Query 036729
Match_columns 970
No_of_seqs 966 out of 5793
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:53:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-72 2.7E-77 709.3 48.2 586 19-849 23-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.2E-58 1.4E-62 576.1 39.3 511 332-846 70-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.2E-36 2.7E-41 319.7 8.3 373 453-828 80-456 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.8E-37 1.5E-41 321.6 4.8 362 358-721 81-446 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 5E-39 1.1E-43 323.5 -16.8 495 232-800 43-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 4.2E-38 9.1E-43 316.9 -12.8 492 89-655 44-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 9.8E-36 2.1E-40 330.2 -1.4 464 333-822 23-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 6.6E-34 1.4E-38 315.7 -5.8 506 263-821 3-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.1E-32 2.5E-37 291.3 -2.3 366 454-828 10-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.8E-32 3.8E-37 289.8 -3.7 364 89-463 6-374 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.1E-21 2.4E-26 246.9 25.2 358 66-462 532-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.1E-21 2.4E-26 246.8 24.4 307 500-821 590-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.2E-23 2.5E-28 213.0 -3.1 385 428-821 68-498 (498)
14 KOG4237 Extracellular matrix p 99.8 1.6E-23 3.5E-28 212.0 -5.2 413 356-797 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.7E-20 1E-24 214.1 17.4 266 476-809 202-467 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 3.9E-20 8.4E-25 214.8 15.0 263 525-831 203-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 3E-23 203.6 17.0 312 22-392 60-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.4E-18 5.1E-23 201.7 14.2 226 548-801 200-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 5.5E-19 1.2E-23 193.9 -3.7 201 71-271 3-234 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-18 3.2E-23 190.5 -2.5 258 94-369 2-292 (319)
21 KOG0617 Ras suppressor protein 99.7 1.2E-18 2.6E-23 156.4 -3.5 164 592-761 31-195 (264)
22 KOG0617 Ras suppressor protein 99.6 5.3E-17 1.2E-21 145.8 0.8 165 614-785 29-194 (264)
23 PLN03150 hypothetical protein; 99.6 9.7E-15 2.1E-19 171.4 12.3 151 20-173 367-526 (623)
24 PLN03150 hypothetical protein; 99.5 1.5E-14 3.2E-19 170.0 9.7 114 740-854 420-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 2.4E-12 5.1E-17 137.7 -2.1 196 616-822 73-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.1 2E-12 4.4E-17 138.2 -4.2 195 593-798 74-271 (722)
27 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3.1E-15 130.8 8.4 204 551-762 97-301 (394)
28 KOG1909 Ran GTPase-activating 99.1 1.5E-11 3.2E-16 124.6 -0.6 232 66-318 30-310 (382)
29 COG4886 Leucine-rich repeat (L 99.1 1.8E-10 3.9E-15 130.0 6.9 196 599-828 98-294 (394)
30 KOG1909 Ran GTPase-activating 99.0 2.3E-11 4.9E-16 123.2 -1.5 163 182-344 88-283 (382)
31 KOG4658 Apoptotic ATPase [Sign 99.0 3.6E-10 7.7E-15 135.5 6.1 84 110-194 567-650 (889)
32 KOG3207 Beta-tubulin folding c 98.9 1.5E-10 3.2E-15 120.5 0.6 111 231-341 118-232 (505)
33 KOG1259 Nischarin, modulator o 98.9 2.3E-10 5.1E-15 112.8 1.1 128 644-778 286-414 (490)
34 KOG4658 Apoptotic ATPase [Sign 98.9 6E-10 1.3E-14 133.6 3.0 204 87-296 520-731 (889)
35 KOG3207 Beta-tubulin folding c 98.9 3.9E-10 8.4E-15 117.5 1.0 110 208-317 119-233 (505)
36 KOG1259 Nischarin, modulator o 98.8 9E-10 2E-14 108.7 1.0 128 187-320 285-413 (490)
37 PF14580 LRR_9: Leucine-rich r 98.8 3.3E-09 7.1E-14 101.6 3.8 108 592-703 17-126 (175)
38 PF14580 LRR_9: Leucine-rich r 98.8 4.4E-09 9.4E-14 100.8 4.6 83 208-295 17-101 (175)
39 KOG0531 Protein phosphatase 1, 98.8 6.6E-10 1.4E-14 125.3 -1.3 196 615-824 92-290 (414)
40 PF08263 LRRNT_2: Leucine rich 98.7 1.5E-08 3.3E-13 72.4 4.3 39 24-62 2-43 (43)
41 KOG0531 Protein phosphatase 1, 98.7 3.3E-09 7.1E-14 119.7 1.3 197 617-826 71-270 (414)
42 PF13855 LRR_8: Leucine rich r 98.6 3.5E-08 7.6E-13 77.4 3.7 55 669-723 4-58 (61)
43 PF13855 LRR_8: Leucine rich r 98.6 4.3E-08 9.3E-13 76.9 3.8 59 643-701 2-60 (61)
44 KOG2120 SCF ubiquitin ligase, 98.4 5.6E-09 1.2E-13 103.3 -7.6 179 91-292 186-373 (419)
45 KOG2120 SCF ubiquitin ligase, 98.3 9.9E-09 2.2E-13 101.6 -7.7 36 160-195 208-243 (419)
46 KOG1859 Leucine-rich repeat pr 98.2 1.7E-08 3.7E-13 111.5 -8.6 19 542-560 104-122 (1096)
47 KOG4579 Leucine-rich repeat (L 98.2 1.2E-07 2.7E-12 83.1 -2.8 115 715-833 54-168 (177)
48 KOG1859 Leucine-rich repeat pr 98.2 2.5E-07 5.5E-12 102.5 -1.5 125 644-775 166-291 (1096)
49 KOG2982 Uncharacterized conser 98.1 8.3E-07 1.8E-11 88.3 1.5 187 257-464 70-262 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.1 1.8E-07 3.8E-12 91.7 -3.6 197 66-273 30-257 (388)
51 KOG2982 Uncharacterized conser 98.0 6.2E-07 1.3E-11 89.2 -1.5 58 353-410 222-286 (418)
52 KOG4579 Leucine-rich repeat (L 98.0 8.3E-07 1.8E-11 78.0 -1.2 89 666-757 53-141 (177)
53 COG5238 RNA1 Ran GTPase-activa 97.9 3.2E-06 6.9E-11 83.1 -0.1 199 109-321 25-257 (388)
54 PRK15386 type III secretion pr 97.6 0.00022 4.7E-09 77.2 9.0 58 85-148 47-104 (426)
55 PF12799 LRR_4: Leucine Rich r 97.5 8.4E-05 1.8E-09 53.1 2.8 37 787-824 1-37 (44)
56 KOG3665 ZYG-1-like serine/thre 97.4 2.8E-05 6.1E-10 91.5 -0.3 124 209-334 147-278 (699)
57 PF12799 LRR_4: Leucine Rich r 97.4 0.00012 2.7E-09 52.3 3.0 36 91-127 2-37 (44)
58 KOG3665 ZYG-1-like serine/thre 97.4 5.1E-05 1.1E-09 89.4 1.2 106 139-246 123-232 (699)
59 PRK15386 type III secretion pr 97.3 0.00038 8.3E-09 75.3 6.8 75 638-725 48-123 (426)
60 KOG4341 F-box protein containi 97.3 7.9E-06 1.7E-10 85.6 -5.8 58 115-172 139-200 (483)
61 PF13306 LRR_5: Leucine rich r 97.3 0.00073 1.6E-08 62.5 7.1 104 614-722 8-111 (129)
62 KOG4341 F-box protein containi 97.2 9.6E-06 2.1E-10 85.0 -6.5 295 90-386 138-459 (483)
63 KOG1644 U2-associated snRNP A' 97.2 0.0006 1.3E-08 64.8 5.8 56 236-293 44-99 (233)
64 KOG1644 U2-associated snRNP A' 97.2 0.00055 1.2E-08 65.1 5.2 82 187-270 43-125 (233)
65 PF13306 LRR_5: Leucine rich r 97.1 0.00082 1.8E-08 62.1 6.0 123 588-716 6-128 (129)
66 KOG2739 Leucine-rich acidic nu 96.4 0.0028 6E-08 63.3 3.3 66 662-727 61-129 (260)
67 KOG2739 Leucine-rich acidic nu 96.4 0.0021 4.5E-08 64.1 2.5 39 112-150 63-103 (260)
68 KOG2123 Uncharacterized conser 95.9 0.00049 1.1E-08 68.5 -4.2 63 280-344 39-101 (388)
69 KOG2123 Uncharacterized conser 95.9 0.0005 1.1E-08 68.4 -4.3 79 664-744 39-123 (388)
70 KOG1947 Leucine rich repeat pr 95.7 0.0013 2.8E-08 76.8 -2.9 110 161-270 187-307 (482)
71 KOG1947 Leucine rich repeat pr 95.4 0.0016 3.6E-08 75.9 -3.6 13 498-510 426-438 (482)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0077 1.7E-07 35.6 0.8 21 788-809 1-21 (22)
73 PF00560 LRR_1: Leucine Rich R 94.0 0.022 4.8E-07 33.7 0.8 19 740-759 2-20 (22)
74 KOG4308 LRR-containing protein 91.6 0.004 8.7E-08 70.4 -8.9 110 643-752 145-276 (478)
75 KOG4308 LRR-containing protein 91.3 0.0028 6E-08 71.7 -10.6 83 164-246 89-184 (478)
76 KOG0473 Leucine-rich repeat pr 90.4 0.035 7.6E-07 54.2 -2.4 87 710-800 38-124 (326)
77 KOG0473 Leucine-rich repeat pr 89.3 0.049 1.1E-06 53.2 -2.4 88 733-824 37-124 (326)
78 PF01102 Glycophorin_A: Glycop 86.4 0.4 8.7E-06 42.6 1.7 32 862-893 59-90 (122)
79 KOG3864 Uncharacterized conser 85.8 0.16 3.5E-06 48.9 -1.1 81 139-219 102-185 (221)
80 PF02439 Adeno_E3_CR2: Adenovi 85.7 0.75 1.6E-05 30.8 2.2 21 870-890 6-26 (38)
81 PF13504 LRR_7: Leucine rich r 85.6 0.47 1E-05 25.9 1.1 10 116-125 3-12 (17)
82 smart00369 LRR_TYP Leucine-ric 79.6 1.4 3E-05 27.1 1.7 17 786-802 1-17 (26)
83 smart00370 LRR Leucine-rich re 79.6 1.4 3E-05 27.1 1.7 17 786-802 1-17 (26)
84 smart00370 LRR Leucine-rich re 79.4 1.4 3E-05 27.2 1.7 22 185-206 1-22 (26)
85 smart00369 LRR_TYP Leucine-ric 79.4 1.4 3E-05 27.2 1.7 22 185-206 1-22 (26)
86 PF13516 LRR_6: Leucine Rich r 76.1 0.93 2E-05 27.3 0.2 16 738-753 2-17 (24)
87 KOG3864 Uncharacterized conser 74.5 0.63 1.4E-05 45.0 -1.3 33 284-316 103-135 (221)
88 PF08374 Protocadherin: Protoc 74.1 5.7 0.00012 38.7 4.9 11 869-879 40-50 (221)
89 PF15050 SCIMP: SCIMP protein 68.9 2.8 6.1E-05 36.1 1.5 19 880-898 19-37 (133)
90 PF01034 Syndecan: Syndecan do 66.0 2.3 5E-05 32.5 0.4 24 870-893 12-35 (64)
91 smart00365 LRR_SD22 Leucine-ri 63.6 6 0.00013 24.5 1.8 15 786-800 1-15 (26)
92 TIGR00864 PCC polycystin catio 60.6 6.2 0.00013 53.3 3.0 36 793-828 1-36 (2740)
93 PTZ00382 Variant-specific surf 60.3 6.2 0.00013 33.8 2.0 17 864-880 63-79 (96)
94 PF04478 Mid2: Mid2 like cell 59.7 5.2 0.00011 36.8 1.5 23 868-890 50-72 (154)
95 KOG4242 Predicted myosin-I-bin 53.7 63 0.0014 36.0 8.6 67 138-206 165-234 (553)
96 KOG4242 Predicted myosin-I-bin 52.5 57 0.0012 36.3 8.0 61 332-392 414-481 (553)
97 smart00368 LRR_RI Leucine rich 51.3 12 0.00026 23.6 1.7 14 787-800 2-15 (28)
98 smart00364 LRR_BAC Leucine-ric 44.3 16 0.00034 22.6 1.4 17 115-132 3-19 (26)
99 PF10873 DUF2668: Protein of u 43.6 39 0.00084 30.7 4.3 27 864-890 58-84 (155)
100 PF02009 Rifin_STEVOR: Rifin/s 43.0 18 0.0004 38.1 2.6 9 887-895 274-282 (299)
101 PF15069 FAM163: FAM163 family 37.6 90 0.002 28.6 5.6 25 871-895 7-31 (143)
102 PF05393 Hum_adeno_E3A: Human 33.0 50 0.0011 27.1 3.0 9 887-895 50-58 (94)
103 PTZ00370 STEVOR; Provisional 32.3 33 0.00072 35.3 2.4 10 891-900 279-288 (296)
104 PF01102 Glycophorin_A: Glycop 30.9 43 0.00092 30.1 2.6 31 870-900 63-94 (122)
105 TIGR00864 PCC polycystin catio 29.6 46 0.001 45.6 3.7 85 769-855 1-89 (2740)
106 TIGR01478 STEVOR variant surfa 29.5 46 0.00099 34.3 2.8 8 893-900 285-292 (295)
107 PTZ00046 rifin; Provisional 27.8 41 0.00088 36.2 2.2 12 886-897 332-343 (358)
108 PF06679 DUF1180: Protein of u 27.6 83 0.0018 29.9 4.0 8 923-930 154-161 (163)
109 TIGR01477 RIFIN variant surfac 27.4 42 0.00091 36.0 2.3 12 886-897 327-338 (353)
110 KOG3763 mRNA export factor TAP 27.0 34 0.00073 38.8 1.6 12 281-292 243-254 (585)
111 PHA03265 envelope glycoprotein 26.1 66 0.0014 34.0 3.3 27 869-895 349-375 (402)
112 KOG3653 Transforming growth fa 26.0 2.2E+02 0.0047 32.0 7.3 34 931-964 218-253 (534)
113 PF13908 Shisa: Wnt and FGF in 24.9 67 0.0014 31.3 3.1 7 871-877 79-85 (179)
114 PF05454 DAG1: Dystroglycan (D 24.7 24 0.00053 36.9 0.0 13 883-895 161-173 (290)
115 PF03302 VSP: Giardia variant- 23.8 61 0.0013 36.2 2.9 19 862-880 362-380 (397)
116 PF12768 Rax2: Cortical protei 23.3 2E+02 0.0043 30.4 6.3 20 866-885 226-245 (281)
117 PF05808 Podoplanin: Podoplani 22.2 29 0.00064 32.4 0.0 28 865-892 127-154 (162)
118 PF01299 Lamp: Lysosome-associ 21.0 27 0.00058 37.5 -0.6 24 870-893 273-296 (306)
119 PF04689 S1FA: DNA binding pro 20.5 2.2E+02 0.0047 21.9 4.1 14 864-877 10-23 (69)
120 smart00367 LRR_CC Leucine-rich 20.2 73 0.0016 19.4 1.5 13 354-366 1-13 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-72 Score=709.34 Aligned_cols=586 Identities=39% Similarity=0.623 Sum_probs=390.4
Q ss_pred hhcCChHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECC
Q 036729 19 ALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLS 98 (970)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls 98 (970)
.+...++|+.||++||+++.+|.+.+.+|...++||.|.||+|++ .++|+.|+|+++.++|.++..|..+++|++|+|+
T Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls 101 (968)
T PLN00113 23 FSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS 101 (968)
T ss_pred ccCCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECC
Confidence 344467899999999999988877889998788999999999984 5799999999999999999999999999999999
Q ss_pred CCCCCCCCCcccc-CCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccC
Q 036729 99 SNSLTGLIPSELG-QLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGS 177 (970)
Q Consensus 99 ~n~~~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~ 177 (970)
+|.+.+.+|..+. .+++||+|+|++|.+++.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.
T Consensus 102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 9999999998765 899999999999999988885 4578888888888888777777777777777777777766666
Q ss_pred CCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCC
Q 036729 178 IPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHL 257 (970)
Q Consensus 178 ~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 257 (970)
+|..++++++|++|++++|.+++..|. .++.+++|++|++++|.+++.+|..++++
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~------------------------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPR------------------------ELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCCh------------------------HHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 666666666666666666665555444 44455555555555555555555555566
Q ss_pred CCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEE
Q 036729 258 FNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLI 337 (970)
Q Consensus 258 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 337 (970)
++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+..+++|+
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---------------------------- 287 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI---------------------------- 287 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC----------------------------
Confidence 6666666666666666666666666666666666555443333333222222
Q ss_pred ccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccc
Q 036729 338 LARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITG 417 (970)
Q Consensus 338 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 417 (970)
+|++++|.+.+.+|.. +.++++|+.|++++|.+.+
T Consensus 288 ---------------------~L~Ls~n~l~~~~p~~------------------------~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 288 ---------------------SLDLSDNSLSGEIPEL------------------------VIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred ---------------------EEECcCCeeccCCChh------------------------HcCCCCCcEEECCCCccCC
Confidence 2222222222222222 2222233333333333332
Q ss_pred cCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccc
Q 036729 418 KIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGY 497 (970)
Q Consensus 418 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 497 (970)
.+|.. +..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+
T Consensus 323 ~~~~~------------------------~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~-- 376 (968)
T PLN00113 323 KIPVA------------------------LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL-- 376 (968)
T ss_pred cCChh------------------------HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH--
Confidence 22222 2233333334443333333333333333333333333333222211111
Q ss_pred cccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEEC
Q 036729 498 CKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDL 577 (970)
Q Consensus 498 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l 577 (970)
T Consensus 377 -------------------------------------------------------------------------------- 376 (968)
T PLN00113 377 -------------------------------------------------------------------------------- 376 (968)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCC
Q 036729 578 TNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGT 657 (970)
Q Consensus 578 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 657 (970)
..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|.+++.
T Consensus 377 -------------~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 377 -------------CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred -------------hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 1112223333333333344455555566666677777766666666666666666666666666665
Q ss_pred ccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcc
Q 036729 658 IPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQC 737 (970)
Q Consensus 658 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 737 (970)
+|..+..+++|+.|++++|++.+.+| ..+ ..++|+.|++++|++++.+|..+.++
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p------------------------~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLP------------------------DSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecC------------------------ccc-ccccceEEECcCCccCCccChhhhhh
Confidence 55555555555555555555554444 332 23566667777777777777777777
Q ss_pred cCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEe
Q 036729 738 KKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLN 817 (970)
Q Consensus 738 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ 817 (970)
++|+.|+|++|++++.+|..++.++.|+. |++++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|++++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVS-LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCE-EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 77778888888888888888888888887 88888888889999999999999999999999999999999999999999
Q ss_pred cCCCcccccCC--ccccCCCCcccCCCCCCCCCC
Q 036729 818 LSNNHLQGQLP--LTFSGFPLSSFLGNAKLCGPP 849 (970)
Q Consensus 818 ls~N~l~g~~p--~~~~~~~~~~~~~n~~lc~~~ 849 (970)
+++|+++|.+| ++|..+...++.||+.+||.+
T Consensus 578 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999 667788888999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.2e-58 Score=576.14 Aligned_cols=511 Identities=36% Similarity=0.599 Sum_probs=410.4
Q ss_pred CCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccc-cccccccccCCcccccCCCCcCCCCcCCCCeeec
Q 036729 332 SLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLD-KLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFL 410 (970)
Q Consensus 332 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 410 (970)
+++.|++++|.+.+..+..+..+++|+.|++++|++.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence 344444444444444444555566666666666666555554433 566666666666666655553 34566677777
Q ss_pred ccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCC
Q 036729 411 FDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGP 490 (970)
Q Consensus 411 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 490 (970)
++|.+++.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 77766666666666677777777777776666666677777777777777777766677777777777777777777777
Q ss_pred CCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccC-CCCCC
Q 036729 491 IPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY-PLTGS 569 (970)
Q Consensus 491 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~ 569 (970)
+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..+ .+..+
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777776655 45667
Q ss_pred CcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEc
Q 036729 570 NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLL 649 (970)
Q Consensus 570 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L 649 (970)
++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+++|+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 78888888888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccc
Q 036729 650 SNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729 (970)
Q Consensus 650 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 729 (970)
++|++.+.+|.++..+++|+.|++++|++++.+|..|..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred cchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCC
Q 036729 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGK 809 (970)
Q Consensus 730 ~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 809 (970)
+|..+ ..++|+.|++++|++++.+|..+..++.|+. |++++|.++|.+|..++++++|++|++++|+++|.+|..+..
T Consensus 468 ~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 545 (968)
T PLN00113 468 LPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQ-LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545 (968)
T ss_pred cCccc-ccccceEEECcCCccCCccChhhhhhhccCE-EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence 98766 4589999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred CCcCcEEecCCCcccccCCccccCCC---CcccCCCCCCC
Q 036729 810 LTSLHVLNLSNNHLQGQLPLTFSGFP---LSSFLGNAKLC 846 (970)
Q Consensus 810 l~~L~~l~ls~N~l~g~~p~~~~~~~---~~~~~~n~~lc 846 (970)
+++|+.||+++|+++|.+|..+.... .....+|+..+
T Consensus 546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999999999996655433 23455665444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-36 Score=319.68 Aligned_cols=373 Identities=23% Similarity=0.233 Sum_probs=327.3
Q ss_pred CCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccc
Q 036729 453 LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYN 532 (970)
Q Consensus 453 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 532 (970)
-+.||+++|.+...-+..|.++++|+.+++..|.++ .+|.......+++.|+|.+|.++.+....+..++.|+.||++.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 356788888887777777788888888888888777 4566555556688888888888877777888888888888888
Q ss_pred cccccCCCccccCCCCCcEEEccccccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCC
Q 036729 533 NSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP 611 (970)
Q Consensus 533 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 611 (970)
|.++......|..-.++++|++++|+++.... .|.++.+|..|.++.|+++...+..|.+++.|+.|+|..|++.-.--
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 88887766777777788889999998876433 67788899999999999998888888899999999999999875445
Q ss_pred cccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCc
Q 036729 612 SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSK 691 (970)
Q Consensus 612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 691 (970)
..|.++++|+.|.+..|.+...-...|..|.++++|+|+.|++...-..|+-+++.|+.|++|.|.+..+.++.+..+++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 68999999999999999999888888999999999999999999888899999999999999999999999999999999
Q ss_pred ceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCch---hhhhhhhhHhhh
Q 036729 692 LLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA---DLGRLTELQVIL 768 (970)
Q Consensus 692 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~---~l~~l~~L~~~L 768 (970)
|++|+|++|+++...+..|..|..|+.|.|+.|.+...-...|..+++|++|||++|.+++.|.+ .|..++.|+. |
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk-L 397 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK-L 397 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh-e
Confidence 99999999999999899999999999999999999988888899999999999999999987764 4677999998 9
Q ss_pred hCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 769 DLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 769 ~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+|.+|++...-..+|..+..||.|||.+|.|-...|.+|..+ .|+.|-+..-.+-|.|.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 999999997666899999999999999999999999999999 89999999888888887
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-37 Score=321.63 Aligned_cols=362 Identities=23% Similarity=0.270 Sum_probs=183.3
Q ss_pred CEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccc
Q 036729 358 QQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDN 437 (970)
Q Consensus 358 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 437 (970)
+.|++++|.+....+..|.++++|+.+++..|.++ .+|...+...+|+.|+|.+|.++..-...+..++.|+.|+|+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34566666555555555555555555555555555 44444444444555555555555444445555555555555555
Q ss_pred cCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCc
Q 036729 438 QMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL 517 (970)
Q Consensus 438 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~ 517 (970)
.++..--..|..-.++++|++++|.|+..-...|..+.+|..|.|+.|.++...+..|..+++|+.|+|..|++.-....
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 55544333444444555555555555555445555555555555555555544444555555555555555555544444
Q ss_pred chhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCC
Q 036729 518 TFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNL 596 (970)
Q Consensus 518 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 596 (970)
.|.++++|+.|.+..|.+...-...|..+.+++.|+++.|++...-. .+.++++|+.|++++|.+..+-++.+..+++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 55555555555555555555444555555555555555555443222 34444555555555555544444445555555
Q ss_pred CceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccc---cccccCccceEEc
Q 036729 597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPF---WLGSLQEIGELDL 673 (970)
Q Consensus 597 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L 673 (970)
++|+|++|+++...+..|..+..|++|.|++|+++..-...|..+++|++|+|++|.++..+.+ .|.++++|+.|++
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 5555555555544444444555555555555554444444444445555555555544443322 2334444444455
Q ss_pred ccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceecc
Q 036729 674 SSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNL 721 (970)
Q Consensus 674 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 721 (970)
.+|++..+...+|.++.+|+.|||.+|.|..+-|..|..+ .|+.|.+
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 5544444333444444444444444444444444444444 4444433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5e-39 Score=323.52 Aligned_cols=495 Identities=28% Similarity=0.393 Sum_probs=237.5
Q ss_pred CCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEE
Q 036729 232 LLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETL 311 (970)
Q Consensus 232 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 311 (970)
.-..|+.|.+++|.+. .+-..+.++..|.+|++++|+++ ..|++++.+..++.++.++|++.. +|..+..+.+|..+
T Consensus 43 ~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKL 119 (565)
T ss_pred hhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhh
Confidence 3445566666666655 23344566666666666666665 345556666666666666666653 34445556666666
Q ss_pred EccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccc
Q 036729 312 VLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391 (970)
Q Consensus 312 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 391 (970)
++++|.+. .+|+.++. +..++.++..+|++. ..|..+..|.++..+++.+|.+....|+.+. ++.|++++...|-+
T Consensus 120 ~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 120 DCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLL 195 (565)
T ss_pred hcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhh
Confidence 66666665 23333331 333444444444443 2334444555566666666665544333333 55666666555555
Q ss_pred cCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcc-cccCCCCCEEeccccccCCccccc
Q 036729 392 TGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHFSGSIPET 470 (970)
Q Consensus 392 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~ 470 (970)
. .+|+.++.+.+|+.|++..|.+. .+| .|..+..|++++++.|++. .+|.+ ..+++++..||++.|++. ..|+.
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchH
Confidence 4 55555566666666666666554 333 4555555555555555554 23332 235555555555555554 44555
Q ss_pred ccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCc
Q 036729 471 MGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLR 550 (970)
Q Consensus 471 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 550 (970)
+.-+++|.+||+++|.+++ .|..++++ .|+.|.+.+|.+..+-.+.+..-+ - .. ++.|+
T Consensus 271 ~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT-~---------------~v---LKyLr 329 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGT-Q---------------EV---LKYLR 329 (565)
T ss_pred HHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccH-H---------------HH---HHHHH
Confidence 5555555555555555553 34445555 555555555554321111000000 0 00 00000
Q ss_pred EEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCC---CcEEEccC
Q 036729 551 IINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTE---LNFLDLSF 627 (970)
Q Consensus 551 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~Ls~ 627 (970)
. .+..-.++.. .-.+-..-+.. ...........+.+.|+++.-+++ .+|+....-.. ....+++.
T Consensus 330 s-~~~~dglS~s-----e~~~e~~~t~~-----~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 330 S-KIKDDGLSQS-----EGGTETAMTLP-----SESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred H-hhccCCCCCC-----cccccccCCCC-----CCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEeccc
Confidence 0 0000000000 00000000000 001111223344555566555555 34443332222 55566666
Q ss_pred CcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC
Q 036729 628 NSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP 707 (970)
Q Consensus 628 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 707 (970)
|++. .+|..+..+..+.+.-+..|+..+.+|..+..+++|..|+|++|-+. .+|..++.+-.|+.|+++.|++. .+|
T Consensus 398 NqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP 474 (565)
T KOG0472|consen 398 NQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLP 474 (565)
T ss_pred chHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cch
Confidence 6665 45555555544444333333334455555555666666666555544 34444555555555555555554 344
Q ss_pred cccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCC
Q 036729 708 PEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL 787 (970)
Q Consensus 708 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~ 787 (970)
.++..+..++.+-.++|++....|+.+.++.+|+.|||.+| .+. .||+.+++++
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-------------------------dlq-~IPp~Lgnmt 528 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-------------------------DLQ-QIPPILGNMT 528 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-------------------------chh-hCChhhcccc
Confidence 44444444444444445554444444444444444444444 443 4555555555
Q ss_pred CCCEEeCCCCcCc
Q 036729 788 KLERLNISYNQLQ 800 (970)
Q Consensus 788 ~L~~L~ls~N~l~ 800 (970)
+|++|++++|.+.
T Consensus 529 nL~hLeL~gNpfr 541 (565)
T KOG0472|consen 529 NLRHLELDGNPFR 541 (565)
T ss_pred ceeEEEecCCccC
Confidence 5555555555554
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-38 Score=316.88 Aligned_cols=492 Identities=29% Similarity=0.368 Sum_probs=254.1
Q ss_pred CCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhh
Q 036729 89 LTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELA 168 (970)
Q Consensus 89 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 168 (970)
-..|+.|++++|.+. .+.+.+.++..|.+|++++|.+. .+|++++.+..++.++.++|++ ..+|+.++.+.+|++++
T Consensus 44 qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLD 120 (565)
T ss_pred hcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhh
Confidence 345677777777776 33445667777777777777776 6666777777777777777766 35666677777777777
Q ss_pred ccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCcc
Q 036729 169 IAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG 248 (970)
Q Consensus 169 L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 248 (970)
.++|.+. .+|++++.+..|..|+..+|+++.. |+++..+.+|..+++.+|.+....|. .-+++.|++||.-.|-++
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQISSL-PEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE- 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccccC-chHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-
Confidence 7777665 5555666666666666666666533 44444555555555555555422222 222445555554444433
Q ss_pred ccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhc
Q 036729 249 SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCL 328 (970)
Q Consensus 249 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 328 (970)
. +|+.++.+.+|+.|++.+|.+... | .|..|..|++++++.|.+. .+|.+.+.
T Consensus 197 t------------------------lP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~-~lpae~~~ 249 (565)
T KOG0472|consen 197 T------------------------LPPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIE-MLPAEHLK 249 (565)
T ss_pred c------------------------CChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHH-hhHHHHhc
Confidence 3 344455555555555555554422 2 4555555555555555554 55666665
Q ss_pred CCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcC---CC
Q 036729 329 NNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLS---KL 405 (970)
Q Consensus 329 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~---~L 405 (970)
+++++..||++.|+++ ..|..+.-+.+|++||+|+|.++ ..|..++++ +|+.|.+.+|++.. +-..+-+.. -|
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vL 325 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVL 325 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHH
Confidence 5555555555555554 34444445666666666666666 345556666 66666666666541 111111110 01
Q ss_pred CeeecccccccccCCccccCCCCCCEEEccccc-CCCcCCcccccCCCCCEEeccccccCCcccccccCC--CCccEEee
Q 036729 406 ENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQ-MSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKL--KNLVILQL 482 (970)
Q Consensus 406 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L 482 (970)
++|.= .+...- +.+- +.=.-..-. ..+..| ......+.+.|++++-+++....+.|..- .-....++
T Consensus 326 KyLrs---~~~~dg---lS~s---e~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 326 KYLRS---KIKDDG---LSQS---EGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HHHHH---hhccCC---CCCC---cccccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence 11110 000000 0000 000000000 000001 11223345555555555553322223211 12445556
Q ss_pred ccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccc
Q 036729 483 RQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGS 562 (970)
Q Consensus 483 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 562 (970)
+.|++. .+|..+..+..+...-+..|+..+.+|..+..+++|..|++++|.+. .+|..++.+..|+.++++.|+|.
T Consensus 396 skNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-- 471 (565)
T KOG0472|consen 396 SKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-- 471 (565)
T ss_pred ccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc--
Confidence 666555 34444444444433333333333344444444455555555444433 23444444444444444444432
Q ss_pred cCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcC
Q 036729 563 IYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCA 642 (970)
Q Consensus 563 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~ 642 (970)
..|.++.....++.+-.++|++....|+.+.+|.+|..||+.+|.+. .+|+.+++|+
T Consensus 472 ----------------------~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt 528 (565)
T KOG0472|consen 472 ----------------------MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT 528 (565)
T ss_pred ----------------------cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence 35555555555666666667776555556777777777777777766 4566677777
Q ss_pred cccEEEccCCccc
Q 036729 643 KLAHLLLSNNELT 655 (970)
Q Consensus 643 ~L~~L~L~~n~l~ 655 (970)
+|++|.+.+|.|.
T Consensus 529 nL~hLeL~gNpfr 541 (565)
T KOG0472|consen 529 NLRHLELDGNPFR 541 (565)
T ss_pred ceeEEEecCCccC
Confidence 7777777777665
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-36 Score=330.17 Aligned_cols=464 Identities=27% Similarity=0.336 Sum_probs=356.3
Q ss_pred CcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeeccc
Q 036729 333 LQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFD 412 (970)
Q Consensus 333 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 412 (970)
++.|+++.|.+.....+....+-+|+.|++++|++. ..|..+..+.+|+.|.++.|-+. ..|....++.+|+++.|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 555555555444332333334555777777777765 56667777777888888877776 5666777778888888887
Q ss_pred ccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCC
Q 036729 413 NMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIP 492 (970)
Q Consensus 413 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 492 (970)
|.+. ..|..+..+.+|++|+++.|++. .+|..+..++.++.++.++|......+ ... .+.+++..|.+.+.++
T Consensus 101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg----~~~-ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG----QTS-IKKLDLRLNVLGGSFL 173 (1081)
T ss_pred chhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc----ccc-chhhhhhhhhcccchh
Confidence 7776 67777788888888888888775 667777777888888888773222222 222 6677777777777777
Q ss_pred CcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcc
Q 036729 493 ASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSL 572 (970)
Q Consensus 493 ~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L 572 (970)
..+..+.. .+++.+|.+. ......+.+|+.+....|++.... ..-++++.|+.++|.++ ....-....+|
T Consensus 174 ~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p~p~nl 243 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHPVPLNL 243 (1081)
T ss_pred cchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eeccccccccc
Confidence 77766665 6888888876 233556677777777777765431 23467888999999887 33334445689
Q ss_pred cEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCC
Q 036729 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652 (970)
Q Consensus 573 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 652 (970)
+.+++++|++++ +|.++..|.+|+.++..+|+++ .+|..+...++|+.|++..|.+. .+|+.....++|++|+|..|
T Consensus 244 ~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 244 QYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence 999999999986 4599999999999999999995 78888899999999999999998 56777788999999999999
Q ss_pred cccCCccccccccCc-cceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccc
Q 036729 653 ELTGTIPFWLGSLQE-IGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP 731 (970)
Q Consensus 653 ~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p 731 (970)
++....+..+.-+.. |..|..+.|++....-..=...+.|+.|++.+|.++...-+.+.+.+.|+.|+|++|++.....
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 998655544444444 7788888888875432222357789999999999998888889999999999999999987777
Q ss_pred hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC
Q 036729 732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT 811 (970)
Q Consensus 732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~ 811 (970)
..+.++..|++|+||+|+++ .+|..+..+..|++ |...+|.+. ..| .+.++++|+.+|+|.|+|+...-.....-+
T Consensus 401 s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t-L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p 476 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT-LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP 476 (1081)
T ss_pred HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH-HhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence 78899999999999999999 88999999999998 999999998 566 899999999999999999876443333448
Q ss_pred cCcEEecCCCc
Q 036729 812 SLHVLNLSNNH 822 (970)
Q Consensus 812 ~L~~l~ls~N~ 822 (970)
.|++||+++|.
T Consensus 477 ~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 477 NLKYLDLSGNT 487 (1081)
T ss_pred ccceeeccCCc
Confidence 99999999997
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=6.6e-34 Score=315.70 Aligned_cols=506 Identities=27% Similarity=0.318 Sum_probs=319.9
Q ss_pred EEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCc
Q 036729 263 LNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNK 342 (970)
Q Consensus 263 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 342 (970)
+|++.+++. .+|..+-.-..++.|++..|.+-..+-+.....-+|+.|++++|.+. ..|..+.. ...|+.|.++.|.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~-l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITL-LSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhh-HHHHhhcccchhh
Confidence 445555554 44544444444777777777655433233333444777777777665 44544442 4555666666555
Q ss_pred CCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCcc
Q 036729 343 LSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVE 422 (970)
Q Consensus 343 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 422 (970)
+. ..|....++.+|+++.|.+|.+. ..|..+..+++|+.|+++.|.+. .+|..+..++.++.+..++|.....
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~---- 152 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR---- 152 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----
Confidence 54 23345555555666666555554 45555555555666666655554 4555555555555555555522111
Q ss_pred ccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCccccccccc
Q 036729 423 IGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQ 502 (970)
Q Consensus 423 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 502 (970)
+++.. ++.+++..|.+.+.++..+..+.. .||+++|.+. . -.+..+.+|+.+....|+++... ..-+
T Consensus 153 lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~--- 219 (1081)
T KOG0618|consen 153 LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGP--- 219 (1081)
T ss_pred hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCc---
Confidence 11111 445555555555544444444433 4555555544 1 12333444444444444443210 1223
Q ss_pred EEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCC
Q 036729 503 QIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSF 582 (970)
Q Consensus 503 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l 582 (970)
+++.|+.+.|.++...+ .....+|++++++.|++++...-+..+.+|+.++..+|.+
T Consensus 220 ---------------------~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 220 ---------------------SLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred ---------------------chheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence 44444444554442211 1123455566666666654444445556666666666666
Q ss_pred CCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCc-ccEEEccCCcccCCcccc
Q 036729 583 SGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAK-LAHLLLSNNELTGTIPFW 661 (970)
Q Consensus 583 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~-L~~L~L~~n~l~~~~p~~ 661 (970)
+ .+|..+....+|+.+.+.+|.+. .+|.....+++|++|||..|++....+..+.-... |..|+.+.|++....-..
T Consensus 277 ~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~ 354 (1081)
T KOG0618|consen 277 V-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE 354 (1081)
T ss_pred H-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence 3 46777777788888888888887 56667777889999999999888544433443333 777788888876443222
Q ss_pred ccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCc
Q 036729 662 LGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY 741 (970)
Q Consensus 662 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 741 (970)
=...+.|+.|++.+|.++...-+.+.+..+|+.|+|++|++.......+.++..|+.|+|++|+++ .+|.++.++..|+
T Consensus 355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH 433 (1081)
T ss_pred chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence 234678999999999999877677889999999999999998655567889999999999999997 5679999999999
Q ss_pred EEECccccccccCchhhhhhhhhHhhhhCCCCccccc-CCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCC
Q 036729 742 ELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGE-IPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSN 820 (970)
Q Consensus 742 ~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~-ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~ 820 (970)
+|...+|++. ..| ++.+++.|+. +|+|.|+++.. +|..... ++|++|||++|.-.-.--+.|..+.++..+++.-
T Consensus 434 tL~ahsN~l~-~fP-e~~~l~qL~~-lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 434 TLRAHSNQLL-SFP-ELAQLPQLKV-LDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred HHhhcCCcee-ech-hhhhcCcceE-EecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence 9999999998 677 8999999998 99999999854 4444333 8999999999975434445666777788888877
Q ss_pred C
Q 036729 821 N 821 (970)
Q Consensus 821 N 821 (970)
|
T Consensus 510 ~ 510 (1081)
T KOG0618|consen 510 N 510 (1081)
T ss_pred C
Confidence 7
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-32 Score=291.30 Aligned_cols=366 Identities=29% Similarity=0.439 Sum_probs=260.5
Q ss_pred CEEeccccccC-CcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccc
Q 036729 454 TEIDFFGNHFS-GSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYN 532 (970)
Q Consensus 454 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 532 (970)
+-+|+++|.++ +..|.....+++++.|.|...++. .+|..++.+.+|+.|.+++|++... -..+..++.|+.+++..
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRD 87 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhc
Confidence 33444444444 234444444444444444444443 3444445555555555555544321 12234455555555555
Q ss_pred ccccc-CCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCC
Q 036729 533 NSFKG-PLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP 611 (970)
Q Consensus 533 n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 611 (970)
|++.. -+|..+..+..|+.||+|+|++......+...+++-+|++++|++..+....|.+++.|-.||||+|++. .+|
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LP 166 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLP 166 (1255)
T ss_pred cccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcC
Confidence 55543 3666777778888888888888765556777777788888888887655566777888888888888887 567
Q ss_pred cccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCccc-CCccccccccCccceEEcccCcCcCCCCCCCCCCC
Q 036729 612 SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELT-GTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCS 690 (970)
Q Consensus 612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 690 (970)
..+..+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|..+..+.+|..+|+|.|.+. ..|..+.++.
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~ 245 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR 245 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh
Confidence 77888888888888888876555556667788888888876643 457888888888888888888887 7788888888
Q ss_pred cceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccc-cCchhhhhhhhhHhhhh
Q 036729 691 KLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG-SIPADLGRLTELQVILD 769 (970)
Q Consensus 691 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~~L~ 769 (970)
+|+.|+|++|+|+.. ........+|++|+++.|+++ .+|+.+..++.|+.|++.+|+++- -||..+|.+..|+. +.
T Consensus 246 ~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev-f~ 322 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV-FH 322 (1255)
T ss_pred hhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH-HH
Confidence 888888888888743 334556677888888888887 677888888888888888888763 57888888888887 88
Q ss_pred CCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 770 LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 770 ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
.++|.+. ..|..+..+..|+.|.|++|++. .+|+++.-++.|++||+..|+---..|
T Consensus 323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 8888887 77888888888888888888886 578888888888888888886543333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-32 Score=289.85 Aligned_cols=364 Identities=28% Similarity=0.403 Sum_probs=220.2
Q ss_pred CCCCcEEECCCCCCCC-CCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchh
Q 036729 89 LTSLETLDLSSNSLTG-LIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELREL 167 (970)
Q Consensus 89 l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 167 (970)
++..+-.|+++|.++| .+|.....+++++.|.|....+. .+|+.++.|.+|++|.+++|++. .+-..+..++.||.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 4445555666666653 35666666666666666666655 56666666666666666666543 223345556666666
Q ss_pred hcccccccc-CCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcc-cccCCCCCcEEEccCCc
Q 036729 168 AIAYCQLNG-SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPS-SIVLLKSLQILNLANNS 245 (970)
Q Consensus 168 ~L~~~~~~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~ 245 (970)
.+..|++.. -+|..+.++..|+.||||+|++. ..|..+...+++-+|++++|++. .+|. -+.+++.|-.|||++|+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 666666542 35556666666666666666665 33555666666666666666665 3333 33466666666666666
Q ss_pred CccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCc-cccccccCCCCCccEEEccCCcccCCCch
Q 036729 246 LSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLS-GSISLLNTQLKNLETLVLSDNAFTGSIPI 324 (970)
Q Consensus 246 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 324 (970)
+. .+|+.+..+.+|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|..+..+.+|..++++.|.+. .+|.
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 65 44555666666666666666554333333444556666666655432 235555666666666666666665 4455
Q ss_pred hhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccC-CCCcCCCCcC
Q 036729 325 KFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTG-SFPPEIGNLS 403 (970)
Q Consensus 325 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~ 403 (970)
.+.. .++|+.|+|++|.++. +........+|++|++|.|+++ .+|+++..++.|+.|.+.+|+++- -+|+.++.+.
T Consensus 240 cly~-l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 240 CLYK-LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHhh-hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 4442 5555555555555542 1222334566777777777776 667777777777777777777652 3666677777
Q ss_pred CCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEecccccc
Q 036729 404 KLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHF 463 (970)
Q Consensus 404 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 463 (970)
+|+.+..++|.+. .+|..+..+..|+.|.++.|.+. .+|..+.-++.|+.||+..|.-
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 7777777777665 66667777777777777777665 4566666666677777766653
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.1e-21 Score=246.90 Aligned_cols=358 Identities=23% Similarity=0.285 Sum_probs=216.4
Q ss_pred CCEEEEECCCCCCcc--ccccCccCCCCCcEEECCCCCC------CCCCCccccCCC-CCcEeecCCCcCcCCCCcCCCC
Q 036729 66 KHVVGLNLSSSGLSG--SISRDFLNLTSLETLDLSSNSL------TGLIPSELGQLQ-NLRILLLYSNSFSGKIPPEIGF 136 (970)
Q Consensus 66 ~~v~~L~L~~~~l~~--~~~~~l~~l~~L~~L~Ls~n~~------~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~~ 136 (970)
.+|..+.+.-..+.. ..+..|.++++|+.|.+..+.. ...+|..+..++ +||+|++.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 456655554333321 1124567777788877765432 223555555553 4777777777665 566655 4
Q ss_pred CCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCccccccc
Q 036729 137 LNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFA 216 (970)
Q Consensus 137 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 216 (970)
..+|++|++.+|.+. .++..+..+++|++|+++++...+.+| .++.+++|++|++++|.....+|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 567777777776653 455555666666666666655444454 355566666666666554444555555555555555
Q ss_pred ccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCcc
Q 036729 217 ASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG 296 (970)
Q Consensus 217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 296 (970)
+++|..-+.+|..+ ++++|+.|++++|.....+|.. .++|++|++++|.+. .+|..+
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~------------------ 744 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL------------------ 744 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc------------------
Confidence 55544333444433 4455555555555433333321 234444444444443 223222
Q ss_pred ccccccCCCCCccEEEccCCccc---C---CCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCC
Q 036729 297 SISLLNTQLKNLETLVLSDNAFT---G---SIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGE 370 (970)
Q Consensus 297 ~~~~~~~~l~~L~~L~L~~n~l~---~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 370 (970)
.+++|++|++.++... + .++......+++|+.|++++|...+.+|..+.++++|+.|++++|...+.
T Consensus 745 -------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 745 -------RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred -------cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence 2344444444432110 0 11111122356788888888877777788888888888888888765556
Q ss_pred CCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccC
Q 036729 371 LPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC 450 (970)
Q Consensus 371 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 450 (970)
+|..+ .+++|+.|++++|.....+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..+
T Consensus 818 LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 818 LPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred eCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 66655 6788888888888655555543 357888999998887 578888889999999999876666677778888
Q ss_pred CCCCEEeccccc
Q 036729 451 SGLTEIDFFGNH 462 (970)
Q Consensus 451 ~~L~~L~l~~n~ 462 (970)
++|+.+++++|.
T Consensus 893 ~~L~~L~l~~C~ 904 (1153)
T PLN03210 893 KHLETVDFSDCG 904 (1153)
T ss_pred cCCCeeecCCCc
Confidence 899999888774
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.1e-21 Score=246.83 Aligned_cols=307 Identities=21% Similarity=0.242 Sum_probs=161.2
Q ss_pred cccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCC
Q 036729 500 RLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTN 579 (970)
Q Consensus 500 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~ 579 (970)
+|+.|.+.++.+. .+|..| ...+|..|++.+|.+.. ++..+..+++|+.++++++.....++.+..+++|+.|++++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecC
Confidence 3555555554443 233333 23455555555555442 33344455555666665554434444555555666666666
Q ss_pred CCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCcc
Q 036729 580 NSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIP 659 (970)
Q Consensus 580 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p 659 (970)
|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP 741 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFP 741 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccc
Confidence 55545555556666666666666654444455443 4566666666666544444432 234566666666654 334
Q ss_pred ccccccCccceEEcccCcC-------cCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccch
Q 036729 660 FWLGSLQEIGELDLSSNNF-------NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS 732 (970)
Q Consensus 660 ~~l~~l~~L~~L~Ls~N~l-------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~ 732 (970)
..+ .+++|++|++.++.. ....+..+..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus 742 ~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 742 SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 332 345555555554321 111111122345566666666655555666666666666666666544444554
Q ss_pred hhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCc
Q 036729 733 TIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTS 812 (970)
Q Consensus 733 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~ 812 (970)
.+ ++++|+.|++++|.....+|... ..++. |+|++|.++ .+|.++..+++|+.|++++|+--..+|..+..+++
T Consensus 821 ~~-~L~sL~~L~Ls~c~~L~~~p~~~---~nL~~-L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 821 GI-NLESLESLDLSGCSRLRTFPDIS---TNISD-LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred CC-CccccCEEECCCCCccccccccc---cccCE-eECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 43 45666666666654443444332 23444 566666665 45666666666666666664333345555566666
Q ss_pred CcEEecCCC
Q 036729 813 LHVLNLSNN 821 (970)
Q Consensus 813 L~~l~ls~N 821 (970)
|+.+++++|
T Consensus 895 L~~L~l~~C 903 (1153)
T PLN03210 895 LETVDFSDC 903 (1153)
T ss_pred CCeeecCCC
Confidence 666666655
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-23 Score=212.99 Aligned_cols=385 Identities=21% Similarity=0.268 Sum_probs=227.4
Q ss_pred CCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeecc-ccCCCCCCCcccccccccEEec
Q 036729 428 TLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQ-NDLSGPIPASLGYCKRLQQIAL 506 (970)
Q Consensus 428 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~L 506 (970)
.-..++|..|+|+.+.+..|+.+++|+.|||++|.|+.+.|++|.++++|..|-+.+ |+|+......|..+.+++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345667777777766667777777788888888888777777788877777766555 7777666667778888888888
Q ss_pred cCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcccccccccc-------------CCCCCCCccc
Q 036729 507 ADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSI-------------YPLTGSNSLT 573 (970)
Q Consensus 507 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-------------~~~~~~~~L~ 573 (970)
.-|++.......|..++++..|.+.+|.+....-..+..+..++.+.+..|.+...- ..+.+..-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 888888777778888888888888888777655556777777777777777643210 0112222122
Q ss_pred EEECCCCCCCCCCCcccccC-cCCCceeccCccccCCCC-cccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccC
Q 036729 574 ALDLTNNSFSGPIPSELAMS-RNLSRLRLAHNHLTGNIP-SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSN 651 (970)
Q Consensus 574 ~L~l~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~ 651 (970)
...+.+.++...-+..|... .++..-..+.+...+..| ..|..+++|++|+|++|+++++-+.+|.+...+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 22222222222222222111 111111122222333333 2466677777777777777776666777777777777777
Q ss_pred CcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCccc-----------------CCccccccc
Q 036729 652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGK-----------------IPPEIGNLT 714 (970)
Q Consensus 652 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-----------------~~~~l~~l~ 714 (970)
|++...-...|.++..|+.|+|.+|+++...|..|..+.+|.+|++-.|.+.-. .|.. +.-.
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C-q~p~ 386 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC-QSPG 386 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC-CCCc
Confidence 776655555666677777777777777776677777777777777666654310 0100 0111
Q ss_pred ccceeccCCCccc---cccchhh---------hcccCCcE-EECccccccccCchhhhhhhhhHhhhhCCCCcccccCCc
Q 036729 715 ALNVLNLQRNSLS---GNIPSTI---------QQCKKLYE-LRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP 781 (970)
Q Consensus 715 ~L~~L~L~~N~l~---~~~p~~~---------~~l~~L~~-L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~ 781 (970)
.++.++++...+. -..|++. ..++-+.+ ..-|+..++ .+|..+.. .-. .+.+.+|.++ .+|.
T Consensus 387 ~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP~--d~t-elyl~gn~~~-~vp~ 461 (498)
T KOG4237|consen 387 FVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIPV--DVT-ELYLDGNAIT-SVPD 461 (498)
T ss_pred hhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCCc--hhH-HHhcccchhc-ccCH
Confidence 2334444433321 1112111 11222221 122222222 33333221 111 2777888887 6666
Q ss_pred cccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCC
Q 036729 782 SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN 821 (970)
Q Consensus 782 ~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N 821 (970)
+ .+.+| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus 462 ~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 462 E--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred H--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 6 56677 8888888888777778888888888888887
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=1.6e-23 Score=211.95 Aligned_cols=413 Identities=22% Similarity=0.218 Sum_probs=208.8
Q ss_pred CCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeeccc-ccccccCCccccCCCCCCEEEc
Q 036729 356 SLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFD-NMITGKIPVEIGKLQTLSAIYL 434 (970)
Q Consensus 356 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l 434 (970)
.-++++|..|+|+...+.+|+.+++|+.|+|++|.|+.+-|.+|.++.+|.+|.+.+ |+++..-...|+.+..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456677777777766666677777777777777777666666666666666655544 5555443344555555555555
Q ss_pred ccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCc
Q 036729 435 YDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGS 514 (970)
Q Consensus 435 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 514 (970)
.-|++.-...+.|..++++..|.+..|.+..+-...|..+.+++.+.+..|.+.. ..+++.+.. ....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-------~~a~ 215 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-------DLAM 215 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh-------HHhh
Confidence 5555544444444455555555555554443322344444444444444443210 011111110 0011
Q ss_pred cCcchhcCCCCceEEccccccccCCCccccCC-CCCcEEEccccccccccC--CCCCCCcccEEECCCCCCCCCCCcccc
Q 036729 515 VPLTFRFLSELYLITLYNNSFKGPLPPSLFQL-KKLRIINFSHNKFSGSIY--PLTGSNSLTALDLTNNSFSGPIPSELA 591 (970)
Q Consensus 515 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~ 591 (970)
.|..+++........+.+.++..+.+..+... ..+..--.+.+...+.-| .|..+++|+.|++++|+++++-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 22223333333333333333333322222111 111111111111111111 345556666666666666666666666
Q ss_pred cCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCC-ccccccccCccce
Q 036729 592 MSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGT-IPFWLGSLQEIGE 670 (970)
Q Consensus 592 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~ 670 (970)
....++.|.|..|++...-...|.++..|+.|+|.+|+++-..|.+|....+|.+|++-.|.+... --.|++.
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~------ 369 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE------ 369 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH------
Confidence 666666666666665544444556666666666666666666666666666666666655544311 0011111
Q ss_pred EEcccCcCcCCCCCCCCCCCcceEEEccCCcCcc---cCCccc---------cccccccee-ccCCCccccccchhhhcc
Q 036729 671 LDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG---KIPPEI---------GNLTALNVL-NLQRNSLSGNIPSTIQQC 737 (970)
Q Consensus 671 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~---~~~~~l---------~~l~~L~~L-~L~~N~l~~~~p~~~~~l 737 (970)
++..+.-.|..| -+.-..++.+.++++.+.. ..|+.. ..++.+.+. ..++..+ ..+|..+ -
T Consensus 370 -Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l-k~lp~~i--P 443 (498)
T KOG4237|consen 370 -WLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL-KLLPRGI--P 443 (498)
T ss_pred -HHhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch-hhcCCCC--C
Confidence 111112111111 1122234445555443321 112211 223333332 2333333 2333322 1
Q ss_pred cCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCC
Q 036729 738 KKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN 797 (970)
Q Consensus 738 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N 797 (970)
...+++++.+|.++ .+|.+ .+..+ . +|+|+|+++-.--..|.++++|.+|-||+|
T Consensus 444 ~d~telyl~gn~~~-~vp~~--~~~~l-~-~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 444 VDVTELYLDGNAIT-SVPDE--LLRSL-L-LDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chhHHHhcccchhc-ccCHH--HHhhh-h-cccccCceehhhcccccchhhhheeEEecC
Confidence 34578999999999 78877 66677 4 999999999777789999999999999987
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.7e-20 Score=214.09 Aligned_cols=266 Identities=26% Similarity=0.364 Sum_probs=169.9
Q ss_pred CccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcc
Q 036729 476 NLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFS 555 (970)
Q Consensus 476 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 555 (970)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. .. ++|++|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp------------------------~~Lk~LdLs 250 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LP------------------------PELRTLEVS 250 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CC------------------------CCCcEEEec
Confidence 3456677777666 3455443 356666666666653 221 12 345555555
Q ss_pred ccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCc
Q 036729 556 HNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635 (970)
Q Consensus 556 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 635 (970)
+|+++.. +. ..++|+.|++++|.++. +|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++++. |
T Consensus 251 ~N~LtsL-P~--lp~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p 318 (788)
T PRK15387 251 GNQLTSL-PV--LPPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-P 318 (788)
T ss_pred CCccCcc-cC--cccccceeeccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-C
Confidence 5554422 21 12455566666665543 2221 2456677777777763 343 235678888888887753 3
Q ss_pred ccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccc
Q 036729 636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTA 715 (970)
Q Consensus 636 ~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 715 (970)
.. ..+|+.|++++|.+++ +|.. ..+|++|+|++|++++ +|.. .++|+.|++++|.++. +|.. .++
T Consensus 319 ~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~ 383 (788)
T PRK15387 319 AL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSG 383 (788)
T ss_pred CC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccc
Confidence 32 2357777888888774 3431 2468888888888884 4432 3567778888888874 4543 246
Q ss_pred cceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCC
Q 036729 716 LNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNIS 795 (970)
Q Consensus 716 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls 795 (970)
|+.|++++|++++ +|.. .++|+.|++++|++++ +|... ..|.. |++++|.++ .+|..+.++++|+.|+|+
T Consensus 384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~-L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLS-LSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhh-hhhccCccc-ccChHHhhccCCCeEECC
Confidence 8888888888875 4432 3568888999998884 66543 34566 888999988 688888888899999999
Q ss_pred CCcCccccCcccCC
Q 036729 796 YNQLQGQVPASLGK 809 (970)
Q Consensus 796 ~N~l~~~~p~~l~~ 809 (970)
+|+|+|.+|..+..
T Consensus 454 ~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 454 GNPLSERTLQALRE 467 (788)
T ss_pred CCCCCchHHHHHHH
Confidence 99998888877643
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=3.9e-20 Score=214.79 Aligned_cols=263 Identities=25% Similarity=0.300 Sum_probs=202.5
Q ss_pred CceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCc
Q 036729 525 LYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHN 604 (970)
Q Consensus 525 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n 604 (970)
-..|+++.+.++ .+|..+. .+|+.|++++|+++. ++. ..++|++|++++|+++.. |.. .++|+.|++++|
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccCcc-cCc---ccccceeeccCC
Confidence 445666666666 3454443 367888888888875 332 257899999999999854 532 468999999999
Q ss_pred cccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCC
Q 036729 605 HLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684 (970)
Q Consensus 605 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 684 (970)
.++. +|.. .++|+.|++++|+++. +|.. .++|+.|++++|++++. |.. ..+|+.|++++|++++ +|.
T Consensus 273 ~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 273 PLTH-LPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred chhh-hhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCccccC-CCC---cccccccccccCcccc-ccc
Confidence 9874 4443 3578899999999985 4432 46899999999999864 432 2468899999999985 553
Q ss_pred CCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhh
Q 036729 685 EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTEL 764 (970)
Q Consensus 685 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 764 (970)
. ..+|++|++++|++++ +|.. .++|+.|++++|+++. +|.. ..+|+.|++++|++++ +|... ..|
T Consensus 340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s~L 404 (788)
T PRK15387 340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---SEL 404 (788)
T ss_pred c---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---cCC
Confidence 2 2589999999999995 4543 2578889999999985 5543 3579999999999994 66543 456
Q ss_pred HhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCCccc
Q 036729 765 QVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTF 831 (970)
Q Consensus 765 ~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~~~ 831 (970)
+. |++++|.+++ +|... .+|+.|++++|+|+ .+|..+..++.|+.+++++|+|+|.+|..+
T Consensus 405 ~~-LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 405 KE-LMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CE-EEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 66 9999999995 77543 46889999999998 789999999999999999999999988554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.4e-18 Score=203.61 Aligned_cols=312 Identities=24% Similarity=0.364 Sum_probs=150.8
Q ss_pred CChHHHHHHHHHHhhCCCCCCCCC----CCCCCCCCCCccc----------------eEecCCCCCEEEEECCCCCCccc
Q 036729 22 GISTDSFWLLRIKQELVDPTGILE----NWSARAHMCSWHG----------------VTCSDDQKHVVGLNLSSSGLSGS 81 (970)
Q Consensus 22 ~~~~~~~~l~~~~~~~~~~~~~~~----~w~~~~~~c~w~g----------------v~c~~~~~~v~~L~L~~~~l~~~ 81 (970)
..+.+...+++..+.+..|. ... .|.+.++.|.-.. |.|. .+.||.+...+......
T Consensus 60 ~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~~~ 136 (754)
T PRK15370 60 ASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQASS 136 (754)
T ss_pred CCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCccccccccccccccc
Confidence 34567788999988887762 344 4998899997544 5664 45677776654322111
Q ss_pred ccc--C--------------------------c-----cCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcC
Q 036729 82 ISR--D--------------------------F-----LNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSG 128 (970)
Q Consensus 82 ~~~--~--------------------------l-----~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~ 128 (970)
... . + +-..+...|++++++++ .+|..+. ++|+.|+|++|.++
T Consensus 137 ~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt- 212 (754)
T PRK15370 137 ASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK- 212 (754)
T ss_pred CCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-
Confidence 100 0 0 01123455666665555 2444332 35666666666655
Q ss_pred CCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccC
Q 036729 129 KIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHG 208 (970)
Q Consensus 129 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 208 (970)
.+|..+. .+|++|++++|.+. .+|..+. .+|+.|++++|++. .+|..+. .+|++|++++|+++.
T Consensus 213 sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-------- 276 (754)
T PRK15370 213 SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-------- 276 (754)
T ss_pred cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc--------
Confidence 4454332 35666666665554 3443332 24555555555554 3443332 245555555555543
Q ss_pred CcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEE
Q 036729 209 CEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELD 288 (970)
Q Consensus 209 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 288 (970)
+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +|..+ .++|+.|+
T Consensus 277 -----------------LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~ 331 (754)
T PRK15370 277 -----------------LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLE 331 (754)
T ss_pred -----------------cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceecc
Confidence 333221 244444444444442 222221 234444455544442 22221 13455555
Q ss_pred CcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCC
Q 036729 289 LSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFK 368 (970)
Q Consensus 289 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 368 (970)
+++|.+++ +|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.++. +|..+. ..|+.|++++|++.
T Consensus 332 Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 332 AGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred ccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc
Confidence 55555443 222221 35555555555554 344332 2355555555555553 222221 24555666666555
Q ss_pred CCCCccc----ccccccccccCCccccc
Q 036729 369 GELPRSL----DKLEELTDLLLNNNSFT 392 (970)
Q Consensus 369 ~~~~~~l----~~l~~L~~L~L~~n~l~ 392 (970)
.+|..+ ..++.+..+++.+|+++
T Consensus 402 -~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 402 -RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 333322 22355556666666554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.4e-18 Score=201.73 Aligned_cols=226 Identities=25% Similarity=0.452 Sum_probs=147.5
Q ss_pred CCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccC
Q 036729 548 KLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSF 627 (970)
Q Consensus 548 ~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 627 (970)
.++.|++++|.++.....+ .++|+.|++++|+++. +|..+. .+|+.|++++|++. .+|..+. .+|+.|++++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence 3444444444444221111 1355566666665553 343332 35777777777766 4555543 4677888888
Q ss_pred CcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC
Q 036729 628 NSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP 707 (970)
Q Consensus 628 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 707 (970)
|+++. +|..+. .+|+.|++++|++++ +|..+. ++|+.|++++|+++. +|..+ .++|+.|++++|.+++ +|
T Consensus 272 N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP 341 (754)
T PRK15370 272 NKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LP 341 (754)
T ss_pred CccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CC
Confidence 87774 555443 468888888888774 344332 467888888888874 44333 3678888888888875 55
Q ss_pred cccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccc----
Q 036729 708 PEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSL---- 783 (970)
Q Consensus 708 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~---- 783 (970)
..+. ++|+.|++++|+++. +|..+. +.|+.|+|++|+++ .+|..+.. .|+. |++++|+++ .+|..+
T Consensus 342 ~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~--sL~~-LdLs~N~L~-~LP~sl~~~~ 411 (754)
T PRK15370 342 ASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALT-NLPENLPA--ALQI-MQASRNNLV-RLPESLPHFR 411 (754)
T ss_pred hhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCC-CCCHhHHH--HHHH-HhhccCCcc-cCchhHHHHh
Confidence 5543 688888898888874 555543 57889999999988 56766543 5776 899999988 455443
Q ss_pred cCCCCCCEEeCCCCcCcc
Q 036729 784 GSLLKLERLNISYNQLQG 801 (970)
Q Consensus 784 ~~l~~L~~L~ls~N~l~~ 801 (970)
+.++.+..|++.+|.++.
T Consensus 412 ~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 412 GEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred hcCCCccEEEeeCCCccH
Confidence 445788899999998873
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=5.5e-19 Score=193.88 Aligned_cols=201 Identities=25% Similarity=0.276 Sum_probs=100.8
Q ss_pred EECCCCCCcc-ccccCccCCCCCcEEECCCCCCCCC----CCccccCCCCCcEeecCCCcCcC------CCCcCCCCCCC
Q 036729 71 LNLSSSGLSG-SISRDFLNLTSLETLDLSSNSLTGL----IPSELGQLQNLRILLLYSNSFSG------KIPPEIGFLNK 139 (970)
Q Consensus 71 L~L~~~~l~~-~~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~------~~p~~l~~l~~ 139 (970)
|+|.++.+++ .....+..++.|++|+++++.+++. ++..+...+.|++|+++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 4555555552 2334445566677777777766432 44455566667777777666542 12334455666
Q ss_pred CcEEEccCccCCccCCccccCCcc---cchhhcccccccc----CCCccccCC-ceeeEEEcCCCcCCCCC----ccccc
Q 036729 140 LQVLRIGDNLLWGEIPPHIGNLTE---LRELAIAYCQLNG----SIPVEIGNL-KHLTSLDLQMNKLSGLI----PEAIH 207 (970)
Q Consensus 140 L~~L~L~~n~~~~~~p~~l~~l~~---L~~L~L~~~~~~~----~~p~~l~~l-~~L~~L~Ls~n~i~~~~----~~~l~ 207 (970)
|++|++++|.+.+..+..+..+.+ |++|++++|.+.+ .+...+..+ ++|++|++++|.+++.. +..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 666666666665444444444433 6666666655542 122234444 56666666666655322 22334
Q ss_pred CCcccccccccccccCCC----CcccccCCCCCcEEEccCCcCccc----cCccccCCCCCCEEEccCcccc
Q 036729 208 GCEELQKFAASNNMLEGT----IPSSIVLLKSLQILNLANNSLSGS----IPVELSHLFNLRYLNLLGNIFD 271 (970)
Q Consensus 208 ~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~ 271 (970)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+++. +...+..+++|++|++++|.+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 444555555555554431 122233334555555555544322 1122333444444444444443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.5e-18 Score=190.48 Aligned_cols=258 Identities=27% Similarity=0.281 Sum_probs=139.7
Q ss_pred EEECCCCCCC-CCCCccccCCCCCcEeecCCCcCcCC----CCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhh
Q 036729 94 TLDLSSNSLT-GLIPSELGQLQNLRILLLYSNSFSGK----IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELA 168 (970)
Q Consensus 94 ~L~Ls~n~~~-~~~p~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 168 (970)
.|+|..+.++ ...+..+..+.+|++|+++++.++.. ++..+...+.|++|+++++.+.+ .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~---------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL---------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence 5778888887 34566677788899999999887543 45556667778888888776542 01100
Q ss_pred ccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcc---cccccccccccCC----CCcccccCC-CCCcEEE
Q 036729 169 IAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE---LQKFAASNNMLEG----TIPSSIVLL-KSLQILN 240 (970)
Q Consensus 169 L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~ 240 (970)
..++..+.++++|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|+.|+
T Consensus 71 -------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 71 -------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred -------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 112223344445555555555444433333333332 5555555554442 112233344 5666666
Q ss_pred ccCCcCccc----cCccccCCCCCCEEEccCcccccc----CCccccCCCCccEEECcCCcCccc----cccccCCCCCc
Q 036729 241 LANNSLSGS----IPVELSHLFNLRYLNLLGNIFDGE----IPSELNKLAQLEELDLSKNNLSGS----ISLLNTQLKNL 308 (970)
Q Consensus 241 L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L 308 (970)
+++|.+++. ++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++. +...+..+++|
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence 666666532 222344555666666666666532 222344455667777766666533 22334556667
Q ss_pred cEEEccCCcccCCCchhhhcC----CCCCcEEEccCCcCCC----CCccccccCCCCCEEeCCCCcCCC
Q 036729 309 ETLVLSDNAFTGSIPIKFCLN----NSSLQQLILARNKLSG----EFPLELLRCSSLQQLDLSDNSFKG 369 (970)
Q Consensus 309 ~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~Ls~n~l~~ 369 (970)
++|++++|.+++.....+... .+.|++|++++|.++. .+...+..+++|+++++++|.+..
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 777777776654333222221 2566666666665542 122333445566666666666653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1.2e-18 Score=156.36 Aligned_cols=164 Identities=34% Similarity=0.553 Sum_probs=105.6
Q ss_pred cCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceE
Q 036729 592 MSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGEL 671 (970)
Q Consensus 592 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 671 (970)
+++..+.|.+++|+++ .+|..+..+.+|+.|++++|++. ..|.+++.++.|+.|+++-|++. ..|..|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3455566666666666 44556667777777777777766 45666777777777777777665 556677777777777
Q ss_pred EcccCcCcC-CCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccc
Q 036729 672 DLSSNNFNG-TVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFF 750 (970)
Q Consensus 672 ~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 750 (970)
||..|++.. ..|..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|++++|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 777776653 45666666666666777776665 55666666666666666666654 4455566666666666666666
Q ss_pred cccCchhhhhh
Q 036729 751 TGSIPADLGRL 761 (970)
Q Consensus 751 ~~~ip~~l~~l 761 (970)
+ .+|++++++
T Consensus 186 ~-vlppel~~l 195 (264)
T KOG0617|consen 186 T-VLPPELANL 195 (264)
T ss_pred e-ecChhhhhh
Confidence 5 455555543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=5.3e-17 Score=145.82 Aligned_cols=165 Identities=29% Similarity=0.477 Sum_probs=134.1
Q ss_pred cccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcce
Q 036729 614 FGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL 693 (970)
Q Consensus 614 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 693 (970)
+.++...+.|.+|+|+++ .+|+.+..+.+|+.|++.+|++. ..|..+++++.|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445667788889999988 56677888899999999999887 55777888899999999888887 7788888899999
Q ss_pred EEEccCCcCcc-cCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCC
Q 036729 694 KLSLRGNNLSG-KIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSK 772 (970)
Q Consensus 694 ~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~ 772 (970)
.||+.+|++.. ..|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- .+|.+++.++.|+. |.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre-lhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE-LHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH-Hhccc
Confidence 99998888874 45777888888888888888886 56677888888888888888877 67888888888887 88888
Q ss_pred CcccccCCccccC
Q 036729 773 NNFSGEIPPSLGS 785 (970)
Q Consensus 773 N~l~g~ip~~~~~ 785 (970)
|+++ .+|+.+++
T Consensus 183 nrl~-vlppel~~ 194 (264)
T KOG0617|consen 183 NRLT-VLPPELAN 194 (264)
T ss_pred ceee-ecChhhhh
Confidence 8887 56666554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=9.7e-15 Score=171.44 Aligned_cols=151 Identities=30% Similarity=0.517 Sum_probs=121.7
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCCCCCCCCCCCCC----CccceEecCC--C--CCEEEEECCCCCCccccccCccCCCC
Q 036729 20 LGGISTDSFWLLRIKQELVDPTGILENWSARAHMC----SWHGVTCSDD--Q--KHVVGLNLSSSGLSGSISRDFLNLTS 91 (970)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c----~w~gv~c~~~--~--~~v~~L~L~~~~l~~~~~~~l~~l~~ 91 (970)
....+.|..||+++|+++.++.. .+|.+ .+|| .|.||.|... . .+|+.|+|+++.+.|.+|..+..+++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 34567899999999999876532 47964 2332 7999999532 2 25899999999999999999999999
Q ss_pred CcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCC-cccchhhcc
Q 036729 92 LETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNL-TELRELAIA 170 (970)
Q Consensus 92 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l-~~L~~L~L~ 170 (970)
|+.|+|++|.+.|.+|..++.+++|++|+|++|.++|.+|..++.+++|++|+|++|.+.+.+|..++.+ .++..+++.
T Consensus 444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 9999999999999999999999999999999999999999999999999999999998888888777643 234444444
Q ss_pred ccc
Q 036729 171 YCQ 173 (970)
Q Consensus 171 ~~~ 173 (970)
+|.
T Consensus 524 ~N~ 526 (623)
T PLN03150 524 DNA 526 (623)
T ss_pred CCc
Confidence 443
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.53 E-value=1.5e-14 Score=169.96 Aligned_cols=114 Identities=46% Similarity=0.794 Sum_probs=66.4
Q ss_pred CcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecC
Q 036729 740 LYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLS 819 (970)
Q Consensus 740 L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls 819 (970)
++.|+|++|.++|.+|..++.++.|+. |+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++.+++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~-L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQS-INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCE-EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 344555555555555555555555555 5555555555566556666666666666666666666666666666666666
Q ss_pred CCcccccCCccccCC----CCcccCCCCCCCCCC-CCCCC
Q 036729 820 NNHLQGQLPLTFSGF----PLSSFLGNAKLCGPP-LLSCS 854 (970)
Q Consensus 820 ~N~l~g~~p~~~~~~----~~~~~~~n~~lc~~~-~~~c~ 854 (970)
+|+++|.+|..+... ....+.+|+.+|+.| ...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 666666666433221 123467788888865 35674
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=2.4e-12 Score=137.68 Aligned_cols=196 Identities=31% Similarity=0.478 Sum_probs=143.3
Q ss_pred cCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEE
Q 036729 616 KLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695 (970)
Q Consensus 616 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 695 (970)
.+..-...|++.|++. .+|..+..+..|+.+.+.+|.+. .+|..+.++..|+++||+.|+++ ..|..++.|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 4555567888999888 57777888888888888888887 67888888888899999998888 5566666654 7888
Q ss_pred EccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcc
Q 036729 696 SLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNF 775 (970)
Q Consensus 696 ~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l 775 (970)
-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..+..+.+|+.|.+..|++. .+|.++..|+ |.. ||+|+|++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~-lDfScNki 223 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIR-LDFSCNKI 223 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eee-eecccCce
Confidence 88888887 66777777778888888888876 45566777777777777777776 5666776444 444 77777777
Q ss_pred cccCCccccCCCCCCEEeCCCCcCccccCccc---CCCCcCcEEecCCCc
Q 036729 776 SGEIPPSLGSLLKLERLNISYNQLQGQVPASL---GKLTSLHVLNLSNNH 822 (970)
Q Consensus 776 ~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l---~~l~~L~~l~ls~N~ 822 (970)
+ .||-.|..|+.|++|-|.+|.|.. .|..+ +...-.++|+...+.
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 7 677777777777777777777763 23332 233445666666553
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=2e-12 Score=138.20 Aligned_cols=195 Identities=28% Similarity=0.418 Sum_probs=160.1
Q ss_pred CcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEE
Q 036729 593 SRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD 672 (970)
Q Consensus 593 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 672 (970)
+..-...|++.|++. ++|..++.+..|+.+.+..|.+. .+|..+.++..|+.++|+.|+++ ..|..+..|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344567889999887 78888998999999999999988 67888999999999999999988 5566677666 88999
Q ss_pred cccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccc
Q 036729 673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG 752 (970)
Q Consensus 673 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 752 (970)
+++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|++... |+.+..+ .|..||+|.|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccCcee-
Confidence 9999998 67778888899999999999987 6777889999999999999998744 5555544 4889999999998
Q ss_pred cCchhhhhhhhhHhhhhCCCCcccccCCccc---cCCCCCCEEeCCCCc
Q 036729 753 SIPADLGRLTELQVILDLSKNNFSGEIPPSL---GSLLKLERLNISYNQ 798 (970)
Q Consensus 753 ~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~---~~l~~L~~L~ls~N~ 798 (970)
.||-.|..++.|++ |-|.+|.+. ..|..+ |...--++|+...++
T Consensus 225 ~iPv~fr~m~~Lq~-l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQV-LQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhhee-eeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 89999999999998 999999998 444433 344455677777774
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.4e-10 Score=130.81 Aligned_cols=204 Identities=32% Similarity=0.488 Sum_probs=144.5
Q ss_pred EEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCc-CCCceeccCccccCCCCcccccCCCCcEEEccCCc
Q 036729 551 IINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSR-NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS 629 (970)
Q Consensus 551 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 629 (970)
.++.+.+.+..........+.++.|++.+|.++. ++....... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 4555555554444444445667777777777764 344444553 7888888888877 445667888888888888888
Q ss_pred CccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcc
Q 036729 630 FTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPE 709 (970)
Q Consensus 630 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 709 (970)
++. +|......+.|+.|++++|++.. +|........|+++++++|+.. ..+..+.++.++..+.+.+|++.. .+..
T Consensus 175 l~~-l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~ 250 (394)
T COG4886 175 LSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccch
Confidence 884 44444467888888888888874 4544455566888888888644 345567788888888888888763 2566
Q ss_pred cccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhh
Q 036729 710 IGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLT 762 (970)
Q Consensus 710 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 762 (970)
++.++++++|++++|+++...+ +..+.+++.|++++|.++..+|.......
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~~~ 301 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLL 301 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhccch
Confidence 7788889999999998875544 77888899999999988877776554433
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=1.5e-11 Score=124.56 Aligned_cols=232 Identities=23% Similarity=0.280 Sum_probs=117.9
Q ss_pred CCEEEEECCCCCCccc----cccCccCCCCCcEEECCCCCCCC----CCCcc-------ccCCCCCcEeecCCCcCcCCC
Q 036729 66 KHVVGLNLSSSGLSGS----ISRDFLNLTSLETLDLSSNSLTG----LIPSE-------LGQLQNLRILLLYSNSFSGKI 130 (970)
Q Consensus 66 ~~v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~----~~p~~-------l~~l~~L~~L~Ls~n~~~~~~ 130 (970)
..+++|+|++|.+.-. +.+.+.+.+.|+..++|.- ++| .+|+. +-.+++|++||||.|.|.-..
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4567777777766432 3345556666666666642 222 23332 334445555555555544322
Q ss_pred CcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCC-------------CccccCCceeeEEEcCCCc
Q 036729 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSI-------------PVEIGNLKHLTSLDLQMNK 197 (970)
Q Consensus 131 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~-------------p~~l~~l~~L~~L~Ls~n~ 197 (970)
+..+. ..+..++.|++|.|.+|.+...- ....+.-+.|+++....|+
T Consensus 109 ~~~l~--------------------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 109 IRGLE--------------------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hHHHH--------------------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 22111 12334556666666666543110 1123344677888887777
Q ss_pred CCCCCc----ccccCCcccccccccccccCCC----CcccccCCCCCcEEEccCCcCcccc----CccccCCCCCCEEEc
Q 036729 198 LSGLIP----EAIHGCEELQKFAASNNMLEGT----IPSSIVLLKSLQILNLANNSLSGSI----PVELSHLFNLRYLNL 265 (970)
Q Consensus 198 i~~~~~----~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L 265 (970)
+..... ..|...+.|+.+.+..|.+... +..++..++.|++|||..|.++... ...+..+++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 665432 3355566777777776665421 1234456666666666666665322 223444556666666
Q ss_pred cCccccccCCccc-----cCCCCccEEECcCCcCccc----cccccCCCCCccEEEccCCcc
Q 036729 266 LGNIFDGEIPSEL-----NKLAQLEELDLSKNNLSGS----ISLLNTQLKNLETLVLSDNAF 318 (970)
Q Consensus 266 ~~n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 318 (970)
++|.+......+| ...+.|++|++.+|.++.. +.......+.|+.|+|++|.+
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6666554433322 1245566666665555422 111223345555555555555
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=1.8e-10 Score=129.99 Aligned_cols=196 Identities=39% Similarity=0.547 Sum_probs=95.5
Q ss_pred eeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcC-cccEEEccCCcccCCccccccccCccceEEcccCc
Q 036729 599 LRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCA-KLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN 677 (970)
Q Consensus 599 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 677 (970)
++++.|.+... +..+..++.++.|++.+|.++. ++....... +|+.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 98 l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 44444444221 1223333455555555555553 233333332 4555555555554 222334445555555555555
Q ss_pred CcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchh
Q 036729 678 FNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPAD 757 (970)
Q Consensus 678 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~ 757 (970)
++. +|...+..+. |+.|++++|++. .+|........|+++++++|++. .++..
T Consensus 175 l~~-l~~~~~~~~~------------------------L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~ 227 (394)
T COG4886 175 LSD-LPKLLSNLSN------------------------LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS 227 (394)
T ss_pred hhh-hhhhhhhhhh------------------------hhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh
Confidence 542 2222224444 444455554443 22222233333555555555322 34444
Q ss_pred hhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 758 LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 758 l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+..+..+.. +.+++|.+.. ++..++.++.++.|++++|+++..-+ +..+..++.|++++|.++...|
T Consensus 228 ~~~~~~l~~-l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 228 LSNLKNLSG-LELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhhcccccc-cccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 555555554 5555555542 24556666666667777666664333 6666667777777776666655
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=2.3e-11 Score=123.20 Aligned_cols=163 Identities=21% Similarity=0.204 Sum_probs=87.1
Q ss_pred ccCCceeeEEEcCCCcCCCCCccc----ccCCcccccccccccccCCCCcc-------------cccCCCCCcEEEccCC
Q 036729 182 IGNLKHLTSLDLQMNKLSGLIPEA----IHGCEELQKFAASNNMLEGTIPS-------------SIVLLKSLQILNLANN 244 (970)
Q Consensus 182 l~~l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n 244 (970)
+...++|++||||.|-+....+.. +..+..|++|+|.+|.+.-..-. ....-+.|+++....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 334445566666666554433332 34566777777777765422111 1233456777777777
Q ss_pred cCcccc----CccccCCCCCCEEEccCccccccCC----ccccCCCCccEEECcCCcCccc----cccccCCCCCccEEE
Q 036729 245 SLSGSI----PVELSHLFNLRYLNLLGNIFDGEIP----SELNKLAQLEELDLSKNNLSGS----ISLLNTQLKNLETLV 312 (970)
Q Consensus 245 ~l~~~~----~~~l~~l~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ 312 (970)
++.... ...|...+.|+.+.++.|.+....- ..|..+++|++|||.+|-++.. +...+..+++|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 664321 1234455667777777766543222 3455667777777777766533 223445566677777
Q ss_pred ccCCcccCCCchhhh----cCCCCCcEEEccCCcCC
Q 036729 313 LSDNAFTGSIPIKFC----LNNSSLQQLILARNKLS 344 (970)
Q Consensus 313 L~~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~ 344 (970)
+++|.+...-...+. ...|+|+.+.+.+|.++
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 777666543333222 23445555555555444
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=3.6e-10 Score=135.54 Aligned_cols=84 Identities=33% Similarity=0.400 Sum_probs=39.2
Q ss_pred ccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceee
Q 036729 110 LGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLT 189 (970)
Q Consensus 110 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 189 (970)
|..++.|++|||++|.--+.+|.+++.|-+||+|+++++.+. .+|..+++++.|.+|++..+.....+|.....|++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 444555555555544433445555555555555555544442 4444444444455554444443333333333444444
Q ss_pred EEEcC
Q 036729 190 SLDLQ 194 (970)
Q Consensus 190 ~L~Ls 194 (970)
+|.+.
T Consensus 646 ~L~l~ 650 (889)
T KOG4658|consen 646 VLRLP 650 (889)
T ss_pred EEEee
Confidence 44443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.5e-10 Score=120.54 Aligned_cols=111 Identities=32% Similarity=0.290 Sum_probs=58.7
Q ss_pred cCCCCCcEEEccCCcCccccC-ccccCCCCCCEEEccCccccccCC--ccccCCCCccEEECcCCcCcccccccc-CCCC
Q 036729 231 VLLKSLQILNLANNSLSGSIP-VELSHLFNLRYLNLLGNIFDGEIP--SELNKLAQLEELDLSKNNLSGSISLLN-TQLK 306 (970)
Q Consensus 231 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~ 306 (970)
.++.+|++..|.++....... .....|++++.|||+.|-+....+ .-...+++|+.|+++.|.+........ ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 466778888888877652211 245567777777777776654221 233456677777777666543222111 2344
Q ss_pred CccEEEccCCcccCCCchhhhcCCCCCcEEEccCC
Q 036729 307 NLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARN 341 (970)
Q Consensus 307 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n 341 (970)
.|+.|.++.|.++..--.+....+|+|+.|++..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 55555555555543222233333444444444444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.3e-10 Score=112.77 Aligned_cols=128 Identities=27% Similarity=0.265 Sum_probs=58.2
Q ss_pred ccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCC
Q 036729 644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQR 723 (970)
Q Consensus 644 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 723 (970)
|++++|++|.++ .+..+..-+|.++.|++++|.+...- .++.+++|+.|||++|.++.. ..+-..+-+++.|.|++
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhh
Confidence 334444444333 22233333344444444444443211 133444444444444444321 11222333444455555
Q ss_pred CccccccchhhhcccCCcEEECccccccccC-chhhhhhhhhHhhhhCCCCccccc
Q 036729 724 NSLSGNIPSTIQQCKKLYELRLSENFFTGSI-PADLGRLTELQVILDLSKNNFSGE 778 (970)
Q Consensus 724 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~~L~ls~N~l~g~ 778 (970)
|.+... ..+..+-+|..||+++|++...- -..+|+++-|+. +.|.+|.+.+.
T Consensus 362 N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~-l~L~~NPl~~~ 414 (490)
T KOG1259|consen 362 NKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET-LRLTGNPLAGS 414 (490)
T ss_pred hhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHH-HhhcCCCcccc
Confidence 444211 12334445555555555554211 245677777777 78888888754
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=6e-10 Score=133.64 Aligned_cols=204 Identities=25% Similarity=0.334 Sum_probs=132.9
Q ss_pred cCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCc--CcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCccc
Q 036729 87 LNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS--FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTEL 164 (970)
Q Consensus 87 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~--~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 164 (970)
.+....+...+-+|.+.. ++.. ..++.|++|-+..|. +....+..|..++.|++|||++|.-.+.+|..++.+-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 344667777777776642 2222 234579999888886 442233347789999999999998888999999999999
Q ss_pred chhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCccccccccccccc--CCCCcccccCCCCCcEEEcc
Q 036729 165 RELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNML--EGTIPSSIVLLKSLQILNLA 242 (970)
Q Consensus 165 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L~L~ 242 (970)
|+|+++++.+. .+|..+++++.|.+|++..+.-...+|.....+++|++|.+..... +...-..+.++.+|+.+...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999999987 8899999999999999999886666677777799999998866542 22222334455555555553
Q ss_pred CCcCccccCccccCCCCCC----EEEccCccccccCCccccCCCCccEEECcCCcCcc
Q 036729 243 NNSLSGSIPVELSHLFNLR----YLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG 296 (970)
Q Consensus 243 ~n~l~~~~~~~l~~l~~L~----~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 296 (970)
.... .+-..+..++.|+ .+.+.++... ..+..+..+.+|+.|.+.++....
T Consensus 677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 3322 1111222333333 2222222211 233445666677777776666543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.9e-10 Score=117.50 Aligned_cols=110 Identities=25% Similarity=0.258 Sum_probs=66.0
Q ss_pred CCcccccccccccccCCCCc-ccccCCCCCcEEEccCCcCccccC--ccccCCCCCCEEEccCccccccCCcc-ccCCCC
Q 036729 208 GCEELQKFAASNNMLEGTIP-SSIVLLKSLQILNLANNSLSGSIP--VELSHLFNLRYLNLLGNIFDGEIPSE-LNKLAQ 283 (970)
Q Consensus 208 ~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~ 283 (970)
++.+|++..+.++....... +....+++++.|||+.|-+....+ .....+++|+.|+++.|.+.....+. -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 55667777777666542211 244567777777777776654322 22456777777777777765432221 124667
Q ss_pred ccEEECcCCcCccc-cccccCCCCCccEEEccCCc
Q 036729 284 LEELDLSKNNLSGS-ISLLNTQLKNLETLVLSDNA 317 (970)
Q Consensus 284 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~ 317 (970)
|+.|.|+.|.++.. +......+|+|+.|++.+|.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 77777777776632 22233456777777777774
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=9e-10 Score=108.70 Aligned_cols=128 Identities=31% Similarity=0.345 Sum_probs=71.0
Q ss_pred eeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEcc
Q 036729 187 HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLL 266 (970)
Q Consensus 187 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 266 (970)
.|+++|||+|.|+.+ .++..-.|.++.|+++.|.+... +.+..+++|+.|||++|.++ .+..+-.++-+++.|.|+
T Consensus 285 ~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 344444444444321 22333334444444444444322 22555666666666666665 333344456667777777
Q ss_pred CccccccCCccccCCCCccEEECcCCcCccccc-cccCCCCCccEEEccCCcccC
Q 036729 267 GNIFDGEIPSELNKLAQLEELDLSKNNLSGSIS-LLNTQLKNLETLVLSDNAFTG 320 (970)
Q Consensus 267 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 320 (970)
+|.+... +.++.+-+|..||+++|++..... ..++++|.|+.+.+.+|.+.+
T Consensus 361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7766532 345666677777777777654322 345677777777777777764
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=3.3e-09 Score=101.61 Aligned_cols=108 Identities=31% Similarity=0.343 Sum_probs=30.3
Q ss_pred cCcCCCceeccCccccCCCCcccc-cCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccce
Q 036729 592 MSRNLSRLRLAHNHLTGNIPSEFG-KLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGE 670 (970)
Q Consensus 592 ~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 670 (970)
++..++.|+|.+|.++.. +.++ .+.+|+.||+++|.++.. +.+..++.|++|++++|+++...+.....+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 334556666666665532 2333 356667777777776643 23556667777777777776432221234667777
Q ss_pred EEcccCcCcCCCC-CCCCCCCcceEEEccCCcCc
Q 036729 671 LDLSSNNFNGTVP-AEIGNCSKLLKLSLRGNNLS 703 (970)
Q Consensus 671 L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~ 703 (970)
|++++|++...-. ..+..+++|+.|++.+|++.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 7777777654221 23445666666666666655
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=4.4e-09 Score=100.75 Aligned_cols=83 Identities=28% Similarity=0.364 Sum_probs=14.8
Q ss_pred CCcccccccccccccCCCCccccc-CCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccc-cCCCCcc
Q 036729 208 GCEELQKFAASNNMLEGTIPSSIV-LLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSEL-NKLAQLE 285 (970)
Q Consensus 208 ~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~ 285 (970)
+..++++|++.+|.++.. +.++ .+.+|+.|++++|.++.. ..+..+++|+.|++++|.++...+ .+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCCcCC
Confidence 334455555555555421 2233 344555555555555422 124444455555555554443211 22 2344444
Q ss_pred EEECcCCcCc
Q 036729 286 ELDLSKNNLS 295 (970)
Q Consensus 286 ~L~L~~n~l~ 295 (970)
+|++++|++.
T Consensus 92 ~L~L~~N~I~ 101 (175)
T PF14580_consen 92 ELYLSNNKIS 101 (175)
T ss_dssp EEE-TTS---
T ss_pred EEECcCCcCC
Confidence 4444444443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=6.6e-10 Score=125.33 Aligned_cols=196 Identities=31% Similarity=0.302 Sum_probs=91.6
Q ss_pred ccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceE
Q 036729 615 GKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLK 694 (970)
Q Consensus 615 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 694 (970)
..+++|..|++.+|.+..+.. .+..+.+|++|++++|.|+...+ +..++.|+.|++++|.+... ..+..+..|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhc
Confidence 334444444444444442211 13334444444444444443322 33344455555555555422 12333455555
Q ss_pred EEccCCcCcccCC-cccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhh--hhHhhhhCC
Q 036729 695 LSLRGNNLSGKIP-PEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLT--ELQVILDLS 771 (970)
Q Consensus 695 L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~~L~ls 771 (970)
+++++|.+...-+ . ...+.+++.+++.+|.+.... .+..+..+..+++..|.++-.-+ +..+. .|+. ++++
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~-l~l~ 240 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRE-LYLS 240 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceeccC--cccchhHHHHH-Hhcc
Confidence 5555555543322 1 344555555555555553221 22223333344555555542211 11111 2555 6677
Q ss_pred CCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccc
Q 036729 772 KNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824 (970)
Q Consensus 772 ~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 824 (970)
+|++. .++..+..+..+..||+++|+++..- .+.....+..+....|.+.
T Consensus 241 ~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 241 GNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 77766 33344556667777777777665432 2334455556666666655
No 40
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.72 E-value=1.5e-08 Score=72.35 Aligned_cols=39 Identities=41% Similarity=0.913 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhCCC-CCCCCCCCCCC--CCCCCccceEec
Q 036729 24 STDSFWLLRIKQELVD-PTGILENWSAR--AHMCSWHGVTCS 62 (970)
Q Consensus 24 ~~~~~~l~~~~~~~~~-~~~~~~~w~~~--~~~c~w~gv~c~ 62 (970)
++|++||++||+++.. |.+.+.+|... ++||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5799999999999985 77889999765 799999999995
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=3.3e-09 Score=119.72 Aligned_cols=197 Identities=30% Similarity=0.343 Sum_probs=114.4
Q ss_pred CCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEE
Q 036729 617 LTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696 (970)
Q Consensus 617 l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 696 (970)
+..++.+++..|.+.. +-..+..+++|+.|++.+|++..... .+..+++|++|++++|.++...+ +..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhhe
Confidence 3444444555555543 22235556677777777777764422 25566777777777777765543 55566677777
Q ss_pred ccCCcCcccCCcccccccccceeccCCCccccccc-hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcc
Q 036729 697 LRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP-STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNF 775 (970)
Q Consensus 697 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l 775 (970)
+++|.++.. ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+.. ...+..+..+.. +++..|.+
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~-~~l~~n~i 220 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVL-LSLLDNKI 220 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHH-hhcccccc
Confidence 777777643 345556677777777777665444 2 4556667777777776652 223333444444 56667766
Q ss_pred cccCCccccCCCC--CCEEeCCCCcCccccCcccCCCCcCcEEecCCCccccc
Q 036729 776 SGEIPPSLGSLLK--LERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQ 826 (970)
Q Consensus 776 ~g~ip~~~~~l~~--L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 826 (970)
+-.-+ +..+.. |+.+++++|.+.- +|..+..+..+..++++.|.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc
Confidence 63221 122222 6777777777653 224455566667777777766544
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=3.5e-08 Score=77.44 Aligned_cols=55 Identities=35% Similarity=0.486 Sum_probs=19.9
Q ss_pred ceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCC
Q 036729 669 GELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQR 723 (970)
Q Consensus 669 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 723 (970)
++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 3333333333333333333333333333333333333333333333333333333
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.58 E-value=4.3e-08 Score=76.92 Aligned_cols=59 Identities=39% Similarity=0.475 Sum_probs=32.9
Q ss_pred cccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCc
Q 036729 643 KLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN 701 (970)
Q Consensus 643 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 701 (970)
+|++|++++|+++...+.+|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554444455555555555555555555555555556666666665554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=5.6e-09 Score=103.35 Aligned_cols=179 Identities=23% Similarity=0.216 Sum_probs=86.4
Q ss_pred CCcEEECCCCCCCCC-CCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCcc--CCccccCCcccchh
Q 036729 91 SLETLDLSSNSLTGL-IPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGE--IPPHIGNLTELREL 167 (970)
Q Consensus 91 ~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~--~p~~l~~l~~L~~L 167 (970)
.|++||||...++-. +-..+..|.+|+.|.|.++.+.+.+-..+++-.+|+.|+++.+.-..+ ..-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666555421 222355666666666666666666666666666666666666542111 11224456666666
Q ss_pred hccccccccCCCc-cccC-CceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCc
Q 036729 168 AIAYCQLNGSIPV-EIGN-LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245 (970)
Q Consensus 168 ~L~~~~~~~~~p~-~l~~-l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 245 (970)
+++.|.+....-. .+.. -++|+.|+|+++.-.- ....+..-...+++|.+|||+.|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl---------------------~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL---------------------QKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh---------------------hhhHHHHHHHhCCceeeecccccc
Confidence 6666654422211 1111 1234444444432100 000111112345555566665542
Q ss_pred -CccccCccccCCCCCCEEEccCccccccCCc---cccCCCCccEEECcCC
Q 036729 246 -LSGSIPVELSHLFNLRYLNLLGNIFDGEIPS---ELNKLAQLEELDLSKN 292 (970)
Q Consensus 246 -l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~L~~n 292 (970)
++...-..|.+++.|++|.++.|.. .+|. .+...+.|.+||+.++
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 2222223345556666666666542 2332 2455566666666554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=9.9e-09 Score=101.62 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=15.5
Q ss_pred CCcccchhhccccccccCCCccccCCceeeEEEcCC
Q 036729 160 NLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQM 195 (970)
Q Consensus 160 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~ 195 (970)
.|.+|+.|.+.++++...+...+++-.+|+.|+++.
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 344444444444444444434444444444444443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=1.7e-08 Score=111.48 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=9.6
Q ss_pred cccCCCCCcEEEccccccc
Q 036729 542 SLFQLKKLRIINFSHNKFS 560 (970)
Q Consensus 542 ~~~~l~~L~~L~ls~n~l~ 560 (970)
.+..+.+|+.|.+.++.+.
T Consensus 104 ~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred eeccccceeeEEecCcchh
Confidence 3444555555555555543
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=1.2e-07 Score=83.07 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=60.6
Q ss_pred ccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeC
Q 036729 715 ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNI 794 (970)
Q Consensus 715 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~l 794 (970)
.|+..+|++|.+....+..-...+.++.+++++|.++ .+|.++..++.|+. +|++.|.+. ..|.-+..|.++-.||.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~-lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS-LNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh-cccccCccc-cchHHHHHHHhHHHhcC
Confidence 3444455555555433333333445556666666665 55655666666665 666666665 33444445666666666
Q ss_pred CCCcCccccCcccCCCCcCcEEecCCCcccccCCccccC
Q 036729 795 SYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSG 833 (970)
Q Consensus 795 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~~~~~ 833 (970)
-+|.+- +||..+---+.....++.++++.+.+|...+.
T Consensus 131 ~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 131 PENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred CCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence 666554 33333221122233445677777777744433
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=2.5e-07 Score=102.48 Aligned_cols=125 Identities=31% Similarity=0.313 Sum_probs=61.3
Q ss_pred ccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCC
Q 036729 644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQR 723 (970)
Q Consensus 644 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 723 (970)
|.+.+.++|.+. ....++.-++.|+.|+|++|++.... .+..|++|+.|||++|.+....--....+. |+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 445555555554 33444555555666666666655332 345555666666666655522111222222 55555555
Q ss_pred CccccccchhhhcccCCcEEECccccccccCc-hhhhhhhhhHhhhhCCCCcc
Q 036729 724 NSLSGNIPSTIQQCKKLYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNF 775 (970)
Q Consensus 724 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~~L~ls~N~l 775 (970)
|.++.. ..+.++.+|+.||++.|-+.+--- ..++.+..|.. |.|.+|.+
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~-L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV-LWLEGNPL 291 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH-HhhcCCcc
Confidence 555432 134455555555555555543211 22344455555 55666554
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=8.3e-07 Score=88.27 Aligned_cols=187 Identities=23% Similarity=0.252 Sum_probs=82.6
Q ss_pred CCCCCEEEccCccccc--cCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCc
Q 036729 257 LFNLRYLNLLGNIFDG--EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQ 334 (970)
Q Consensus 257 l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 334 (970)
++.++.+||.+|.++. .+-..+.++|.|+.|+|+.|.+...+...-....+|+.|-|.+..+.-.....+....|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4555555555555543 12223455666666666666665444332234455666666555544333333333344444
Q ss_pred EEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCC--CCcCCCCcCCCCeeeccc
Q 036729 335 QLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGS--FPPEIGNLSKLENLFLFD 412 (970)
Q Consensus 335 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~ 412 (970)
+|.++.|.+ +.+++..+.++.. -+.++++....|..... .-..-.-++++..+.+..
T Consensus 150 elHmS~N~~--------------rq~n~Dd~c~e~~-------s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 150 ELHMSDNSL--------------RQLNLDDNCIEDW-------STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred hhhhccchh--------------hhhcccccccccc-------chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 444443321 1222222222211 12333333333322100 000011235566666666
Q ss_pred ccccccCC-ccccCCCCCCEEEcccccCCCcC-CcccccCCCCCEEeccccccC
Q 036729 413 NMITGKIP-VEIGKLQTLSAIYLYDNQMSGSI-PRELTNCSGLTEIDFFGNHFS 464 (970)
Q Consensus 413 n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~ 464 (970)
|.+...-. .....+|.+..|.++.+++.... -+.+..+++|..|.++++.+.
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 65543221 22344555556666666554321 123445555666666655554
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=1.8e-07 Score=91.70 Aligned_cols=197 Identities=21% Similarity=0.235 Sum_probs=99.8
Q ss_pred CCEEEEECCCCCCccc----cccCccCCCCCcEEECCCCCCC---CCCC-------ccccCCCCCcEeecCCCcCcCCCC
Q 036729 66 KHVVGLNLSSSGLSGS----ISRDFLNLTSLETLDLSSNSLT---GLIP-------SELGQLQNLRILLLYSNSFSGKIP 131 (970)
Q Consensus 66 ~~v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~~~---~~~p-------~~l~~l~~L~~L~Ls~n~~~~~~p 131 (970)
..++.++|++|.+... +...+.+-++|+..+++.-... ..++ .++-+|++|+..+||.|.|....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 3577778887777544 3344556677777777653221 1122 235567777777777777665555
Q ss_pred cC----CCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcc---
Q 036729 132 PE----IGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPE--- 204 (970)
Q Consensus 132 ~~----l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~--- 204 (970)
+. ++.-+.|.+|.+++|.+.-.--..++ +.|.+| .+|+ ...+-+.|++.+...|++......
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~l--a~nK-------Kaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHL--AYNK-------KAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHH--HHHh-------hhccCCCceEEEeccchhccCcHHHHH
Confidence 43 34455666666666643111001111 012221 1121 123446677777777776543221
Q ss_pred -cccCCcccccccccccccCCCC-----cccccCCCCCcEEEccCCcCccccCc----cccCCCCCCEEEccCcccccc
Q 036729 205 -AIHGCEELQKFAASNNMLEGTI-----PSSIVLLKSLQILNLANNSLSGSIPV----ELSHLFNLRYLNLLGNIFDGE 273 (970)
Q Consensus 205 -~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~~~~~ 273 (970)
.+..-.+|+++.+..|.+.-.. ...+..+.+|+.|||..|.++-.... .+...+.|+.|.+..|-++..
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 2233356666666666554221 11223456666666666666533222 222334456666666655543
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=6.2e-07 Score=89.16 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=28.8
Q ss_pred cCCCCCEEeCCCCcCCCC-CCcccccccccccccCCcccccCCCCc------CCCCcCCCCeeec
Q 036729 353 RCSSLQQLDLSDNSFKGE-LPRSLDKLEELTDLLLNNNSFTGSFPP------EIGNLSKLENLFL 410 (970)
Q Consensus 353 ~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L 410 (970)
.++.+..|+|+.+++..- -.+.+..+++|..|.++++++...+-. .++.+++++.|+=
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 344444555555554321 123445566666666666665433221 1455666666543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=8.3e-07 Score=78.01 Aligned_cols=89 Identities=30% Similarity=0.352 Sum_probs=43.6
Q ss_pred CccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEEC
Q 036729 666 QEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRL 745 (970)
Q Consensus 666 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 745 (970)
..|+..+|++|.|....+..-..++.++.|++++|.++ .+|+.+..+++|+.|+++.|.+.. .|..+..+.++-.||.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcC
Confidence 33444455555554322222223445555555555555 344445555556666666555542 2334444555555555
Q ss_pred ccccccccCchh
Q 036729 746 SENFFTGSIPAD 757 (970)
Q Consensus 746 s~N~l~~~ip~~ 757 (970)
.+|... +||..
T Consensus 131 ~~na~~-eid~d 141 (177)
T KOG4579|consen 131 PENARA-EIDVD 141 (177)
T ss_pred CCCccc-cCcHH
Confidence 555554 44433
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.85 E-value=3.2e-06 Score=83.10 Aligned_cols=199 Identities=21% Similarity=0.180 Sum_probs=93.8
Q ss_pred cccCCCCCcEeecCCCcCcCC----CCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccC
Q 036729 109 ELGQLQNLRILLLYSNSFSGK----IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGN 184 (970)
Q Consensus 109 ~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~ 184 (970)
.+..+..+..++||+|.|... +...+.+-++|++.++++-. +|..-..+. .+|+ .+...+-+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~--~~L~-----------~Ll~aLlk 90 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELY--SNLV-----------MLLKALLK 90 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHH--HHHH-----------HHHHHHhc
Confidence 344567778888888877533 22334455666666666532 121110000 0011 01123445
Q ss_pred CceeeEEEcCCCcCCCCCccc----ccCCcccccccccccccCCCCccc-------------ccCCCCCcEEEccCCcCc
Q 036729 185 LKHLTSLDLQMNKLSGLIPEA----IHGCEELQKFAASNNMLEGTIPSS-------------IVLLKSLQILNLANNSLS 247 (970)
Q Consensus 185 l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~l~ 247 (970)
|++|+..+||.|.+....|+. ++.-+.|++|.+++|.+.-..-.. ...-|.|+......|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 556666666666555444432 344455666666655543111111 123355666666666554
Q ss_pred cccC----ccccCCCCCCEEEccCccccccCCc-----cccCCCCccEEECcCCcCcccc----ccccCCCCCccEEEcc
Q 036729 248 GSIP----VELSHLFNLRYLNLLGNIFDGEIPS-----ELNKLAQLEELDLSKNNLSGSI----SLLNTQLKNLETLVLS 314 (970)
Q Consensus 248 ~~~~----~~l~~l~~L~~L~L~~n~~~~~~~~-----~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~ 314 (970)
.-.. ..+..-.+|+.+.+..|.+...... .+..+.+|++|||.+|.++... ...+..++.|+.|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 2111 0122224566666666654422111 1234566666666666554322 2233445556666666
Q ss_pred CCcccCC
Q 036729 315 DNAFTGS 321 (970)
Q Consensus 315 ~n~l~~~ 321 (970)
.|-++..
T Consensus 251 DClls~~ 257 (388)
T COG5238 251 DCLLSNE 257 (388)
T ss_pred chhhccc
Confidence 6655543
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00022 Score=77.22 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=34.5
Q ss_pred CccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCc
Q 036729 85 DFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN 148 (970)
Q Consensus 85 ~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n 148 (970)
.+..++++++|++++|.+. .+|. + -.+|++|+++++.--..+|..+ ..+|++|++++|
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3556688888888888666 3441 1 2357777777654333455433 245666666665
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=8.4e-05 Score=53.10 Aligned_cols=37 Identities=43% Similarity=0.673 Sum_probs=24.9
Q ss_pred CCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccc
Q 036729 787 LKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824 (970)
Q Consensus 787 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 824 (970)
++|++|++++|+|+ .+|..+.+++.|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777777 35556777777777777777766
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=2.8e-05 Score=91.54 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=59.7
Q ss_pred CcccccccccccccCCC-CcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccc-cCCccccCCCCccE
Q 036729 209 CEELQKFAASNNMLEGT-IPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDG-EIPSELNKLAQLEE 286 (970)
Q Consensus 209 l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~ 286 (970)
+|.|+.|.+.+-.+... ......++++|..||+++.+++.. ..++++++|+.|.+.+-.+.. ..-..+.+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 44444444444333211 112223556666666666665533 345566666666665544442 11123456667777
Q ss_pred EECcCCcCcccc--c----cccCCCCCccEEEccCCcccCCCchhhhcCCCCCc
Q 036729 287 LDLSKNNLSGSI--S----LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQ 334 (970)
Q Consensus 287 L~L~~n~l~~~~--~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 334 (970)
||+|........ . +....+|+|+.||.|+..+.+.+-..+....++|+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 777665432211 0 11123566666666666555444444443333333
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.43 E-value=0.00012 Score=52.26 Aligned_cols=36 Identities=50% Similarity=0.665 Sum_probs=18.4
Q ss_pred CCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCc
Q 036729 91 SLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFS 127 (970)
Q Consensus 91 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~ 127 (970)
+|++|++++|.++ .+|+.+++|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=5.1e-05 Score=89.40 Aligned_cols=106 Identities=26% Similarity=0.348 Sum_probs=58.4
Q ss_pred CCcEEEccCcc-CCccCCccccC-Ccccchhhcccccccc-CCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccc
Q 036729 139 KLQVLRIGDNL-LWGEIPPHIGN-LTELRELAIAYCQLNG-SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKF 215 (970)
Q Consensus 139 ~L~~L~L~~n~-~~~~~p~~l~~-l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 215 (970)
+|++||+++.. +....|..++. +++|+.|.+++-.+.. ..-....++++|..||+|+++++.. ..++.+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 44455554432 22233333332 4555555555544322 1122345667777777777777755 566777777777
Q ss_pred cccccccCC-CCcccccCCCCCcEEEccCCcC
Q 036729 216 AASNNMLEG-TIPSSIVLLKSLQILNLANNSL 246 (970)
Q Consensus 216 ~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l 246 (970)
.+.+=.+.. ..-..+.++++|+.||+|....
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 776655442 2223456677777777776544
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.34 E-value=0.00038 Score=75.35 Aligned_cols=75 Identities=19% Similarity=0.334 Sum_probs=45.4
Q ss_pred CcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCC-cCcccCCccccccccc
Q 036729 638 LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN-NLSGKIPPEIGNLTAL 716 (970)
Q Consensus 638 l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L 716 (970)
+..|.+++.|++++|.++.. |. -.++|++|.++++.-...+|..+ .++|++|++++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence 44567888888888877643 42 22468888887754434555544 357778888777 333 3343 35
Q ss_pred ceeccCCCc
Q 036729 717 NVLNLQRNS 725 (970)
Q Consensus 717 ~~L~L~~N~ 725 (970)
+.|+++.+.
T Consensus 115 e~L~L~~n~ 123 (426)
T PRK15386 115 RSLEIKGSA 123 (426)
T ss_pred ceEEeCCCC
Confidence 555555544
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.33 E-value=7.9e-06 Score=85.59 Aligned_cols=58 Identities=16% Similarity=0.089 Sum_probs=29.8
Q ss_pred CCcEeecCCCcCcCCCC--cCCCCCCCCcEEEccCcc-CCccCCccc-cCCcccchhhcccc
Q 036729 115 NLRILLLYSNSFSGKIP--PEIGFLNKLQVLRIGDNL-LWGEIPPHI-GNLTELRELAIAYC 172 (970)
Q Consensus 115 ~L~~L~Ls~n~~~~~~p--~~l~~l~~L~~L~L~~n~-~~~~~p~~l-~~l~~L~~L~L~~~ 172 (970)
.||.|.++++.-.+.-+ ....+++++++|++.++. +++..-..+ ..+++|++|++..|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c 200 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC 200 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc
Confidence 56777777765333211 122456677777666664 222222222 23556666666653
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.26 E-value=0.00073 Score=62.51 Aligned_cols=104 Identities=16% Similarity=0.278 Sum_probs=33.7
Q ss_pred cccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcce
Q 036729 614 FGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL 693 (970)
Q Consensus 614 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 693 (970)
|.++++|+.+.+.. .+.......|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444444444432 233333334444444444444432 3322233344444444444433 22222233344445555
Q ss_pred EEEccCCcCcccCCcccccccccceeccC
Q 036729 694 KLSLRGNNLSGKIPPEIGNLTALNVLNLQ 722 (970)
Q Consensus 694 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 722 (970)
.+++..+ +.......|.+. .|+.+.+.
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5554433 332223334443 44444443
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.22 E-value=9.6e-06 Score=84.97 Aligned_cols=295 Identities=21% Similarity=0.188 Sum_probs=158.1
Q ss_pred CCCcEEECCCCCCCCC--CCccccCCCCCcEeecCCCc-CcCCCCcCC-CCCCCCcEEEccCcc-CCccCCc-cccCCcc
Q 036729 90 TSLETLDLSSNSLTGL--IPSELGQLQNLRILLLYSNS-FSGKIPPEI-GFLNKLQVLRIGDNL-LWGEIPP-HIGNLTE 163 (970)
Q Consensus 90 ~~L~~L~Ls~n~~~~~--~p~~l~~l~~L~~L~Ls~n~-~~~~~p~~l-~~l~~L~~L~L~~n~-~~~~~p~-~l~~l~~ 163 (970)
..|+.|.|+++.=.+. +-..-.+++++++|++.++. ++...-.++ ..+++|++|++..|. ++...-. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3567777776643332 22344567777777777665 221111122 346777777777753 3322222 2234777
Q ss_pred cchhhccccc-cccC-CCccccCCceeeEEEcCCCcCCCCCcccc----cCCcccccccccccc-cCCCC-cccccCCCC
Q 036729 164 LRELAIAYCQ-LNGS-IPVEIGNLKHLTSLDLQMNKLSGLIPEAI----HGCEELQKFAASNNM-LEGTI-PSSIVLLKS 235 (970)
Q Consensus 164 L~~L~L~~~~-~~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l----~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~ 235 (970)
|++++++.|. +++. +-.-...+..++.+.+.++.= ...+.+ ..+..+.++++..+. +++.. ...-..+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 7788777764 2221 111233444455555554321 111222 234445555554543 22111 011134667
Q ss_pred CcEEEccCCcCccccC-ccc-cCCCCCCEEEccCccc-cccCCccc-cCCCCccEEECcCCcCc--cccccccCCCCCcc
Q 036729 236 LQILNLANNSLSGSIP-VEL-SHLFNLRYLNLLGNIF-DGEIPSEL-NKLAQLEELDLSKNNLS--GSISLLNTQLKNLE 309 (970)
Q Consensus 236 L~~L~L~~n~l~~~~~-~~l-~~l~~L~~L~L~~n~~-~~~~~~~l-~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~ 309 (970)
|+.|+.+++...+..+ ..+ .+..+|+.|-+++|+. +...-..+ .+++.|+.+++..+... +.+...-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 7888887765432211 122 3577888888888763 22222222 35678888888877543 22333446788888
Q ss_pred EEEccCCcccCCCc----hhhhcCCCCCcEEEccCCcCC-CCCccccccCCCCCEEeCCCCcCC-CC-CCcccccccccc
Q 036729 310 TLVLSDNAFTGSIP----IKFCLNNSSLQQLILARNKLS-GEFPLELLRCSSLQQLDLSDNSFK-GE-LPRSLDKLEELT 382 (970)
Q Consensus 310 ~L~L~~n~l~~~~~----~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~-~~-~~~~l~~l~~L~ 382 (970)
.+.++++....... .........++.+.++++... ......+..|++|+.+++-.++-. .. +...-..+++++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 88888776542221 111124678888999988654 345566778999999999887632 11 112223566666
Q ss_pred cccC
Q 036729 383 DLLL 386 (970)
Q Consensus 383 ~L~L 386 (970)
+..+
T Consensus 456 v~a~ 459 (483)
T KOG4341|consen 456 VHAY 459 (483)
T ss_pred ehhh
Confidence 5544
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.21 E-value=0.0006 Score=64.83 Aligned_cols=56 Identities=29% Similarity=0.284 Sum_probs=21.9
Q ss_pred CcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCc
Q 036729 236 LQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNN 293 (970)
Q Consensus 236 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 293 (970)
...+||++|.+... ..|..++.|..|.+.+|+++.+.|.--..+++|+.|.|.+|+
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 34444444444311 123344444444444444443333322223334444444333
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.18 E-value=0.00055 Score=65.10 Aligned_cols=82 Identities=29% Similarity=0.357 Sum_probs=40.6
Q ss_pred eeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccC-ccccCCCCCCEEEc
Q 036729 187 HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIP-VELSHLFNLRYLNL 265 (970)
Q Consensus 187 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L 265 (970)
+...+||++|.+... +.|..+++|.+|.+++|.++...|.--..+++|+.|.|.+|++..... .-+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 445566666665433 334455555555555555554444433445556666666655542110 11334445555554
Q ss_pred cCccc
Q 036729 266 LGNIF 270 (970)
Q Consensus 266 ~~n~~ 270 (970)
-+|..
T Consensus 121 l~Npv 125 (233)
T KOG1644|consen 121 LGNPV 125 (233)
T ss_pred cCCch
Confidence 44443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.13 E-value=0.00082 Score=62.15 Aligned_cols=123 Identities=18% Similarity=0.273 Sum_probs=61.3
Q ss_pred cccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCc
Q 036729 588 SELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQE 667 (970)
Q Consensus 588 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 667 (970)
.+|..+++|+.+.+.. .+...-...|..+++|+.+++..+ +.......|.++.+++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455666677777664 344444556777777888887764 5555556677777788888865 443344456777888
Q ss_pred cceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccccccccc
Q 036729 668 IGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL 716 (970)
Q Consensus 668 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 716 (970)
|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 888888665 554555667776 888887765 4443444455555554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.36 E-value=0.0028 Score=63.29 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=31.3
Q ss_pred ccccCccceEEcccC--cCcCCCCCCCCCCCcceEEEccCCcCccc-CCcccccccccceeccCCCccc
Q 036729 662 LGSLQEIGELDLSSN--NFNGTVPAEIGNCSKLLKLSLRGNNLSGK-IPPEIGNLTALNVLNLQRNSLS 727 (970)
Q Consensus 662 l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~ 727 (970)
+..+++|+.|+++.| +..+..+.....+++|++|++++|++... .-..+..+.+|..|++.+|.-+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 334555566666666 33333333333446666666666665420 0012334444555555555433
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.0021 Score=64.14 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=19.4
Q ss_pred CCCCCcEeecCCC--cCcCCCCcCCCCCCCCcEEEccCccC
Q 036729 112 QLQNLRILLLYSN--SFSGKIPPEIGFLNKLQVLRIGDNLL 150 (970)
Q Consensus 112 ~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~L~~n~~ 150 (970)
.+++|++|.+|.| .+.+.++.....+++|++|++++|++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 4455555555555 33333333334445555555555554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.00049 Score=68.46 Aligned_cols=63 Identities=29% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCC
Q 036729 280 KLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLS 344 (970)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 344 (970)
.|+.|++|.|+-|.++..-| +..|++|++|+|..|.+...-......++++|+.|.|..|.-.
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 44445555555554443322 3445555555555555543323333344445555555444443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.0005 Score=68.36 Aligned_cols=79 Identities=25% Similarity=0.366 Sum_probs=40.2
Q ss_pred ccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC-cccccccccceeccCCCccccccch-----hhhcc
Q 036729 664 SLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP-PEIGNLTALNVLNLQRNSLSGNIPS-----TIQQC 737 (970)
Q Consensus 664 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~-----~~~~l 737 (970)
.++.|++|.|+-|+++..-| +..|++|++|+|..|.|..... ..+.++++|+.|-|..|.-.|.-+. .+.-+
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 44555555555555554333 4555556666666555542211 2345566666666666655544432 23345
Q ss_pred cCCcEEE
Q 036729 738 KKLYELR 744 (970)
Q Consensus 738 ~~L~~L~ 744 (970)
++|+.||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 5555543
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.69 E-value=0.0013 Score=76.79 Aligned_cols=110 Identities=23% Similarity=0.169 Sum_probs=53.6
Q ss_pred CcccchhhccccccccC--CCccccCCceeeEEEcCCC-cCCCCC----cccccCCcccccccccccc-cCCCCcccccC
Q 036729 161 LTELRELAIAYCQLNGS--IPVEIGNLKHLTSLDLQMN-KLSGLI----PEAIHGCEELQKFAASNNM-LEGTIPSSIVL 232 (970)
Q Consensus 161 l~~L~~L~L~~~~~~~~--~p~~l~~l~~L~~L~Ls~n-~i~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~ 232 (970)
++.|+.|.+..+.-... .-.....+++|+.|+++++ ...... ......+++|+.|+++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56677777766643322 2234456677777777652 111111 1123345666666666665 44333333332
Q ss_pred -CCCCcEEEccCCc-CccccCcc-ccCCCCCCEEEccCccc
Q 036729 233 -LKSLQILNLANNS-LSGSIPVE-LSHLFNLRYLNLLGNIF 270 (970)
Q Consensus 233 -l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~L~~n~~ 270 (970)
+++|++|.+.++. ++...-.. ...+++|++|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5566666655554 33221111 23455566666655543
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.36 E-value=0.0016 Score=75.85 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=6.5
Q ss_pred cccccEEeccCCc
Q 036729 498 CKRLQQIALADNK 510 (970)
Q Consensus 498 ~~~L~~L~Ls~n~ 510 (970)
+..+..+++.++.
T Consensus 426 ~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 426 CSNLKDLDLSGCR 438 (482)
T ss_pred hhccccCCccCcc
Confidence 4445555555544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.22 E-value=0.0077 Score=35.63 Aligned_cols=21 Identities=38% Similarity=0.630 Sum_probs=12.4
Q ss_pred CCCEEeCCCCcCccccCcccCC
Q 036729 788 KLERLNISYNQLQGQVPASLGK 809 (970)
Q Consensus 788 ~L~~L~ls~N~l~~~~p~~l~~ 809 (970)
+|++|||++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 55555543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.02 E-value=0.022 Score=33.65 Aligned_cols=19 Identities=47% Similarity=0.539 Sum_probs=9.9
Q ss_pred CcEEECccccccccCchhhh
Q 036729 740 LYELRLSENFFTGSIPADLG 759 (970)
Q Consensus 740 L~~L~Ls~N~l~~~ip~~l~ 759 (970)
|++|||++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.61 E-value=0.004 Score=70.43 Aligned_cols=110 Identities=25% Similarity=0.223 Sum_probs=48.4
Q ss_pred cccEEEccCCcccCC----ccccccccCccceEEcccCcCcC----CCCCC----CCCCCcceEEEccCCcCcccCC---
Q 036729 643 KLAHLLLSNNELTGT----IPFWLGSLQEIGELDLSSNNFNG----TVPAE----IGNCSKLLKLSLRGNNLSGKIP--- 707 (970)
Q Consensus 643 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~----l~~l~~L~~L~L~~N~l~~~~~--- 707 (970)
.+++|++..|.+++. +...+...+.++.+|++.|.+.. .++.. +....++++|++.+|.++...-
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 344455555554432 23334445556666666665531 11111 2234556666666666552110
Q ss_pred -cccccccc-cceeccCCCccccc----cchhhhcc-cCCcEEECccccccc
Q 036729 708 -PEIGNLTA-LNVLNLQRNSLSGN----IPSTIQQC-KKLYELRLSENFFTG 752 (970)
Q Consensus 708 -~~l~~l~~-L~~L~L~~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~ 752 (970)
..+...++ +..+++..|.+... ....+..+ ..++.++++.|.++.
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 11222333 44456666655422 11122223 334555555555543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.25 E-value=0.0028 Score=71.70 Aligned_cols=83 Identities=23% Similarity=0.182 Sum_probs=39.4
Q ss_pred cchhhccccccccCC----CccccCCceeeEEEcCCCcCCCCCcccc----cCC-cccccccccccccCCC----Ccccc
Q 036729 164 LRELAIAYCQLNGSI----PVEIGNLKHLTSLDLQMNKLSGLIPEAI----HGC-EELQKFAASNNMLEGT----IPSSI 230 (970)
Q Consensus 164 L~~L~L~~~~~~~~~----p~~l~~l~~L~~L~Ls~n~i~~~~~~~l----~~l-~~L~~L~l~~n~l~~~----~~~~l 230 (970)
+.+|.|.+|.+.... ...+..+.+|+.|++++|.+.+.....+ ... ..+++|++..|.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 445555555444322 2234445566666666666553322221 121 4455566665555433 22333
Q ss_pred cCCCCCcEEEccCCcC
Q 036729 231 VLLKSLQILNLANNSL 246 (970)
Q Consensus 231 ~~l~~L~~L~L~~n~l 246 (970)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4455555556655554
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.43 E-value=0.035 Score=54.21 Aligned_cols=87 Identities=23% Similarity=0.251 Sum_probs=62.2
Q ss_pred cccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCC
Q 036729 710 IGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKL 789 (970)
Q Consensus 710 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L 789 (970)
+......+.||++.|++.. ....|.-++.+..||++.|++. ..|.+++++..+.. +++..|..+ ..|.+++.++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~-~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVN-AASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHH-HHhhccchh-hCCccccccCCc
Confidence 4445566677777776642 2234555666777788877776 67888888888877 788777777 677888888888
Q ss_pred CEEeCCCCcCc
Q 036729 790 ERLNISYNQLQ 800 (970)
Q Consensus 790 ~~L~ls~N~l~ 800 (970)
+++++-.|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888777654
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.31 E-value=0.049 Score=53.24 Aligned_cols=88 Identities=24% Similarity=0.203 Sum_probs=76.1
Q ss_pred hhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCc
Q 036729 733 TIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTS 812 (970)
Q Consensus 733 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~ 812 (970)
.+......+.||++.|++. ..-..+.-++.+.. +|+|.|.+. ..|..++++..+..+++.+|..+ ..|.++...+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~r-l~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVR-LDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHH-HhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 4566677899999999887 45567788889988 999999988 77889999999999999888887 68999999999
Q ss_pred CcEEecCCCccc
Q 036729 813 LHVLNLSNNHLQ 824 (970)
Q Consensus 813 L~~l~ls~N~l~ 824 (970)
+++++.-.|+|.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999999875
No 78
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.43 E-value=0.4 Score=42.56 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=18.1
Q ss_pred ccccCceEEEEehhhHHHHHHHHHHHHHHHHH
Q 036729 862 KRLSNTAVVVIITAILFTSAVICLIMLYIMLR 893 (970)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (970)
++.....+++|+++++++++.++++++|+++|
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccceeehhHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777665555545554433
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.81 E-value=0.16 Score=48.92 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=50.0
Q ss_pred CCcEEEccCccCCccCCccccCCcccchhhccccccccC-CCcccc-CCceeeEEEcCCCc-CCCCCcccccCCcccccc
Q 036729 139 KLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGS-IPVEIG-NLKHLTSLDLQMNK-LSGLIPEAIHGCEELQKF 215 (970)
Q Consensus 139 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~-~p~~l~-~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L 215 (970)
.++.+|-+++.+..+--+.+.+++.++.|.+.+|.-.+. --..++ -.++|+.|++++|. |+......+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456666666666555556666677777777776653211 111122 23678888888774 776666667777777777
Q ss_pred cccc
Q 036729 216 AASN 219 (970)
Q Consensus 216 ~l~~ 219 (970)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6653
No 80
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=85.72 E-value=0.75 Score=30.81 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=10.5
Q ss_pred EEEehhhHHHHHHHHHHHHHH
Q 036729 870 VVIITAILFTSAVICLIMLYI 890 (970)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~ 890 (970)
++++++++++++++++.++++
T Consensus 6 IaIIv~V~vg~~iiii~~~~Y 26 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYY 26 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444443
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.63 E-value=0.47 Score=25.94 Aligned_cols=10 Identities=50% Similarity=0.491 Sum_probs=3.1
Q ss_pred CcEeecCCCc
Q 036729 116 LRILLLYSNS 125 (970)
Q Consensus 116 L~~L~Ls~n~ 125 (970)
||.|+|++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.63 E-value=1.4 Score=27.14 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=11.2
Q ss_pred CCCCCEEeCCCCcCccc
Q 036729 786 LLKLERLNISYNQLQGQ 802 (970)
Q Consensus 786 l~~L~~L~ls~N~l~~~ 802 (970)
+++|++|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35677777777777644
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.63 E-value=1.4 Score=27.14 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=11.2
Q ss_pred CCCCCEEeCCCCcCccc
Q 036729 786 LLKLERLNISYNQLQGQ 802 (970)
Q Consensus 786 l~~L~~L~ls~N~l~~~ 802 (970)
+++|++|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35677777777777644
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.45 E-value=1.4 Score=27.16 Aligned_cols=22 Identities=50% Similarity=0.649 Sum_probs=13.4
Q ss_pred CceeeEEEcCCCcCCCCCcccc
Q 036729 185 LKHLTSLDLQMNKLSGLIPEAI 206 (970)
Q Consensus 185 l~~L~~L~Ls~n~i~~~~~~~l 206 (970)
+++|++|+|++|+++...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3466777777777765544444
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.45 E-value=1.4 Score=27.16 Aligned_cols=22 Identities=50% Similarity=0.649 Sum_probs=13.4
Q ss_pred CceeeEEEcCCCcCCCCCcccc
Q 036729 185 LKHLTSLDLQMNKLSGLIPEAI 206 (970)
Q Consensus 185 l~~L~~L~Ls~n~i~~~~~~~l 206 (970)
+++|++|+|++|+++...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3466777777777765544444
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.12 E-value=0.93 Score=27.30 Aligned_cols=16 Identities=38% Similarity=0.360 Sum_probs=7.5
Q ss_pred cCCcEEECcccccccc
Q 036729 738 KKLYELRLSENFFTGS 753 (970)
Q Consensus 738 ~~L~~L~Ls~N~l~~~ 753 (970)
++|++|+|++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455556665555543
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.52 E-value=0.63 Score=45.03 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=15.2
Q ss_pred ccEEECcCCcCccccccccCCCCCccEEEccCC
Q 036729 284 LEELDLSKNNLSGSISLLNTQLKNLETLVLSDN 316 (970)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 316 (970)
++.+|-++..+...--..+..++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 444444444444333333444455555555444
No 88
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=74.11 E-value=5.7 Score=38.68 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=4.7
Q ss_pred EEEEehhhHHH
Q 036729 869 VVVIITAILFT 879 (970)
Q Consensus 869 ~~~~~~~~~~~ 879 (970)
+++++++++.+
T Consensus 40 ~iaiVAG~~tV 50 (221)
T PF08374_consen 40 MIAIVAGIMTV 50 (221)
T ss_pred eeeeecchhhh
Confidence 34444444443
No 89
>PF15050 SCIMP: SCIMP protein
Probab=68.95 E-value=2.8 Score=36.13 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 036729 880 SAVICLIMLYIMLRIWLNW 898 (970)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~ 898 (970)
+.+++.+++||++||..+.
T Consensus 19 vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 19 VSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3344445566666655443
No 90
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=66.02 E-value=2.3 Score=32.51 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=0.0
Q ss_pred EEEehhhHHHHHHHHHHHHHHHHH
Q 036729 870 VVIITAILFTSAVICLIMLYIMLR 893 (970)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~~~ 893 (970)
+++++++++++++++++++++++|
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR 35 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYR 35 (64)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333333334444444
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.61 E-value=6 Score=24.47 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=11.3
Q ss_pred CCCCCEEeCCCCcCc
Q 036729 786 LLKLERLNISYNQLQ 800 (970)
Q Consensus 786 l~~L~~L~ls~N~l~ 800 (970)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357788888888775
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=60.57 E-value=6.2 Score=53.25 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=24.2
Q ss_pred eCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 793 NISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 793 ~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
||++|+|+..-+..|..+++|+.|+|++|++.|.|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 466666666555666666677777777777777766
No 93
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=60.33 E-value=6.2 Score=33.76 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=9.2
Q ss_pred ccCceEEEEehhhHHHH
Q 036729 864 LSNTAVVVIITAILFTS 880 (970)
Q Consensus 864 ~~~~~~~~~~~~~~~~~ 880 (970)
.....+++|++++++++
T Consensus 63 ls~gaiagi~vg~~~~v 79 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVV 79 (96)
T ss_pred cccccEEEEEeehhhHH
Confidence 33456666666655433
No 94
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=59.74 E-value=5.2 Score=36.80 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=11.5
Q ss_pred eEEEEehhhHHHHHHHHHHHHHH
Q 036729 868 AVVVIITAILFTSAVICLIMLYI 890 (970)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~ 890 (970)
.+|++++++.+.+++++++++|+
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~ 72 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFI 72 (154)
T ss_pred EEEEEEecccHHHHHHHHHhhee
Confidence 45666666555444333333333
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=53.73 E-value=63 Score=35.99 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=32.1
Q ss_pred CCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCcccc---CCceeeEEEcCCCcCCCCCcccc
Q 036729 138 NKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG---NLKHLTSLDLQMNKLSGLIPEAI 206 (970)
Q Consensus 138 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~---~l~~L~~L~Ls~n~i~~~~~~~l 206 (970)
+.++++|++.|.+....|-.+..-.. -+.++.|+++......+. .-..+++++++.|.....+|..+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~ 234 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTL 234 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHH
Confidence 34566666666665555544322100 044455544422111111 11246677777777666666543
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=52.53 E-value=57 Score=36.32 Aligned_cols=61 Identities=26% Similarity=0.316 Sum_probs=35.8
Q ss_pred CCcEEEccCCcCCCCCcc---ccccCCCCCEEeCCCCcCCC----CCCcccccccccccccCCccccc
Q 036729 332 SLQQLILARNKLSGEFPL---ELLRCSSLQQLDLSDNSFKG----ELPRSLDKLEELTDLLLNNNSFT 392 (970)
Q Consensus 332 ~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~ 392 (970)
-+..+.++.+.+...... ....-+.+..|++++|.... .+|.....-..++.+..+.|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 455666666665532222 23345678888888887643 24555555566666666666543
No 97
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.30 E-value=12 Score=23.56 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=9.0
Q ss_pred CCCCEEeCCCCcCc
Q 036729 787 LKLERLNISYNQLQ 800 (970)
Q Consensus 787 ~~L~~L~ls~N~l~ 800 (970)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666777777664
No 98
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=44.25 E-value=16 Score=22.64 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=10.1
Q ss_pred CCcEeecCCCcCcCCCCc
Q 036729 115 NLRILLLYSNSFSGKIPP 132 (970)
Q Consensus 115 ~L~~L~Ls~n~~~~~~p~ 132 (970)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666666666665 4443
No 99
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=43.59 E-value=39 Score=30.67 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=17.3
Q ss_pred ccCceEEEEehhhHHHHHHHHHHHHHH
Q 036729 864 LSNTAVVVIITAILFTSAVICLIMLYI 890 (970)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (970)
....++.+|+.++++++.+++.+++.+
T Consensus 58 lsgtAIaGIVfgiVfimgvva~i~icv 84 (155)
T PF10873_consen 58 LSGTAIAGIVFGIVFIMGVVAGIAICV 84 (155)
T ss_pred cccceeeeeehhhHHHHHHHHHHHHHH
Confidence 345677788888877766655544433
No 100
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=42.97 E-value=18 Score=38.14 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=3.5
Q ss_pred HHHHHHHhh
Q 036729 887 MLYIMLRIW 895 (970)
Q Consensus 887 ~~~~~~~~~ 895 (970)
++|+..|+|
T Consensus 274 IIYLILRYR 282 (299)
T PF02009_consen 274 IIYLILRYR 282 (299)
T ss_pred HHHHHHHHH
Confidence 334443433
No 101
>PF15069 FAM163: FAM163 family
Probab=37.62 E-value=90 Score=28.59 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=11.5
Q ss_pred EEehhhHHHHHHHHHHHHHHHHHhh
Q 036729 871 VIITAILFTSAVICLIMLYIMLRIW 895 (970)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (970)
+|..++++.+++++++++.++.|..
T Consensus 7 VItGgILAtVILLcIIaVLCYCRLQ 31 (143)
T PF15069_consen 7 VITGGILATVILLCIIAVLCYCRLQ 31 (143)
T ss_pred EEechHHHHHHHHHHHHHHHHHhhH
Confidence 3444444444444444444444433
No 102
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=32.99 E-value=50 Score=27.07 Aligned_cols=9 Identities=0% Similarity=0.257 Sum_probs=3.4
Q ss_pred HHHHHHHhh
Q 036729 887 MLYIMLRIW 895 (970)
Q Consensus 887 ~~~~~~~~~ 895 (970)
++++++.++
T Consensus 50 lwfvCC~kR 58 (94)
T PF05393_consen 50 LWFVCCKKR 58 (94)
T ss_pred HHHHHHHHh
Confidence 333333333
No 103
>PTZ00370 STEVOR; Provisional
Probab=32.25 E-value=33 Score=35.34 Aligned_cols=10 Identities=20% Similarity=0.415 Sum_probs=4.7
Q ss_pred HHHhhhhhhc
Q 036729 891 MLRIWLNWRQ 900 (970)
Q Consensus 891 ~~~~~~~~~~ 900 (970)
++|++..||+
T Consensus 279 yrrRK~swkh 288 (296)
T PTZ00370 279 YRRRKNSWKH 288 (296)
T ss_pred HHhhcchhHH
Confidence 3444444554
No 104
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.91 E-value=43 Score=30.06 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=12.1
Q ss_pred EEEehhhHHHHHH-HHHHHHHHHHHhhhhhhc
Q 036729 870 VVIITAILFTSAV-ICLIMLYIMLRIWLNWRQ 900 (970)
Q Consensus 870 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 900 (970)
...++++++++++ ++.+++++.+..||+.|+
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444443333 333344445555544443
No 105
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.61 E-value=46 Score=45.60 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=53.7
Q ss_pred hCCCCcccccCCccccCCCCCCEEeCCCCcCccccC-cccCCCCcCcEEe--c-CCCcccccCCccccCCCCcccCCCCC
Q 036729 769 DLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP-ASLGKLTSLHVLN--L-SNNHLQGQLPLTFSGFPLSSFLGNAK 844 (970)
Q Consensus 769 ~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p-~~l~~l~~L~~l~--l-s~N~l~g~~p~~~~~~~~~~~~~n~~ 844 (970)
||++|+|+-.-+..|..+.+|+.|+|++|.+.--=. .+|.. .++.-. + ....+.|.-|..+.+.+...+.....
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~--WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~ 78 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPR--WAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDS 78 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHH--HHHhcCccccCCcccCCCCChHHCCCCcccCCcccC
Confidence 678888887777788889999999999997753210 00110 111111 1 23457788887777776665555556
Q ss_pred CCCCCCCCCCC
Q 036729 845 LCGPPLLSCSE 855 (970)
Q Consensus 845 lc~~~~~~c~~ 855 (970)
.|..+...|.+
T Consensus 79 ~C~~~y~~C~~ 89 (2740)
T TIGR00864 79 GCDEEYVACLK 89 (2740)
T ss_pred CCCCcceeeec
Confidence 68777666754
No 106
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=29.55 E-value=46 Score=34.30 Aligned_cols=8 Identities=25% Similarity=0.655 Sum_probs=3.2
Q ss_pred Hhhhhhhc
Q 036729 893 RIWLNWRQ 900 (970)
Q Consensus 893 ~~~~~~~~ 900 (970)
|++..||+
T Consensus 285 rRK~swkh 292 (295)
T TIGR01478 285 RRKKSWKH 292 (295)
T ss_pred hhcccccc
Confidence 33334443
No 107
>PTZ00046 rifin; Provisional
Probab=27.77 E-value=41 Score=36.22 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=5.4
Q ss_pred HHHHHHHHhhhh
Q 036729 886 IMLYIMLRIWLN 897 (970)
Q Consensus 886 ~~~~~~~~~~~~ 897 (970)
+++|...|+||.
T Consensus 332 vIIYLILRYRRK 343 (358)
T PTZ00046 332 VIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHhhhc
Confidence 344444454443
No 108
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=27.61 E-value=83 Score=29.91 Aligned_cols=8 Identities=25% Similarity=0.717 Sum_probs=3.5
Q ss_pred eEeecccc
Q 036729 923 LVYEDDHK 930 (970)
Q Consensus 923 ~~~~~~~~ 930 (970)
.+|+..|.
T Consensus 154 TvFd~~~~ 161 (163)
T PF06679_consen 154 TVFDANHP 161 (163)
T ss_pred ceeeeccc
Confidence 34444443
No 109
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=27.38 E-value=42 Score=35.98 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=5.4
Q ss_pred HHHHHHHHhhhh
Q 036729 886 IMLYIMLRIWLN 897 (970)
Q Consensus 886 ~~~~~~~~~~~~ 897 (970)
+++|...|+||.
T Consensus 327 vIIYLILRYRRK 338 (353)
T TIGR01477 327 VIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHhhhc
Confidence 344444454443
No 110
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.96 E-value=34 Score=38.84 Aligned_cols=12 Identities=50% Similarity=0.695 Sum_probs=6.7
Q ss_pred CCCccEEECcCC
Q 036729 281 LAQLEELDLSKN 292 (970)
Q Consensus 281 l~~L~~L~L~~n 292 (970)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 355555555555
No 111
>PHA03265 envelope glycoprotein D; Provisional
Probab=26.08 E-value=66 Score=34.03 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=11.2
Q ss_pred EEEEehhhHHHHHHHHHHHHHHHHHhh
Q 036729 869 VVVIITAILFTSAVICLIMLYIMLRIW 895 (970)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (970)
.++++++..++..+++.+++|+++|++
T Consensus 349 ~~g~~ig~~i~glv~vg~il~~~~rr~ 375 (402)
T PHA03265 349 FVGISVGLGIAGLVLVGVILYVCLRRK 375 (402)
T ss_pred ccceEEccchhhhhhhhHHHHHHhhhh
Confidence 344444444433333333444444433
No 112
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=26.00 E-value=2.2e+02 Score=32.04 Aligned_cols=34 Identities=15% Similarity=-0.090 Sum_probs=18.7
Q ss_pred cCCCceeEEEeecC--CccceeeeeeccccChhhhc
Q 036729 931 RRNGEFWRVTVPSQ--SQGEVQNHILHFKMDSKAMN 964 (970)
Q Consensus 931 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~ 964 (970)
...|.|+.|+-.-. ...|||++=.+-|+.+.+.+
T Consensus 218 i~~Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek 253 (534)
T KOG3653|consen 218 IGRGRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEK 253 (534)
T ss_pred hhcCccceeehhhccCceeEEEecCHHHHHHHHhHH
Confidence 34567777773222 33377776666555544443
No 113
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=24.87 E-value=67 Score=31.32 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=2.7
Q ss_pred EEehhhH
Q 036729 871 VIITAIL 877 (970)
Q Consensus 871 ~~~~~~~ 877 (970)
+++++++
T Consensus 79 ~iivgvi 85 (179)
T PF13908_consen 79 GIIVGVI 85 (179)
T ss_pred eeeeehh
Confidence 3444333
No 114
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=24.75 E-value=24 Score=36.93 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhh
Q 036729 883 ICLIMLYIMLRIW 895 (970)
Q Consensus 883 ~~~~~~~~~~~~~ 895 (970)
++++++++++|++
T Consensus 161 IA~iIa~icyrrk 173 (290)
T PF05454_consen 161 IAGIIACICYRRK 173 (290)
T ss_dssp -------------
T ss_pred HHHHHHHHhhhhh
Confidence 3333444444433
No 115
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=23.80 E-value=61 Score=36.22 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=11.8
Q ss_pred ccccCceEEEEehhhHHHH
Q 036729 862 KRLSNTAVVVIITAILFTS 880 (970)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~ 880 (970)
...+..+|++|.|+++++|
T Consensus 362 s~LstgaIaGIsvavvvvV 380 (397)
T PF03302_consen 362 SGLSTGAIAGISVAVVVVV 380 (397)
T ss_pred ccccccceeeeeehhHHHH
Confidence 3455667777777665544
No 116
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=23.30 E-value=2e+02 Score=30.40 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=8.4
Q ss_pred CceEEEEehhhHHHHHHHHH
Q 036729 866 NTAVVVIITAILFTSAVICL 885 (970)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~ 885 (970)
...++.|..++.++.+++++
T Consensus 226 ~G~VVlIslAiALG~v~ll~ 245 (281)
T PF12768_consen 226 RGFVVLISLAIALGTVFLLV 245 (281)
T ss_pred ceEEEEEehHHHHHHHHHHH
Confidence 33444444444444333333
No 117
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=22.25 E-value=29 Score=32.38 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=0.0
Q ss_pred cCceEEEEehhhHHHHHHHHHHHHHHHH
Q 036729 865 SNTAVVVIITAILFTSAVICLIMLYIML 892 (970)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (970)
....+++|++++++++.++..+++++++
T Consensus 127 ~T~tLVGIIVGVLlaIG~igGIIivvvR 154 (162)
T PF05808_consen 127 STVTLVGIIVGVLLAIGFIGGIIIVVVR 154 (162)
T ss_dssp ----------------------------
T ss_pred ceeeeeeehhhHHHHHHHHhheeeEEee
Confidence 3445667777776665555555554443
No 118
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=20.97 E-value=27 Score=37.54 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=11.2
Q ss_pred EEEehhhHHHHHHHHHHHHHHHHH
Q 036729 870 VVIITAILFTSAVICLIMLYIMLR 893 (970)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~~~ 893 (970)
+-|+++++++++++++++.|++.|
T Consensus 273 vPIaVG~~La~lvlivLiaYli~R 296 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVLIAYLIGR 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEe
Confidence 344555555444444444444433
No 119
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.51 E-value=2.2e+02 Score=21.95 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=6.0
Q ss_pred ccCceEEEEehhhH
Q 036729 864 LSNTAVVVIITAIL 877 (970)
Q Consensus 864 ~~~~~~~~~~~~~~ 877 (970)
.+...++.++++..
T Consensus 10 lnPGlIVLlvV~g~ 23 (69)
T PF04689_consen 10 LNPGLIVLLVVAGL 23 (69)
T ss_pred CCCCeEEeehHHHH
Confidence 33444444444433
No 120
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=20.20 E-value=73 Score=19.43 Aligned_cols=13 Identities=46% Similarity=0.889 Sum_probs=8.5
Q ss_pred CCCCCEEeCCCCc
Q 036729 354 CSSLQQLDLSDNS 366 (970)
Q Consensus 354 ~~~L~~L~Ls~n~ 366 (970)
|++|+.|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4567777777664
Done!