BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036729
(970 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 234 bits (596), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 212/697 (30%), Positives = 312/697 (44%), Gaps = 94/697 (13%)
Query: 218 SNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPV--ELSHLFNLRYLNLLGNIFD--GE 273
SN+ + G++ S SL L+L+ NSLSG + L L++LN+ N D G+
Sbjct: 82 SNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 274 IPSELNKLAQLEELDLSKNNLSGSISL---LNTQLKNLETLVLSDNAFTGSIPIKFCLNN 330
+ L KL LE LDLS N++SG+ + L+ L+ L +S N +G + + C+N
Sbjct: 141 VSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN- 198
Query: 331 SSLQQLILARNKLSGEFPLELLRCXXXXXXXXXXNSFKGELPRSXXXXXXXXXXXXXXXS 390
L+ L ++ N S P L C N G+ R+
Sbjct: 199 --LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN- 449
F G PP +P L++L + L +N+ +G IP L+
Sbjct: 256 FVGPIPP---------------------LP-----LKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 450 CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPA-SLGYCKRLQQIALAD 508
C LT +D GNHF G++P G L L L N+ SG +P +L + L+ + L+
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 509 NKLSGSVPLTFRFLS-ELYLITLYNNSFKGPLPPSLFQLKK--LRIINFSHNKFSGSIYP 565
N+ SG +P + LS L + L +N+F GP+ P+L Q K L+ + +N F+G I P
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 566 -LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
L+ + L +L L+ N SG IPS L L L+L N L G IP E + L L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
L FN TG+I LS C L + LSNN LTG IP W+G L+ + L LS+N+F+G +PA
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 685 EIGNCSKLLKLSLRGNNLSGKIPP------------------------------------ 708
E+G+C L+ L L N +G IP
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 709 ----------EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL 758
++ L+ N N+ G+ T + L +S N +G IP ++
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 759 GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXX 818
G + L IL+L N+ SG IP +G L L L++S N+L G++P ++
Sbjct: 650 GSMPYL-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 819 XXXXXQGQLPLT--FSGFPLSSFLGNAKLCGPPLLSC 853
G +P F FP + FL N LCG PL C
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 216/712 (30%), Positives = 319/712 (44%), Gaps = 89/712 (12%)
Query: 30 LLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVXXXXX--------------- 74
L+ K L D +L +WS+ + C++ GVTC DD+ +
Sbjct: 14 LISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLS 72
Query: 75 ---------XXXXXXXXXRDFLNLTSLETLDLSSNSLTGLIPS--EXXXXXXXXXXXXYS 123
F SL +LDLS NSL+G + + S
Sbjct: 73 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 132
Query: 124 NS--FSGKIPPEIGFLNKLQVLRI------GDNLLWGEIPPHIGNLTELRELAIAYCQLN 175
N+ F GK+ + LN L+VL + G N++ + G EL+ LAI+ +++
Sbjct: 133 NTLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCG---ELKHLAISGNKIS 188
Query: 176 GSIPVE---------------------IGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQK 214
G + V +G+ L LD+ NKLSG AI C EL+
Sbjct: 189 GDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 215 FAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFN-LRYLNLLGNIFDGE 273
S+N G IP + LKSLQ L+LA N +G IP LS + L L+L GN F G
Sbjct: 249 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 274 IPSELNKLAQLEELDLSKNNLSGSISLLNT-QLKNLETLVLSDNAFTGSIPIKFCLNNSS 332
+P + LE L LS NN SG + + +++ L+ L LS N F+G +P ++S
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 333 LQQLILARNKLSGEFPLELLRC--XXXXXXXXXXNSFKGELPRSXXXXXXXXXXXXXXXS 390
L L L+ N SG L + N F G++P +
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC 450
+G+ P +G+LSKL +L L+ NM+ G+IP E+ ++TL + L N ++G IP L+NC
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 451 SGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNK 510
+ L I N +G IP+ +G+L+NL IL+L N SG IPA LG C+ L + L N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 511 LSGSVP---------LTFRFLSELYLITLYNNS-------------FKGPLPPSLFQLKK 548
+G++P + F++ + + N+ F+G L +L
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 549 LRIINFSHNKFSGSIYPLTGSN-SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLT 607
N + + G P +N S+ LD++ N SG IP E+ L L L HN ++
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 608 GNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIP 659
G+IP E G L LN LDLS N G+I +S L + LSNN L+G IP
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%)
Query: 124 NSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG 183
N SG IP EIG + L +L +G N + G IP +G+L L L ++ +L+G IP +
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 184 NLKHLTSLDLQMNKLSGLIPE 204
L LT +DL N LSG IPE
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 233 bits (594), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 214/697 (30%), Positives = 317/697 (45%), Gaps = 94/697 (13%)
Query: 218 SNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPV--ELSHLFNLRYLNLLGNIFD--GE 273
SN+ + G++ S SL L+L+ NSLSG + L L++LN+ N D G+
Sbjct: 85 SNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 274 IPSELNKLAQLEELDLSKNNLSGSISL---LNTQLKNLETLVLSDNAFTGSIPIKFCLNN 330
+ L KL LE LDLS N++SG+ + L+ L+ L +S N +G + + C+N
Sbjct: 144 VSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN- 201
Query: 331 SSLQQLILARNKLSGEFPLELLRCXXXXXXXXXXNSFKGELPRSXXXXXXXXXXXXXXXS 390
L+ L ++ N S P L C N G+ R+
Sbjct: 202 --LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA---------------- 242
Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN- 449
I ++L+ L + N G IP L++L + L +N+ +G IP L+
Sbjct: 243 --------ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 450 CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPA-SLGYCKRLQQIALAD 508
C LT +D GNHF G++P G L L L N+ SG +P +L + L+ + L+
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 509 NKLSGSVPLTFRFLS-ELYLITLYNNSFKGPLPPSLFQLKK--LRIINFSHNKFSGSIYP 565
N+ SG +P + LS L + L +N+F GP+ P+L Q K L+ + +N F+G I P
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 566 -LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
L+ + L +L L+ N SG IPS L L L+L N L G IP E + L L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
L FN TG+I LS C L + LSNN LTG IP W+G L+ + L LS+N+F+G +PA
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 685 EIGNCSKLLKLSLRGNNLSGKIPP------------------------------------ 708
E+G+C L+ L L N +G IP
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 709 ----------EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL 758
++ L+ N N+ G+ T + L +S N +G IP ++
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 759 GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXX 818
G + L IL+L N+ SG IP +G L L L++S N+L G++P ++
Sbjct: 653 GSMPYL-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 819 XXXXXQGQLPLT--FSGFPLSSFLGNAKLCGPPLLSC 853
G +P F FP + FL N LCG PL C
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 216/712 (30%), Positives = 319/712 (44%), Gaps = 89/712 (12%)
Query: 30 LLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVXXXXX--------------- 74
L+ K L D +L +WS+ + C++ GVTC DD+ +
Sbjct: 17 LISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLS 75
Query: 75 ---------XXXXXXXXXRDFLNLTSLETLDLSSNSLTGLIPS--EXXXXXXXXXXXXYS 123
F SL +LDLS NSL+G + + S
Sbjct: 76 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135
Query: 124 NS--FSGKIPPEIGFLNKLQVLRI------GDNLLWGEIPPHIGNLTELRELAIAYCQLN 175
N+ F GK+ + LN L+VL + G N++ + G EL+ LAI+ +++
Sbjct: 136 NTLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCG---ELKHLAISGNKIS 191
Query: 176 GSIPVE---------------------IGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQK 214
G + V +G+ L LD+ NKLSG AI C EL+
Sbjct: 192 GDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 215 FAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFN-LRYLNLLGNIFDGE 273
S+N G IP + LKSLQ L+LA N +G IP LS + L L+L GN F G
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 274 IPSELNKLAQLEELDLSKNNLSGSISLLNT-QLKNLETLVLSDNAFTGSIPIKFCLNNSS 332
+P + LE L LS NN SG + + +++ L+ L LS N F+G +P ++S
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 333 LQQLILARNKLSGEFPLELLRCXXXXXX--XXXXNSFKGELPRSXXXXXXXXXXXXXXXS 390
L L L+ N SG L + N F G++P +
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC 450
+G+ P +G+LSKL +L L+ NM+ G+IP E+ ++TL + L N ++G IP L+NC
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 451 SGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNK 510
+ L I N +G IP+ +G+L+NL IL+L N SG IPA LG C+ L + L N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 511 LSGSVP---------LTFRFLSELYLITLYNNS-------------FKGPLPPSLFQLKK 548
+G++P + F++ + + N+ F+G L +L
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 549 LRIINFSHNKFSGSIYPLTGSN-SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLT 607
N + + G P +N S+ LD++ N SG IP E+ L L L HN ++
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 608 GNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIP 659
G+IP E G L LN LDLS N G+I +S L + LSNN L+G IP
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%)
Query: 124 NSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG 183
N SG IP EIG + L +L +G N + G IP +G+L L L ++ +L+G IP +
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 184 NLKHLTSLDLQMNKLSGLIPE 204
L LT +DL N LSG IPE
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 141/316 (44%), Gaps = 49/316 (15%)
Query: 565 PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN--IPSEFGKLTELNF 622
P T S+ L D N ++ G + + ++ L L+ +L IPS L LNF
Sbjct: 21 PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80
Query: 623 LDLS-FNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGT 681
L + N+ G I P ++K +L +L +++ ++G IP +L ++ + LD S N +GT
Sbjct: 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140
Query: 682 VPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL-NVLNLQRNSLSGNIPSTIQQCKKL 740
+P I + L+ ++ GN +SG IP G+ + L + + RN L+G IP T L
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NL 199
Query: 741 YELRLSENFFTG--------------------SIPADLGRLTELQVI--LDLSKNNFSGE 778
+ LS N G S+ DLG++ + + LDL N G
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 779 IPPSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXXXXXXXQGQLPLTFSGFPLSS 838
+P L L L LN+S+N L G++P QG F +S+
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIP-------------------QGG---NLQRFDVSA 297
Query: 839 FLGNAKLCGPPLLSCS 854
+ N LCG PL +C+
Sbjct: 298 YANNKCLCGSPLPACT 313
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 3/218 (1%)
Query: 396 PPEIGNLSKLENLFLFD-NMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLT 454
P + NL L L++ N + G IP I KL L +Y+ +SG+IP L+ L
Sbjct: 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 455 EIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLG-YCKRLQQIALADNKLSG 513
+DF N SG++P ++ L NLV + N +SG IP S G + K + ++ N+L+G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 514 SVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLT 573
+P TF L L + L N +G K + I+ + N + + + S +L
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 574 ALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP 611
LDL NN G +P L + L L ++ N+L G IP
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 140/332 (42%), Gaps = 62/332 (18%)
Query: 26 DSFWLLRIKQELVDPTGILENWSARAHMC--SWHGVTCSDDQKHVVXXXXXXXXXXXXXX 83
D LL+IK++L +PT L +W C +W GV C D +
Sbjct: 7 DKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTY--------------- 50
Query: 84 RDFLNLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVL 143
+ LDLS +L P IP + L L L
Sbjct: 51 -------RVNNLDLSGLNLPKPYP----------------------IPSSLANLPYLNFL 81
Query: 144 RIGD-NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLI 202
IG N L G IPP I LT+L L I + ++G+IP + +K L +LD N LSG +
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141
Query: 203 PEAIHGCEELQKFAASNNMLEGTIPSSI-VLLKSLQILNLANNSLSGSIPVELSHLFNLR 261
P +I L N + G IP S K + ++ N L+G IP ++L NL
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLA 200
Query: 262 YLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGS 321
+++L N+ +G+ +++ L+KN+L+ + + KNL L L +N G+
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGT 259
Query: 322 IP-----IKFCLNNSSLQQLILARNKLSGEFP 348
+P +KF L L ++ N L GE P
Sbjct: 260 LPQGLTQLKF------LHSLNVSFNNLCGEIP 285
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 136/302 (45%), Gaps = 28/302 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID- 457
+ NL+ L L LF+N IT P++ L L+ + L N +S +++ SGLT +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 458 -FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP 516
FGN + P + L L L + N +S + L L+ + +N++S P
Sbjct: 156 LNFGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 211
Query: 517 LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALD 576
L L+ L ++L N K +L L L ++ ++N+ S ++ PL+G LT L
Sbjct: 212 L--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELK 266
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
L N S P LA L+ L L N L P L L +L L FN+ + I+P
Sbjct: 267 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DISP 321
Query: 637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696
+S KL L SNN+++ L +L I L N + P + N +++ +L
Sbjct: 322 -VSSLTKLQRLFFSNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLG 376
Query: 697 LR 698
L
Sbjct: 377 LN 378
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 129/301 (42%), Gaps = 41/301 (13%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
+L+ L I NN P L L KL I ++N+ + I PL +LT L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLF 115
Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLT----------------GNIPSE---FGKLTE 619
NN + P L NL+RL L+ N ++ GN ++ LT
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT 173
Query: 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
L LD+S N + L+K L L+ +NN+++ P LG L + EL L+ N
Sbjct: 174 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 229
Query: 680 GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK 739
+ + + L L L N +S P + LT L L L N +S P +
Sbjct: 230 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 283
Query: 740 LYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQ 798
L L L+EN P ++L LT L + NN S +I P + SL KL+RL S N+
Sbjct: 284 LTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRLFFSNNK 337
Query: 799 L 799
+
Sbjct: 338 V 338
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 98/221 (44%), Gaps = 50/221 (22%)
Query: 88 NLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLR--I 145
NLT+LE LD+SSN ++ +I L KL L I
Sbjct: 170 NLTTLERLDISSNKVS-----------------------------DISVLAKLTNLESLI 200
Query: 146 GDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG---NLKHLTSLDLQMNKLSGLI 202
N +I P +G LT L EL+ LNG+ +IG +L +LT LDL N++S L
Sbjct: 201 ATNNQISDITP-LGILTNLDELS-----LNGNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 203 PEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRY 262
P + G +L + N + P + L +L L L N L P+ S+L NL Y
Sbjct: 255 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTY 308
Query: 263 LNL-LGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN 302
L L NI D S ++ L +L+ L S N +S SL N
Sbjct: 309 LTLYFNNISD---ISPVSSLTKLQRLFFSNNKVSDVSSLAN 346
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 136/302 (45%), Gaps = 28/302 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID- 457
+ NL+ L L LF+N IT P++ L L+ + L N +S +++ SGLT +
Sbjct: 107 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 159
Query: 458 -FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP 516
FGN + P + L L L + N +S + L L+ + +N++S P
Sbjct: 160 LSFGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 215
Query: 517 LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALD 576
L L+ L ++L N K +L L L ++ ++N+ S ++ PL+G LT L
Sbjct: 216 L--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELK 270
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
L N S P LA L+ L L N L P L L +L L FN+ + I+P
Sbjct: 271 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DISP 325
Query: 637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696
+S KL L +NN+++ L +L I L N + P + N +++ +L
Sbjct: 326 -VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLG 380
Query: 697 LR 698
L
Sbjct: 381 LN 382
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 129/301 (42%), Gaps = 41/301 (13%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
+L+ L I NN P L L KL I ++N+ + I PL +LT L L
Sbjct: 63 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLF 119
Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLT----------------GNIPSE---FGKLTE 619
NN + P L NL+RL L+ N ++ GN ++ LT
Sbjct: 120 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 177
Query: 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
L LD+S N + L+K L L+ +NN+++ P LG L + EL L+ N
Sbjct: 178 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 233
Query: 680 GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK 739
+ + + L L L N +S P + LT L L L N +S P +
Sbjct: 234 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 287
Query: 740 LYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQ 798
L L L+EN P ++L LT L + NN S +I P + SL KL+RL + N+
Sbjct: 288 LTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRLFFANNK 341
Query: 799 L 799
+
Sbjct: 342 V 342
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 98/221 (44%), Gaps = 50/221 (22%)
Query: 88 NLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLR--I 145
NLT+LE LD+SSN ++ +I L KL L I
Sbjct: 174 NLTTLERLDISSNKVS-----------------------------DISVLAKLTNLESLI 204
Query: 146 GDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG---NLKHLTSLDLQMNKLSGLI 202
N +I P +G LT L EL+ LNG+ +IG +L +LT LDL N++S L
Sbjct: 205 ATNNQISDITP-LGILTNLDELS-----LNGNQLKDIGTLASLTNLTDLDLANNQISNLA 258
Query: 203 PEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRY 262
P + G +L + N + P + L +L L L N L P+ S+L NL Y
Sbjct: 259 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTY 312
Query: 263 LNL-LGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN 302
L L NI D S ++ L +L+ L + N +S SL N
Sbjct: 313 LTLYFNNISD---ISPVSSLTKLQRLFFANNKVSDVSSLAN 350
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 117/259 (45%), Gaps = 48/259 (18%)
Query: 88 NLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLRIGD 147
NLT+L L+LSSN+++ + ++ SG L LQ L G+
Sbjct: 131 NLTNLNRLELSSNTISDI------------------SALSG--------LTSLQQLSFGN 164
Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIH 207
+ ++ P + NLT L L I+ ++ I V + L +L SL N++S + P I
Sbjct: 165 QV--TDLKP-LANLTTLERLDISSNKV-SDISV-LAKLTNLESLIATNNQISDITPLGI- 218
Query: 208 GCEELQKFAASNNMLE--GTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNL 265
L + + + N L+ GT+ S L +L L+LANN +S P LS L L L L
Sbjct: 219 -LTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKL 271
Query: 266 LGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIK 325
N P L L L L+L++N L + N LKNL L L N + P+
Sbjct: 272 GANQISNISP--LAGLTALTNLELNENQLEDISPISN--LKNLTYLTLYFNNISDISPVS 327
Query: 326 FCLNNSSLQQLILARNKLS 344
+ LQ+L A NK+S
Sbjct: 328 SL---TKLQRLFFANNKVS 343
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 8/243 (3%)
Query: 86 FLNLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLRI 145
F T ++ LDL++ L GL PS +NSF L+ L I
Sbjct: 273 FRCFTRVQELDLTAAHLNGL-PSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYI 331
Query: 146 GDNLLWGEIPPH-IGNLTELRELAIAYCQLNGS--IPVEIGNLKHLTSLDLQMNKLSGLI 202
N+ ++ + L L++L +++ + S +++ NL+HL L+L N+ GL
Sbjct: 332 KGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLE 391
Query: 203 PEAIHGCEELQKFAASNNMLEGTIPSS-IVLLKSLQILNLANNSLSGSIPVELSHLFNLR 261
+A C +L+ + L P S L L++LNL++ L S L+ L +LR
Sbjct: 392 DQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLR 451
Query: 262 YLNLLGNIF-DGEIPSE--LNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAF 318
+LNL GN F DG I L + LE L LS NL L+N+ L LS N+
Sbjct: 452 HLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL 511
Query: 319 TGS 321
TG
Sbjct: 512 TGD 514
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 97/219 (44%), Gaps = 8/219 (3%)
Query: 471 MGKLKNLVILQLRQNDL--SGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLI 528
+ KL+NL L L +D+ S L + LQ + L+ N+ G F+ +L L+
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 529 TLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGS-IYPLTGSNSLTALDLTNNSF-SGP 585
+ P S FQ L LR++N SH S + L G L L+L NSF G
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464
Query: 586 IPSE--LAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAK 643
I L M +L L L+ +L F L +N LDLS NS TG LS
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKG 524
Query: 644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTV 682
L +L +++N + P L +L + ++LS N + T
Sbjct: 525 L-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTC 562
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Query: 156 PH--IGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKL-SGLIPEA--IHGCE 210
PH NL LR L +++C L+ S + L+ L L+LQ N G I + +
Sbjct: 416 PHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVG 475
Query: 211 ELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIF 270
L+ S+ L + L+++ L+L++NSL+G LSHL L YLN+ N
Sbjct: 476 SLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNI 534
Query: 271 DGEIPSELNKLAQLEELDLSKNNLSGSIS 299
P L L+Q ++LS N L + S
Sbjct: 535 RIIPPHLLPALSQQSIINLSHNPLDCTCS 563
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 135/302 (44%), Gaps = 28/302 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID- 457
+ NL+ L L LF+N IT P++ L L+ + L N +S +++ SGLT +
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 160
Query: 458 -FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP 516
FGN + P + L L L + N +S + L L+ + +N++S P
Sbjct: 161 LSFGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216
Query: 517 LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALD 576
L L+ L ++L N K +L L L ++ ++N+ S ++ PL+G LT L
Sbjct: 217 L--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELK 271
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
L N S P LA L+ L L N L P L L +L L FN+ + I+P
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DISP 326
Query: 637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696
+S KL L NN+++ L +L I L N + P + N +++ +L
Sbjct: 327 -VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381
Query: 697 LR 698
L
Sbjct: 382 LN 383
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 125/294 (42%), Gaps = 41/294 (13%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
+L+ L I NN P L L KL I ++N+ + I PL +LT L L
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLF 120
Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLT----------------GNIPSE---FGKLTE 619
NN + P L NL+RL L+ N ++ GN ++ LT
Sbjct: 121 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 178
Query: 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
L LD+S N + L+K L L+ +NN+++ P LG L + EL L+ N
Sbjct: 179 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234
Query: 680 GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK 739
+ + + L L L N +S P + LT L L L N +S P +
Sbjct: 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 288
Query: 740 LYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL 792
L L L+EN P ++L LT L + NN S +I P + SL KL+RL
Sbjct: 289 LTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRL 336
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 89/203 (43%), Gaps = 47/203 (23%)
Query: 88 NLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLR--I 145
NLT+LE LD+SSN ++ +I L KL L I
Sbjct: 175 NLTTLERLDISSNKVS-----------------------------DISVLAKLTNLESLI 205
Query: 146 GDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG---NLKHLTSLDLQMNKLSGLI 202
N +I P +G LT L EL+ LNG+ +IG +L +LT LDL N++S L
Sbjct: 206 ATNNQISDITP-LGILTNLDELS-----LNGNQLKDIGTLASLTNLTDLDLANNQISNLA 259
Query: 203 PEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRY 262
P + G +L + N + P + L +L L L N L P+ S+L NL Y
Sbjct: 260 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTY 313
Query: 263 LNL-LGNIFDGEIPSELNKLAQL 284
L L NI D S L KL +L
Sbjct: 314 LTLYFNNISDISPVSSLTKLQRL 336
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 135/303 (44%), Gaps = 29/303 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLT---E 455
+ NL+ L L LF+N IT P++ L L+ + L N +S +++ SGLT +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 456 IDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV 515
+ F N + P + L L L + N +S + L L+ + +N++S
Sbjct: 156 LSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT 211
Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTAL 575
PL L+ L ++L N K +L L L ++ ++N+ S + PL+G LT L
Sbjct: 212 PL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTEL 266
Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635
L N S P LA L+ L L N L P L L +L L FN+ + I+
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DIS 321
Query: 636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
P +S KL L SNN+++ L +L I L N + P + N +++ +L
Sbjct: 322 P-VSSLTKLQRLFFSNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQL 376
Query: 696 SLR 698
L
Sbjct: 377 GLN 379
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 126/302 (41%), Gaps = 42/302 (13%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
+L+ L I NN P L L KL I ++N+ I PL +LT L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLF 115
Query: 579 NNSFSGPIP-------SELAMSRN-------------LSRLRLAHNHLTGNIPSEFGKLT 618
NN + P + L +S N L +L + N +T P LT
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
L LD+S N + L+K L L+ +NN+++ P LG L + EL L+ N
Sbjct: 174 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 679 NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCK 738
+ + + L L L N +S P + LT L L L N +S P +
Sbjct: 230 KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 283
Query: 739 KLYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN 797
L L L+EN P ++L LT L + NN S +I P + SL KL+RL S N
Sbjct: 284 ALTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRLFFSNN 337
Query: 798 QL 799
++
Sbjct: 338 KV 339
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 100/220 (45%), Gaps = 28/220 (12%)
Query: 89 LTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLR--IG 146
LTSL+ L SSN +T L P SN S +I L KL L I
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS-----DISVLAKLTNLESLIA 202
Query: 147 DNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG---NLKHLTSLDLQMNKLSGLIP 203
N +I P +G LT L EL+ LNG+ +IG +L +LT LDL N++S L P
Sbjct: 203 TNNQISDITP-LGILTNLDELS-----LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 204 EAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYL 263
+ G +L + N + P + L +L L L N L P+ S+L NL YL
Sbjct: 257 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYL 310
Query: 264 NL-LGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN 302
L NI D S ++ L +L+ L S N +S SL N
Sbjct: 311 TLYFNNISD---ISPVSSLTKLQRLFFSNNKVSDVSSLAN 347
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 135/302 (44%), Gaps = 28/302 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID- 457
+ NL+ L L LF+N IT P++ L L+ + L N +S +++ SGLT +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 458 -FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP 516
FGN + P + L L L + N +S + L L+ + +N++S P
Sbjct: 156 LNFGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 211
Query: 517 LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALD 576
L L+ L ++L N K +L L L ++ ++N+ S ++ PL+G LT L
Sbjct: 212 L--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELK 266
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
L N S P LA L+ L L N L P L L +L L FN+ + I+P
Sbjct: 267 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DISP 321
Query: 637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696
+S KL L NN+++ L +L I L N + P + N +++ +L
Sbjct: 322 -VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLG 376
Query: 697 LR 698
L
Sbjct: 377 LN 378
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 125/294 (42%), Gaps = 41/294 (13%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
+L+ L I NN P L L KL I ++N+ + I PL +LT L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLF 115
Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLT----------------GNIPSE---FGKLTE 619
NN + P L NL+RL L+ N ++ GN ++ LT
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT 173
Query: 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
L LD+S N + L+K L L+ +NN+++ P LG L + EL L+ N
Sbjct: 174 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 229
Query: 680 GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK 739
+ + + L L L N +S P + LT L L L N +S P +
Sbjct: 230 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 283
Query: 740 LYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL 792
L L L+EN P ++L LT L + NN S +I P + SL KL+RL
Sbjct: 284 LTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRL 331
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 89/203 (43%), Gaps = 47/203 (23%)
Query: 88 NLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLR--I 145
NLT+LE LD+SSN ++ +I L KL L I
Sbjct: 170 NLTTLERLDISSNKVS-----------------------------DISVLAKLTNLESLI 200
Query: 146 GDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG---NLKHLTSLDLQMNKLSGLI 202
N +I P +G LT L EL+ LNG+ +IG +L +LT LDL N++S L
Sbjct: 201 ATNNQISDITP-LGILTNLDELS-----LNGNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 203 PEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRY 262
P + G +L + N + P + L +L L L N L P+ S+L NL Y
Sbjct: 255 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTY 308
Query: 263 LNL-LGNIFDGEIPSELNKLAQL 284
L L NI D S L KL +L
Sbjct: 309 LTLYFNNISDISPVSSLTKLQRL 331
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 136/303 (44%), Gaps = 29/303 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLT---E 455
+ NL+ L L LF+N IT P++ L L+ + L N +S +++ SGLT +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 456 IDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV 515
++F N + P + L L L + N +S + L L+ + +N++S
Sbjct: 156 LNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT 211
Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTAL 575
PL L+ L ++L N K +L L L ++ ++N+ S ++ PL+G LT L
Sbjct: 212 PL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTEL 266
Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635
L N S P LA L+ L L N L P L L +L L FN+ + I+
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DIS 321
Query: 636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
P +S KL L NN+++ L +L I L N + P + N +++ +L
Sbjct: 322 P-VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQL 376
Query: 696 SLR 698
L
Sbjct: 377 GLN 379
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 122/295 (41%), Gaps = 42/295 (14%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
+L+ L I NN P L L KL I ++N+ I PL +LT L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLF 115
Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLTG-------------NIPSE-------FGKLT 618
NN + P L NL+RL L+ N ++ N S LT
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLT 173
Query: 619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
L LD+S N + L+K L L+ +NN+++ P LG L + EL L+ N
Sbjct: 174 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 679 NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCK 738
+ + + L L L N +S P + LT L L L N +S P +
Sbjct: 230 KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 283
Query: 739 KLYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL 792
L L L+EN P ++L LT L + NN S +I P + SL KL+RL
Sbjct: 284 ALTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRL 332
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 92/202 (45%), Gaps = 25/202 (12%)
Query: 89 LTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLR--IG 146
LTSL+ L+ SSN +T L P SN S +I L KL L I
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS-----DISVLAKLTNLESLIA 202
Query: 147 DNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG---NLKHLTSLDLQMNKLSGLIP 203
N +I P +G LT L EL+ LNG+ +IG +L +LT LDL N++S L P
Sbjct: 203 TNNQISDITP-LGILTNLDELS-----LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 204 EAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYL 263
+ G +L + N + P + L +L L L N L P+ S+L NL YL
Sbjct: 257 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYL 310
Query: 264 NL-LGNIFDGEIPSELNKLAQL 284
L NI D S L KL +L
Sbjct: 311 TLYFNNISDISPVSSLTKLQRL 332
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 182 IGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNL 241
G L HL L+L+ N+L+G+ P A G +Q+ N ++ + L L+ LNL
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 242 ANNSLSGSIPVELSHLFNLRYLNLLGNIFD 271
+N +S +P HL +L LNL N F+
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 471 MGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITL 530
G+L +LV L+L++N L+G P + +Q++ L +NK+ F L +L + L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 531 YNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY 564
Y+N +P S L L +N + N F+ + +
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 136 FLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQM 195
LN ++ RI + L+G +P L +L + QL G P H+ L L
Sbjct: 35 LLNDNELGRISSDGLFGRLP-------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 196 NKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
NK+ + + G +L+ +N + +P S L SL LNLA+N
Sbjct: 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 408 LFLFDNMITGKIPVE--IGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSG 465
L L DN + G+I + G+L L + L NQ++G P S + E+ N
Sbjct: 34 LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 466 SIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSEL 525
+ L L L L N +S +P S + L + LA N + + L + F L
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWL 151
Query: 526 YLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGS 562
+L + + P +++ ++I + H++F S
Sbjct: 152 RKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCS 185
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 710 IGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILD 769
G L L L L+RN L+G P+ + + EL+L EN L +L+ L+
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT-LN 108
Query: 770 LSKNNFSGEIPPSLGSLLKLERLNISYN 797
L N S +P S L L LN++ N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 135/303 (44%), Gaps = 29/303 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLT---E 455
+ NL+ L L LF+N IT P++ L L+ + L N +S +++ SGLT +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 456 IDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV 515
+ F N + P + L L L + N +S + L L+ + +N++S
Sbjct: 156 LSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT 211
Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTAL 575
PL L+ L ++L N K +L L L ++ ++N+ S ++ PL+G LT L
Sbjct: 212 PL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTEL 266
Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635
L N S P LA L+ L L N L P L L +L L FN+ + I+
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DIS 321
Query: 636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
P +S KL L NN+++ L +L I L N + P + N +++ +L
Sbjct: 322 P-VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQL 376
Query: 696 SLR 698
L
Sbjct: 377 GLN 379
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 122/295 (41%), Gaps = 42/295 (14%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
+L+ L I NN P L L KL I ++N+ I PL +LT L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLF 115
Query: 579 NNSFSGPIP-------SELAMSRN-------------LSRLRLAHNHLTGNIPSEFGKLT 618
NN + P + L +S N L +L + N +T P LT
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
L LD+S N + L+K L L+ +NN+++ P LG L + EL L+ N
Sbjct: 174 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 679 NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCK 738
+ + + L L L N +S P + LT L L L N +S P +
Sbjct: 230 KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 283
Query: 739 KLYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL 792
L L L+EN P ++L LT L + NN S +I P + SL KL+RL
Sbjct: 284 ALTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRL 332
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 89 LTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLR--IG 146
LTSL+ L SSN +T L P SN S +I L KL L I
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS-----DISVLAKLTNLESLIA 202
Query: 147 DNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG---NLKHLTSLDLQMNKLSGLIP 203
N +I P +G LT L EL+ LNG+ +IG +L +LT LDL N++S L P
Sbjct: 203 TNNQISDITP-LGILTNLDELS-----LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 204 EAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYL 263
+ G +L + N + P + L +L L L N L P+ S+L NL YL
Sbjct: 257 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYL 310
Query: 264 NL-LGNIFDGEIPSELNKLAQL 284
L NI D S L KL +L
Sbjct: 311 TLYFNNISDISPVSSLTKLQRL 332
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 11/264 (4%)
Query: 503 QIALADNKLSGSVPLTFRFLSELYLITLYNN--SFKGPLPPSLFQLKKLRIINFSHNKFS 560
++ L NKL F L++L ++L +N SFKG S F L+ ++ S N
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMS-RNLSRLRLAHNHLTGNIPSEFGKLTE 619
G L LD +++ + +S RNL L ++H H F L+
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 620 LNFLDLSFNSFTGQIAPQL-SKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
L L ++ NSF P + ++ L L LS +L P SL + L++S NNF
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 679 NG--TVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNL-TALNVLNLQRNSLSGNIP--ST 733
T P + N ++L SL N++ E+ + ++L LNL +N + S
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSL--NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 269
Query: 734 IQQCKKLYELRLSENFFTGSIPAD 757
+Q K +L + + P+D
Sbjct: 270 LQWIKDQRQLLVEVERMECATPSD 293
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 178 IPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQ 237
+P L++LT LDL +L L P A + LQ S+N L SLQ
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 238 ILNLANNSLSGSIPVELSHL-FNLRYLNLLGNIF 270
+L+ + N + S EL H +L +LNL N F
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 21/178 (11%)
Query: 466 SIPE-TMGKLKNLVILQLRQNDLSGPIPASLGYCKR----LQQIALADNKLSGSVPLTFR 520
S+P KL L L L N LS G C + + D +G + ++
Sbjct: 42 SLPHGVFDKLTQLTKLSLSSNGLSFK-----GCCSQSDFGTTSLKYLDLSFNGVITMSSN 96
Query: 521 FL--SELYLITLYNNSFKGPLPPSLF-QLKKLRIINFSHNK----FSGSIYPLTGSNSLT 573
FL +L + +++ K S+F L+ L ++ SH F+G G +SL
Sbjct: 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLE 153
Query: 574 ALDLTNNSF-SGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSF 630
L + NSF +P RNL+ L L+ L P+ F L+ L L++S N+F
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 78/204 (38%), Gaps = 28/204 (13%)
Query: 597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN--SFTGQIAPQLSKCAKLAHLLLSNNEL 654
+RL L N L F KLT+L L LS N SF G + L +L LS N +
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 655 TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIG-NCSKLLKLSLRGNNLSGKIPPEIGNL 713
+LG L+++ LD +N + + L+ L + + L
Sbjct: 91 ITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 714 TALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKN 773
++L VL + NS N F I +L LT LDLS+
Sbjct: 150 SSLEVLKMAGNSFQEN--------------------FLPDIFTELRNLT----FLDLSQC 185
Query: 774 NFSGEIPPSLGSLLKLERLNISYN 797
P + SL L+ LN+S+N
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 76/200 (38%), Gaps = 25/200 (12%)
Query: 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLF-QLKKLRIINFSHNKFS 560
+++ L NKLS F L++L L+ L +N + LP +F +LK L + + NK
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTEL 620
P+ + L NL+ LRL N L P F LT+L
Sbjct: 99 A--LPIGVFDQLV---------------------NLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG 680
+L L +N K L L L NN+L L E+ L L +N
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 681 TVPAEIGNCSKLLKLSLRGN 700
+ KL L L+ N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 12/171 (7%)
Query: 402 LSKLENLFLFDNMITGKIPVEIGK-LQTLSAIYLYDNQMSG---SIPRELTNCSGLTEID 457
L+KL L+L DN + +P I K L+ L +++ DN++ + +L N L E+
Sbjct: 60 LTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN---LAELR 115
Query: 458 FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL 517
N P L L L L N+L L+++ L +N+L
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 518 TFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFS----GSIY 564
F L+EL + L NN K + L+KL+++ N + G IY
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIY 226
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 190 SLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVL-LKSLQILNLANNSLSG 248
LDLQ NKLS L +A H +L+ ++N L+ T+P+ I LK+L+ L + +N L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98
Query: 249 SIPVEL-SHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKN 307
++P+ + L NL L L N P + L +L L L N L + +L +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 308 LETLVLSDN 316
L+ L L +N
Sbjct: 159 LKELRLYNN 167
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 2/180 (1%)
Query: 93 ETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEI-GFLNKLQVLRIGDNLLW 151
+ LDL SN L+ L PS+ +++ +P I L L+ L + DN L
Sbjct: 40 KKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 152 GEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
L L EL + QL P +L LT L L N+L L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFD 271
L++ NN L+ + L L+ L L NN L L L+ L L N +D
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 15/193 (7%)
Query: 609 NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEI 668
NIP++ KL DL N + + + KL L L++N+L T+P G +E+
Sbjct: 34 NIPADTKKL------DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPA--GIFKEL 84
Query: 669 GELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRN 724
L+ ++ N L +L L N L +PP + +LT L L+L N
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYN 143
Query: 725 SLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLG 784
L + L ELRL N +LTEL+ L L N +
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT-LKLDNNQLKRVPEGAFD 202
Query: 785 SLLKLERLNISYN 797
SL KL+ L + N
Sbjct: 203 SLEKLKMLQLQEN 215
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 3/180 (1%)
Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
+N+ ++D ++ + IPS + + +L L N L+ F +LT+L L L+ N
Sbjct: 15 NNNKNSVDCSSKKLTA-IPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGN 688
A + L L +++N+L L + EL L N P +
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 689 CSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSEN 748
+KL LSL N L LT+L L L N L + +L L+L N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 671 LDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNI 730
+D SS +P+ I +K KL L+ N LS LT L +L L N L
Sbjct: 21 VDCSSKKLTA-IPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77
Query: 731 PSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLE 790
++ K L L +++N +L L L L +N P SL KL
Sbjct: 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 791 RLNISYNQLQ 800
L++ YN+LQ
Sbjct: 137 YLSLGYNELQ 146
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645
IP +L N++ L L HN L P+ F + ++L LD FNS + ++ P+L + L
Sbjct: 19 IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSIS-KLEPELCQILPLL 75
Query: 646 HLL-LSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG 704
+L L +NEL+ + ELDL SN+ + N L+KL L N LS
Sbjct: 76 KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 120/315 (38%), Gaps = 56/315 (17%)
Query: 429 LSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS 488
++ + L NQ+ P T S L +D N S PE L L +L L+ N+LS
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 489 GPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKK 548
+ +C L ++ L N + + +N FK K
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHK----------------IKSNPFKNQ--------KN 122
Query: 549 LRIINFSHNKFSGS-----------IYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLS 597
L ++ SHN S + L N + AL F G + +L
Sbjct: 123 LIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLG--------NSSLR 174
Query: 598 RLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK--CAKLA-----HLLLS 650
+L L+ N L P F + +L L L+ Q+ P L++ C +L+ +L L+
Sbjct: 175 KLDLSSNPLKEFSPGCFQTIGKLFALLLN----NAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 651 NNELTGTIPFWLGSLQ--EIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPP 708
NN+L T L+ + +LDLS NN + L LSL NN+ P
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 709 EIGNLTALNVLNLQR 723
L+ L L+L+R
Sbjct: 291 SFYGLSNLRYLSLKR 305
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 668 IGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGN-LTALNVLNLQRNSL 726
I L+L+ N P S+L L N++S K+ PE+ L L VLNLQ N L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSIS-KLEPELCQILPLLKVLNLQHNEL 85
Query: 727 SGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG 777
S T C L EL L N I ++ + + + LDLS N S
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSI-HKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 103/274 (37%), Gaps = 40/274 (14%)
Query: 396 PPEIGNLSKLENLFLFD---NMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSG 452
PP N ++ L + D N I+ P L L + L N++S + C+
Sbjct: 41 PP--TNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTN 98
Query: 453 LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPAS------------------ 494
LTE+D N KNL+ L L N LS +
Sbjct: 99 LTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKIL 158
Query: 495 ---------LGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSL-F 544
LG L+++ L+ N L P F+ + +L+ + L N L L +
Sbjct: 159 ALRSEELEFLGNSS-LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCW 217
Query: 545 QLKKLRIINFS--HNKF---SGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRL 599
+L I N S +N+ S S + +LT LDL+ N+ + +L L
Sbjct: 218 ELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYL 277
Query: 600 RLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ 633
L +N++ P F L+ L +L L +FT Q
Sbjct: 278 SLEYNNIQRLSPRSFYGLSNLRYLSLK-RAFTKQ 310
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 9/231 (3%)
Query: 534 SFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMS 593
SFKG S F L+ ++ S N G L LD +++ + +S
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 594 -RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQL-SKCAKLAHLLLSN 651
RNL L ++H H F L+ L L ++ NSF P + ++ L L LS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 652 NELTGTIPFWLGSLQEIGELDLSSNNFNG--TVPAEIGNCSKLLKLSLRGNNLSGKIPPE 709
+L P SL + L++S NNF T P + N ++L SL N++ E
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL--NHIMTSKKQE 537
Query: 710 IGNL-TALNVLNLQRNSLSGNIP--STIQQCKKLYELRLSENFFTGSIPAD 757
+ + ++L LNL +N + S +Q K +L + + P+D
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 157 HIGNLT-----ELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
H+G+ + EL+ L ++ C++ +L HL++L L N + L A G
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL-SGSIPVELSHLFNLRYLNLLGNIF 270
LQK A L I LK+L+ LN+A+N + S +P S+L NL +L+L N
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 271 DGEIPSELNKLAQL 284
++L L Q+
Sbjct: 162 QSIYCTDLRVLHQM 175
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 178 IPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQ 237
+P L++LT LDL +L L P A + LQ S+N L SLQ
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 238 ILNLANNSLSGSIPVELSHL-FNLRYLNLLGNIF 270
+L+ + N + S EL H +L +LNL N F
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 90/226 (39%), Gaps = 33/226 (14%)
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN--SFTG 632
L+L N F G P+ L + ++L RL N GN SE L L FLDLS N SF G
Sbjct: 309 LELVNCKF-GQFPT-LKL-KSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLSRNGLSFKG 363
Query: 633 QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIG-NCSK 691
+ L +L LS N + +LG L+++ LD +N + +
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 692 LLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT 751
L+ L + + L++L VL + NS N F
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------------------FL 462
Query: 752 GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN 797
I +L LT LDLS+ P + SL L+ LN+S+N
Sbjct: 463 PDIFTELRNLT----FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 56/196 (28%), Positives = 78/196 (39%), Gaps = 4/196 (2%)
Query: 460 GNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADN-KLSGSVPLT 518
GN S + +NL IL L N L+G A+ L+Q+ L+DN +L P T
Sbjct: 40 GNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTT 99
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSG-SIYPLTGSNSLTALD 576
FR L L+ + L + L P LF+ L L+ + N +LT L
Sbjct: 100 FRGLGHLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLF 158
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
L N +L RL L NH+ P F L L L L N+ + A
Sbjct: 159 LHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAE 218
Query: 637 QLSKCAKLAHLLLSNN 652
L L +L L++N
Sbjct: 219 VLVPLRSLQYLRLNDN 234
Score = 36.6 bits (83), Expect = 0.071, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 71/180 (39%), Gaps = 1/180 (0%)
Query: 140 LQVLRIGDNLLWGEIPPHIGNLTELRELAIA-YCQLNGSIPVEIGNLKHLTSLDLQMNKL 198
L +L + N L G LT L +L ++ QL P L HL +L L L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 199 SGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLF 258
L P G LQ +N L+ ++ L +L L L N + L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLH 176
Query: 259 NLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAF 318
+L L L N P L +L L L NNLS + + L++L+ L L+DN +
Sbjct: 177 SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPW 236
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 50/213 (23%), Positives = 75/213 (35%), Gaps = 27/213 (12%)
Query: 539 LPPSLFQ-LKKLRIINFSHNKFSG-SIYPLTGSNSLTALDLTNNSFSGPI-PSELAMSRN 595
+P + FQ + L I+ N +G TG L LDL++N+ + P+ +
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 596 LSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELT 655
L L L L P F L L +L L N+ L HL L N +
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP 165
Query: 656 GTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTA 715
L + L L N+ P + +L+ L L NNLS +P E+
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEV----- 219
Query: 716 LNVLNLQRNSLSGNIPSTIQQCKKLYELRLSEN 748
+ + L LRL++N
Sbjct: 220 ------------------LVPLRSLQYLRLNDN 234
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 76/190 (40%), Gaps = 37/190 (19%)
Query: 86 FLNLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLRI 145
F LT LE LDLS N+ ++ +F G +G L+ L + R
Sbjct: 75 FTGLTLLEQLDLSDNAQLRVVDP---------------TTFRG-----LGHLHTLHLDRC 114
Query: 146 GDNLLWGEIPPHIGNLTELRELAIAYCQLNG--SIP----VEIGNLKHLTSLDLQMNKLS 199
G E+ P G L L Y Q N ++P ++GNL HL L N++
Sbjct: 115 G----LQELGP--GLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLF---LHGNRIP 165
Query: 200 GLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHLF 258
+ A G L + N + P + L L L L N+LS +P E L L
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLR 224
Query: 259 NLRYLNLLGN 268
+L+YL L N
Sbjct: 225 SLQYLRLNDN 234
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 65/168 (38%), Gaps = 3/168 (1%)
Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNN-MLEGTIPSSIVLLKSLQILNLANN 244
++LT L L N L+G+ A G L++ S+N L P++ L L L+L
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 245 SLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQ 304
L P L L+YL L N + L L L L N +
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 305 LKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELL 352
L +L+ L+L N P F + L L L N LS P E+L
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAF-RDLGRLMTLYLFANNLS-MLPAEVL 220
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 43/108 (39%)
Query: 402 LSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGN 461
L+ L+ L+L DN + L L+ ++L+ N++ L + N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 462 HFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADN 509
H + P L L+ L L N+LS L + LQ + L DN
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 158 IGNLTELRELAIAYCQLNGS--IPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKF 215
+ NL LREL +++ + S +++ NL HL SL+L N+ L EA C +L+
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 216 AASNNMLE-GTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIF-DGE 273
+ L+ S L L++LNL+++ L S L L++LNL GN F G
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465
Query: 274 I--PSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGS 321
I + L L +LE L LS +LS T LK + + LS N T S
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 111/278 (39%), Gaps = 17/278 (6%)
Query: 417 GKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKN 476
++P + L TL + L N+ +N LT + GN + + G L+N
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN--TKRLELGTGCLEN 348
Query: 477 LVILQLRQNDLSGPIPASLGYC-------KRLQQIALADNKLSGSVPLTFRFLSELYLIT 529
L LR+ DLS + C LQ + L+ N+ F+ +L L+
Sbjct: 349 LE--NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 530 LYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIYPL-TGSNSLTALDLTNNSFSGPIP 587
L K S FQ L L+++N SH+ S L G +L L+L N F
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466
Query: 588 SELAMSRNLSRLR---LAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKL 644
+ + L RL L+ L+ F L +N +DLS N T LS K
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH-LKG 525
Query: 645 AHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTV 682
+L L++N ++ +P L L + ++L N + T
Sbjct: 526 IYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 107/260 (41%), Gaps = 51/260 (19%)
Query: 446 ELTNCSGLT--EIDFFGNHFSGSI--------------PETMGKLKNLVILQLRQNDLSG 489
EL N + L EID + ++ +I P + L +L L +NDLS
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137
Query: 490 PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKG---PLPPSLFQL 546
+L +++++N L TF+ + L + L +N L PSLF
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH- 196
Query: 547 KKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFS---GPIPSELAMSRNLSRLRLAH 603
N S+N S P+ ++ LD ++NS + GP+ EL + L+L H
Sbjct: 197 -----ANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVNVELTI------LKLQH 241
Query: 604 NHLTG-----NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTI 658
N+LT N P L E+ DLS+N + K +L L +SNN L +
Sbjct: 242 NNLTDTAWLLNYPG----LVEV---DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 293
Query: 659 PFWLGSLQEIGELDLSSNNF 678
+ + + LDLS N+
Sbjct: 294 NLYGQPIPTLKVLDLSHNHL 313
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 179 PVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQI 238
P N+ LT L L+ N LS L H +L + SNN LE + SLQ
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175
Query: 239 LNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSI 298
L L++N L+ V+LS + +L + N+ N+ S L +EELD S N+++
Sbjct: 176 LQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVR 227
Query: 299 SLLNTQLK--NLETLVLSDNAFTGSIP 323
+N +L L+ L+D A+ + P
Sbjct: 228 GPVNVELTILKLQHNNLTDTAWLLNYP 254
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 135 GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLD 192
+ + +Q L +G N + +PPH+ N+ L L + L S+P I N LT+L
Sbjct: 96 AYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLS 153
Query: 193 LQMNKLSGLIPEAIHGCEELQKFAASNNMLEGT----IPS------SIVLLKSLQI---- 238
+ N L + + LQ S+N L IPS S LL +L I
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 213
Query: 239 --LNLANNSLS---GSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNN 293
L+ ++NS++ G + VEL+ + L++ NL + P L E+DLS N
Sbjct: 214 EELDASHNSINVVRGPVNVELT-ILKLQHNNLTDTAWLLNYPG-------LVEVDLSYNE 265
Query: 294 LSGSISLLNTQLKNLETLVLSDNAFTG 320
L + +++ LE L +S+N
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVA 292
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 9/231 (3%)
Query: 534 SFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMS 593
SFKG S F L+ ++ S N G L LD +++ + +S
Sbjct: 384 SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443
Query: 594 -RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQL-SKCAKLAHLLLSN 651
RNL L ++H H F L+ L L ++ NSF P + ++ L L LS
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 652 NELTGTIPFWLGSLQEIGELDLSSNNFNG--TVPAEIGNCSKLLKLSLRGNNLSGKIPPE 709
+L P SL + L++S NNF T P + N ++L SL N++ E
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL--NHIMTSKKQE 561
Query: 710 IGNL-TALNVLNLQRNSLSGNIP--STIQQCKKLYELRLSENFFTGSIPAD 757
+ + ++L LNL +N + S +Q K +L + + P+D
Sbjct: 562 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 612
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 157 HIGNLT-----ELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
H+G+ + EL+ L ++ C++ +L HL++L L N + L A G
Sbjct: 66 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125
Query: 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL-SGSIPVELSHLFNLRYLNLLGNIF 270
LQK A L I LK+L+ LN+A+N + S +P S+L NL +L+L N
Sbjct: 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Query: 271 DGEIPSELNKLAQL 284
++L L Q+
Sbjct: 186 QSIYCTDLRVLHQM 199
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 178 IPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQ 237
+P L++LT LDL +L L P A + LQ S+N L SLQ
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 238 ILNLANNSLSGSIPVELSHL-FNLRYLNLLGNIF 270
+L+ + N + S EL H +L +LNL N F
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 90/226 (39%), Gaps = 33/226 (14%)
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN--SFTG 632
L+L N F G P+ L + ++L RL N GN SE L L FLDLS N SF G
Sbjct: 333 LELVNCKF-GQFPT-LKL-KSLKRLTFTSNK-GGNAFSEV-DLPSLEFLDLSRNGLSFKG 387
Query: 633 QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIG-NCSK 691
+ L +L LS N + +LG L+++ LD +N + +
Sbjct: 388 CCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRN 446
Query: 692 LLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT 751
L+ L + + L++L VL + NS N F
Sbjct: 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------------------FL 486
Query: 752 GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN 797
I +L LT LDLS+ P + SL L+ LN+S+N
Sbjct: 487 PDIFTELRNLT----FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 107/260 (41%), Gaps = 51/260 (19%)
Query: 446 ELTNCSGLT--EIDFFGNHFSGSI--------------PETMGKLKNLVILQLRQNDLSG 489
EL N + L EID + ++ +I P + L +L L +NDLS
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 490 PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKG---PLPPSLFQL 546
+L +++++N L TF+ + L + L +N L PSLF
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH- 190
Query: 547 KKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFS---GPIPSELAMSRNLSRLRLAH 603
N S+N S P+ ++ LD ++NS + GP+ EL + L+L H
Sbjct: 191 -----ANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVNVELTI------LKLQH 235
Query: 604 NHLTG-----NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTI 658
N+LT N P L E+ DLS+N + K +L L +SNN L +
Sbjct: 236 NNLTDTAWLLNYPG----LVEV---DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 287
Query: 659 PFWLGSLQEIGELDLSSNNF 678
+ + + LDLS N+
Sbjct: 288 NLYGQPIPTLKVLDLSHNHL 307
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 14/165 (8%)
Query: 179 PVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQI 238
P N+ LT L L+ N LS L H +L + SNN LE + SLQ
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169
Query: 239 LNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSI 298
L L++N L+ V+LS + +L + N+ N+ S L +EELD S N+++
Sbjct: 170 LQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVR 221
Query: 299 SLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKL 343
+N +L L L N T + + LN L ++ L+ N+L
Sbjct: 222 GPVNVELT---ILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL 260
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 135 GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLD 192
+ + +Q L +G N + +PPH+ N+ L L + L S+P I N LT+L
Sbjct: 90 AYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLS 147
Query: 193 LQMNKLSGLIPEAIHGCEELQKFAASNNMLEGT----IPS------SIVLLKSLQI---- 238
+ N L + + LQ S+N L IPS S LL +L I
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207
Query: 239 --LNLANNSLS---GSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNN 293
L+ ++NS++ G + VEL+ + L++ NL + P L E+DLS N
Sbjct: 208 EELDASHNSINVVRGPVNVELT-ILKLQHNNLTDTAWLLNYPG-------LVEVDLSYNE 259
Query: 294 LSGSISLLNTQLKNLETLVLSDNAFTG 320
L + +++ LE L +S+N
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVA 286
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 26/299 (8%)
Query: 398 EIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID 457
E + LE L L +N+++ P L L + L N++ T S LT++D
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110
Query: 458 FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL 517
N + L NL L++ NDL + L+Q+ L L+
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 518 TFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDL 577
L L ++ L + + S +L +L+++ SH + ++ P N L L+L
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP----NCLYGLNL 226
Query: 578 TNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ 637
T+ L + H +LT L L FL+LS+N +
Sbjct: 227 TS-------------------LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267
Query: 638 LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG---TVPAEIGNCSKLL 693
L + +L + L +L P+ L + L++S N +V +GN L+
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 116/294 (39%), Gaps = 27/294 (9%)
Query: 469 ETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKL--------SGSVPLTFR 520
+ +L L+L +N +S P + L+ + L N+L +G LT
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 521 FLSELYLITLYNNSFKGPLPPSLFQLKKLRI-----INFSHNKFSGSIYPLTGSNSLTAL 575
+SE ++ L + F+ L+ LK L + + SH FSG NSL L
Sbjct: 110 DISENKIVILLDYMFQ-----DLYNLKSLEVGDNDLVYISHRAFSGL-------NSLEQL 157
Query: 576 DLTNNSFSGPIPSE-LAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQI 634
L + + IP+E L+ L LRL H ++ F +L L L++S + +
Sbjct: 158 TLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216
Query: 635 APQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLK 694
P L L +++ LT + L + L+LS N + + + +L +
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276
Query: 695 LSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSEN 748
+ L G L+ P L L VLN+ N L+ S L L L N
Sbjct: 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 236 LQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLS 295
L+ L L N +S P ++LFNLR L L N L+ L +LD+S+N +
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 296 GSISLLNTQLKNLETLVLSDN--------AFTGSIPIKFCLNNSSLQQLILARNKLSGEF 347
+ + L NL++L + DN AF+G LN SL+QL L + L+
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG-------LN--SLEQLTLEKCNLTS-I 167
Query: 348 PLELL 352
P E L
Sbjct: 168 PTEAL 172
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 137 LNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVE-IGNLKHLTSLDLQM 195
L L+ L +GDN L L L +L + C L SIP E + +L L L L+
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185
Query: 196 NKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELS 255
++ + + L+ S+ T+ + + +L L++ + +L+ + +
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245
Query: 256 HLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLS----------GSISLLNTQ- 304
HL LR+LNL N S L++L +L+E+ L L+ + +LN
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 305 -------------LKNLETLVLSDN 316
+ NLETL+L N
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSN 330
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 682 VPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY 741
+ A I L +L L GN+L+ ++P EI NL+ L VL+L N L+ ++P+ + C +L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
Query: 742 ELRLSENFFTGSIPADLGRLTELQVI 767
+N T ++P + G L LQ +
Sbjct: 297 YFYFFDNMVT-TLPWEFGNLCNLQFL 321
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 174 LNGS----IPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSS 229
LNG+ +P EI NL +L LDL N+L+ L P + C +L+ F +NM+ T+P
Sbjct: 254 LNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMV-TTLPWE 311
Query: 230 IVLLKSLQILNLANNSL 246
L +LQ L + N L
Sbjct: 312 FGNLCNLQFLGVEGNPL 328
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 396 PPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTE 455
P EI NLS L L L N +T +P E+G L Y +DN M ++P E N L
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQF 320
Query: 456 IDFFGNHFSGSIPETMG-KLKNLVILQLRQNDLSGPIP 492
+ GN + + K +I LR N P+P
Sbjct: 321 LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 28/133 (21%)
Query: 574 ALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ 633
ALDL+N I + + L+RL L N LT +P+E L+ L LDLS N T
Sbjct: 228 ALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS- 284
Query: 634 IAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL 693
+ +L C +L + +N +T T+P E GN L
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVT-------------------------TLPWEFGNLCNLQ 319
Query: 694 KLSLRGNNLSGKI 706
L + GN L +
Sbjct: 320 FLGVEGNPLEKQF 332
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 29/118 (24%)
Query: 517 LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALD 576
+ FL+ LYL N + LP + L LR+++ SHN+ +
Sbjct: 244 FKYDFLTRLYL----NGNSLTELPAEIKNLSNLRVLDLSHNRLTS--------------- 284
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQI 634
+P+EL L N +T +P EFG L L FL + N Q
Sbjct: 285 ---------LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 453 LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLS 512
LT + GN + +P + L NL +L L N L+ +PA LG C +L+ DN ++
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 513 GSVPLTFRFLSELYLITLYNN 533
++P F L L + + N
Sbjct: 307 -TLPWEFGNLCNLQFLGVEGN 326
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 394 SFPPEIGNLSKLENLFLFDNMITGKIPVEIGKL 426
S P E+G+ +L+ + FDNM+T +P E G L
Sbjct: 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNL 315
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 233 LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKN 292
L +LQI N++ N L YLN GN E+P+E+ L+ L LDLS N
Sbjct: 231 LSNLQIFNISANIFKYDFLTRL-------YLN--GNSL-TELPAEIKNLSNLRVLDLSHN 280
Query: 293 NLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEF 347
L+ + L + + L+ DN T ++P +F N +LQ L + N L +F
Sbjct: 281 RLTSLPAELGSCFQ-LKYFYFFDNMVT-TLPWEFG-NLCNLQFLGVEGNPLEKQF 332
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 157 HIGNLT-----ELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
H+G+ + EL+ L ++ C++ +L HL++L L N + L A G
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL-SGSIPVELSHLFNLRYLNLLGNIF 270
LQK A L I LK+L+ LN+A+N + S +P S+L NL +L+L N
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 271 DGEIPSELNKLAQL 284
++L L Q+
Sbjct: 162 QSIYCTDLRVLHQM 175
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 451 SGLTEIDFFGNHFSGS-IPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADN 509
S L + GN F + +P+ +L+NL L L Q L P + LQ + +A N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 510 KLSGSVPLTFRFLSELYLITLYNNSFKGPLP 540
+L F L+ L I L+ N + P
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 92/233 (39%), Gaps = 34/233 (14%)
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN--SFTG 632
L+L N F G P+ ++L RL N GN SE L L FLDLS N SF G
Sbjct: 309 LELVNCKF-GQFPT--LKLKSLKRLTFTSNK-GGNAFSEV-DLPSLEFLDLSRNGLSFKG 363
Query: 633 QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIG-NCSK 691
+ L +L LS N + +LG L+++ LD +N + +
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 692 LLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT 751
L+ L + + L++L VL + NS N F
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------------------FL 462
Query: 752 GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP 804
I +L LT LDLS+ P + SL L+ LN++ NQL+ VP
Sbjct: 463 PDIFTELRNLT----FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VP 510
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 157 HIGNLT-----ELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
H+G+ + EL+ L ++ C++ +L HL++L L N + L A G
Sbjct: 43 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 102
Query: 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL-SGSIPVELSHLFNLRYLNLLGNIF 270
LQK A L I LK+L+ LN+A+N + S +P S+L NL +L+L N
Sbjct: 103 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 271 DGEIPSELNKLAQL 284
++L L Q+
Sbjct: 163 QSIYCTDLRVLHQM 176
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 157 HIGNLT-----ELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
H+G+ + EL+ L ++ C++ +L HL++L L N + L A G
Sbjct: 44 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 103
Query: 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL-SGSIPVELSHLFNLRYLNLLGNIF 270
LQK A L I LK+L+ LN+A+N + S +P S+L NL +L+L N
Sbjct: 104 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 271 DGEIPSELNKLAQL 284
++L L Q+
Sbjct: 164 QSIYCTDLRVLHQM 177
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 157 HIGNLT-----ELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
H+G+ + EL+ L ++ C++ +L HL++L L N + L A G
Sbjct: 43 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 102
Query: 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL-SGSIPVELSHLFNLRYLNLLGNIF 270
LQK A L I LK+L+ LN+A+N + S +P S+L NL +L+L N
Sbjct: 103 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 271 DGEIPSELNKLAQL 284
++L L Q+
Sbjct: 163 QSIYCTDLRVLHQM 176
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 157 HIGNLT-----ELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
H+G+ + EL+ L ++ C++ +L HL++L L N + L A G
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL-SGSIPVELSHLFNLRYLNLLGNIF 270
LQK A L I LK+L+ LN+A+N + S +P S+L NL +L+L N
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 271 DGEIPSELNKLAQL 284
++L L Q+
Sbjct: 162 QSIYCTDLRVLHQM 175
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 185 LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
LK L L+L NK++ + EA +G + LQ S N+L S+ L + ++L N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 245 SLSGSIPVELSHLFNLRYLNLLGNI-----FDGEIPSEL---NKLAQLEELDLSKNNLSG 296
++ L L+ L+L N F IP NKL L +++L+ N +
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408
Query: 297 SISLLNT--------QLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFP 348
S + L ++ +L+ L+L+ N F+ + N SL+QL L N L +
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468
Query: 349 LEL 351
EL
Sbjct: 469 TEL 471
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 137/562 (24%), Positives = 208/562 (37%), Gaps = 94/562 (16%)
Query: 137 LNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVE--IGNLKHLTSLDLQ 194
L L++L +G + ++ P L L EL + +C L+ ++ + NLK LT LDL
Sbjct: 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131
Query: 195 MNKLSGLIPEAIHG-CEELQKFAASNNMLEGTIPSSIVLL--KSLQILNLANNSLSGSIP 251
N++ L G L+ S+N + + L K+L +LA NSL +
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 252 VELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETL 311
V+ N + N++ LE LD+S N + I+ N
Sbjct: 192 VDWGKCMN-PFRNMV-----------------LEILDVSGNGWTVDIT------GNFSNA 227
Query: 312 VLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCXXXXXXXXXXNSFKGEL 371
+ AF+ LILA + + F ++ N+F G L
Sbjct: 228 ISKSQAFS----------------LILAHHIMGAGFGFHNIK-------DPDQNTFAG-L 263
Query: 372 PRSXXXXXXXXXXXXXXXSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSA 431
RS S + +L L + N I + + LQ L+
Sbjct: 264 ARS--SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 432 IY-----LYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQND 486
Y LY + G +P+ + ID NH + +T L+ L L LR N
Sbjct: 322 SYNLLGELYSSNFYG-LPK-------VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373
Query: 487 LSGPIPASLGYCKRLQQIALADNKLSG--SVPLTFRFLSELYLITLYNNSFKG-PLPPSL 543
L+ ++ + + I L+ NKL + LT LI L N + + L
Sbjct: 374 LT-----TIHFIPSIPDIFLSGNKLVTLPKINLTAN------LIHLSENRLENLDILYFL 422
Query: 544 FQLKKLRIINFSHNKFSGSIYPLTGSN--SLTALDLTNNSFSGPIPSELAMS-----RNL 596
++ L+I+ + N+FS T S SL L L N +EL +L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482
Query: 597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTG 656
L L HN+L P F LT L L L+ N T L A L L +S N+L
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA 540
Query: 657 TIPFWLGSLQEIGELDLSSNNF 678
P SL LD++ N F
Sbjct: 541 PNPDVFVSL---SVLDITHNKF 559
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 712 NLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL--GRLTELQVI-- 767
NL L +L+L + + P Q L+ELRL +F G A L G L+ +
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL---YFCGLSDAVLKDGYFRNLKALTR 127
Query: 768 LDLSKNNF-SGEIPPSLGSLLKLERLNISYNQL 799
LDLSKN S + PS G L L+ ++ S NQ+
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 120/307 (39%), Gaps = 40/307 (13%)
Query: 429 LSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS 488
++ + L NQ+ T S LT +D N S PE KL L +L L+ N+LS
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 489 GPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKK 548
+ +C L ++ L N + + NN F + K
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQK----------------IKNNPF--------VKQKN 132
Query: 549 LRIINFSHNKFSGS-IYPLTGSNSLTALDLTNNSFSGPIPSELAMSRN--LSRLRLAHNH 605
L ++ SHN S + + +L L L+NN EL + N L +L L+ N
Sbjct: 133 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 192
Query: 606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK--CAKLA-----HLLLSNNELTGT- 657
+ P F + L L L+ Q+ P L++ C +LA +L LSN++L+ T
Sbjct: 193 IKEFSPGCFHAIGRLFGLFLN----NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 248
Query: 658 -IPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL 716
F + LDLS NN N +L L NN+ + L +
Sbjct: 249 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 308
Query: 717 NVLNLQR 723
LNL+R
Sbjct: 309 RYLNLKR 315
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 96/236 (40%), Gaps = 36/236 (15%)
Query: 501 LQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKF 559
L + L NK+S F +L L ++ L N L ++ L+ + I S+NK+
Sbjct: 393 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 452
Query: 560 SGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHL--TGNIPSEFGKL 617
L LT NSF A+ +L RL L L + PS F L
Sbjct: 453 ---------------LQLTRNSF--------ALVPSLQRLMLRRVALKNVDSSPSPFQPL 489
Query: 618 TELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELT--------GTIPFWLGSLQEIG 669
L LDLS N+ L KL L L +N L G ++L L +
Sbjct: 490 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 549
Query: 670 ELDLSSNNFNGTVPAEI-GNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN 724
L+L SN F+ +P E+ + +L + L NNL+ N +L LNLQ+N
Sbjct: 550 ILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645
+P +L N++ L L HN L + F + ++L LD+ FN+ + ++ P+L C KL
Sbjct: 29 VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPEL--CQKLP 83
Query: 646 HLL---LSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNL 702
L L +NEL+ + EL L SN+ L+ L L N L
Sbjct: 84 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 143
Query: 703 SG 704
S
Sbjct: 144 SS 145
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 20/110 (18%)
Query: 221 MLEGTIPSSIVLLKSLQILNLANNSLS--------GSIPVELSHLFNLRYLNLLGNIFDG 272
MLEG L+ L+IL+L +N+L+ G L L +L LNL N FD
Sbjct: 509 MLEG--------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD- 559
Query: 273 EIPSELNK-LAQLEELDLSKNNLSG-SISLLNTQLKNLETLVLSDNAFTG 320
EIP E+ K L +L+ +DL NNL+ S+ N Q+ +L++L L N T
Sbjct: 560 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV-SLKSLNLQKNLITS 608
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 178 IPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQ 237
+P E+ N KHLT +DL N++S L ++ +L S N L P + LKSL+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 238 ILNLANNSLS 247
+L+L N +S
Sbjct: 106 LLSLHGNDIS 115
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 424 GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLR 483
G + ++ +YL NQ + +P+EL+N LT ID N S ++ + L+ L L
Sbjct: 28 GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 484 QNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSEL 525
N L P + K L+ ++L N +S F LS L
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Query: 591 AMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLS 650
+ R+++ L L N T +P E L +DLS N + S +L L+LS
Sbjct: 28 GIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 651 NNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNL 702
N L P L+ + L L N+ + + S L L++ N L
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 408 LFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSI 467
L+L N T +P E+ + L+ I L +N++S + +N + L + N
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 468 PETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKL 511
P T LK+L +L L ND+S + L +A+ N L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 120/307 (39%), Gaps = 40/307 (13%)
Query: 429 LSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS 488
++ + L NQ+ T S LT +D N S PE KL L +L L+ N+LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 489 GPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKK 548
+ +C L ++ L N + + NN F + K
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQK----------------IKNNPF--------VKQKN 122
Query: 549 LRIINFSHNKFSGS-IYPLTGSNSLTALDLTNNSFSGPIPSELAMSRN--LSRLRLAHNH 605
L ++ SHN S + + +L L L+NN EL + N L +L L+ N
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Query: 606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK--CAKLA-----HLLLSNNELTGT- 657
+ P F + L L L+ Q+ P L++ C +LA +L LSN++L+ T
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLN----NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 658 -IPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL 716
F + LDLS NN N +L L NN+ + L +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 717 NVLNLQR 723
LNL+R
Sbjct: 299 RYLNLKR 305
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 69/161 (42%), Gaps = 20/161 (12%)
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHL--TGNIPSEFGKLTELNFLDLSFNSFTG 632
L LT NSF A+ +L RL L L + PS F L L LDLS N+
Sbjct: 443 LQLTRNSF--------ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494
Query: 633 QIAPQLSKCAKLAHLLLSNNELT--------GTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
L KL L L +N L G ++L L + L+L SN F+ +P
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPV 553
Query: 685 EI-GNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN 724
E+ + +L + L NNL+ N +L LNLQ+N
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645
+P +L N++ L L HN L + F + ++L LD+ FN+ + ++ P+L C KL
Sbjct: 19 VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPEL--CQKLP 73
Query: 646 HLL---LSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNL 702
L L +NEL+ + EL L SN+ L+ L L N L
Sbjct: 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Query: 703 SG 704
S
Sbjct: 134 SS 135
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 20/110 (18%)
Query: 221 MLEGTIPSSIVLLKSLQILNLANNSLS--------GSIPVELSHLFNLRYLNLLGNIFDG 272
MLEG L+ L+IL+L +N+L+ G L L +L LNL N FD
Sbjct: 499 MLEG--------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD- 549
Query: 273 EIPSELNK-LAQLEELDLSKNNLSG-SISLLNTQLKNLETLVLSDNAFTG 320
EIP E+ K L +L+ +DL NNL+ S+ N Q+ +L++L L N T
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV-SLKSLNLQKNLITS 598
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 157 HIGNLT-----ELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
H+G+ + EL+ L ++ C++ +L HL++L L N + L A G
Sbjct: 44 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 103
Query: 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL-SGSIPVELSHLFNLRYLNLLGNIF 270
LQK A L I LK+L+ LN+A+N + S +P S+L NL +L+L N
Sbjct: 104 LQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 271 DGEIPSELNKLAQL 284
++L L Q+
Sbjct: 164 QSIYCTDLRVLHQM 177
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 120/307 (39%), Gaps = 40/307 (13%)
Query: 429 LSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS 488
++ + L NQ+ T S LT +D N S PE KL L +L L+ N+LS
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 489 GPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKK 548
+ +C L ++ L N + + NN F + K
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQK----------------IKNNPF--------VKQKN 127
Query: 549 LRIINFSHNKFSGS-IYPLTGSNSLTALDLTNNSFSGPIPSELAMSRN--LSRLRLAHNH 605
L ++ SHN S + + +L L L+NN EL + N L +L L+ N
Sbjct: 128 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 187
Query: 606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK--CAKLA-----HLLLSNNELTGT- 657
+ P F + L L L+ Q+ P L++ C +LA +L LSN++L+ T
Sbjct: 188 IKEFSPGCFHAIGRLFGLFLN----NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 243
Query: 658 -IPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL 716
F + LDLS NN N +L L NN+ + L +
Sbjct: 244 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 303
Query: 717 NVLNLQR 723
LNL+R
Sbjct: 304 RYLNLKR 310
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 69/161 (42%), Gaps = 20/161 (12%)
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHL--TGNIPSEFGKLTELNFLDLSFNSFTG 632
L LT NSF A+ +L RL L L + PS F L L LDLS N+
Sbjct: 448 LQLTRNSF--------ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 499
Query: 633 QIAPQLSKCAKLAHLLLSNNELT--------GTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
L KL L L +N L G ++L L + L+L SN F+ +P
Sbjct: 500 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPV 558
Query: 685 EI-GNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN 724
E+ + +L + L NNL+ N +L LNLQ+N
Sbjct: 559 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645
+P +L N++ L L HN L + F + ++L LD+ FN+ + ++ P+L C KL
Sbjct: 24 VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPEL--CQKLP 78
Query: 646 HLL---LSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNL 702
L L +NEL+ + EL L SN+ L+ L L N L
Sbjct: 79 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 138
Query: 703 SG 704
S
Sbjct: 139 SS 140
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 20/110 (18%)
Query: 221 MLEGTIPSSIVLLKSLQILNLANNSLS--------GSIPVELSHLFNLRYLNLLGNIFDG 272
MLEG L+ L+IL+L +N+L+ G L L +L LNL N FD
Sbjct: 504 MLEG--------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD- 554
Query: 273 EIPSELNK-LAQLEELDLSKNNLSG-SISLLNTQLKNLETLVLSDNAFTG 320
EIP E+ K L +L+ +DL NNL+ S+ N Q+ +L++L L N T
Sbjct: 555 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV-SLKSLNLQKNLITS 603
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 135 GFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDL 193
G Q+L + DN + P +L L+EL + QL G++PV + +L LT LDL
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL 95
Query: 194 QMNKLSGLIPEAIHG----CEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGS 249
N+L+ ++P A+ +EL F N + E +P I L L L L N L S
Sbjct: 96 GTNQLT-VLPSAVFDRLVHLKEL--FMCCNKLTE--LPRGIERLTHLTHLALDQNQLK-S 149
Query: 250 IPV-ELSHLFNLRYLNLLGNIFDGE 273
IP L +L + L GN +D E
Sbjct: 150 IPHGAFDRLSSLTHAYLFGNPWDCE 174
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 595 NLSRLRLAHNHLTGNIP-SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNE 653
NL L L N L G +P F LT+L LDL N T + + L L + N+
Sbjct: 65 NLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123
Query: 654 LTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN 700
LT +P + L + L L N S L L GN
Sbjct: 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Query: 408 LFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC-SGLTEIDFFGNHFSGS 466
L+L DN IT P L L +YL NQ+ G++P + + + LT +D N +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 467 IPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELY 526
+L +L L + N L+ +P + L +AL N+L F LS L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 527 LITLYNNSF 535
L+ N +
Sbjct: 163 HAYLFGNPW 171
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 224 GTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIP-SELNKLA 282
++P+ I + QIL L +N ++ P L NL+ L L N G +P + L
Sbjct: 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 283 QLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFT 319
QL LDL N L+ S + +L +L+ L + N T
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 432 IYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIP-ETMGKLKNLVILQLRQNDLSGP 490
+YL+DNQ++ P + L E+ + G++ G++P L L +L L N L+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKEL-YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 491 IPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLR 550
A L+++ + NKL+ +P L+ L + L N K +P F R
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFD----R 157
Query: 551 IINFSHNKFSGS 562
+ + +H G+
Sbjct: 158 LSSLTHAYLFGN 169
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 158 IGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAA 217
+GNL L +L+ + + +++ NL HL +L+L N+ GL +A C +L+
Sbjct: 346 LGNLQTL-DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDL 404
Query: 218 SNNMLEGTIPSS-IVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIF-DGEIP 275
+ L P S L LQ+LNL L S L+ L LR+LNL GN F DG I
Sbjct: 405 AFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTIT 464
Query: 276 SE--LNKLAQLEELDLS 290
L + LE L LS
Sbjct: 465 KTNLLQTVGSLEVLILS 481
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 657 TIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL 716
T WLG+ ++I + D+SS G + + L+L+ + S T L
Sbjct: 224 TQSLWLGTFEDIDDEDISSAMLKGLCEMSVES------LNLQEHRFSDISSTTFQCFTQL 277
Query: 717 NVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSI---PADLGRLTELQVILDLSKN 773
L+L L G +PS ++ L +L LS N F A+ LT L + ++ K
Sbjct: 278 QELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKL 336
Query: 774 NFSGEIPPSLGSLLKLERLNISYNQLQGQVPASL 807
+ LG+ L+ L++S+N ++ SL
Sbjct: 337 HLGVGCLEKLGN---LQTLDLSHNDIEASDCCSL 367
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 158 IGNLTELRELAIAYCQLNGSIPVEIG---NLKHLTSLDLQMNKLSGLIPEAIHGCEELQK 214
+ + LR L I N +EIG L +L +L+L N+L+ + A +L++
Sbjct: 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140
Query: 215 FAASNNMLEGTIPSSIVLLKSLQILNLAN-NSLSGSIPVELSHLFNLRYLNL-LGNIFDG 272
NN +E + + SL+ L+L LS L NLRYLNL + N+
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--R 198
Query: 273 EIPSELNKLAQLEELDLSKNNLSG 296
EIP+ L L +L+ELDLS N+LS
Sbjct: 199 EIPN-LTPLIKLDELDLSGNHLSA 221
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 161 LTELRELAIAYCQLNGSIPVEIGNLK---HLTSLDLQMNKLSGLIPEAIHGCEELQKFAA 217
L+ LR L +A C L EI NL L LDL N LS + P + G LQK
Sbjct: 184 LSNLRYLNLAMCNLR-----EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 218 SNNMLEGTIPSSIVLLKSLQILNLANNSLS 247
+ ++ ++ L+SL +NLA+N+L+
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
LDLQ L+ L G +L N L+ L L L LANN L+ S+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98
Query: 251 PVEL-SHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLE 309
P+ + HL L L L GN ++L +L+EL L+ N L + +L NL+
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 310 TLVLSDNAFTGSIP 323
TL LS N S+P
Sbjct: 159 TLSLSTNQLQ-SVP 171
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 8/171 (4%)
Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645
+PS + + +L L L + F LT+L +L+L +N A +L
Sbjct: 29 VPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 646 HLLLSNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNL 702
L L+NN+L ++P LG + +LD L N +KL +L L N L
Sbjct: 87 TLGLANNQL-ASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 703 SGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGS 753
LT L L+L N L + KL + L N F S
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 19/130 (14%)
Query: 421 VEIGKLQTLSA-----------IYLYDNQMSGSIPRELTNCSGLTEID--FFGNHFSGSI 467
++ +LQTLSA + L +NQ++ S+P L LT++D + G + S+
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLP--LGVFDHLTQLDKLYLGGNQLKSL 122
Query: 468 PE-TMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL-TFRFLSEL 525
P +L L L+L N L + LQ ++L+ N+L SVP F L +L
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKL 181
Query: 526 YLITLYNNSF 535
ITL+ N F
Sbjct: 182 QTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
LDLQ L+ L G +L N L+ L L L LANN L+ S+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98
Query: 251 PVEL-SHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLE 309
P+ + HL L L L GN ++L +L+EL L+ N L + +L NL+
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 310 TLVLSDNAFTGSIP 323
TL LS N S+P
Sbjct: 159 TLSLSTNQLQ-SVP 171
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 8/171 (4%)
Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645
+PS + + +L L L + F LT+L +L+L +N A +L
Sbjct: 29 VPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 646 HLLLSNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNL 702
L L+NN+L ++P LG + +LD L N +KL +L L N L
Sbjct: 87 TLGLANNQL-ASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 703 SGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGS 753
LT L L+L N L + KL + L N F S
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 421 VEIGKLQTLSA-----------IYLYDNQMSGSIPRELTNCSGLTEID--FFGNHFSGSI 467
++ +LQTLSA + L +NQ++ S+P L LT++D + G + S+
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLP--LGVFDHLTQLDKLYLGGNQLKSL 122
Query: 468 PE-TMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL-TFRFLSEL 525
P +L L L+L N L + LQ ++L+ N+L SVP F L +L
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKL 181
Query: 526 YLITLYNNSFKGPLPPSLF 544
ITL+ N F +L+
Sbjct: 182 QTITLFGNQFDCSRCETLY 200
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 42/203 (20%)
Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC-----QLNGSIPVEIGN 184
+PP++ +L + +NLL+ + T L +L + C Q++G++PV
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV---- 78
Query: 185 LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
L +LDL N+L L +L T+P+ L +L+++ N
Sbjct: 79 ---LGTLDLSHNQLQSL------------------PLLGQTLPA-------LTVLDVSFN 110
Query: 245 SLSGSIPV-ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
L+ S+P+ L L L+ L L GN P L +LE+L L+ NNL+ + L
Sbjct: 111 RLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 304 QLKNLETLVLSDNAFTGSIPIKF 326
L+NL+TL+L +N+ +IP F
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGF 191
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-----GQIAPQLSKCAKLAHLLL 649
NL R L + G +P L LDLS N GQ P L+ L +
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTV------LDV 107
Query: 650 SNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
S N LT ++P LG+L+ +GEL L N P + KL KLSL NNL+
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 707 PPEIGNLTALNVLNLQRNSL 726
+ L L+ L LQ NSL
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 42/203 (20%)
Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC-----QLNGSIPVEIGN 184
+PP++ +L + +NLL+ + T L +L + C Q++G++PV
Sbjct: 26 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV---- 79
Query: 185 LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
L +LDL N+L L +L T+P+ L +L+++ N
Sbjct: 80 ---LGTLDLSHNQLQSL------------------PLLGQTLPA-------LTVLDVSFN 111
Query: 245 SLSGSIPV-ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
L+ S+P+ L L L+ L L GN P L +LE+L L+ NNL+ + L
Sbjct: 112 RLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 170
Query: 304 QLKNLETLVLSDNAFTGSIPIKF 326
L+NL+TL+L +N+ +IP F
Sbjct: 171 GLENLDTLLLQENSLY-TIPKGF 192
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-----GQIAPQLSKCAKLAHLLL 649
NL R L + G +P L LDLS N GQ P L+ L +
Sbjct: 62 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTV------LDV 108
Query: 650 SNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
S N LT ++P LG+L+ +GEL L N P + KL KLSL NNL+
Sbjct: 109 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 165
Query: 707 PPEIGNLTALNVLNLQRNSL 726
+ L L+ L LQ NSL
Sbjct: 166 AGLLNGLENLDTLLLQENSL 185
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 136/349 (38%), Gaps = 49/349 (14%)
Query: 470 TMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLT--FRFLSELYL 527
T L +L+IL+L N + L+ + L L G+V F+ L+ L +
Sbjct: 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
Query: 528 ITLYNNSFKGPLPPSLF-QLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPI 586
+ L +N+ K P S F +++ +++ + NK S+ DL N F G
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK----------SICEEDLLN--FQG-- 179
Query: 587 PSELAMSRNLSRLRLAHNHLTGNIPSEFG--------KLTELNFLDLSFNSFTGQIAPQL 638
++ + LRL+ L G K T + LDLS N F +A +
Sbjct: 180 -------KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232
Query: 639 SKC---AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
K+ L+LSN+ G+ S D + F G + + C
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGS------SFGHTNFKDPDNFTFKGLEASGVKTCD----- 281
Query: 696 SLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP 755
L + + + + T L L L +N ++ + L +L LS+NF GSI
Sbjct: 282 -LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 756 ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP 804
+ + + +LDLS N+ S L L+ L + NQL+ VP
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VP 387
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 25/159 (15%)
Query: 187 HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL 246
H+ +DL +N ++ L + ++LQ +E P ++ NN+
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLK-----VEQQTPGLVI----------RNNTF 75
Query: 247 SGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN--TQ 304
G + + L ++L L F+G LA LE L L++ NL G++ N
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNG--------LANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 305 LKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKL 343
L +LE LVL DN P F LN L L NK+
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 38/177 (21%)
Query: 598 RLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGT 657
L ++N LT + G LTEL L L N QL + +K+A E+T
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMN--------QLKELSKIA-------EMTT- 371
Query: 658 IPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCS---KLLKLSLRGNNLSGKI----PPEI 710
++ + +LD+S N+ + + G+CS LL L++ N L+ I PP I
Sbjct: 372 ------QMKSLQQLDISQNSV--SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI 423
Query: 711 GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVI 767
VL+L N + IP + + + L EL ++ N RLT LQ I
Sbjct: 424 K------VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 174 LNGSIPVEIGNLKHLTSLDLQMNKLSGL--IPEAIHGCEELQKFAASNNMLE-GTIPSSI 230
L ++ G+L L +L LQMN+L L I E + LQ+ S N +
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 231 VLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLS 290
KSL LN+++N L+ +I L ++ L+L N IP ++ KL L+EL+++
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKS-IPKQVVKLEALQELNVA 452
Query: 291 KNNLSGSISLLNTQLKNLETLVLSDNAFTGSIP 323
N L + +L +L+ + L N + S P
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 28/167 (16%)
Query: 639 SKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLR 698
SK + HL SNN LT T+ G L E+ L L N +L +LS
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN--------------QLKELS-- 364
Query: 699 GNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS-TIQQCKKLYELRLSENFFTGSIPAD 757
KI + +L L++ +NS+S + K L L +S N T +I
Sbjct: 365 ------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Query: 758 LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP 804
L + +LDL N IP + L L+ LN++ NQL+ VP
Sbjct: 419 LPPRIK---VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VP 460
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 143 LRIGDNLLWGEIPPHIGNLTELRELAIAYCQLN--GSIPVEIGNLKHLTSLDLQMNKLSG 200
L +NLL + + G+LTEL L + QL I +K L LD+ N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 201 LIPEAIHGC---EELQKFAASNNMLEGTI---------------------PSSIVLLKSL 236
E C + L S+N+L TI P +V L++L
Sbjct: 388 -YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEAL 446
Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIP------SELNKLAQLEE 286
Q LN+A+N L L +L+ + L N +D P LNK +Q E+
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 502
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 543 LFQLKKLRIINFSHNKFSG-SIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRL 601
+ L KLRI+ SHN+ I + L LDL++N + + NL L L
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHLDL 97
Query: 602 AHNHLTG-NIPSEFGKLTELNFLDLS 626
+ N I EFG +++L FL LS
Sbjct: 98 SFNAFDALPICKEFGNMSQLKFLGLS 123
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 159 GNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAAS 218
G L L L +++ QL S+P+ L LT LD+ N+L+ L A+ G ELQ+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 219 NNMLEGTIPSSIVLLKSLQILNLANNSLS 247
N L+ P + L+ L+LANN L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 42/203 (20%)
Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC-----QLNGSIPVEIGN 184
+PP++ +L + +NLL+ + T L +L + C Q++G++PV
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV---- 78
Query: 185 LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
L +LDL N+L L +L T+P+ L +L+++ N
Sbjct: 79 ---LGTLDLSHNQLQSL------------------PLLGQTLPA-------LTVLDVSFN 110
Query: 245 SLSGSIPV-ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
L+ S+P+ L L L+ L L GN P L +LE+L L+ N+L+ + L
Sbjct: 111 RLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLN 169
Query: 304 QLKNLETLVLSDNAFTGSIPIKF 326
L+NL+TL+L +N+ +IP F
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGF 191
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-----GQIAPQLSKCAKLAHLLL 649
NL R L + G +P L LDLS N GQ P L+ L +
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTV------LDV 107
Query: 650 SNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
S N LT ++P LG+L+ +GEL L N P + KL KLSL N+L+
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELP 164
Query: 707 PPEIGNLTALNVLNLQRNSL 726
+ L L+ L LQ NSL
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 18/159 (11%)
Query: 618 TELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTG--TIPFWLGSLQEIGELDLSS 675
+ FL+ + N FT + S +L L+L N L + ++ + LD+S
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 676 NNFNGTVPAEIGNCS---KLLKLSLRGNNLSGKI----PPEIGNLTALNVLNLQRNSLSG 728
N+ N A C+ +L L+L N L+G + PP++ VL+L N +
Sbjct: 413 NSLNSH--AYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV------KVLDLHNNRIMS 464
Query: 729 NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVI 767
IP + + L EL ++ N RLT LQ I
Sbjct: 465 -IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 671 LDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG--KIPPEIGNLTALNVLNLQRNSL-S 727
L+ + N F +V +L L L+ N L K+ N+++L L++ NSL S
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 728 GNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL 787
T + + L LS N TGS+ L + +LDL NN IP + L
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVK---VLDL-HNNRIMSIPKDVTHLQ 473
Query: 788 KLERLNISYNQLQG 801
L+ LN++ NQL+
Sbjct: 474 ALQELNVASNQLKS 487
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 85/215 (39%), Gaps = 36/215 (16%)
Query: 262 YLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG--SISLLNTQLKNLETLVLSDNAFT 319
+LN N+F + + L +L+ L L +N L ++L+ + +LETL +S N+
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 320 GSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCXXXXXXXXXXNSFKGELPRSXXXXX 379
+ C S+ L L+ N L+G + RC ++ +
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTG----SVFRCLPPKVKVLDLHNNR----------- 461
Query: 380 XXXXXXXXXXSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQM 439
S P ++ +L L+ L + N + +L +L I+L+DN
Sbjct: 462 ------------IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN-- 507
Query: 440 SGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKL 474
P + T C G+ + + N SG + + G +
Sbjct: 508 ----PWDCT-CPGIRYLSEWINKHSGVVRNSAGSV 537
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 183 GNLKHLTSLDLQMNKLSGLIPEAI--HGCEELQKFAASNNMLEG-TIPSSIVLLKSLQIL 239
LK L +L LQ N L A+ L+ S N L + +S+ +L
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 240 NLANNSLSGSI------PVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNN 293
NL++N L+GS+ V++ L N R ++ IP ++ L L+EL+++ N
Sbjct: 434 NLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS---------IPKDVTHLQALQELNVASNQ 484
Query: 294 LSGSISLLNTQLKNLETLVLSDNAFTGSIP 323
L + +L +L+ + L DN + + P
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 29/216 (13%)
Query: 542 SLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRL 601
S+F +++++ S F + P + S S T L+ T N F+ + + + L L L
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPS-SFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384
Query: 602 AHNHLTG--NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIP 659
N L + ++ L LD+S NS + CA
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR--TCA----------------- 425
Query: 660 FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVL 719
W S I L+LSSN G+V + K+L L NN IP ++ +L AL L
Sbjct: 426 -WAES---ILVLNLSSNMLTGSVFRCLPPKVKVLDL---HNNRIMSIPKDVTHLQALQEL 478
Query: 720 NLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP 755
N+ N L + L + L +N + + P
Sbjct: 479 NVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 528 ITLYNNSFKGPLPPSLFQLKKLRIINFSHNKF-SGSIYPLTGSNSLTALDLTNNSFSGPI 586
++L NS P + L +LR++ SHN+ S + + L LD+++N
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 587 PSELAMSRNLSRLRLAHNHLTG-NIPSEFGKLTELNFLDLSFNSF 630
+A +L L L+ N + EFG LT+L FL LS F
Sbjct: 117 CCPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 27/141 (19%)
Query: 162 TELRELAIAYCQLNG-----SIPVEIGNLKHLTSLDLQMNKL-SGLIPEAIHGCEELQKF 215
+ L+ L Q NG + + N+ L +LD+ +N L S E +
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 216 AASNNMLEGT---------------------IPSSIVLLKSLQILNLANNSLSGSIPVEL 254
S+NML G+ IP + L++LQ LN+A+N L
Sbjct: 434 NLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVF 493
Query: 255 SHLFNLRYLNLLGNIFDGEIP 275
L +L+Y+ L N +D P
Sbjct: 494 DRLTSLQYIWLHDNPWDCTCP 514
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 88 NLTSLETLDLSSNSL-TGLIPSEXXXXXXXXXXXXYSNSFSGKI----PPEIGFLNKLQV 142
N++SLETLD+S NSL + SN +G + PP K++V
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP------KVKV 454
Query: 143 LRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSL 191
L + +N + IP + +L L+EL +A QL V G LTSL
Sbjct: 455 LDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS---VPDGVFDRLTSL 499
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 159 GNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAAS 218
G L L L +++ QL S+P+ L LT LD+ N+L+ L A+ G ELQ+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 219 NNMLEGTIPSSIVLLKSLQILNLANNSLS 247
N L+ P + L+ L+LANN+L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 44/204 (21%)
Query: 130 IPPEIGFLNKLQVLRIGDNLLW----GEIPPHIGNLTELR--ELAIAYCQLNGSIPVEIG 183
+PP++ +L + +NLL+ + P+ LT+L + Q++G++PV
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVDGTLPV--- 78
Query: 184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
L +LDL N+L L +L T+P+ L +L+++
Sbjct: 79 ----LGTLDLSHNQLQSL------------------PLLGQTLPA-------LTVLDVSF 109
Query: 244 NSLSGSIPV-ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN 302
N L+ S+P+ L L L+ L L GN P L +LE+L L+ NNL+ + L
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 303 TQLKNLETLVLSDNAFTGSIPIKF 326
L+NL+TL+L +N+ +IP F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-----GQIAPQLSKCAKLAHLLL 649
NL R L + G +P L LDLS N GQ P L+ L +
Sbjct: 61 NLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTV------LDV 107
Query: 650 SNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
S N LT ++P LG+L+ +GEL L N P + KL KLSL NNL+
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 707 PPEIGNLTALNVLNLQRNSL 726
+ L L+ L LQ NSL
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 159 GNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAAS 218
G L L L +++ QL S+P+ L LT LD+ N+L+ L A+ G ELQ+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 219 NNMLEGTIPSSIVLLKSLQILNLANNSLS 247
N L+ P + L+ L+LANN+L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 44/204 (21%)
Query: 130 IPPEIGFLNKLQVLRIGDNLLW----GEIPPHIGNLTELR--ELAIAYCQLNGSIPVEIG 183
+PP++ +L + +NLL+ + P+ LT+L + Q++G++PV
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVDGTLPV--- 78
Query: 184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
L +LDL N+L L +L T+P+ L +L+++
Sbjct: 79 ----LGTLDLSHNQLQSL------------------PLLGQTLPA-------LTVLDVSF 109
Query: 244 NSLSGSIPV-ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN 302
N L+ S+P+ L L L+ L L GN P L +LE+L L+ NNL+ + L
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 303 TQLKNLETLVLSDNAFTGSIPIKF 326
L+NL+TL+L +N+ +IP F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-----GQIAPQLSKCAKLAHLLL 649
NL R L + G +P L LDLS N GQ P L+ L +
Sbjct: 61 NLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTV------LDV 107
Query: 650 SNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
S N LT ++P LG+L+ +GEL L N P + KL KLSL NNL+
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 707 PPEIGNLTALNVLNLQRNSL 726
+ L L+ L LQ NSL
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 159 GNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAAS 218
G L L L +++ QL S+P+ L LT LD+ N+L+ L A+ G ELQ+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 219 NNMLEGTIPSSIVLLKSLQILNLANNSLS 247
N L+ P + L+ L+LANN+L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 44/204 (21%)
Query: 130 IPPEIGFLNKLQVLRIGDNLLW----GEIPPHIGNLTELR--ELAIAYCQLNGSIPVEIG 183
+PP++ +L + +NLL+ + P+ LT+L + Q++G++PV
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVDGTLPV--- 78
Query: 184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
L +LDL N+L L +L T+P+ L +L+++
Sbjct: 79 ----LGTLDLSHNQLQSL------------------PLLGQTLPA-------LTVLDVSF 109
Query: 244 NSLSGSIPV-ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN 302
N L+ S+P+ L L L+ L L GN P L +LE+L L+ NNL+ + L
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 303 TQLKNLETLVLSDNAFTGSIPIKF 326
L+NL+TL+L +N+ +IP F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-----GQIAPQLSKCAKLAHLLL 649
NL R L + G +P L LDLS N GQ P L+ L +
Sbjct: 61 NLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTV------LDV 107
Query: 650 SNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
S N LT ++P LG+L+ +GEL L N P + KL KLSL NNL+
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 707 PPEIGNLTALNVLNLQRNSL 726
+ L L+ L LQ NSL
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 159 GNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAAS 218
G L L L +++ QL S+P+ L LT LD+ N+L+ L A+ G ELQ+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 219 NNMLEGTIPSSIVLLKSLQILNLANNSLS 247
N L+ P + L+ L+LANN L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 42/203 (20%)
Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC-----QLNGSIPVEIGN 184
+PP++ +L + +NLL+ + T L +L + C Q++G++PV
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV---- 78
Query: 185 LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
L +LDL N+L L +L T+P+ L +L+++ N
Sbjct: 79 ---LGTLDLSHNQLQSL------------------PLLGQTLPA-------LTVLDVSFN 110
Query: 245 SLSGSIPV-ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
L+ S+P+ L L L+ L L GN P L +LE+L L+ N L+ + L
Sbjct: 111 RLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 304 QLKNLETLVLSDNAFTGSIPIKF 326
L+NL+TL+L +N+ +IP F
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGF 191
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 60/140 (42%), Gaps = 24/140 (17%)
Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-----GQIAPQLSKCAKLAHLLL 649
NL R L + G +P L LDLS N GQ P L+ L +
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTV------LDV 107
Query: 650 SNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
S N LT ++P LG+L+ +GEL L N P + KL KLSL N L+
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 707 PPEIGNLTALNVLNLQRNSL 726
+ L L+ L LQ NSL
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 159 GNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAAS 218
G L L L +++ QL S+P+ L LT LD+ N+L+ L A+ G ELQ+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 219 NNMLEGTIPSSIVLLKSLQILNLANNSLS 247
N L+ P + L+ L+LANN L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 42/203 (20%)
Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC-----QLNGSIPVEIGN 184
+PP++ +L + +NLL+ + T L +L + C Q++G++PV
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV---- 78
Query: 185 LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
L +LDL N+L L +L T+P+ L +L+++ N
Sbjct: 79 ---LGTLDLSHNQLQSL------------------PLLGQTLPA-------LTVLDVSFN 110
Query: 245 SLSGSIPV-ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
L+ S+P+ L L L+ L L GN P L +LE+L L+ N L+ + L
Sbjct: 111 RLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 304 QLKNLETLVLSDNAFTGSIPIKF 326
L+NL+TL+L +N+ +IP F
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGF 191
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 60/140 (42%), Gaps = 24/140 (17%)
Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-----GQIAPQLSKCAKLAHLLL 649
NL R L + G +P L LDLS N GQ P L+ L +
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTV------LDV 107
Query: 650 SNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
S N LT ++P LG+L+ +GEL L N P + KL KLSL N L+
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 707 PPEIGNLTALNVLNLQRNSL 726
+ L L+ L LQ NSL
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 159 GNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAAS 218
G L L L +++ QL S+P+ L LT LD+ N+L+ L A+ G ELQ+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 219 NNMLEGTIPSSIVLLKSLQILNLANNSLS 247
N L+ P + L+ L+LANN L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 42/203 (20%)
Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC-----QLNGSIPVEIGN 184
+PP++ +L + +NLL+ + T L +L + C Q++G++PV
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV---- 78
Query: 185 LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
L +LDL N+L L +L T+P+ L +L+++ N
Sbjct: 79 ---LGTLDLSHNQLQSL------------------PLLGQTLPA-------LTVLDVSFN 110
Query: 245 SLSGSIPV-ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
L+ S+P+ L L L+ L L GN P L +LE+L L+ N L+ + L
Sbjct: 111 RLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 304 QLKNLETLVLSDNAFTGSIPIKF 326
L+NL+TL+L +N+ +IP F
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGF 191
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 60/140 (42%), Gaps = 24/140 (17%)
Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-----GQIAPQLSKCAKLAHLLL 649
NL R L + G +P L LDLS N GQ P L+ L +
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTV------LDV 107
Query: 650 SNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
S N LT ++P LG+L+ +GEL L N P + KL KLSL N L+
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 707 PPEIGNLTALNVLNLQRNSL 726
+ L L+ L LQ NSL
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 159 GNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAAS 218
G L L L +++ QL S+P+ L LT LD+ N+L+ L A+ G ELQ+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 219 NNMLEGTIPSSIVLLKSLQILNLANNSLS 247
N L+ P + L+ L+LANN L+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 42/203 (20%)
Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC-----QLNGSIPVEIGN 184
+PP++ +L + +NLL+ + T L +L + C Q++G++PV
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV---- 78
Query: 185 LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
L +LDL N+L L +L T+P+ L +L+++ N
Sbjct: 79 ---LGTLDLSHNQLQSL------------------PLLGQTLPA-------LTVLDVSFN 110
Query: 245 SLSGSIPV-ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
L+ S+P+ L L L+ L L GN P L +LE+L L+ N L+ + L
Sbjct: 111 RLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Query: 304 QLKNLETLVLSDNAFTGSIPIKF 326
L+NL+TL+L +N+ +IP F
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGF 191
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 60/140 (42%), Gaps = 24/140 (17%)
Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-----GQIAPQLSKCAKLAHLLL 649
NL R L + G +P L LDLS N GQ P L+ L +
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTV------LDV 107
Query: 650 SNNELTGTIPFWLGSLQEIGELD---LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
S N LT ++P LG+L+ +GEL L N P + KL KLSL N L+
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 707 PPEIGNLTALNVLNLQRNSL 726
+ L L+ L LQ NSL
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 115/283 (40%), Gaps = 20/283 (7%)
Query: 474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL-TFRFLSELYLITLYN 532
L NL L L N ++ P L +L + + NK++ L L ELYL N
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL----N 118
Query: 533 NSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAM 592
+ P L L K +N N + PL+ L L +T + P +A
Sbjct: 119 EDNISDISP-LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IAN 175
Query: 593 SRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652
+L L L +N + P LT L++ N T I P ++ +L L + NN
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP-VANXTRLNSLKIGNN 231
Query: 653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGN 712
++T P L +L ++ L++ +N + + + +KL L++ N +S + N
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISD--ISVLNN 285
Query: 713 LTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP 755
L+ LN L L N L I L L LS+N T P
Sbjct: 286 LSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 77/198 (38%), Gaps = 8/198 (4%)
Query: 460 GNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV-PLT 518
GN S + +NL IL L N L+ A+ L+Q+ L+DN SV P T
Sbjct: 40 GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 99
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIYP---LTGSNSLTA 574
F L L+ + L + L P LF+ L L+ + N P +LT
Sbjct: 100 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTH 156
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQI 634
L L N S +L RL L N + P F L L L L N+ +
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 635 APQLSKCAKLAHLLLSNN 652
L+ L +L L++N
Sbjct: 217 TEALAPLRALQYLRLNDN 234
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 45/108 (41%)
Query: 402 LSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGN 461
L+ L+ L+L DN + L L+ ++L+ N++S R L + N
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 462 HFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADN 509
+ P L L+ L L N+LS +L + LQ + L DN
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 56/191 (29%), Positives = 79/191 (41%), Gaps = 39/191 (20%)
Query: 86 FLNLTSLETLDLSSNS-LTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLR 144
F L LE LDLS N+ L + P+ +F G +G L+ L + R
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPA----------------TFHG-----LGRLHTLHLDR 113
Query: 145 IGDNLLWGEIPPHIGNLTELRELAIAYCQLNG--SIP----VEIGNLKHLTSLDLQMNKL 198
G E+ P G L L Y Q N ++P ++GNL HL L N++
Sbjct: 114 CG----LQELGP--GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF---LHGNRI 164
Query: 199 SGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHL 257
S + A G L + N + P + L L L L N+LS ++P E L+ L
Sbjct: 165 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPL 223
Query: 258 FNLRYLNLLGN 268
L+YL L N
Sbjct: 224 RALQYLRLNDN 234
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 60/158 (37%), Gaps = 2/158 (1%)
Query: 185 LKHLTSLDLQMN-KLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
L L LDL N +L + P HG L L+ P L +LQ L L +
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 244 NSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
N+L L NL +L L GN L L+ L L +N ++
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 304 QLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARN 341
L L TL L N + ++P + +LQ L L N
Sbjct: 198 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 234
Score = 29.6 bits (65), Expect = 8.4, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGK-LKNLVILQLRQ 484
L L +YL DN + + LT + GN S S+PE + L +L L L Q
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 185
Query: 485 NDLSGPIPASLGYCKRLQQIALADNKLSG 513
N ++ P + RL + L N LS
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 43/184 (23%), Positives = 60/184 (32%), Gaps = 25/184 (13%)
Query: 566 LTGSNSLTALDLTNNS-FSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
TG L LDL++N+ P+ L L L L P F L L +L
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 134
Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
L N+ L HL L N ++ L + L L N P
Sbjct: 135 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 685 EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELR 744
+ +L+ L L NNLS +P E + + L LR
Sbjct: 195 AFRDLGRLMTLYLFANNLSA-LPTE-----------------------ALAPLRALQYLR 230
Query: 745 LSEN 748
L++N
Sbjct: 231 LNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 77/198 (38%), Gaps = 8/198 (4%)
Query: 460 GNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV-PLT 518
GN S + +NL IL L N L+ A+ L+Q+ L+DN SV P T
Sbjct: 41 GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIYP---LTGSNSLTA 574
F L L+ + L + L P LF+ L L+ + N P +LT
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTH 157
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQI 634
L L N S +L RL L N + P F L L L L N+ +
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 635 APQLSKCAKLAHLLLSNN 652
L+ L +L L++N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 45/108 (41%)
Query: 402 LSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGN 461
L+ L+ L+L DN + L L+ ++L+ N++S R L + N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 462 HFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADN 509
+ P L L+ L L N+LS +L + LQ + L DN
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 56/191 (29%), Positives = 79/191 (41%), Gaps = 39/191 (20%)
Query: 86 FLNLTSLETLDLSSNS-LTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLR 144
F L LE LDLS N+ L + P+ +F G +G L+ L + R
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPA----------------TFHG-----LGRLHTLHLDR 114
Query: 145 IGDNLLWGEIPPHIGNLTELRELAIAYCQLNG--SIP----VEIGNLKHLTSLDLQMNKL 198
G E+ P G L L Y Q N ++P ++GNL HL L N++
Sbjct: 115 CG----LQELGP--GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF---LHGNRI 165
Query: 199 SGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHL 257
S + A G L + N + P + L L L L N+LS ++P E L+ L
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPL 224
Query: 258 FNLRYLNLLGN 268
L+YL L N
Sbjct: 225 RALQYLRLNDN 235
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 60/158 (37%), Gaps = 2/158 (1%)
Query: 185 LKHLTSLDLQMN-KLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
L L LDL N +L + P HG L L+ P L +LQ L L +
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 244 NSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
N+L L NL +L L GN L L+ L L +N ++
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 304 QLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARN 341
L L TL L N + ++P + +LQ L L N
Sbjct: 199 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
Score = 29.6 bits (65), Expect = 8.8, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGK-LKNLVILQLRQ 484
L L +YL DN + + LT + GN S S+PE + L +L L L Q
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186
Query: 485 NDLSGPIPASLGYCKRLQQIALADNKLSG 513
N ++ P + RL + L N LS
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Score = 29.6 bits (65), Expect = 9.5, Method: Composition-based stats.
Identities = 43/184 (23%), Positives = 60/184 (32%), Gaps = 25/184 (13%)
Query: 566 LTGSNSLTALDLTNNS-FSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
TG L LDL++N+ P+ L L L L P F L L +L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
L N+ L HL L N ++ L + L L N P
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 685 EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELR 744
+ +L+ L L NNLS +P E + + L LR
Sbjct: 196 AFRDLGRLMTLYLFANNLSA-LPTE-----------------------ALAPLRALQYLR 231
Query: 745 LSEN 748
L++N
Sbjct: 232 LNDN 235
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 28/229 (12%)
Query: 476 NLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
+ +L L+ N ++ K L + L +NK+S P F L +L + L N
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 536 KGPLPPSLFQ-LKKLRIINFSHNKFSGSIY--------PLTGSNSLTALDLTNNSFSG-- 584
K LP + + L++LR+ K S++ G+N L + + N +F G
Sbjct: 113 KE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 585 -------------PIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT 631
IP L S L+ L L N +T + L L L LSFNS +
Sbjct: 172 KLSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 632 GQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG 680
L+ L L L+NN+L +P L + I + L +NN +
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 37/233 (15%)
Query: 398 EIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID 457
+ NL L L L +N I+ P L L +YL NQ+ +P ++ L E+
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELR 127
Query: 458 FFGNHFSGSIPETMGKLKNLVILQLRQNDL--SGPIPASLGYCKRLQQIALADNKLSGSV 515
N + L +++++L N L SG + K+L I +AD ++ ++
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI 186
Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSG-SIYPLTGSNSLTA 574
P LPPSL +L + NK + L G N+L
Sbjct: 187 PQG--------------------LPPSLTEL------HLDGNKITKVDAASLKGLNNLAK 220
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSF 627
L L+ NS S LA + +L L L +N L +P G L + ++ + +
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP---GGLADHKYIQVVY 269
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 87/228 (38%), Gaps = 32/228 (14%)
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQI 634
LDL NN + + +NL L L +N ++ P F L +L L LS N ++
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 635 APQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSN----------NFNG---- 680
++ K L L + NE+T L ++ ++L +N F G
Sbjct: 116 PEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 681 -----------TVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
T+P G L +L L GN ++ + L L L L NS+S
Sbjct: 174 SYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG 777
++ L EL L+ N +P L +QV+ L NN S
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY-LHNNNISA 277
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485
++ LS I + D ++ +IP+ L LTE+ GN + ++ L NL L L N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
+S SL L+++ L +NKL VP + ++ L+NN+
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 28/229 (12%)
Query: 476 NLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
+ +L L+ N ++ K L + L +NK+S P F L +L + L N
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 536 KGPLPPSLFQ-LKKLRIINFSHNKFSGSIY--------PLTGSNSLTALDLTNNSFSG-- 584
K LP + + L++LR+ K S++ G+N L + + N +F G
Sbjct: 113 KE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 585 -------------PIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT 631
IP L S L+ L L N +T + L L L LSFNS +
Sbjct: 172 KLSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 632 GQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG 680
L+ L L L+NN+L +P L + I + L +NN +
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 37/233 (15%)
Query: 398 EIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID 457
+ NL L L L +N I+ P L L +YL NQ+ +P ++ L E+
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELR 127
Query: 458 FFGNHFSGSIPETMGKLKNLVILQLRQNDL--SGPIPASLGYCKRLQQIALADNKLSGSV 515
N + L +++++L N L SG + K+L I +AD ++ ++
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI 186
Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSG-SIYPLTGSNSLTA 574
P LPPSL +L + NK + L G N+L
Sbjct: 187 PQG--------------------LPPSLTEL------HLDGNKITKVDAASLKGLNNLAK 220
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSF 627
L L+ NS S LA + +L L L +N L +P G L + ++ + +
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP---GGLADHKYIQVVY 269
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 87/228 (38%), Gaps = 32/228 (14%)
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQI 634
LDL NN + + +NL L L +N ++ P F L +L L LS N ++
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 635 APQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSN----------NFNG---- 680
++ K L L + NE+T L ++ ++L +N F G
Sbjct: 116 PEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 681 -----------TVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
T+P G L +L L GN ++ + L L L L NS+S
Sbjct: 174 SYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG 777
++ L EL L+ N +P L +QV+ L NN S
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY-LHNNNISA 277
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485
++ LS I + D ++ +IP+ L LTE+ GN + ++ L NL L L N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
+S SL L+++ L +NKL VP + ++ L+NN+
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 3/158 (1%)
Query: 169 IAYCQLNGSIPVEIGNLKHLTSLD---LQMNKLSGLIPEAIHGCEELQKFAASNNMLEGT 225
+ Y L G+ +I LK LT+L L N+L L L++ N L+
Sbjct: 65 VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 226 IPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLE 285
L +L LNLA+N L L NL L+L N +KL QL+
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184
Query: 286 ELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIP 323
+L L +N L + +L +L+ + L DN + + P
Sbjct: 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 402 LSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPR----ELTNCSGLTEID 457
L+ L+ L L +N + KL L+ + L NQ+ S+P+ +LTN LTE+D
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTN---LTELD 163
Query: 458 FFGNHFSGSIPE-TMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP 516
N S+PE KL L L+L QN L LQ I L DN + P
Sbjct: 164 LSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Query: 517 LTFRFLSE 524
R+LSE
Sbjct: 223 -GIRYLSE 229
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 37/90 (41%)
Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
NL+ L LAHN L F KLT L LDLS+N K +L L L N+L
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 655 TGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
L + + L N ++ T P
Sbjct: 194 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 50/144 (34%)
Query: 588 SELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHL 647
S L NL+ L L N L F KLT L L L N K L +L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 648 LLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP 707
L++N+L L + ELDLS N ++L L L N L
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 708 PEIGNLTALNVLNLQRNSLSGNIP 731
LT+L + L N P
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 47/130 (36%)
Query: 638 LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSL 697
L + L +L+L+ N+L L + EL L N + L L+L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 698 RGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPAD 757
N L LT L L+L N L + +L +LRL +N
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200
Query: 758 LGRLTELQVI 767
RLT LQ I
Sbjct: 201 FDRLTSLQYI 210
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 11/201 (5%)
Query: 495 LGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLF-QLKKLRIIN 553
+ Y ++ +AL NKL L + L+ L + L N + LP +F +L L+ +
Sbjct: 59 IQYLPNVRYLALGGNKLHDISAL--KELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV 115
Query: 554 FSHNKF----SGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN 609
N+ G LT +LT L+L +N NL+ L L++N L
Sbjct: 116 LVENQLQSLPDGVFDKLT---NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
Query: 610 IPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIG 669
F KLT+L L L N + L ++ L +N T P + I
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 232
Query: 670 ELDLSSNNFNGTVPAEIGNCS 690
+ N G+V + CS
Sbjct: 233 KHSGVVRNSAGSVAPDSAKCS 253
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 161 LTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASN 219
LT L+EL + QL S+P + L +LT L+L N+L L L + S
Sbjct: 108 LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 220 NMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIP 275
N L+ L L+ L L N L L +L+Y+ L N +D P
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 452 GLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKL 511
GLTEI ++PET+ +++ L QN + P + K+L++I L++N++
Sbjct: 22 GLTEI-------PTNLPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQI 68
Query: 512 SGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ 545
S P F+ L L + LY N LP SLF+
Sbjct: 69 SELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFE 101
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 452 GLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKL 511
GLTEI ++PET+ +++ L QN + P + K+L++I L++N++
Sbjct: 22 GLTEI-------PTNLPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQI 68
Query: 512 SGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ 545
S P F+ L L + LY N LP SLF+
Sbjct: 69 SELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFE 101
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 209 CEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN 268
C Q N+ ++P+ I K Q L L NN ++ P HL NL+ L N
Sbjct: 10 CSCDQTLVNCQNIRLASVPAGIPTDK--QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN 67
Query: 269 IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAF 318
+KL QL +LDL+ N+L LK+L + L +N +
Sbjct: 68 KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 29/76 (38%)
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
L NN + P NL +L N LT F KLT+L LDL+ N
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 637 QLSKCAKLAHLLLSNN 652
L H+ L NN
Sbjct: 100 AFDNLKSLTHIYLYNN 115
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 558 KFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKL 617
+ GS P S S T +D + S + +P+ + + + L L N +T P F +L
Sbjct: 5 RARGSACPSQCSCSGTTVDCSGKSLAS-VPTGIPTTTQV--LYLYDNQITKLEPGVFDRL 61
Query: 618 TELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
T+L LDL N T A K +L L L++N+L
Sbjct: 62 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 34/89 (38%)
Query: 421 VEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVIL 480
V G T +YLYDNQ++ P + LT +D N + KL L L
Sbjct: 32 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 91
Query: 481 QLRQNDLSGPIPASLGYCKRLQQIALADN 509
L N L + K L I L +N
Sbjct: 92 SLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 188 LTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS 247
+ SLDL NK++ + + C LQ ++ + + L SL+ L+L++N LS
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 248 GSIPVELSHLFNLRYLNLLGNIF 270
L +L+YLNL+GN +
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPY 110
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 30/178 (16%)
Query: 609 NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCA------------------------KL 644
+IPS G + LDLSFN T L CA L
Sbjct: 19 SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 645 AHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGT-VPAEIGNCSKLLKLSLRGNNLS 703
HL LS+N L+ W G L + L+L N + V + N + L L +
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
Query: 704 GKIPP-EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYE--LRLSENFFTGSIPADL 758
+I + LT+LN L ++ SL +++ + ++ L LSE+ F I AD+
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 188 LTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS 247
+ SLDL NK++ + + C LQ ++ + + L SL+ L+L++N LS
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 248 GSIPVELSHLFNLRYLNLLGNIF 270
L +L+YLNL+GN +
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPY 136
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 30/178 (16%)
Query: 609 NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCA------------------------KL 644
+IPS G + LDLSFN T L CA L
Sbjct: 45 SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 645 AHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGT-VPAEIGNCSKLLKLSLRGNNLS 703
HL LS+N L+ W G L + L+L N + V + N + L L +
Sbjct: 103 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 162
Query: 704 GKIPP-EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYE--LRLSENFFTGSIPADL 758
+I + LT+LN L ++ SL +++ + ++ L LSE+ F I AD+
Sbjct: 163 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 220
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Query: 180 VEIG---NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
+E+G L L +L+L N L+ + A +L++ NN +E + + SL
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 237 QILNLAN-NSLSGSIPVELSHLFNLRYLNL-LGNIFDGEIPSELNKLAQLEELDLSKNN- 293
L+L L LFNL+YLNL + NI D +P+ L L LEEL++S N+
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPN-LTPLVGLEELEMSGNHF 230
Query: 294 -------LSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLS 344
G SL + N + ++ NAF G +SL +L LA N LS
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL---------ASLVELNLAHNNLS 279
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 28/190 (14%)
Query: 86 FLNLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPP------------E 133
F L SL TL+L N LT +IPS N+ IP +
Sbjct: 119 FNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177
Query: 134 IGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDL 193
+G L KL+ + G L L+ L + C + +P + L L L++
Sbjct: 178 LGELKKLEYISEGA----------FEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEM 225
Query: 194 QMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE 253
N + P + HG L+K N+ + ++ L SL LNLA+N+LS S+P +
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHD 284
Query: 254 LSHLFNLRYL 263
L LRYL
Sbjct: 285 L--FTPLRYL 292
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 571 SLTAL-DLTNNSFSGPIPSELAMSR--NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSF 627
S TAL DL++N+ S + +E +R NL L L+HNHL F + L +LDLS
Sbjct: 39 SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 628 NSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI- 686
N S L LLL NN + + ++ +L LS N P E+
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELI 156
Query: 687 --GN-CSKLLKLSLRGNNLSGKIP 707
GN KL+ L L N L K+P
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK-KLP 179
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 238 ILNLANNSLS----GSIPVELSHLFNL----RYLNLLGNIFDGEIPSELNKLAQLEELDL 289
+L+L++N+LS P L++L +L +LN + + + +P + L LDL
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--EAFVP-----VPNLRYLDL 95
Query: 290 SKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPL 349
S N+L L + L+ LE L+L +N F + + LQ+L L++N++S FP+
Sbjct: 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF-EDMAQLQKLYLSQNQIS-RFPV 153
Query: 350 ELLR 353
EL++
Sbjct: 154 ELIK 157
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 182 IGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNL 241
N L LDL ++ + +A HG L + N ++ P S L SL+ L
Sbjct: 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111
Query: 242 ANNSLSGSIPVELSHLFNLRYLNLLGN-IFDGEIPSELNKLAQLEELDLSKN 292
L+ + L L+ LN+ N I ++P+ + L L +DLS N
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 182 IGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNL 241
N L LDL ++ + +A HG L + N ++ P S L SL+ L
Sbjct: 47 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 106
Query: 242 ANNSLSGSIPVELSHLFNLRYLNLLGN-IFDGEIPSELNKLAQLEELDLSKN 292
L+ + L L+ LN+ N I ++P+ + L L +DLS N
Sbjct: 107 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
SIP G + + SLDL N+++ + + C LQ ++N + S L SL
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIF 270
+ L+L+ N LS L +L +LNLLGN +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 1/146 (0%)
Query: 663 GSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQ 722
G + + LDLS+N +++ C L L L N ++ +L +L L+L
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 723 RNSLSGNIPSTIQQCKKLYELRLSEN-FFTGSIPADLGRLTELQVILDLSKNNFSGEIPP 781
N LS S + L L L N + T + LT+LQ++ + + F+
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 782 SLGSLLKLERLNISYNQLQGQVPASL 807
L LE L I + LQ P SL
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSL 194
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 21/241 (8%)
Query: 86 FLNLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEI-GFLNKLQVLR 144
F +L SLE LDLS N L+ L S N + + L KLQ+LR
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155
Query: 145 IGDNLLWGEIP-PHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIP 203
+G+ + +I LT L EL I L P + ++++++ L L M + L+
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL- 214
Query: 204 EAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYL 263
E +S LE L+ + + LS L F R +
Sbjct: 215 ------EIFVDVTSSVECLE---------LRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259
Query: 264 NLLG-NIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSI 322
+ ++F ++ LN+++ L EL+ S+N L + +L +L+ + L N + S
Sbjct: 260 KITDESLF--QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317
Query: 323 P 323
P
Sbjct: 318 P 318
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
+ ++ +LDL+NN + S+L NL L L N + F L L LDLS+N
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGN---------LTELRELAIAYCQLNGSIPV 180
+P I LN+L+ L I E+P + + L L+ L + + + S+P
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200
Query: 181 EIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILN 240
I NL++L SL ++ + LS L P AIH +L++ P L+ L
Sbjct: 201 SIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 241 LANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKL 281
L + S ++P+++ L L L+L G + +PS + +L
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 140 LQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLS 199
L+ L + N L +P I +L LREL+I C +P + L S D +
Sbjct: 129 LETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELP------EPLASTDAS-GEHQ 180
Query: 200 GLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFN 259
GL+ LQ + ++P+SI L++L+ L + N+ LS P + HL
Sbjct: 181 GLV--------NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPK 230
Query: 260 LRYLNLLG--------NIFDGE----------------IPSELNKLAQLEELDL 289
L L+L G IF G +P ++++L QLE+LDL
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
SIP G + + SLDL N+++ + + C LQ ++N + S L SL
Sbjct: 19 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIF 270
+ L+L+ N LS L +L +LNLLGN +
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 1/146 (0%)
Query: 663 GSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQ 722
G + + LDLS+N +++ C L L L N ++ +L +L L+L
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 723 RNSLSGNIPSTIQQCKKLYELRLSEN-FFTGSIPADLGRLTELQVILDLSKNNFSGEIPP 781
N LS S + L L L N + T + LT+LQ++ + + F+
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 142
Query: 782 SLGSLLKLERLNISYNQLQGQVPASL 807
L LE L I + LQ P SL
Sbjct: 143 DFAGLTFLEELEIDASDLQSYEPKSL 168
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 86 FLNLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEI-GFLNKLQVLR 144
F +L SLE LDLS N L+ L S N + + L KLQ+LR
Sbjct: 70 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 129
Query: 145 IGDNLLWGEIP-PHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNK 197
+G+ + +I LT L EL I L P + ++++++ L L M +
Sbjct: 130 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 183
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
+ ++ +LDL+NN + S+L NL L L N + F L L LDLS+N
Sbjct: 25 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 84
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 24/134 (17%)
Query: 402 LSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGN 461
L+ L+ L L +N + KL L+ +YLY NQ+ S+P+ +
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGV-------------- 152
Query: 462 HFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRF 521
KL NL L L N L +L+Q++L DN+L F
Sbjct: 153 ---------FDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR 203
Query: 522 LSELYLITLYNNSF 535
L+ L I L NN +
Sbjct: 204 LTSLTHIWLLNNPW 217
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 11/163 (6%)
Query: 495 LGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLF-QLKKLRIIN 553
+ Y ++ +AL NKL L + L+ L + L N + LP +F +L L+ +
Sbjct: 59 IQYLPNVRYLALGGNKLHDISAL--KELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV 115
Query: 554 FSHNKF----SGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN 609
N+ G LT +LT L L +N NL+RL L +N L
Sbjct: 116 LVENQLQSLPDGVFDKLT---NLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL 172
Query: 610 IPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652
F KLT+L L L+ N + L H+ L NN
Sbjct: 173 PEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 30/171 (17%)
Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLA-NN 244
+ + DL+ + L L ++ C L K +P+ + L Q++N+A N
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTK-----------LPTFLKALPEXQLINVACNR 284
Query: 245 SLSG-----------SIPV-ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKN 292
+SG PV E + + Y NL F + + L K +L L+ N
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNL--KTF--PVETSLQKXKKLGXLECLYN 340
Query: 293 NLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKL 343
L G + +++K L +L L+ N T IP FC ++ L A NKL
Sbjct: 341 QLEGKLPAFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 102/255 (40%), Gaps = 77/255 (30%)
Query: 490 PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITL---YNNSFKGPLP------ 540
P+ SL K+L + N+L G +P F SE+ L +L YN + P
Sbjct: 321 PVETSLQKXKKLGXLECLYNQLEGKLPA---FGSEIKLASLNLAYNQITEIPANFCGFTE 377
Query: 541 ---------------PSLFQLKKLRI---INFSHNKFSGSI----------YPLTGSNSL 572
P++F K + + I+FS+N+ GS+ P G N +
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFDPLDPTPFKGIN-V 435
Query: 573 TALDLTNNSFSGPIPSEL-AMSRNLSRLRLAHNHLTGNIPSEFGKLTELNF--------L 623
++++L+NN S P EL + LS + L N LT IP K NF +
Sbjct: 436 SSINLSNNQIS-KFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKDENENFKNTYLLTSI 493
Query: 624 DLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVP 683
DL FN T LS++ T+P+ +G +DLS N+F+ P
Sbjct: 494 DLRFNKLTK----------------LSDDFRATTLPYLVG-------IDLSYNSFS-KFP 529
Query: 684 AEIGNCSKLLKLSLR 698
+ N S L +R
Sbjct: 530 TQPLNSSTLKGFGIR 544
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 531 YNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSEL 590
YNN P+ SL + KKL + +N+ G + L +L+L N + IP+
Sbjct: 314 YNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANF 372
Query: 591 -AMSRNLSRLRLAHNHLTGNIPSEFG--KLTELNFLDLSFN---SFTGQ----IAPQLSK 640
+ + L AHN L IP+ F ++ + +D S+N S G+ + P K
Sbjct: 373 CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFK 431
Query: 641 CAKLAHLLLSNNELT 655
++ + LSNN+++
Sbjct: 432 GINVSSINLSNNQIS 446
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 599 LRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
L L N +T P F LT+L +L+L+ N T K KL HL L N+L
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 565 PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
P S S T +D + S + +P+ + + + L L N +T P F +LT+L LD
Sbjct: 4 PSQCSCSGTTVDCSGKSLAS-VPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLD 60
Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
L N T A K +L L L++N+L
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 34/89 (38%)
Query: 421 VEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVIL 480
V G T +YLYDNQ++ P + LT +D N + KL L L
Sbjct: 24 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83
Query: 481 QLRQNDLSGPIPASLGYCKRLQQIALADN 509
L N L + K L I L +N
Sbjct: 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 25/159 (15%)
Query: 187 HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL 246
H+ +DL +N ++ L + ++LQ +E P ++ NN+
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLK-----VEQQTPGLVI----------RNNTF 75
Query: 247 SGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN--TQ 304
G + + L ++L L F+G LA LE L L++ NL G++ N
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNG--------LANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 305 LKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKL 343
L +LE LVL DN P F LN L L NK+
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 565 PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
P S S T +D + S + +P+ + + + L L N +T P F +LT+L LD
Sbjct: 4 PSQCSCSGTTVDCSGKSLAS-VPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLD 60
Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
L N T A K +L L L++N+L
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 79/208 (37%), Gaps = 26/208 (12%)
Query: 566 LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTG---NIPSE--------- 613
G L AL L NN S + R L +L ++ NHL N+PS
Sbjct: 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133
Query: 614 ---------FGKLTELNFLDLSFNSFTGQ-IAPQLSKCAKLAHLLLSNNELTGTIPFWLG 663
F L +N +++ N P KL +L +S +LTG IP L
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP 192
Query: 664 SLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQR 723
+ + EL L N ++ SKL +L L N + + L L L+L
Sbjct: 193 --ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250
Query: 724 NSLSGNIPSTIQQCKKLYELRLSENFFT 751
N LS +P+ + K L + L N T
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 19/294 (6%)
Query: 436 DNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASL 495
D + SG+ SG+ ++D +S P G +L ++Q L +P +
Sbjct: 1 DEEASGA-----ETTSGIPDLDSLPPTYSAMCP--FGCHCHLRVVQCSDLGLKA-VPKEI 52
Query: 496 GYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFS 555
L + L +N +S F+ L LY + L NN + L+KL+ + S
Sbjct: 53 SPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110
Query: 556 HNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHL--TGNIPSE 613
N P +SL L + +N + RN++ + + N L +G P
Sbjct: 111 KNHLVE--IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168
Query: 614 FGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDL 673
F L +LN+L +S TG I L + L L L +N++ L ++ L L
Sbjct: 169 FDGL-KLNYLRISEAKLTG-IPKDLPET--LNELHLDHNKIQAIELEDLLRYSKLYRLGL 224
Query: 674 SSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLS 727
N + L +L L N LS ++P + +L L V+ L N+++
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 73/188 (38%), Gaps = 28/188 (14%)
Query: 469 ETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLI 528
+T L++L ILQL +N + + L + L DN+L+ F +LS+L +
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL 112
Query: 529 TLYNN------SFKGPLPPSLF-----QLKKLRIINFSHNKFSG---------------S 562
L NN S+ PSL +LK+L I S F G
Sbjct: 113 WLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRYLNLGMCNLKD 170
Query: 563 IYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNF 622
I LT L L+L+ N P +L +L L H + + F L L
Sbjct: 171 IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 623 LDLSFNSF 630
L+LS N+
Sbjct: 231 LNLSHNNL 238
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 75/207 (36%), Gaps = 24/207 (11%)
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQI 634
L+L NS R+L L+L+ N + F L LN L+L N T
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 635 APQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDL---------SSNNFNGTVPAE 685
+KL L L NN + + + + LDL S F G V
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 686 ---IGNCS-----------KLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP 731
+G C+ +L +L L GN L P LT+L L L ++
Sbjct: 160 YLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER 219
Query: 732 STIQQCKKLYELRLSENFFTGSIPADL 758
+ K L EL LS N S+P DL
Sbjct: 220 NAFDDLKSLEELNLSHNNLM-SLPHDL 245
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 6/190 (3%)
Query: 133 EIGFLN---KLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLT 189
E+G N L L + DN L L++LREL + + + L
Sbjct: 75 EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR 134
Query: 190 SLDL-QMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG 248
LDL ++ +L + A G L+ L+ IP+ L++ L+ L L+ N L
Sbjct: 135 RLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IPNLTALVR-LEELELSGNRLDL 192
Query: 249 SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNL 308
P L +LR L L+ + + L LEEL+LS NNL L T L L
Sbjct: 193 IRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 309 ETLVLSDNAF 318
E + L+ N +
Sbjct: 253 ERVHLNHNPW 262
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 281 LAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR 340
L QLE L L N ++ I++L ++L L+TL L DN + +P+ CL + LQ L L++
Sbjct: 128 LPQLESLYLGNNKIT-DITVL-SRLTKLDTLSLEDNQISDIVPLA-CL--TKLQNLYLSK 182
Query: 341 NKLSG 345
N +S
Sbjct: 183 NHISD 187
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 73/188 (38%), Gaps = 28/188 (14%)
Query: 469 ETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLI 528
+T L++L ILQL +N + + L + L DN+L+ F +LS+L +
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL 112
Query: 529 TLYNN------SFKGPLPPSLF-----QLKKLRIINFSHNKFSG---------------S 562
L NN S+ PSL +LK+L I S F G
Sbjct: 113 WLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRYLNLGMCNLKD 170
Query: 563 IYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNF 622
I LT L L+L+ N P +L +L L H + + F L L
Sbjct: 171 IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 623 LDLSFNSF 630
L+LS N+
Sbjct: 231 LNLSHNNL 238
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 6/190 (3%)
Query: 133 EIGFLN---KLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLT 189
E+G N L L + DN L L++LREL + + + L
Sbjct: 75 EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR 134
Query: 190 SLDL-QMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG 248
LDL ++ +L + A G L+ L+ IP+ L++ L+ L L+ N L
Sbjct: 135 RLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IPNLTALVR-LEELELSGNRLDL 192
Query: 249 SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNL 308
P L +LR L L+ + + L LEEL+LS NNL L T L L
Sbjct: 193 IRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 309 ETLVLSDNAF 318
E + L+ N +
Sbjct: 253 ERVHLNHNPW 262
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 75/207 (36%), Gaps = 24/207 (11%)
Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQI 634
L+L NS R+L L+L+ N + F L LN L+L N T
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 635 APQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDL---------SSNNFNGTVPAE 685
+KL L L NN + + + + LDL S F G V
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 686 ---IGNCS-----------KLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP 731
+G C+ +L +L L GN L P LT+L L L ++
Sbjct: 160 YLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER 219
Query: 732 STIQQCKKLYELRLSENFFTGSIPADL 758
+ K L EL LS N S+P DL
Sbjct: 220 NAFDDLKSLEELNLSHNNLM-SLPHDL 245
>pdb|3J20|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 198
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 590 LAMSRNLSRLRLAHNHLTGNIPSE--FGKLTELNFLDLSFNSFTGQIAPQLSKCAK 643
+AM+ + R++ + I E + K ELNF D S G+IA +++K AK
Sbjct: 120 MAMAIAMRRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAK 175
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 30/119 (25%)
Query: 699 GNNLSGKIPPEIGNLTALNVLNLQRNSLS--GNIPSTIQQCKKLYELRLSENFFTGSIPA 756
GNN+ ++P E+ NL L + N L ++P +++ L + +N+ T
Sbjct: 223 GNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEA------LNVRDNYLT----- 270
Query: 757 DLGRLTELQVILDLSKNNFSG--EIPPSLGSL--------------LKLERLNISYNQL 799
DL L + LD+S+N FSG E+PP+L L LE LN+S N+L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 14/194 (7%)
Query: 500 RLQQIALADNKLSGSVP-----LTFRFLSELYLITLYNNSFKGPLPPSLFQLKK-LRIIN 553
RL+++ L D K++G++P T LS L L + + + L LK L++++
Sbjct: 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLS 151
Query: 554 FSH-NKFSGSIYPLTGSNSLTALDLTNNSFSGP-------IPSELAMSRNLSRLRLAHNH 605
+ + + S + +LT+LDL++N G P + +NL+
Sbjct: 152 IAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET 211
Query: 606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSL 665
TG + + + LDLS NS + P +C + L N G G
Sbjct: 212 PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP 271
Query: 666 QEIGELDLSSNNFN 679
++ LDLSSN N
Sbjct: 272 AKLRVLDLSSNRLN 285
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 281 LAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR 340
L QLE L L N ++ I++L ++L L+TL L DN + +P+ + LQ L L++
Sbjct: 130 LPQLESLYLGNNKIT-DITVL-SRLTKLDTLSLEDNQISDIVPLAGL---TKLQNLYLSK 184
Query: 341 NKLS 344
N +S
Sbjct: 185 NHIS 188
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 281 LAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR 340
L QLE L L N ++ I++L ++L L+TL L DN + +P+ + LQ L L++
Sbjct: 133 LPQLESLYLGNNKIT-DITVL-SRLTKLDTLSLEDNQISDIVPLAGL---TKLQNLYLSK 187
Query: 341 NKLS 344
N +S
Sbjct: 188 NHIS 191
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 281 LAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR 340
L QLE L L N ++ I++L ++L L+TL L DN + +P+ + LQ L L++
Sbjct: 133 LPQLESLYLGNNKIT-DITVL-SRLTKLDTLSLEDNQISDIVPLAGL---TKLQNLYLSK 187
Query: 341 NKLS 344
N +S
Sbjct: 188 NHIS 191
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 685 EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNS 725
++ N ++ LSL G G++P IG LT L VL+ +S
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS 358
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 281 LAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR 340
L QLE L L N ++ I++L ++L L+TL L DN + +P+ + LQ L L++
Sbjct: 131 LPQLESLYLGNNKIT-DITVL-SRLTKLDTLSLEDNQISDIVPLAGL---TKLQNLYLSK 185
Query: 341 NKLS 344
N +S
Sbjct: 186 NHIS 189
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 281 LAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR 340
L QLE L L N ++ I++L ++L L+TL L DN + +P+ + LQ L L++
Sbjct: 153 LPQLESLYLGNNKIT-DITVL-SRLTKLDTLSLEDNQISDIVPLAGL---TKLQNLYLSK 207
Query: 341 NKLS 344
N +S
Sbjct: 208 NHIS 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,221,079
Number of Sequences: 62578
Number of extensions: 976943
Number of successful extensions: 3348
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1981
Number of HSP's gapped (non-prelim): 738
length of query: 970
length of database: 14,973,337
effective HSP length: 108
effective length of query: 862
effective length of database: 8,214,913
effective search space: 7081255006
effective search space used: 7081255006
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)