEEEeCCccChHHHHHHHHHHcCCCcEEEEec-cc----cCCCCCCccceEEecc
Q 036725 208 TALDTG--CGVASWGAYLFKK-N--VITMSFAPRDSHEAQVQFALERGVPAVIGVLG-TI----KLPYPSRAFDMAHCSR 277 (392)
Q Consensus 208 ~VLDiG--CG~G~~~~~L~~~-~--v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~~----~lp~~d~sFDlV~~~~ 277 (392)
+||=.| .|.|+++..|++. . ++++.- +....+.+++.|-..++.... +. +-......+|+|+..-
T Consensus 145 ~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~-----s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 145 TVLVHGAAGGVGSAAIQLAKALGATVVAVVS-----SSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred EEEEecCCchHHHHHHHHHHHcCCcEEEEec-----CHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 788888 5577999999987 3 233322 223334777777544432111 11 1112234699998642
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
-...+.+..+.|+++|.++..+.
T Consensus 220 --------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 220 --------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred --------CHHHHHHHHHHhccCCEEEEEec
Confidence 24567888999999999998653
No 310
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=64.41 E-value=12 Score=33.70 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 286 DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 286 ~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
....+.++.|+|||||.+++.....
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHhhcCCCeeEEEEecch
Confidence 4678999999999999999976444
No 311
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=63.53 E-value=47 Score=32.00 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=51.1
Q ss_pred eEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC-----CCCCCccceEEecc
Q 036725 208 TALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL-----PYPSRAFDMAHCSR 277 (392)
Q Consensus 208 ~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l-----p~~d~sFDlV~~~~ 277 (392)
+||=.|. |.|.++..+++. ++++++- +....+.+++.|...++.......+ ....+.+|+|+-..
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~-----s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG-----SDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcCCEEEEEeC-----CHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 7887773 577888888776 3444432 3345566777775433221111000 11234689887531
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ...+.+..++|+++|.++..+
T Consensus 216 G--------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 216 G--------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred C--------HHHHHHHHHHhCcCcEEEEec
Confidence 1 234688899999999999864
No 312
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=63.13 E-value=51 Score=32.35 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=50.3
Q ss_pred eEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-c--cC--CCCCCccceEEecc
Q 036725 208 TALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-I--KL--PYPSRAFDMAHCSR 277 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~--~l--p~~d~sFDlV~~~~ 277 (392)
+||=.|+| .|.++..+++. .|++++. ++...+++++.|...++-.... . .+ ......+|+|+-.-
T Consensus 179 ~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~-----~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 179 SVAVIGCGGVGDAAIAGAALAGASKIIAVDI-----DDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC-----CHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 78888875 35555556654 2555543 3446667777775332211111 0 00 01224589888531
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. . ...+.+..+.||+||.+++.+
T Consensus 254 g------~-~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 254 G------R-PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred C------C-HHHHHHHHHHhccCCEEEEEC
Confidence 1 1 235677889999999999875
No 313
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=62.73 E-value=5.6 Score=34.71 Aligned_cols=107 Identities=23% Similarity=0.229 Sum_probs=49.5
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh----CCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK----KNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KLP 264 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~----~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~lp 264 (392)
.++.++..+....| -|||+|=|.|..=-.|.+ +.|.++|-.- ..+...+ .+...+++++. .+|
T Consensus 17 ~L~~a~~~v~~~~G---~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l-~~hp~~~-------P~~~~~ilGdi~~tl~ 85 (160)
T PF12692_consen 17 CLNWAAAQVAGLPG---PVLELGLGNGRTYDHLREIFPDRRIYVFDRAL-ACHPSST-------PPEEDLILGDIRETLP 85 (160)
T ss_dssp HHHHHHHHTTT--S----EEEE--TTSHHHHHHHHH--SS-EEEEESS---S-GGG----------GGGEEES-HHHHHH
T ss_pred HHHHHHHHhcCCCC---ceEEeccCCCccHHHHHHhCCCCeEEEEeeec-ccCCCCC-------CchHheeeccHHHHhH
Confidence 45556666665566 499999999976666655 4899998642 1111111 12222344443 222
Q ss_pred ---CCCCccceEEecccccccccCh--HH-HHHHHHHhccCCeEEEEEcC
Q 036725 265 ---YPSRAFDMAHCSRCLIPWSAND--GM-YMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 265 ---~~d~sFDlV~~~~~l~~~~~d~--~~-~L~ei~RvLkPGG~lvl~~p 308 (392)
+.....-+||.......-..|. .. +-.-+..+|.|||+++-..|
T Consensus 86 ~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 86 ALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp HHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred HHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 2234556677654442211111 12 22446789999999876543
No 314
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=62.72 E-value=6.2 Score=40.87 Aligned_cols=91 Identities=15% Similarity=0.235 Sum_probs=57.5
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHH----cCCCcE-EEEeccc-----cCCCCCCccc
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALE----RGVPAV-IGVLGTI-----KLPYPSRAFD 271 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~----rg~~~~-~~~~~~~-----~lp~~d~sFD 271 (392)
.+|||.=+++|.-+...+.. .+++-|. +++.+....+ .++..+ .....+. ..+-.+..||
T Consensus 111 l~vLealsAtGlrslRya~El~~v~~v~AnD~-----~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 111 LRVLEALSATGLRSLRYAKELPGVRQVVANDL-----NENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred chHHHHhhhhhHHHHHHHHHhcchhhhcccCC-----CHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccc
Confidence 37999999999877777665 4444444 3334332222 222211 1112221 2344468899
Q ss_pred eEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 272 MAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 272 lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+|... ++. .+..+|....+.++.||++.++.
T Consensus 186 vIDLD----PyG-s~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 186 VIDLD----PYG-SPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred eEecC----CCC-CccHHHHHHHHHhhcCCEEEEEe
Confidence 99743 555 66789999999999999999964
No 315
>PRK13699 putative methylase; Provisional
Probab=62.10 E-value=29 Score=32.38 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh--CCcEEEeCCcc
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK--KNVITMSFAPR 236 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~--~~v~~vd~s~~ 236 (392)
..+++.+++.... .++ .|||-=||+|+.+....+ ++++++|+++.
T Consensus 150 ~~l~~~~i~~~s~-~g~--~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~ 196 (227)
T PRK13699 150 VTSLQPLIESFTH-PNA--IVLDPFAGSGSTCVAALQSGRRYIGIELLEQ 196 (227)
T ss_pred HHHHHHHHHHhCC-CCC--EEEeCCCCCCHHHHHHHHcCCCEEEEecCHH
Confidence 5566666665543 444 899999999987776655 48999998764
No 316
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=61.65 E-value=6.1 Score=38.47 Aligned_cols=126 Identities=21% Similarity=0.221 Sum_probs=72.9
Q ss_pred ceeccCCeE--EecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHH-HHhhC---CcEEEeCCccChHH
Q 036725 167 WIQYEGNVF--RFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGA-YLFKK---NVITMSFAPRDSHE 240 (392)
Q Consensus 167 w~~~~~~~~--~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~-~L~~~---~v~~vd~s~~d~~~ 240 (392)
|++.-++.+ .|..--+||..+--.-..+++.+.. .+ ..|.|+=+|.|+|+. .+... .|.+.+..|- .-+
T Consensus 158 WV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc--~~--eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~-svE 232 (351)
T KOG1227|consen 158 WVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSC--DG--EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPW-SVE 232 (351)
T ss_pred ceeehhcCeEEEechhhhhhhcCcHHHHHHhhhccc--cc--chhhhhhcccceEEeehhhccCccEEEEEecCHH-HHH
Confidence 555444433 3444445665544444445554443 22 379999999999998 55544 7889998874 445
Q ss_pred HHHHHHHHcCCC-cEEEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeE
Q 036725 241 AQVQFALERGVP-AVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGY 302 (392)
Q Consensus 241 a~~~~a~~rg~~-~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~ 302 (392)
+..+.++.+++. ......++.+.+-++...|-|... |++-. ++----.-.+|||.|-
T Consensus 233 aLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG--LlPSs---e~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 233 ALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG--LLPSS---EQGWPTAIKALKPEGG 290 (351)
T ss_pred HHHHHHHhcchHHHHHhhhccccccCccccchheeec--ccccc---ccchHHHHHHhhhcCC
Confidence 555555555442 223344556778788999999764 32322 1112234466777443
No 317
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=61.64 E-value=44 Score=33.08 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=50.0
Q ss_pred eEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc---cC-CCCCCccceEEeccc
Q 036725 208 TALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KL-PYPSRAFDMAHCSRC 278 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~---~l-p~~d~sFDlV~~~~~ 278 (392)
+||=+|+| .|.++..+++. .|++++. ++...+++++.|...++-..... .+ ....+.+|+|+-...
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAGASQVVAVDL-----NEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEEcC-----CHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence 67778875 35566666654 3555543 44466677777753322111100 00 011236899985311
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.+..+.|+++|.+++.+
T Consensus 269 -------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 269 -------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEc
Confidence 1235778889999999999865
No 318
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=61.58 E-value=45 Score=32.26 Aligned_cols=88 Identities=23% Similarity=0.201 Sum_probs=49.2
Q ss_pred eEEEECCc-CchHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-c-cC-C-CCCCccceEEeccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-I-KL-P-YPSRAFDMAHCSRC 278 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~-~l-p-~~d~sFDlV~~~~~ 278 (392)
+||=+|+| .|.++..+++. + +++++. ++...+.+++.|...++-.... . .+ . .....+|+|+-...
T Consensus 166 ~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~-----~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g 240 (339)
T cd08239 166 TVLVVGAGPVGLGALMLARALGAEDVIGVDP-----SPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG 240 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECC-----CHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC
Confidence 67777764 34455555554 4 666543 3445667777775332211110 0 00 0 12346999985321
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.+..+.|+++|.+++.+
T Consensus 241 -------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 241 -------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1234577789999999999865
No 319
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=61.08 E-value=21 Score=34.68 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=45.9
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCceec
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKK 345 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~ 345 (392)
.+-||+|+.+....|... .++.++++|+|.+++...-. -..-..+.+.....++.++++...|+..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~------p~l~~~~a~~A~LvvEtaKf-------mvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLK------PELFQALAPDAVLVVETAKF-------MVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred cCCCCEEEEhhhhHhhcc------hHHHHHhCCCCEEEEEcchh-------heeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 567999997755545441 35888999999999976311 0122356666777889999988888654
No 320
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=60.40 E-value=16 Score=38.44 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=55.3
Q ss_pred ceEEEECCcCc-hHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-------------c--c-----
Q 036725 207 RTALDTGCGVA-SWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-------------I--K----- 262 (392)
Q Consensus 207 ~~VLDiGCG~G-~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-------------~--~----- 262 (392)
.++|=+|+|.- ..+..++.. .|+++|..+ ...+.+++.|...+...... . .
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~-----~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP-----EVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 48999999964 555555554 566665533 34556665553321111100 0 0
Q ss_pred -CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEE
Q 036725 263 -LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 263 -lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl 305 (392)
++-.-..+|+|+.. ++++-.+.+..+.+++.+.+|||+.++-
T Consensus 240 ~~~e~~~~~DIVI~T-alipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 240 LFAAQAKEVDIIITT-ALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHhCCCCEEEEC-cccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 11112569999876 4555544556688999999999999874
No 321
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=59.96 E-value=33 Score=32.28 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=25.5
Q ss_pred ceEEEECCcCchHHHHHhhC------------CcEEEeCCccChHHHHHH
Q 036725 207 RTALDTGCGVASWGAYLFKK------------NVITMSFAPRDSHEAQVQ 244 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~------------~v~~vd~s~~d~~~a~~~ 244 (392)
-+|+|+|.|.|.++..+++. .++.++.++.. .+.|.+
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L-~~~Q~~ 68 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL-RERQKE 68 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC-HHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH-HHHHHH
Confidence 48999999999998877652 57888888853 333433
No 322
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=56.14 E-value=1.5e+02 Score=28.10 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=31.4
Q ss_pred CcEEEEeccc--cCC-CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 252 PAVIGVLGTI--KLP-YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 252 ~~~~~~~~~~--~lp-~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.+.++.+.. .+| .+.+.+-+++... .+-+.-...|..++-.|.|||++++..
T Consensus 157 ~~v~~vkG~F~dTLp~~p~~~IAll~lD~---DlYesT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 157 DNVRFVKGWFPDTLPDAPIERIALLHLDC---DLYESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp TTEEEEES-HHHHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred ccEEEECCcchhhhccCCCccEEEEEEec---cchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 4567777776 344 2344454444332 222223578999999999999999975
No 323
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=56.08 E-value=17 Score=32.72 Aligned_cols=45 Identities=18% Similarity=0.106 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCc
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAP 235 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~ 235 (392)
...+++++++.... +++ .|||.=||+|+.+.+..+. +.+++|+++
T Consensus 177 P~~l~~~lI~~~t~-~gd--iVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 177 PVELIERLIKASTN-PGD--IVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp -HHHHHHHHHHHS--TT---EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred CHHHHHHHHHhhhc-cce--eeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 35677777777653 344 8999999999877666554 789998754
No 324
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=55.39 E-value=20 Score=36.17 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=43.6
Q ss_pred HcCCCcEEEEeccc-c-C-CCCCCccceEEecccccccccCh--HHHHHHHHHhccCCeEEEEEc
Q 036725 248 ERGVPAVIGVLGTI-K-L-PYPSRAFDMAHCSRCLIPWSAND--GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 248 ~rg~~~~~~~~~~~-~-l-p~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.++..+....++. + + -.+++++|.++.+... .|.++. ...++++.|.++|||.+++-+
T Consensus 271 r~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 271 RARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred hcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 34557777777765 2 2 2568999999987665 565333 578999999999999999943
No 325
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=55.21 E-value=47 Score=26.45 Aligned_cols=80 Identities=15% Similarity=0.008 Sum_probs=47.2
Q ss_pred eEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccccChH
Q 036725 208 TALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDG 287 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~ 287 (392)
+|| +-||+|.-+..+++ .+.+.+.++|++......+..+++-....+|+|+... ...
T Consensus 5 ~IL-l~C~~G~sSS~l~~---------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~p-------qi~ 61 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVN---------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAP-------QVA 61 (95)
T ss_pred EEE-EECCCchhHHHHHH---------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECc-------hHH
Confidence 555 67888865554432 3566778888876544444334432234689998752 233
Q ss_pred HHHHHHHHhccCCeEEEEEcCCC
Q 036725 288 MYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 288 ~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..+.++...+.+-|.=+...++.
T Consensus 62 ~~~~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 62 YMLPDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred HHHHHHHHHhhhcCCCEEEeChh
Confidence 45677777776655555554444
No 326
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=54.42 E-value=85 Score=30.82 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=50.9
Q ss_pred eEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHH-HcCCCcEEEEec--cc--cC-CCCCCccceEEec
Q 036725 208 TALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFAL-ERGVPAVIGVLG--TI--KL-PYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~-~rg~~~~~~~~~--~~--~l-p~~d~sFDlV~~~ 276 (392)
+||=.|+ |.|.++..+++. ++++++- +....+.++ +.|...++-... +. .+ ....+.+|+|+-.
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~-----~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLHGCYVVGSAG-----SSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEEcC-----CHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 7888887 477888888776 3444432 233445554 466543322111 11 00 1112468988753
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-. ...+.+..+.|++||.+++.+
T Consensus 236 vG--------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 236 VG--------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CC--------HHHHHHHHHHhccCCEEEEEC
Confidence 11 236788899999999999865
No 327
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=53.66 E-value=72 Score=31.50 Aligned_cols=89 Identities=12% Similarity=0.043 Sum_probs=47.3
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+||=.|+| .|.++..+++. .+++++.+.. ...+.+++.|...++.......+.-..+.+|+|+-.-.
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~----~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g----- 256 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN----KEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS----- 256 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc----hhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC-----
Confidence 67778876 45666666655 4555554332 12234445564322211110011000124888874321
Q ss_pred cChHHHHHHHHHhccCCeEEEEEc
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.+..+.|++||.++..+
T Consensus 257 --~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 --AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred --CHHHHHHHHHHhcCCcEEEEeC
Confidence 1235788899999999999865
No 328
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=53.19 E-value=25 Score=28.41 Aligned_cols=65 Identities=17% Similarity=0.035 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 240 EAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 240 ~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
+.+.+.++++|++..+.......++-..+.+|+|+... .....+.++.+.+.+-|.-+...++..
T Consensus 18 ~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~P-------Qv~~~~~~i~~~~~~~~ipv~~I~~~~ 82 (99)
T cd05565 18 NALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAP-------QMASYYDELKKDTDRLGIKLVTTTGKQ 82 (99)
T ss_pred HHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcC-------hHHHHHHHHHHHhhhcCCCEEEeCHHH
Confidence 34677888999876655444445554455689887642 334567889999999888777765553
No 329
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=52.80 E-value=79 Score=30.17 Aligned_cols=86 Identities=21% Similarity=0.189 Sum_probs=50.0
Q ss_pred eEEEEC--CcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC-----CCCCCccceEEecc
Q 036725 208 TALDTG--CGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL-----PYPSRAFDMAHCSR 277 (392)
Q Consensus 208 ~VLDiG--CG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l-----p~~d~sFDlV~~~~ 277 (392)
+||=.| .|.|.++..+++. .+++++- +....+.+++.|...++. .....+ ....+.+|+|+-..
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~-----s~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~~~~gvd~vld~~ 219 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG-----SDDKVAWLKELGFDAVFN-YKTVSLEEALKEAAPDGIDCYFDNV 219 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEEeC-----CHHHHHHHHHcCCCEEEe-CCCccHHHHHHHHCCCCcEEEEECC
Confidence 777777 4567777777775 3444432 233455666666533321 111110 11124689887531
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ...+.+..+.|+++|.++..+
T Consensus 220 g--------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 220 G--------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred C--------HHHHHHHHHhhccCCEEEEEc
Confidence 1 245788999999999998754
No 330
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=52.20 E-value=1.1e+02 Score=28.51 Aligned_cols=86 Identities=22% Similarity=0.185 Sum_probs=47.7
Q ss_pred eEEEECCcC-chHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccc
Q 036725 208 TALDTGCGV-ASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~ 282 (392)
+||=.|+|. |..+..+++. . +++++. +....+.+++.|....... ..... ...+.+|+|+....
T Consensus 100 ~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~-----~~~~~~~~~~~g~~~~~~~-~~~~~-~~~~~~d~vl~~~~---- 168 (277)
T cd08255 100 RVAVVGLGLVGLLAAQLAKAAGAREVVGVDP-----DAARRELAEALGPADPVAA-DTADE-IGGRGADVVIEASG---- 168 (277)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEECC-----CHHHHHHHHHcCCCccccc-cchhh-hcCCCCCEEEEccC----
Confidence 677778753 4555555554 3 555533 3334556666661111111 11111 13456899985311
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEc
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.+..+.|+++|.++..+
T Consensus 169 ---~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ---SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ---ChHHHHHHHHHhcCCcEEEEEe
Confidence 1235788899999999998765
No 331
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=52.17 E-value=32 Score=33.92 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=60.1
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHH-cCCCcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALE-RGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~-rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
+|.=||.| .|..++.++-. +|+.+|++.. .++.... .+.. +.....+. .+--.-...|+|+.. ++++
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~-----rl~~ldd~f~~r-v~~~~st~~~iee~v~~aDlvIga-VLIp 242 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNID-----RLRQLDDLFGGR-VHTLYSTPSNIEEAVKKADLVIGA-VLIP 242 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecCHH-----HHhhhhHhhCce-eEEEEcCHHHHHHHhhhccEEEEE-EEec
Confidence 57778888 47888888765 8888877542 2322222 2222 22233332 332223568999876 7778
Q ss_pred cccChHHHHHHHHHhccCCeEEEE
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl 305 (392)
-...+..+.+|+...+|||..++=
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEE
Confidence 777888999999999999998875
No 332
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=51.46 E-value=66 Score=32.94 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=56.4
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcC-chHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGV-ASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP 266 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~-G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~ 266 (392)
..+.+.+..... -..++|+=+|+|. |...+.+++. +|+++|.++. ....|.+.|...+ ... ..+
T Consensus 188 ~~~~i~r~t~~~-l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~-----R~~~A~~~G~~~~--~~~-e~v--- 255 (413)
T cd00401 188 LIDGIKRATDVM-IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI-----CALQAAMEGYEVM--TME-EAV--- 255 (413)
T ss_pred hHHHHHHhcCCC-CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh-----hHHHHHhcCCEEc--cHH-HHH---
Confidence 445555554421 1234899999995 6555555543 6777766432 3445666664221 111 111
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..+|+|+..-. ....+-.+..+.+|+||+++..+.
T Consensus 256 -~~aDVVI~atG------~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 256 -KEGDIFVTTTG------NKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred -cCCCEEEECCC------CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 34799986421 222223445889999999998863
No 333
>PLN02740 Alcohol dehydrogenase-like
Probab=50.81 E-value=94 Score=30.87 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=49.4
Q ss_pred eEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc---c--cC-CCCCCccceEEec
Q 036725 208 TALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT---I--KL-PYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~---~--~l-p~~d~sFDlV~~~ 276 (392)
+||=+|+| .|..+..+++. .|+++|. +....+.+++.|...++-.... . .+ ....+.+|+|+-.
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARGASKIIGVDI-----NPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcEEEEcC-----ChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 78888875 34555555554 3556644 3346677777775433221110 0 00 0112268999853
Q ss_pred ccccccccChHHHHHHHHHhccCC-eEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPG-GYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPG-G~lvl~~ 307 (392)
-. ....+.+..+.+++| |.+++.+
T Consensus 276 ~G-------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 276 AG-------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CC-------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 21 124577888889997 9888765
No 334
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=50.57 E-value=65 Score=31.50 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=48.4
Q ss_pred ceEEEECCc-CchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccc
Q 036725 207 RTALDTGCG-VASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG-~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~ 280 (392)
.+||=+|+| .|.++..++++ +++++|.+ +...+.+++.+. .. .... +. .+..+|+|+-.-.-
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~-----~~k~~~a~~~~~--~~-~~~~--~~-~~~g~d~viD~~G~- 232 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKH-----QEKLDLFSFADE--TY-LIDD--IP-EDLAVDHAFECVGG- 232 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCc-----HhHHHHHhhcCc--ee-ehhh--hh-hccCCcEEEECCCC-
Confidence 388989986 35555554442 47777653 334455554332 11 1111 11 11248988853210
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. .....+.+..++||+||.+++.+
T Consensus 233 ~---~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 233 R---GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred C---ccHHHHHHHHHhCcCCcEEEEEe
Confidence 0 12356888999999999999865
No 335
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=49.82 E-value=99 Score=29.77 Aligned_cols=88 Identities=25% Similarity=0.257 Sum_probs=49.5
Q ss_pred eEEEECCcC-chHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec-c--ccC--CCCCCccceEEeccc
Q 036725 208 TALDTGCGV-ASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG-T--IKL--PYPSRAFDMAHCSRC 278 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~--~~l--p~~d~sFDlV~~~~~ 278 (392)
+||-.|+|. |..+..+++. +++++.- +....+..++.+...++.... . ..+ -.+...+|+|+....
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~-----s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g 236 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARGARVIVVDI-----DDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG 236 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEECC-----CHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC
Confidence 788888763 6666677765 4444422 233444555555332221111 1 001 123456899986421
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.++.+.|+++|.++..+
T Consensus 237 -------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 237 -------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred -------CHHHHHHHHHHHhcCCEEEEEc
Confidence 1245788999999999998754
No 336
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.68 E-value=68 Score=31.79 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=55.7
Q ss_pred eEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC---------CCCCCccceE
Q 036725 208 TALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL---------PYPSRAFDMA 273 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l---------p~~d~sFDlV 273 (392)
+||=+|+|. |..+...++. +|+.+|+ .+..++.|++-|...+......... -+....+|+.
T Consensus 172 ~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~-----~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 172 KVLVLGAGPIGLLTGLVAKAMGASDVVITDL-----VANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCCcEEEeec-----CHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 899999995 4444444443 7888755 4457888888776554433331100 1223458888
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 274 HCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 274 ~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+....+ +..++.....||.||.+++.+
T Consensus 247 ~dCsG~-------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 247 FDCSGA-------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred EEccCc-------hHHHHHHHHHhccCCEEEEec
Confidence 754333 234566788899999988875
No 337
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=49.67 E-value=51 Score=26.23 Aligned_cols=77 Identities=17% Similarity=0.087 Sum_probs=44.7
Q ss_pred ECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccccChHHHHH
Q 036725 212 TGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMM 291 (392)
Q Consensus 212 iGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ 291 (392)
+-||+|.-+..+++ ...+.+.++|++......+.....-....+|+|++.. .....+.
T Consensus 4 ~~Cg~G~sTS~~~~---------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~P-------qv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVK---------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGP-------QVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHH---------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEECh-------hHHHHHH
Confidence 45777765554433 3556777888775443333333332245689998752 3344567
Q ss_pred HHHHhccCCeEEEEEcCCC
Q 036725 292 EIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 292 ei~RvLkPGG~lvl~~p~~ 310 (392)
++.+.+.+.+.=+...++.
T Consensus 62 ~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 62 EVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHhccCCCcEEEcChH
Confidence 7777666666656655554
No 338
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=48.97 E-value=55 Score=31.48 Aligned_cols=80 Identities=25% Similarity=0.191 Sum_probs=45.6
Q ss_pred eEEEECCc-CchHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~ 282 (392)
++|=+|+| .|.++..+++. + +.++|. .....+.+..... .+.... ....+|+|+-.-.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~-----~~~rl~~a~~~~~------i~~~~~--~~~g~Dvvid~~G---- 209 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWET-----NPRRRDGATGYEV------LDPEKD--PRRDYRAIYDASG---- 209 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCC-----CHHHHHhhhhccc------cChhhc--cCCCCCEEEECCC----
Confidence 67777876 56777777765 3 334433 2223333432211 111110 2346899885421
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEc
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.++.+.|+++|.+++.+
T Consensus 210 ---~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 ---DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ---CHHHHHHHHHhhhcCcEEEEEe
Confidence 1235788899999999999865
No 339
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=48.90 E-value=1e+02 Score=28.36 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=55.4
Q ss_pred eEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCC-------CCCccce
Q 036725 208 TALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPY-------PSRAFDM 272 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~-------~d~sFDl 272 (392)
.|+++|.-.|..+...+.- +|+++|++-.....+.++ .+.+.++.++...|- -.+.+--
T Consensus 72 lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~~~y~k 145 (237)
T COG3510 72 LVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLKNEYPK 145 (237)
T ss_pred eeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 8999998888666555542 788898865544443332 466677766653331 0111222
Q ss_pred EE-ecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 273 AH-CSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 273 V~-~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|+ |...- |-.+..-+.|+-..++|.-|-|+++..
T Consensus 146 IfvilDsd-Hs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 146 IFVILDSD-HSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEEEecCC-chHHHHHHHHHHhhhHhhcCceEEEec
Confidence 32 32222 333234566777788999999999965
No 340
>PLN02827 Alcohol dehydrogenase-like
Probab=47.07 E-value=78 Score=31.53 Aligned_cols=88 Identities=19% Similarity=0.107 Sum_probs=48.6
Q ss_pred eEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec---cc-c-C-CCCCCccceEEec
Q 036725 208 TALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG---TI-K-L-PYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~---~~-~-l-p~~d~sFDlV~~~ 276 (392)
+||=+|+| .|.++..+++. .+++++. +....+++++.|...++-... +. . + ....+.+|+|+-.
T Consensus 196 ~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~-----~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 196 SVVIFGLGTVGLSVAQGAKLRGASQIIGVDI-----NPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEECC-----CHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence 78888865 34455555553 2445543 334566777777643321111 00 0 0 0112258988753
Q ss_pred ccccccccChHHHHHHHHHhccCC-eEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPG-GYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPG-G~lvl~~ 307 (392)
-. ....+.+..+.||+| |.+++.+
T Consensus 271 ~G-------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 271 VG-------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CC-------ChHHHHHHHHhhccCCCEEEEEC
Confidence 21 123567888899999 9998765
No 341
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=46.37 E-value=47 Score=33.59 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=22.9
Q ss_pred cceEEEECCcCchHHHHHhhC---CcEEEeCC
Q 036725 206 VRTALDTGCGVASWGAYLFKK---NVITMSFA 234 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s 234 (392)
...|+|+|.|.|+++..|.-. .|.++|-+
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 348999999999999998765 56666554
No 342
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=45.72 E-value=1.4e+02 Score=29.08 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=48.1
Q ss_pred ceEEEECCcC-chHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cC------CCCCCccc---
Q 036725 207 RTALDTGCGV-ASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KL------PYPSRAFD--- 271 (392)
Q Consensus 207 ~~VLDiGCG~-G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~l------p~~d~sFD--- 271 (392)
.+||=+|+|. |..+..+++. .+++++. +....+++++.|...++...... .+ -.....+|
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~-----~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~ 242 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMGAAVVAIDI-----DPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcC-----CHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCc
Confidence 3899999853 5555666654 4555543 33456677777753322111100 00 00112344
Q ss_pred -eEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 272 -MAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 272 -lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.|+-.- -....+....++|++||.+++.+
T Consensus 243 d~v~d~~-------g~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 243 WKIFECS-------GSKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CEEEECC-------CChHHHHHHHHHHhcCCeEEEEC
Confidence 454211 11245677888999999999875
No 343
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=44.62 E-value=16 Score=29.33 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhhcCCC
Q 036725 21 VVGLCCFFYILGAWQRSGF 39 (392)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~ 39 (392)
+++||+++|++|.++.+..
T Consensus 5 ~l~Lc~~SF~~G~lft~R~ 23 (95)
T PF13334_consen 5 VLLLCIASFCAGMLFTNRM 23 (95)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 5778888888888887543
No 344
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=44.60 E-value=51 Score=32.61 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=26.3
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCc
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAP 235 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~ 235 (392)
++++.|+..-...++..++.+|||.|+--+-..+..+ .+.++++..
T Consensus 87 hwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd 136 (419)
T KOG2912|consen 87 HWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDD 136 (419)
T ss_pred HHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccc
Confidence 3455555444434455556799998887554444433 556666644
No 345
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=44.36 E-value=1.5e+02 Score=28.59 Aligned_cols=87 Identities=15% Similarity=0.123 Sum_probs=50.0
Q ss_pred eEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHH-cCCCcEEEEec--cc--cC-CCCCCccceEEec
Q 036725 208 TALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALE-RGVPAVIGVLG--TI--KL-PYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~-rg~~~~~~~~~--~~--~l-p~~d~sFDlV~~~ 276 (392)
+||=.|+ |.|.++..+++. ++++++- +....+.+++ .|...++.... +. .+ ....+.+|+|+-.
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~-----~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKGCYVVGSAG-----SDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcCCEEEEEeC-----CHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 7888885 567777777775 3444422 2334555555 56533321111 11 00 0112568998753
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. ...+.+..+.|+++|.++..+
T Consensus 229 ~g--------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 VG--------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CC--------HHHHHHHHHHhccCcEEEEec
Confidence 11 245788999999999999754
No 346
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=44.26 E-value=36 Score=32.58 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=35.9
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC--CCccceEEec
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP--SRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~--d~sFDlV~~~ 276 (392)
+++|+-||.|.+...+.+. .+.++|+++ ..++..+.+. +... ..++. .+... ...+|+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~-----~a~~~~~~N~-~~~~-~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDK-----SAAETYEANF-PNKL-IEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCH-----HHHHHHHHhC-CCCC-ccCccccCchhhcCCCCCEEEeC
Confidence 6899999999998888776 345566543 3333333332 2222 22232 33211 3469999965
No 347
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=43.61 E-value=1.7e+02 Score=28.32 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=47.5
Q ss_pred eEEEECCcC-chHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEec-c-------ccCCCCCCccceEE
Q 036725 208 TALDTGCGV-ASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLG-T-------IKLPYPSRAFDMAH 274 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~-------~~lp~~d~sFDlV~ 274 (392)
+||=.|+|. |..+..+++. . +++++- ++...+++++.+...++.... . ..-......+|+|+
T Consensus 165 ~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~-----~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vl 239 (343)
T cd05285 165 TVLVFGAGPIGLLTAAVAKAFGATKVVVTDI-----DPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVI 239 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECC-----CHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEE
Confidence 666677653 5566666665 3 444422 223344555555433221111 0 00012345699998
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-... ....+.+..+.|+++|.++..+
T Consensus 240 d~~g-------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 240 ECTG-------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred ECCC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 5321 1235788899999999998764
No 348
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=43.57 E-value=1.7e+02 Score=27.87 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=46.1
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+||=.|+| .|..+..+++. ++++++. +....+++++.|....... .. ....+.+|+|+...
T Consensus 158 ~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~-----~~~~~~~~~~~g~~~~~~~---~~-~~~~~~~d~vid~~------ 222 (319)
T cd08242 158 KVAVLGDGKLGLLIAQVLALTGPDVVLVGR-----HSEKLALARRLGVETVLPD---EA-ESEGGGFDVVVEAT------ 222 (319)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEcC-----CHHHHHHHHHcCCcEEeCc---cc-cccCCCCCEEEECC------
Confidence 67777753 23333334443 4444432 2345566666664332211 11 12345699998531
Q ss_pred cChHHHHHHHHHhccCCeEEEEEc
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.....+..+.+.|+++|.++..+
T Consensus 223 -g~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 -GSPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred -CChHHHHHHHHHhhcCCEEEEEc
Confidence 11335678888999999998743
No 349
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=43.29 E-value=1.4e+02 Score=28.89 Aligned_cols=88 Identities=13% Similarity=0.107 Sum_probs=47.0
Q ss_pred eEEEECCc-CchHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEecc----ccCCCCCCccc-eEEecc
Q 036725 208 TALDTGCG-VASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLGT----IKLPYPSRAFD-MAHCSR 277 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~----~~lp~~d~sFD-lV~~~~ 277 (392)
+||=.|+| .|.++..+++. + +++++. ++...+.+++.|...++-.... ..--.....+| +|+-.
T Consensus 163 ~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~-----~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~- 236 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCAVALGAKSVTAIDI-----NSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILET- 236 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEECC-----CHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEEC-
Confidence 77777875 34455555554 3 445533 3345556666664322111110 00001234577 55532
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. -....+.+..+.|++||.+++.+
T Consensus 237 -~-----G~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 237 -A-----GVPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred -C-----CCHHHHHHHHHHhhcCCEEEEEc
Confidence 1 11346788899999999999875
No 350
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=41.70 E-value=1.6e+02 Score=28.43 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=49.2
Q ss_pred ceEEEECC--cCchHHHHHhhC-C---cEEEeCCccChHHHHHHHHHH-cCCCcEEEEeccccC-----CCCCCccceEE
Q 036725 207 RTALDTGC--GVASWGAYLFKK-N---VITMSFAPRDSHEAQVQFALE-RGVPAVIGVLGTIKL-----PYPSRAFDMAH 274 (392)
Q Consensus 207 ~~VLDiGC--G~G~~~~~L~~~-~---v~~vd~s~~d~~~a~~~~a~~-rg~~~~~~~~~~~~l-----p~~d~sFDlV~ 274 (392)
.+||=.|+ |.|.++..+++. + +++++- ++...+.+++ .|...++.. ....+ ....+.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~-----s~~~~~~~~~~lGa~~vi~~-~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG-----SDEKCQLLKSELGFDAAINY-KTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC-----CHHHHHHHHHhcCCcEEEEC-CCCCHHHHHHHHCCCCceEEE
Confidence 37887775 577787777765 2 444432 2334445544 565333221 11110 01125699998
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.... . ..+.+..+.|+++|.++..+
T Consensus 230 d~~g------~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 DNVG------G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred ECCC------c--HHHHHHHHHhccCCEEEEEe
Confidence 5321 1 23578889999999999754
No 351
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=41.35 E-value=71 Score=26.01 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=49.3
Q ss_pred eEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCC--CCCccceEEecccccccccC
Q 036725 208 TALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPY--PSRAFDMAHCSRCLIPWSAN 285 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~--~d~sFDlV~~~~~l~~~~~d 285 (392)
+|| +-||.|..+..+++ .+.+.++++|++......+...++- ....+|+|++.. .
T Consensus 3 kIL-lvCg~G~STSlla~---------------k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P-------Q 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAK---------------KTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP-------Q 59 (104)
T ss_pred EEE-EECCCchHHHHHHH---------------HHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh-------H
Confidence 455 66888876654443 3456778888875543333333331 234689998652 3
Q ss_pred hHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 286 DGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 286 ~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
....+.++...+.+.|.-+...++..
T Consensus 60 i~~~~~~i~~~~~~~~ipv~~I~~~~ 85 (104)
T PRK09590 60 TKMYFKQFEEAGAKVGKPVVQIPPQA 85 (104)
T ss_pred HHHHHHHHHHHhhhcCCCEEEeCHHH
Confidence 34557888888877777666655543
No 352
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=41.20 E-value=1.8e+02 Score=27.99 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=47.4
Q ss_pred eEEEECCcC-chHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEecc--cc-CC-CCCCccceEEeccc
Q 036725 208 TALDTGCGV-ASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLGT--IK-LP-YPSRAFDMAHCSRC 278 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~--~~-lp-~~d~sFDlV~~~~~ 278 (392)
+||-.|+|. |..+..+++. + +++++-+ ....+...+.+...+...... .. .. .+...+|+|+...
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~-----~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~- 235 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKILGAKRVIAVDID-----DEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAA- 235 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-----HHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECC-
Confidence 788888654 5555556654 3 4444322 234445555554222111100 00 01 1234589998541
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.....+.++.+.|+++|.++..+
T Consensus 236 ------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 ------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 12346788899999999998865
No 353
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=40.61 E-value=2.1e+02 Score=28.74 Aligned_cols=94 Identities=20% Similarity=0.144 Sum_probs=50.3
Q ss_pred eEEEECCc-CchHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEec--cc--cC--CCCCCccceEEec
Q 036725 208 TALDTGCG-VASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLG--TI--KL--PYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~--~~--~l--p~~d~sFDlV~~~ 276 (392)
+||=.|+| .|..+..+++. . ++++ +.+....+.+++.|... +.... +. .+ -.....+|+|+-.
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~-----d~~~~r~~~a~~~Ga~~-v~~~~~~~~~~~v~~~~~~~g~Dvvid~ 261 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLGAAVVIVG-----DLNPARLAQARSFGCET-VDLSKDATLPEQIEQILGEPEVDCAVDC 261 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-----CCCHHHHHHHHHcCCeE-EecCCcccHHHHHHHHcCCCCCcEEEEC
Confidence 55557775 34555555554 2 3333 23345667788877632 11111 10 01 0123468999853
Q ss_pred ccccc-------cccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIP-------WSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~-------~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-.... ...+....+.+..+++|+||.+++.+
T Consensus 262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 262 VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 22100 01112357899999999999999965
No 354
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=40.61 E-value=47 Score=31.04 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh---C---CcEEEeCCccChH
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK---K---NVITMSFAPRDSH 239 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~---~---~v~~vd~s~~d~~ 239 (392)
.++.++-...+.. +..-++.|-.||.|++..-+.- . +|.+.|+++..+.
T Consensus 37 sEi~qR~l~~l~~--~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~ 91 (246)
T PF11599_consen 37 SEIFQRALHYLEG--KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALE 91 (246)
T ss_dssp HHHHHHHHCTSSS---S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHH
T ss_pred HHHHHHHHHhhcC--CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHH
Confidence 3444555555543 3345899999999987765432 2 7888877654333
No 355
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=40.61 E-value=1.9e+02 Score=27.59 Aligned_cols=83 Identities=22% Similarity=0.206 Sum_probs=44.8
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+||=.|+| .|..+..+++. ++++++-+ ....+.+++.|....+ ..... +++.+|+++...
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~-----~~~~~~~~~~g~~~~~---~~~~~--~~~~vD~vi~~~------ 233 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQGAEVFAFTRS-----GEHQELARELGADWAG---DSDDL--PPEPLDAAIIFA------ 233 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEcCC-----hHHHHHHHHhCCcEEe---ccCcc--CCCcccEEEEcC------
Confidence 55556654 23333444443 44444322 2345566666642211 11111 345688886421
Q ss_pred cChHHHHHHHHHhccCCeEEEEEc
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.....+.++.+.|+++|.++..+
T Consensus 234 -~~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 234 -PVGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -CcHHHHHHHHHHhhcCCEEEEEc
Confidence 11246899999999999999865
No 356
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=39.64 E-value=36 Score=28.64 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=25.5
Q ss_pred CccceEEecccccccc-cCh--HHHHHHHHHhccCCeEEEEE
Q 036725 268 RAFDMAHCSRCLIPWS-AND--GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~-~d~--~~~L~ei~RvLkPGG~lvl~ 306 (392)
..||+|+... +.+-. ++. ..+++++.|+++|||.+.-.
T Consensus 49 ~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty 89 (124)
T PF05430_consen 49 ARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATY 89 (124)
T ss_dssp T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred ccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence 5789998653 22222 122 58999999999999988773
No 357
>PTZ00357 methyltransferase; Provisional
Probab=39.15 E-value=1.1e+02 Score=33.65 Aligned_cols=94 Identities=10% Similarity=0.075 Sum_probs=53.4
Q ss_pred eEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCC--------CcEEEEeccc-cCCCC----
Q 036725 208 TALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGV--------PAVIGVLGTI-KLPYP---- 266 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~--------~~~~~~~~~~-~lp~~---- 266 (392)
.|+=+|+|-|-+....++. +|++++-++........+......- ..+.++..+. .+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999776655543 5677776543222222222111111 1245555554 33222
Q ss_pred -------CCccceEEecccccccccCh--HHHHHHHHHhccC----CeE
Q 036725 267 -------SRAFDMAHCSRCLIPWSAND--GMYMMEIDRVLRP----GGY 302 (392)
Q Consensus 267 -------d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkP----GG~ 302 (392)
-+.+|+|++- .|-.+.++. ...|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 2479999974 233444333 4788888888887 776
No 358
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=38.89 E-value=1.7e+02 Score=29.80 Aligned_cols=123 Identities=11% Similarity=0.136 Sum_probs=65.9
Q ss_pred CCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCc--cChHHHHHHHHHH----cC--C
Q 036725 184 FPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAP--RDSHEAQVQFALE----RG--V 251 (392)
Q Consensus 184 f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~--~d~~~a~~~~a~~----rg--~ 251 (392)
|.......+..+.+.+...+++ ...|+|.|.|.....++.. .-.|+++.. .+..+.+.+.-++ .| .
T Consensus 173 YGE~~~~ql~si~dEl~~g~~D--~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 173 YGETQLEQLRSIVDELKLGPAD--VFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred hhhhhHHHHHHHHHHhccCCCC--cccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 3333344555555666655555 7899999999776666543 334444432 1222222222221 12 2
Q ss_pred CcEEEEeccccCC----CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 252 PAVIGVLGTIKLP----YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 252 ~~~~~~~~~~~lp----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..+..+.++.-.| .=....++|+.+.+. +.+++..-+.++..-+++|-.++-+.|-.
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVA--FDPELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEeccc--CCHHHHHhhHHHHhhCCCcceEecccccc
Confidence 2233333333222 013456788887665 44455555668888899888887754433
No 359
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=38.86 E-value=3.5e+02 Score=25.66 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=58.1
Q ss_pred ceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCC---CcEEEEecccc------C---CCCCCccceE
Q 036725 207 RTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGV---PAVIGVLGTIK------L---PYPSRAFDMA 273 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~---~~~~~~~~~~~------l---p~~d~sFDlV 273 (392)
+.|+.+|||-=+-...|... ++..++++-.++-+...+...+.+. .....+..+.. | .|..+.-=++
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~ 162 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAW 162 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeee
Confidence 47999999998888777644 5777777544444434444443221 23333333322 1 1212222244
Q ss_pred EecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 274 HCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 274 ~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++-.++..+.++. ..+|..+.+...||+.+++..
T Consensus 163 i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 163 LWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred eecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4444443333222 578999998888999999964
No 360
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=38.09 E-value=1.4e+02 Score=28.65 Aligned_cols=87 Identities=22% Similarity=0.231 Sum_probs=46.7
Q ss_pred eEEEECCc-CchHHHHHhhC-C---cEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-c-----cCCCCCCccceEEec
Q 036725 208 TALDTGCG-VASWGAYLFKK-N---VITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-I-----KLPYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~-~---v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~-----~lp~~d~sFDlV~~~ 276 (392)
+||-.|+| .|..+..+++. + +++++- +....+.+++.+...++..... . ++ .+.+.+|+|+..
T Consensus 170 ~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~-----~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~vld~ 243 (347)
T cd05278 170 TVAVIGAGPVGLCAVAGARLLGAARIIAVDS-----NPERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCVIEA 243 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEeC-----CHHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEEEEc
Confidence 77777764 35555556554 2 344422 2233445555553222111111 0 11 133579999853
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. ....+.+..+.|+++|.++..+
T Consensus 244 ~g-------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 244 VG-------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 11 1246888899999999998754
No 361
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=37.95 E-value=1.7e+02 Score=28.84 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=47.5
Q ss_pred eEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-c----cC-CCCCCccceEEec
Q 036725 208 TALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-I----KL-PYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~----~l-p~~d~sFDlV~~~ 276 (392)
+||=+|+| .|.++..+++. .|++++. +....+++++.|...++-.... . .+ ....+.+|+|+-.
T Consensus 187 ~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~-----~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~ 261 (365)
T cd08277 187 TVAVFGLGAVGLSAIMGAKIAGASRIIGVDI-----NEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFEC 261 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEEC
Confidence 77777864 34455555554 3555543 3345566666665332211110 0 00 0112468999853
Q ss_pred ccccccccChHHHHHHHHHhccCC-eEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPG-GYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPG-G~lvl~~ 307 (392)
.. ....+.+..+.|+++ |.+++.+
T Consensus 262 ~g-------~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 262 TG-------NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CC-------ChHHHHHHHHhcccCCCEEEEEc
Confidence 11 124578888999886 9998865
No 362
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=37.95 E-value=38 Score=24.73 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 036725 17 SLFIVVGLCCFFYILGAW 34 (392)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (392)
.+++++++|.++..||++
T Consensus 38 ~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 38 IVFAVVALCVLSGGLGAL 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566889999999975
No 363
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=37.60 E-value=1.6e+02 Score=29.06 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=49.4
Q ss_pred eEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec-ccc----C-CCCCCccceEEec
Q 036725 208 TALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG-TIK----L-PYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~~~----l-p~~d~sFDlV~~~ 276 (392)
+||=+|+| .|.++..+++. +|++++. +....+.+++.|...++-... ... + ....+.+|+|+-.
T Consensus 188 ~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~-----~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 262 (368)
T TIGR02818 188 TVAVFGLGGIGLSVIQGARMAKASRIIAIDI-----NPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFEC 262 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC-----CHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 78888875 35565666654 3555543 344666777777543321111 000 0 0112358888753
Q ss_pred ccccccccChHHHHHHHHHhccCC-eEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPG-GYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPG-G~lvl~~ 307 (392)
-. ....+.+..+.|++| |.+++.+
T Consensus 263 ~G-------~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 263 IG-------NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CC-------CHHHHHHHHHHhhcCCCeEEEEe
Confidence 11 124577888999986 9988765
No 364
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=37.59 E-value=2.4e+02 Score=29.52 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCCC--cEEE-E
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGVP--AVIG-V 257 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~-~ 257 (392)
...++.+.+++.........+.|.-||+|.+.....+. .+++-+..+.+..-+...... ++.. .... .
T Consensus 201 ~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l-~~~~~~t~~~~~ 279 (501)
T TIGR00497 201 QDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMIL-HNIDYANFNIIN 279 (501)
T ss_pred HHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHH-cCCCccccCccc
Confidence 34555555555432222237999999999988653321 345555444322222221111 2221 1111 1
Q ss_pred eccccC-CC-CCCccceEEeccccc-cc-----------------------ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 258 LGTIKL-PY-PSRAFDMAHCSRCLI-PW-----------------------SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 258 ~~~~~l-p~-~d~sFDlV~~~~~l~-~~-----------------------~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.++..- .+ ....||.|+++.-+. .| ......++..+..+|++||...+..|..
T Consensus 280 ~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 280 ADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred CCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 122221 12 245688887653110 01 1112367888899999999877765433
No 365
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=36.46 E-value=42 Score=23.20 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHHHHHhhh
Q 036725 14 GSMSLFIVVGLCCFFYILGA 33 (392)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ 33 (392)
|.+.+++++..|.|+|.+..
T Consensus 5 rwiili~iv~~Cl~lyl~al 24 (47)
T PRK10299 5 RWVVLVVVVLACLLLWAQVF 24 (47)
T ss_pred eehHHHHHHHHHHHHHHHHH
Confidence 33444555666888877654
No 366
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=36.41 E-value=1.4e+02 Score=30.89 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=27.7
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV 251 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~ 251 (392)
-|||||.|||.++...... .+++++.-..|.. .++....+.|-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d-~arkI~~kng~ 114 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVD-LARKIMHKNGM 114 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHH-HHHHHHhcCCC
Confidence 6999999999887766555 6788766543332 23334444553
No 367
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=36.39 E-value=1.9e+02 Score=28.28 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=57.0
Q ss_pred ceEEEECCcCc-hHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC---CccceEEeccccc
Q 036725 207 RTALDTGCGVA-SWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS---RAFDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G-~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d---~sFDlV~~~~~l~ 280 (392)
+.|+=+|=-.= +++..|... +|.++|++..-+. --.++|.+.|+.++....-+.+-|+|+ +.||+.+....
T Consensus 154 K~I~vvGDDDLtsia~aLt~mpk~iaVvDIDERli~-fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp-- 230 (354)
T COG1568 154 KEIFVVGDDDLTSIALALTGMPKRIAVVDIDERLIK-FIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP-- 230 (354)
T ss_pred CeEEEEcCchhhHHHHHhcCCCceEEEEechHHHHH-HHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch--
Confidence 47888882211 233333333 7888988654332 234567778887655555555667663 78999876421
Q ss_pred ccccChHHHHHHHHHhccCC---eEEEEEc
Q 036725 281 PWSANDGMYMMEIDRVLRPG---GYWVLSG 307 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPG---G~lvl~~ 307 (392)
.-......++..=...||-- |||-++.
T Consensus 231 eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 231 ETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred hhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 01112245555555667665 8998874
No 368
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=35.54 E-value=1.1e+02 Score=30.57 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=47.6
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+||=.|+| .|.++..+++. .+++++.+. +...+.+++.|...++.......+.-..+.+|+|+-.-
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~----~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~------ 250 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS----EKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTV------ 250 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh----HHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECC------
Confidence 77778875 35555666654 455554432 22244556666533221111110000012488887531
Q ss_pred cChHHHHHHHHHhccCCeEEEEEc
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-....+.+..+.|++||.++..+
T Consensus 251 -G~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 251 -SAEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred -CcHHHHHHHHHhhcCCCEEEEEc
Confidence 11235778889999999999865
No 369
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=35.48 E-value=1.8e+02 Score=28.16 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=48.7
Q ss_pred eEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-c-----cCCCCCCccceEEec
Q 036725 208 TALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-I-----KLPYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~-----~lp~~d~sFDlV~~~ 276 (392)
+||=.|+| .|..+..+++. .+++++. .....+.+++.|...++-.... . .+ .....+|+|+..
T Consensus 169 ~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~-----~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~ 242 (351)
T cd08285 169 TVAVFGIGPVGLMAVAGARLRGAGRIIAVGS-----RPNRVELAKEYGATDIVDYKNGDVVEQILKL-TGGKGVDAVIIA 242 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHHHHcCCceEecCCCCCHHHHHHHH-hCCCCCcEEEEC
Confidence 77777765 34555556654 2455543 2334556666665332211110 0 11 123468999853
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. ....+.++.+.|+++|.++..+
T Consensus 243 ~g-------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 243 GG-------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEEEec
Confidence 21 1246789999999999998754
No 370
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=34.80 E-value=2.5e+02 Score=27.88 Aligned_cols=91 Identities=19% Similarity=0.107 Sum_probs=52.1
Q ss_pred eEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccccCh-
Q 036725 208 TALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSAND- 286 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~- 286 (392)
.||=+|--...+...|....+.+... ..+..+. .....+....+.. ....+. ...||+|+.. |+...
T Consensus 22 ~~l~~~~~~d~~~~~l~~~~~~~~~~---~~~~~~~-~~~~~~~~~~f~~--~~~~~~-~~~~d~~~~~-----~pk~k~ 89 (342)
T PRK09489 22 RVLFAGDLQDDLPAQLDAASVRVHTQ---QFHHWQV-LSRQMGDNARFSL--VATAED-VADCDTLIYY-----WPKNKQ 89 (342)
T ss_pred cEEEEcCcchhhHHhhhccceEEehh---hhHHHHH-HHhhcCCceEecc--ccCCcc-CCCCCEEEEE-----CCCCHH
Confidence 68888888888887776444443322 2222211 2222232222211 112222 3579999753 44333
Q ss_pred --HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 287 --GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 287 --~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
...|.++.+.|+|||.+++++...
T Consensus 90 ~~~~~l~~~~~~l~~g~~i~~~G~~~ 115 (342)
T PRK09489 90 EAQFQLMNLLSLLPVGTDIFVVGENR 115 (342)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEecc
Confidence 578899999999999999987444
No 371
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=34.37 E-value=1.3e+02 Score=32.90 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=34.3
Q ss_pred CCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC
Q 036725 182 TQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK 226 (392)
Q Consensus 182 ~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~ 226 (392)
.|...|++..++.|+..+..... -.|-.|=|+|..++.|++.
T Consensus 302 ~Q~ATGAHYKlRsIL~~~~i~~~---d~l~~GDGSGGita~lLR~ 343 (675)
T PF14314_consen 302 FQLATGAHYKLRSILKNLNIKYR---DALCGGDGSGGITACLLRM 343 (675)
T ss_pred hcccccchhhHHHHHHhcCCCcc---eeEEEecCchHHHHHHHHh
Confidence 46677888889999988876554 5899999999999999875
No 372
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=32.62 E-value=2.6e+02 Score=27.42 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=48.8
Q ss_pred eEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc---c-c-C-CCCCCccceEEec
Q 036725 208 TALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT---I-K-L-PYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~---~-~-l-p~~d~sFDlV~~~ 276 (392)
+||=+|+| .|.++..+++. .+++++. +....+.+++.|...++-.... . . + ....+.+|+|+-.
T Consensus 189 ~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~-----~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 263 (368)
T cd08300 189 TVAVFGLGAVGLAVIQGAKAAGASRIIGIDI-----NPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFEC 263 (368)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEEC
Confidence 77777864 34555555554 3556644 3345566776665433211110 0 0 0 0112368998853
Q ss_pred ccccccccChHHHHHHHHHhccCC-eEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPG-GYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPG-G~lvl~~ 307 (392)
-. ....+.+..+.|+++ |.++..+
T Consensus 264 ~g-------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 264 IG-------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CC-------ChHHHHHHHHhhccCCCeEEEEc
Confidence 11 124678888999997 9998764
No 373
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=32.57 E-value=3.1e+02 Score=26.57 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=47.0
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc-CCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-LPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~-lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
...|+|.-.|.|+-.|.++ .|+++|-.+ +.+....-|. ......+..+ -| .....|-.+|..+ +
T Consensus 214 ~avDLGAcPGGWTyqLVkr~m~V~aVDng~------ma~sL~dtg~-v~h~r~DGfk~~P-~r~~idWmVCDmV-----E 280 (358)
T COG2933 214 WAVDLGACPGGWTYQLVKRNMRVYAVDNGP------MAQSLMDTGQ-VTHLREDGFKFRP-TRSNIDWMVCDMV-----E 280 (358)
T ss_pred eeeecccCCCccchhhhhcceEEEEeccch------hhhhhhcccc-eeeeeccCccccc-CCCCCceEEeehh-----c
Confidence 7899999999999999998 677777543 2222222231 1222222232 23 3567899999743 2
Q ss_pred ChHHHHHHHHHhccC
Q 036725 285 NDGMYMMEIDRVLRP 299 (392)
Q Consensus 285 d~~~~L~ei~RvLkP 299 (392)
.+..+-.-|...|..
T Consensus 281 kP~rv~~li~~Wl~n 295 (358)
T COG2933 281 KPARVAALIAKWLVN 295 (358)
T ss_pred CcHHHHHHHHHHHHc
Confidence 444555555555553
No 374
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=31.78 E-value=2.7e+02 Score=26.06 Aligned_cols=86 Identities=26% Similarity=0.232 Sum_probs=50.0
Q ss_pred eEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cC-CCCCCccceEEecccc
Q 036725 208 TALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KL-PYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~l-p~~d~sFDlV~~~~~l 279 (392)
+||=.|+ +.|..+..+++. .++++..+ +...+.+.+.|...++....+. .+ .+ .+.+|+|+....
T Consensus 145 ~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~~- 217 (320)
T cd08243 145 TLLIRGGTSSVGLAALKLAKALGATVTATTRS-----PERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLELVG- 217 (320)
T ss_pred EEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEECCC-
Confidence 7777775 456677677765 44444332 2344566666653332211110 00 12 456999985321
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+.++.+.|+++|.++..+
T Consensus 218 -------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 218 -------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred -------hHHHHHHHHHhccCCEEEEEc
Confidence 235788899999999998865
No 375
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=31.39 E-value=1.5e+02 Score=28.51 Aligned_cols=87 Identities=22% Similarity=0.164 Sum_probs=49.1
Q ss_pred eEEEECCc--CchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCG--VASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG--~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+|+=+|.| -|+++..|.++ .+..++. |.+.+..+.+.+.|+...... +. .--.....|+|+.+- +..
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~---d~~~~~~~~a~~lgv~d~~~~--~~-~~~~~~~aD~Vivav---Pi~ 75 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGR---DRSAATLKAALELGVIDELTV--AG-LAEAAAEADLVIVAV---PIE 75 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEee---cCcHHHHHHHhhcCccccccc--ch-hhhhcccCCEEEEec---cHH
Confidence 56777766 45777777776 2323333 556666667777775222111 10 011234579998641 332
Q ss_pred cChHHHHHHHHHhccCCeEEE
Q 036725 284 ANDGMYMMEIDRVLRPGGYWV 304 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lv 304 (392)
....+++++...|++|-.+.
T Consensus 76 -~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 -ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred -HHHHHHHHhcccCCCCCEEE
Confidence 44677777777777765554
No 376
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=30.89 E-value=2.6e+02 Score=27.28 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=47.3
Q ss_pred eEEEECCc-CchHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEec-cc--cC--CCCCCccceEEecc
Q 036725 208 TALDTGCG-VASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLG-TI--KL--PYPSRAFDMAHCSR 277 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~~--~l--p~~d~sFDlV~~~~ 277 (392)
+||-.|+| .|..+..+++. . +++++- ++...+.+.+.|...++.... .. .+ ..+.+.+|+|+...
T Consensus 185 ~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~-----~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~ 259 (363)
T cd08279 185 TVAVIGCGGVGLNAIQGARIAGASRIIAVDP-----VPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAV 259 (363)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEEcC-----CHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcC
Confidence 67777764 45555556654 2 444432 223444555555422211110 00 01 11245699887532
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ....+.++.+.|+++|.++..+
T Consensus 260 ~-------~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 260 G-------RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred C-------ChHHHHHHHHHhhcCCeEEEEe
Confidence 1 1245788999999999998754
No 377
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=29.91 E-value=1.1e+02 Score=30.99 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=36.5
Q ss_pred hhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC
Q 036725 197 SVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG 250 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg 250 (392)
+.+.+.+++ +||-|..|......+|.+. +|++||++|.-.+-...+.|.-+.
T Consensus 29 ~aL~i~~~d--~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlAair~ 82 (380)
T PF11899_consen 29 EALNIGPDD--RVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLAAIRA 82 (380)
T ss_pred HHhCCCCCC--eEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHHHHHc
Confidence 345544554 8999998887777777775 899999987665555555555443
No 378
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=29.63 E-value=4.6e+02 Score=25.39 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=24.0
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.+|+|+.... ....+.+..+.|+++|.++..+
T Consensus 248 ~~~d~vid~~g-------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 248 RGADVVIEASG-------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCcEEEECCC-------ChHHHHHHHHHhccCCEEEEEc
Confidence 46899985311 1235788889999999999865
No 379
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=29.59 E-value=2.7e+02 Score=27.31 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=47.7
Q ss_pred eEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec---cc--cC-CCCCCccceEEec
Q 036725 208 TALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG---TI--KL-PYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~---~~--~l-p~~d~sFDlV~~~ 276 (392)
+||=.|+| .|.++..+++. .+++++. +....+.+++.|...++.... .. .+ ....+.+|+|+-.
T Consensus 190 ~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~-----~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~ 264 (369)
T cd08301 190 TVAIFGLGAVGLAVAEGARIRGASRIIGVDL-----NPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFEC 264 (369)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC-----CHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 77777864 34455555554 3555543 334566777777533221111 00 00 0112368888743
Q ss_pred ccccccccChHHHHHHHHHhccCC-eEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPG-GYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPG-G~lvl~~ 307 (392)
. -....+....+.+++| |.+++.+
T Consensus 265 ~-------G~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 265 T-------GNIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred C-------CChHHHHHHHHHhhcCCCEEEEEC
Confidence 1 1134567788899996 9998864
No 380
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=29.34 E-value=83 Score=24.97 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=24.5
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.+.+|+++... ...+ ....|..+...+|-||.+++..|+.
T Consensus 9 G~e~~~~i~d~-~~g~---~pnal~a~~gtv~gGGllill~p~~ 48 (92)
T PF08351_consen 9 GQEFDLLIFDA-FEGF---DPNALAALAGTVRGGGLLILLLPPW 48 (92)
T ss_dssp T--BSSEEEE--SS------HHHHHHHHTTB-TT-EEEEEES-G
T ss_pred CCccCEEEEEc-cCCC---CHHHHHHHhcceecCeEEEEEcCCH
Confidence 45688888652 2222 2467888899999999999998875
No 381
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=28.95 E-value=3.5e+02 Score=26.48 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=44.3
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+||=+|+| .|.++..+++. .+++++-+. +.....+++.|....+.......+.-....+|+|+-...
T Consensus 183 ~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~----~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g----- 253 (357)
T PLN02514 183 RGGILGLGGVGHMGVKIAKAMGHHVTVISSSD----KKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVP----- 253 (357)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCeEEEEeCCH----HHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCC-----
Confidence 67766654 45555666655 344443321 112223334554322111110011000124788874311
Q ss_pred cChHHHHHHHHHhccCCeEEEEEc
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.++.+.|++||.++..+
T Consensus 254 --~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 254 --VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred --chHHHHHHHHHhccCCEEEEEC
Confidence 1235778889999999998865
No 382
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=28.88 E-value=3e+02 Score=26.45 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=47.4
Q ss_pred eEEEECCc-CchHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEec-cc--cC--CCCCCccceEEecc
Q 036725 208 TALDTGCG-VASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLG-TI--KL--PYPSRAFDMAHCSR 277 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~~--~l--p~~d~sFDlV~~~~ 277 (392)
+||-.|+| .|..+..+++. . +++++- ++...+.+++.+...++.... +. .+ ....+.||+|+...
T Consensus 164 ~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~-----~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 164 SVLVTGAGPIGLMAIAVAKASGAYPVIVSDP-----NEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECC-----CHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECC
Confidence 55556654 34555555554 3 444422 223444555556432211111 10 01 12345699998541
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. ....+.++.+.|+++|.++..+.
T Consensus 239 g-------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 239 G-------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred C-------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 13457889999999999988753
No 383
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=28.81 E-value=97 Score=29.60 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=21.7
Q ss_pred ceEEEECCcCchHHHHHhhC---------CcEEEeCC
Q 036725 207 RTALDTGCGVASWGAYLFKK---------NVITMSFA 234 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---------~v~~vd~s 234 (392)
..++|+|||.|.++.+++.. .++.||-.
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 38999999999998888753 45666653
No 384
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=28.42 E-value=87 Score=31.38 Aligned_cols=107 Identities=18% Similarity=0.084 Sum_probs=60.5
Q ss_pred CCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHH------HHHHHHHHcCC-CcE--EEEeccccCCCC-CCc
Q 036725 202 DSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHE------AQVQFALERGV-PAV--IGVLGTIKLPYP-SRA 269 (392)
Q Consensus 202 ~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~------a~~~~a~~rg~-~~~--~~~~~~~~lp~~-d~s 269 (392)
.+|+ .|+|-=.|||++....+.- -|+|.|++..+++. .....-++.|. +.. .+.++...-|+- ...
T Consensus 207 ~pGd--ivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 207 KPGD--IVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred CCCC--EEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 3555 8999999999887666654 67788886554441 01111122231 111 122222233333 568
Q ss_pred cceEEecccc------------------------cccccC--------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 270 FDMAHCSRCL------------------------IPWSAN--------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 270 FDlV~~~~~l------------------------~~~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
||.|+|.--. .|++.- ...+|.=..|.|.-||.+++--|..
T Consensus 285 fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 285 FDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred eeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 9999987111 011100 0245666789999999999987754
No 385
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=28.11 E-value=3.1e+02 Score=26.35 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=46.8
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC---CCCCccceEEeccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP---YPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp---~~d~sFDlV~~~~~l~ 280 (392)
+||=.|+| .|..+..+++. ++++++- ++...+++++.|...++ ......+. .....+|+|+....
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~-----~~~~~~~~~~~g~~~~i-~~~~~~~~~~~~~~~~~d~vi~~~g-- 237 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMGFRTVAISR-----GSDKADLARKLGAHHYI-DTSKEDVAEALQELGGAKLILATAP-- 237 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeC-----ChHHHHHHHHcCCcEEe-cCCCccHHHHHHhcCCCCEEEECCC--
Confidence 77778853 34444445544 4555533 23345566666652221 11110100 00134788875311
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.++.+.|+++|.++..+
T Consensus 238 -----~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 238 -----NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred -----chHHHHHHHHHcccCCEEEEEe
Confidence 1346788899999999999865
No 386
>PRK10083 putative oxidoreductase; Provisional
Probab=27.61 E-value=3.5e+02 Score=25.82 Aligned_cols=89 Identities=24% Similarity=0.194 Sum_probs=46.3
Q ss_pred eEEEECCc-CchHHHHHhh-C-C---cEEEeCCccChHHHHHHHHHHcCCCcEEEEec-cc--cCCCCCCccceEEeccc
Q 036725 208 TALDTGCG-VASWGAYLFK-K-N---VITMSFAPRDSHEAQVQFALERGVPAVIGVLG-TI--KLPYPSRAFDMAHCSRC 278 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~-~-~---v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~~--~lp~~d~sFDlV~~~~~ 278 (392)
+||=.|+| .|..+..+++ . + +++++. .+...+.+++.|...++-... .. .+.-....+|+|+....
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~-----~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g 237 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYNVKAVIVADR-----IDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAAC 237 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCCEEEEEcC-----CHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCC
Confidence 67778854 3444445554 2 2 344432 334556666666533221111 11 11111123567764311
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
....+.+..+.|+++|.++..+.
T Consensus 238 -------~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 238 -------HPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12357888999999999998753
No 387
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=27.26 E-value=2.8e+02 Score=27.14 Aligned_cols=88 Identities=22% Similarity=0.195 Sum_probs=46.6
Q ss_pred eEEEECCc-CchHHHHHhhC---C-cEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc---cC--CCCCCccceEEecc
Q 036725 208 TALDTGCG-VASWGAYLFKK---N-VITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KL--PYPSRAFDMAHCSR 277 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~-v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~---~l--p~~d~sFDlV~~~~ 277 (392)
+||=.|+| .|..+..+++. . +++++- +....+++++.+...++-..... .+ ..++..||+|+...
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~-----s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~v 264 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFGASPIIAVDV-----RDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEAL 264 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEeC
Confidence 56655654 44555555554 3 555533 23344555555542221111100 00 11345699998531
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. . ...+.++.+.|+++|.++..+
T Consensus 265 g------~-~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 265 G------K-PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred C------C-HHHHHHHHHHHhcCCEEEEEc
Confidence 1 1 125788899999999998764
No 388
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=27.15 E-value=24 Score=28.30 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=10.0
Q ss_pred EEEECCcCchHHH
Q 036725 209 ALDTGCGVASWGA 221 (392)
Q Consensus 209 VLDiGCG~G~~~~ 221 (392)
-+|||||.|....
T Consensus 6 NIDIGcG~GNTmd 18 (124)
T PF07101_consen 6 NIDIGCGAGNTMD 18 (124)
T ss_pred ccccccCCCcchh
Confidence 3899999996443
No 389
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=26.59 E-value=3.4e+02 Score=26.05 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=44.8
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
++|=.|+| .|..+..+++. .+++++-+ ....+.+.+.+...++.........-..+.+|+|+.....
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~-----~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~---- 242 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALGAEVTAFSRS-----PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSA---- 242 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEcCC-----HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCC----
Confidence 44446753 34444445544 34444332 2244455555543322111111000114568998853211
Q ss_pred cChHHHHHHHHHhccCCeEEEEEc
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+.++.+.|+++|.++..+
T Consensus 243 ---~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 243 ---SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred ---cchHHHHHHHhcCCCEEEEEe
Confidence 123688889999999999865
No 390
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=26.40 E-value=70 Score=34.40 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=24.4
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCcc
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPR 236 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~ 236 (392)
+.|||+||..|.|..-..+. -|+|||+.|.
T Consensus 46 ~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 46 HVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred chheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 37999999999998766654 5789998765
No 391
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=26.26 E-value=64 Score=32.90 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=22.7
Q ss_pred CCccchHHHHHHHHHHHHHHHhhhhhcCCC
Q 036725 10 NRTRGSMSLFIVVGLCCFFYILGAWQRSGF 39 (392)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (392)
...|+.+..=.+++||+++|++|..+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~ 39 (408)
T PLN03193 10 YSSRSVVSRKWTLLLCLGCFCAGMLFTDRM 39 (408)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhhcccc
Confidence 345555666668899999999999887654
No 392
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=26.20 E-value=3.5e+02 Score=25.90 Aligned_cols=85 Identities=26% Similarity=0.276 Sum_probs=47.7
Q ss_pred eEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc---C-CCCCCccceEEeccc
Q 036725 208 TALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---L-PYPSRAFDMAHCSRC 278 (392)
Q Consensus 208 ~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~---l-p~~d~sFDlV~~~~~ 278 (392)
+||=.|+ +.|..+..+++. ++++++- +. ..+.+++.|.. .+....... . ......+|+|+....
T Consensus 180 ~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~-----~~-~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~~g 252 (350)
T cd08274 180 TVLVTGASGGVGSALVQLAKRRGAIVIAVAG-----AA-KEEAVRALGAD-TVILRDAPLLADAKALGGEPVDVVADVVG 252 (350)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC-----ch-hhHHHHhcCCe-EEEeCCCccHHHHHhhCCCCCcEEEecCC
Confidence 7888886 355666666655 4444432 11 34555666653 211111100 0 112456999985321
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+.++.+.|+++|.++..+
T Consensus 253 --------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 253 --------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred --------HHHHHHHHHHhccCCEEEEec
Confidence 135788899999999998754
No 393
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.93 E-value=1.8e+02 Score=29.00 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=50.2
Q ss_pred eEEEEC-CcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc-CCCCCCccceEEec-ccccc
Q 036725 208 TALDTG-CGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-LPYPSRAFDMAHCS-RCLIP 281 (392)
Q Consensus 208 ~VLDiG-CG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~-lp~~d~sFDlV~~~-~~l~~ 281 (392)
.|-=+| +|-|+++..++++ +|+++|-+...-. +..+..|-+.......+.+ ..--.++.|.++-. ..+
T Consensus 184 ~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kke----ea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~-- 257 (360)
T KOG0023|consen 184 WVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKE----EAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL-- 257 (360)
T ss_pred EEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHH----HHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--
Confidence 433344 3489999999987 8888877543222 2223345433332221211 11012344444311 111
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
....+..+.+.||++|.+++.+-+..
T Consensus 258 ----a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 258 ----AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred ----cccchHHHHHHhhcCCEEEEEeCcCC
Confidence 12236778899999999999875553
No 394
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=25.67 E-value=2.6e+02 Score=24.94 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=30.4
Q ss_pred HcCCCc-EEEEeccc-cCCC-CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 248 ERGVPA-VIGVLGTI-KLPY-PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 248 ~rg~~~-~~~~~~~~-~lp~-~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.||-+. .....++. .-|+ +.+..|++++. ++..+ .....-|+|||++++...
T Consensus 43 ~RGG~~~s~vRi~~~~~~~~~~~~~~D~lva~--------d~~~~-~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 43 QREGSVISHLRFGDEISSPLIPEGQADLLLAL--------EPAEV-ARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred hhCCeEEEEEEEcCccCCCccCCCCCCEEEEc--------CHHHH-HHHHhhcCCCcEEEEECC
Confidence 344333 33333443 3344 25789999975 23223 344566999999998753
No 395
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=25.21 E-value=4.5e+02 Score=25.97 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=25.4
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+|+|+.... .....+.++.+.|+++|.++..+
T Consensus 273 g~gvDvvld~~g------~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 273 GWGADIQVEAAG------APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCCCEEEECCC------CcHHHHHHHHHHHHcCCEEEEEC
Confidence 356899885411 22356788899999999999865
No 396
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=25.00 E-value=2.6e+02 Score=27.40 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=48.4
Q ss_pred eEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec-cc--cC-CCCCCccceEEeccc
Q 036725 208 TALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG-TI--KL-PYPSRAFDMAHCSRC 278 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~~--~l-p~~d~sFDlV~~~~~ 278 (392)
+||=.|+|. |..+..+++. .+++++.+ +...+.+.+.+...++.... +. .+ ......+|+|+-...
T Consensus 189 ~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~-----~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g 263 (365)
T cd08278 189 SIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIV-----DSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTG 263 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCC
Confidence 777777642 5555555554 25555443 33445556666422211111 00 00 011346899985311
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
....+.++.+.|+++|.++..+.
T Consensus 264 -------~~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 264 -------VPAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred -------CcHHHHHHHHHhccCCEEEEeCc
Confidence 12357889999999999998653
No 397
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.50 E-value=1.3e+02 Score=27.23 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=31.4
Q ss_pred CCCCccceEEeccccccccc-----------ChHHHHHHHHHhccCCeEEEEEc
Q 036725 265 YPSRAFDMAHCSRCLIPWSA-----------NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~-----------d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+..|+|+.+.|+..+.. +.+.++..+..+|+|+-.+|+..
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 34667899999999864432 23567777888888998888854
No 398
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=24.25 E-value=2.6e+02 Score=26.42 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=48.7
Q ss_pred eEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--c-CCCCCCccceEEecccc
Q 036725 208 TALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--K-LPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~-lp~~d~sFDlV~~~~~l 279 (392)
+||=.|+ +.|..+..+++. .+++++-+ +...+.+++.|...+....... . ..+....+|+|+....
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g- 222 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLGYEVVASTGK-----ADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVG- 222 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCeEEEEecC-----HHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCc-
Confidence 7777776 345666666665 44444332 3345566666653322111110 0 1112355888874311
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+.+..+.|+++|.++..+
T Consensus 223 -------~~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 223 -------GKTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred -------HHHHHHHHHHhhcCCEEEEEe
Confidence 235788899999999999875
No 399
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=24.02 E-value=4.1e+02 Score=25.53 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=46.1
Q ss_pred eEEEECCcC-chHHHHHhhC-C---cEEEeCCccChHHHHHHHHHHcCCCcEEEEec-cc----cCCCCCCccceEEecc
Q 036725 208 TALDTGCGV-ASWGAYLFKK-N---VITMSFAPRDSHEAQVQFALERGVPAVIGVLG-TI----KLPYPSRAFDMAHCSR 277 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~-~---v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~~----~lp~~d~sFDlV~~~~ 277 (392)
+||-.|+|. |..+..+++. + +++++ .++.....+.+.+...++.... +. ++ .+.+.+|+|+...
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G~~~v~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld~~ 239 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAGASLVIASD-----PNPYRLELAKKMGADVVINPREEDVVEVKSV-TDGTGVDVVLEMS 239 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEEC-----CCHHHHHHHHHhCcceeeCcccccHHHHHHH-cCCCCCCEEEECC
Confidence 666677642 5555556654 3 33332 1223334555555432211111 00 11 1235689998542
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ....+.++.+.|+++|.++..+
T Consensus 240 g-------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 240 G-------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred C-------CHHHHHHHHHHhccCCEEEEEc
Confidence 1 1235788899999999998865
No 400
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=23.94 E-value=1.6e+02 Score=25.91 Aligned_cols=104 Identities=16% Similarity=0.269 Sum_probs=46.9
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHH-HHHhhC--C-c-EEEeCCccChHHHHHHHHHHcC--CCc-EEEEe
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWG-AYLFKK--N-V-ITMSFAPRDSHEAQVQFALERG--VPA-VIGVL 258 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~-~~L~~~--~-v-~~vd~s~~d~~~a~~~~a~~rg--~~~-~~~~~ 258 (392)
..+...+.+.+.+.......++|.=.|+|....+ ..+... . + ..+|.++. +.| .|. .+-+.
T Consensus 49 ~~~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~-----------K~G~~~PGt~ipI~ 117 (160)
T PF08484_consen 49 RVEQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL-----------KQGKYLPGTHIPIV 117 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG-----------GTTEE-TTT--EEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh-----------hcCcccCCCCCeEC
Confidence 3344444455444322222347999999887544 222222 2 2 35666442 222 121 12233
Q ss_pred ccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 259 GTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 259 ~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
....+ .+...|.|+.. .|. ..+.+++.+...+..||.|++-.|
T Consensus 118 ~p~~l--~~~~pd~vivl----aw~-y~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 118 SPEEL--KERKPDYVIVL----AWN-YKDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp EGGG----SS--SEEEES-----GG-GHHHHHHHTHHHHHTT-EEEE-SS
T ss_pred CHHHH--hhCCCCEEEEc----Chh-hHHHHHHHHHHHHhcCCEEEEeCC
Confidence 33333 24457887642 455 667788888888899999998654
No 401
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=23.93 E-value=1.3e+02 Score=29.43 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=38.7
Q ss_pred cceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcE
Q 036725 206 VRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAV 254 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~ 254 (392)
..+|.-||.|.-....+|... .|.+||+++.-+.-+..+.+.-|.++..
T Consensus 64 ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA~R~Lp~h 114 (414)
T COG5379 64 GHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAAFRHLPSH 114 (414)
T ss_pred CcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHHHhhcccc
Confidence 458999999988888888877 8999999887777667777776666543
No 402
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=23.60 E-value=1e+02 Score=28.92 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=31.6
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCcc
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPR 236 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~ 236 (392)
.+.+.++......... -|.+||.|.|..+..+.+. +...++.+..
T Consensus 37 ~lT~KIvK~A~~~~~~--~v~eIgPgpggitR~il~a~~~RL~vVE~D~R 84 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLTNA--YVYEIGPGPGGITRSILNADVARLLVVEKDTR 84 (326)
T ss_pred HHHHHHHHhccccccc--eeEEecCCCCchhHHHHhcchhheeeeeeccc
Confidence 4556666666543333 7999999999999999976 4555555544
No 403
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=23.43 E-value=3.3e+02 Score=26.15 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=48.5
Q ss_pred eEEEECCcC-chHHHHHhhC-C---cEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc------cCCCCCCccceEEec
Q 036725 208 TALDTGCGV-ASWGAYLFKK-N---VITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI------KLPYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~-~---v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~------~lp~~d~sFDlV~~~ 276 (392)
+||=.|+|. |..+..+++. + +++++ .++...+++.+.|...++...... .+ ...+.+|+|+..
T Consensus 166 ~vlV~~~g~vg~~~~~la~~~G~~~v~~~~-----~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~d~ 239 (341)
T PRK05396 166 DVLITGAGPIGIMAAAVAKHVGARHVVITD-----VNEYRLELARKMGATRAVNVAKEDLRDVMAEL-GMTEGFDVGLEM 239 (341)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEc-----CCHHHHHHHHHhCCcEEecCccccHHHHHHHh-cCCCCCCEEEEC
Confidence 666677652 4555555554 2 34442 223344566666653322111110 11 124568999853
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.. ....+.++.+.|+++|.++..+.
T Consensus 240 ~g-------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 240 SG-------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CC-------CHHHHHHHHHHHhcCCEEEEEec
Confidence 11 13467888999999999999764
No 404
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=22.87 E-value=1.6e+02 Score=25.75 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=32.1
Q ss_pred cCCCc-EEEEeccc-cCCCCC-CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 249 RGVPA-VIGVLGTI-KLPYPS-RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 249 rg~~~-~~~~~~~~-~lp~~d-~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
||-+. .....++. ..+.+. +.+|++++. ++ ..+.....-|+|||++++....
T Consensus 34 rGG~~~~~vris~~~~~~~~~~~~~Dilv~l--------~~-~~~~~~~~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 34 RGGPVVSHVRISDEPIIPSPPVGEADILVAL--------DP-EALERHLKGLKPGGVVIINSSL 88 (173)
T ss_dssp SSSCEEEEEEEESS--SSSS-TSSESEEEES--------SH-HHHHHCGTTCETTEEEEEETTT
T ss_pred cCCeEEEEEEEecCcCccCcccCCCCEEEEc--------CH-HHHHHHhcCcCcCeEEEEECCC
Confidence 44333 33344444 334443 899999975 33 3345777789999999998643
No 405
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=22.41 E-value=6e+02 Score=23.57 Aligned_cols=84 Identities=26% Similarity=0.296 Sum_probs=48.4
Q ss_pred ceEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccc
Q 036725 207 RTALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+||=.|+ +.|..+..+++. ++++++- +....+.+++.|....+. ...+ +.++.+|+++....
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~-----~~~~~~~~~~~g~~~~~~--~~~~--~~~~~~d~vl~~~g--- 201 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAGAHVVAVVG-----SPARAEGLRELGAAEVVV--GGSE--LSGAPVDLVVDSVG--- 201 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-----CHHHHHHHHHcCCcEEEe--cccc--ccCCCceEEEECCC---
Confidence 37777776 355565555554 4444432 223455666666542221 1111 12346899985311
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEc
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+.+..+.|+++|.++..+
T Consensus 202 -----~~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 202 -----GPQLARALELLAPGGTVVSVG 222 (305)
T ss_pred -----cHHHHHHHHHhcCCCEEEEEe
Confidence 124788999999999999764
No 406
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=21.91 E-value=3.6e+02 Score=24.17 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=22.3
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+..|++++.. +.. +.....-|||||++++..
T Consensus 67 ~~~D~lva~d--------~~~-~~~~~~~lk~gg~ii~n~ 97 (197)
T PRK06853 67 GKADLLLAFE--------PLE-ALRYLPYLKKGGKVVVNT 97 (197)
T ss_pred CCCCEEEEeC--------HHH-HHHHHHhcCCCcEEEEEC
Confidence 3799999753 222 345566789999999975
No 407
>PRK06701 short chain dehydrogenase; Provisional
Probab=21.56 E-value=5e+02 Score=24.50 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=13.6
Q ss_pred HHHHHHHHhccCCeEEEEEc
Q 036725 288 MYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 288 ~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+++.+.+.++++|.+++.+
T Consensus 162 ~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 162 HMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HHHHHHHHHHhhCCeEEEEe
Confidence 45566666677788887754
No 408
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.26 E-value=3.4e+02 Score=26.72 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=35.8
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHH
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHE 240 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~ 240 (392)
+++..++.+...+.. ..||.==|.|..+..++++ .++++|-++..+..
T Consensus 11 Ll~E~i~~L~~~~~g--iyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~ 63 (314)
T COG0275 11 LLNEVVELLAPKPDG--IYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAI 63 (314)
T ss_pred HHHHHHHhcccCCCc--EEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHH
Confidence 556667777655554 8999999999999999887 48899886654433
No 409
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=21.12 E-value=5.9e+02 Score=24.48 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=23.9
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.+|+|+-... ....+.++.+.|+++|.++..+
T Consensus 240 ~~~d~vid~~g-------~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 240 GGVDVSFDCAG-------VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCCEEEECCC-------CHHHHHHHHHhccCCCEEEEEc
Confidence 45899985321 1235788899999999998865
No 410
>PLN02702 L-idonate 5-dehydrogenase
Probab=20.77 E-value=5.7e+02 Score=24.86 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=48.5
Q ss_pred eEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec---cc--c---CC-CCCCccceE
Q 036725 208 TALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG---TI--K---LP-YPSRAFDMA 273 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~---~~--~---lp-~~d~sFDlV 273 (392)
+||=+|+| .|..+..+++. .+++++. +....+.+++.|......... +. . +. ...+.+|+|
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 258 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAFGAPRIVIVDV-----DDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVS 258 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECC-----CHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEE
Confidence 67777764 34555555554 2455543 233445566666544332111 10 1 10 123468988
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 274 HCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 274 ~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+... .....+.++.+.|+++|.++..+
T Consensus 259 id~~-------g~~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 259 FDCV-------GFNKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred EECC-------CCHHHHHHHHHHHhcCCEEEEEc
Confidence 7531 11245889999999999998765
No 411
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=20.70 E-value=1e+02 Score=29.33 Aligned_cols=24 Identities=25% Similarity=0.485 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHHHHhhhhhcC
Q 036725 14 GSMSLFIVVGLCCFFYILGAWQRS 37 (392)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~ 37 (392)
....+++++++...+..||.||=+
T Consensus 13 ~~~l~~l~~~~~~il~~LGtWQl~ 36 (252)
T COG3346 13 LALLLLLVLATFAILLGLGTWQLQ 36 (252)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhh
Confidence 334455566666777889999974
No 412
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=20.66 E-value=1.3e+02 Score=30.27 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=45.7
Q ss_pred ceEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHH-HHcCCCcEEEEecc-ccCCCCCCccceEEeccccc
Q 036725 207 RTALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFA-LERGVPAVIGVLGT-IKLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a-~~rg~~~~~~~~~~-~~lp~~d~sFDlV~~~~~l~ 280 (392)
.+|+=+|+| .|..++..+.. +|+++|.++. ..+.+ ...+.. +...... ..+.-.-..+|+|+..-..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~-----~~~~l~~~~g~~-v~~~~~~~~~l~~~l~~aDvVI~a~~~- 240 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINID-----RLRQLDAEFGGR-IHTRYSNAYEIEDAVKRADLLIGAVLI- 240 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH-----HHHHHHHhcCce-eEeccCCHHHHHHHHccCCEEEEcccc-
Confidence 368888988 45555555544 5777766432 22222 222221 1111111 1111011358999975211
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEE
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+-...+..+-+++.+.+|||++++-.
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 11111222346777788999888763
Done!