Query 036729
Match_columns 970
No_of_seqs 966 out of 5793
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 07:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1E-92 3.5E-97 867.8 44.3 739 18-863 5-758 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-72 4.5E-77 689.9 42.4 633 67-708 78-722 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-59 1.6E-63 565.9 48.5 586 93-751 7-622 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-59 7E-64 569.1 44.9 596 189-834 7-634 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 3.4E-55 1.2E-59 541.6 31.1 532 238-828 8-564 (844)
6 3t6q_A CD180 antigen; protein- 100.0 3.3E-54 1.1E-58 516.2 37.8 533 286-828 16-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 4E-53 1.4E-57 506.8 40.3 537 71-704 17-561 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-53 1.1E-57 507.5 34.9 530 284-828 13-562 (606)
9 4eco_A Uncharacterized protein 100.0 5.2E-54 1.8E-58 513.0 19.0 474 23-536 28-600 (636)
10 3vq2_A TLR4, TOLL-like recepto 100.0 7.5E-52 2.6E-56 495.8 36.5 519 258-804 32-562 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 1.1E-52 3.6E-57 507.7 28.7 479 22-534 266-862 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 9.7E-51 3.3E-55 501.8 43.1 532 190-753 8-562 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 7.2E-48 2.4E-52 458.3 30.9 487 332-828 29-535 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 3E-46 1E-50 444.3 37.2 519 92-708 9-536 (570)
15 4eco_A Uncharacterized protein 100.0 3.8E-47 1.3E-51 453.7 24.0 458 331-826 81-602 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5E-46 1.7E-50 439.9 26.7 486 310-828 9-514 (549)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1E-45 3.6E-50 437.2 29.1 482 53-559 3-509 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-45 6.1E-50 431.7 21.4 454 334-828 3-485 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 2.2E-44 7.6E-49 435.2 25.6 444 355-828 323-844 (876)
20 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-42 4E-47 419.5 37.1 516 235-828 53-584 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 6.8E-44 2.3E-48 418.3 24.2 452 69-561 3-482 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-42 1.6E-46 414.2 40.1 541 94-753 35-582 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-42 1E-46 407.5 22.6 460 330-828 30-514 (562)
24 1ogq_A PGIP-2, polygalacturona 100.0 4.8E-42 1.6E-46 372.7 16.3 293 21-317 2-302 (313)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.7E-41 2E-45 396.5 23.9 458 304-804 29-514 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 6.5E-39 2.2E-43 369.5 27.8 354 451-828 30-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 4.7E-39 1.6E-43 366.5 24.4 407 354-828 10-433 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 4.1E-38 1.4E-42 362.8 26.7 374 90-516 30-412 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 5.2E-38 1.8E-42 357.9 24.3 411 331-810 11-439 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-36 5.4E-41 345.9 21.1 375 381-831 20-394 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 4.3E-36 1.5E-40 342.4 23.6 368 366-809 29-396 (457)
32 1o6v_A Internalin A; bacterial 100.0 6.8E-35 2.3E-39 335.9 29.7 347 425-826 44-390 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 4.6E-35 1.6E-39 339.1 26.7 325 524-849 33-360 (477)
34 1o6v_A Internalin A; bacterial 100.0 1.5E-34 5.1E-39 333.0 29.8 346 401-801 44-389 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 3.9E-33 1.3E-37 322.9 27.4 323 406-754 14-336 (477)
36 4fcg_A Uncharacterized protein 100.0 2.4E-34 8.3E-39 313.8 13.9 268 20-316 22-311 (328)
37 1ogq_A PGIP-2, polygalacturona 100.0 3.1E-34 1.1E-38 311.2 14.1 255 596-853 52-312 (313)
38 3oja_B Anopheles plasmodium-re 100.0 5.3E-33 1.8E-37 329.9 25.3 334 474-849 50-384 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 1.9E-32 6.4E-37 308.2 26.5 334 474-849 44-378 (390)
40 3o6n_A APL1; leucine-rich repe 100.0 1E-32 3.5E-37 310.3 23.1 350 44-441 3-353 (390)
41 3oja_B Anopheles plasmodium-re 100.0 4.7E-32 1.6E-36 321.7 24.3 348 43-441 8-359 (597)
42 4fmz_A Internalin; leucine ric 100.0 2.4E-31 8.1E-36 294.4 25.0 307 471-824 40-346 (347)
43 4fmz_A Internalin; leucine ric 100.0 6.9E-31 2.4E-35 290.6 26.7 308 446-800 39-346 (347)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.9E-29 9.9E-34 275.3 24.6 266 548-822 55-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 1E-28 3.4E-33 270.9 26.7 247 499-751 52-306 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 9.4E-33 3.2E-37 318.7 -7.2 374 428-826 4-442 (461)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-28 6E-33 269.1 25.4 288 404-725 34-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 4E-28 1.4E-32 266.1 27.6 289 404-725 32-330 (330)
49 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-31 3.7E-36 309.8 -6.9 351 475-826 3-413 (461)
50 3ogk_B Coronatine-insensitive 100.0 8.8E-32 3E-36 321.1 -9.8 429 53-489 41-527 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 8.9E-29 3E-33 273.9 14.7 278 547-828 31-318 (353)
52 2z66_A Variable lymphocyte rec 100.0 2.2E-28 7.5E-33 265.1 16.6 250 574-828 11-265 (306)
53 2z66_A Variable lymphocyte rec 100.0 3.6E-28 1.2E-32 263.4 14.2 284 551-838 11-301 (306)
54 2z80_A TOLL-like receptor 2, v 99.9 4.6E-28 1.6E-32 268.2 14.5 286 47-347 23-317 (353)
55 4fcg_A Uncharacterized protein 99.9 1E-27 3.6E-32 261.3 17.0 225 594-824 81-314 (328)
56 3zyi_A Leucine-rich repeat-con 99.9 4.8E-27 1.7E-31 269.2 22.2 250 573-828 57-307 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 9.1E-27 3.1E-31 265.9 22.3 250 573-828 46-296 (440)
58 3ogk_B Coronatine-insensitive 99.9 3.6E-30 1.2E-34 307.1 -7.4 428 105-557 64-548 (592)
59 1wwl_A Monocyte differentiatio 99.9 2.1E-28 7.2E-33 265.5 5.8 246 570-826 43-311 (312)
60 1ozn_A Reticulon 4 receptor; N 99.9 5.7E-27 1.9E-31 251.1 15.8 209 619-828 33-242 (285)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-26 5.7E-31 247.4 18.6 258 573-835 14-272 (285)
62 3zyi_A Leucine-rich repeat-con 99.9 4.5E-26 1.5E-30 261.1 21.0 228 90-319 75-303 (452)
63 1wwl_A Monocyte differentiatio 99.9 2.2E-28 7.5E-33 265.3 0.5 265 45-319 22-309 (312)
64 3zyj_A Leucine-rich repeat-con 99.9 2.9E-25 9.8E-30 253.4 21.2 248 549-801 45-293 (440)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-27 7.7E-32 258.0 3.1 246 568-828 32-280 (317)
66 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-25 4.1E-30 263.2 16.9 287 43-398 11-303 (622)
67 3oja_A Leucine-rich immune mol 99.9 1.6E-26 5.5E-31 265.9 9.2 234 571-819 35-270 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-26 6.5E-31 250.7 8.5 266 478-781 13-281 (317)
69 2z62_A TOLL-like receptor 4, v 99.9 6.7E-25 2.3E-29 233.7 19.8 209 618-828 28-241 (276)
70 2o6q_A Variable lymphocyte rec 99.9 8.4E-25 2.9E-29 231.8 19.6 217 51-295 2-218 (270)
71 2p1m_B Transport inhibitor res 99.9 2.1E-29 7.1E-34 300.8 -18.9 449 53-534 34-542 (594)
72 3oja_A Leucine-rich immune mol 99.9 1E-25 3.4E-30 259.2 11.8 227 592-833 32-260 (487)
73 3g06_A SSPH2 (leucine-rich rep 99.9 3.7E-23 1.3E-27 242.2 28.9 269 428-763 41-309 (622)
74 2p1m_B Transport inhibitor res 99.9 9.4E-28 3.2E-32 286.4 -12.0 447 93-559 46-543 (594)
75 2o6q_A Variable lymphocyte rec 99.9 2.1E-23 7.2E-28 221.0 20.8 205 620-828 18-222 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 2E-23 6.8E-28 222.3 18.2 209 594-804 28-241 (276)
77 3rfs_A Internalin B, repeat mo 99.9 6.9E-24 2.4E-28 224.9 13.1 227 595-835 20-246 (272)
78 3rfs_A Internalin B, repeat mo 99.9 5.1E-23 1.7E-27 218.2 18.0 185 590-784 59-243 (272)
79 1p9a_G Platelet glycoprotein I 99.9 6.8E-23 2.3E-27 218.8 18.4 207 614-828 6-212 (290)
80 2ast_B S-phase kinase-associat 99.9 9E-25 3.1E-29 240.3 -3.4 235 52-292 35-282 (336)
81 1p9a_G Platelet glycoprotein I 99.9 8.8E-22 3E-26 210.1 17.5 203 591-801 7-209 (290)
82 3m19_A Variable lymphocyte rec 99.9 6.3E-22 2.1E-26 207.1 15.9 192 52-273 3-194 (251)
83 3goz_A Leucine-rich repeat-con 99.9 1.2E-23 4E-28 233.3 2.8 253 575-828 3-301 (362)
84 4glp_A Monocyte differentiatio 99.9 3E-22 1E-26 216.9 13.8 203 617-825 90-308 (310)
85 2ca6_A RAN GTPase-activating p 99.9 6.2E-24 2.1E-28 238.1 -1.7 242 586-828 24-320 (386)
86 2xwt_C Thyrotropin receptor; s 99.9 8.2E-22 2.8E-26 204.7 13.2 197 619-822 32-237 (239)
87 3m19_A Variable lymphocyte rec 99.9 3.5E-21 1.2E-25 201.5 17.5 160 667-827 36-195 (251)
88 2ast_B S-phase kinase-associat 99.9 5.7E-23 1.9E-27 225.9 2.6 252 572-832 49-314 (336)
89 2ca6_A RAN GTPase-activating p 99.9 1E-23 3.5E-28 236.4 -5.1 248 539-804 24-320 (386)
90 3goz_A Leucine-rich repeat-con 99.8 4.1E-23 1.4E-27 228.9 -0.4 81 71-151 3-93 (362)
91 4glp_A Monocyte differentiatio 99.8 7.5E-22 2.6E-26 213.7 9.1 201 595-801 92-308 (310)
92 2xwt_C Thyrotropin receptor; s 99.8 3.3E-21 1.1E-25 200.1 12.8 196 595-797 32-236 (239)
93 1h6u_A Internalin H; cell adhe 99.8 5.2E-21 1.8E-25 206.4 13.7 192 593-825 40-231 (308)
94 1h6u_A Internalin H; cell adhe 99.8 8.5E-21 2.9E-25 204.7 14.2 176 614-828 37-212 (308)
95 2o6s_A Variable lymphocyte rec 99.8 5E-20 1.7E-24 186.7 16.4 192 598-804 11-202 (208)
96 3cvr_A Invasion plasmid antige 99.8 1.5E-20 5E-25 217.3 11.2 207 46-306 35-254 (571)
97 2o6s_A Variable lymphocyte rec 99.8 7.4E-20 2.5E-24 185.4 14.1 185 53-259 6-190 (208)
98 3cvr_A Invasion plasmid antige 99.8 9.7E-20 3.3E-24 210.5 14.6 188 595-811 60-254 (571)
99 4ay9_X Follicle-stimulating ho 99.8 6.7E-19 2.3E-23 193.8 16.2 238 575-822 14-257 (350)
100 4ay9_X Follicle-stimulating ho 99.8 7.8E-19 2.7E-23 193.3 16.0 240 551-798 13-257 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 8.7E-19 3E-23 178.7 13.7 155 670-828 15-170 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 2E-18 6.9E-23 176.0 13.6 138 690-828 32-169 (220)
103 2xot_A Amphoterin-induced prot 99.8 1.3E-18 4.5E-23 192.3 10.4 180 621-828 21-206 (361)
104 3e6j_A Variable lymphocyte rec 99.7 7.5E-18 2.6E-22 173.0 14.8 163 46-224 11-173 (229)
105 3e6j_A Variable lymphocyte rec 99.7 7.2E-18 2.5E-22 173.2 14.5 137 690-828 40-176 (229)
106 1m9s_A Internalin B; cell inva 99.7 4.3E-18 1.5E-22 199.2 13.6 189 572-777 23-211 (605)
107 1h6t_A Internalin B; cell adhe 99.7 6.2E-18 2.1E-22 180.5 12.8 188 597-825 27-214 (291)
108 2v9t_B SLIT homolog 2 protein 99.7 1.4E-17 4.9E-22 169.6 14.6 154 597-753 14-167 (220)
109 1h6t_A Internalin B; cell adhe 99.7 3.6E-18 1.2E-22 182.4 10.4 189 572-801 26-214 (291)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 1.3E-17 4.5E-22 169.9 13.5 136 620-755 34-170 (220)
111 1m9s_A Internalin B; cell inva 99.7 8.2E-18 2.8E-22 196.8 13.4 236 550-812 24-259 (605)
112 2xot_A Amphoterin-induced prot 99.7 1.5E-17 5E-22 183.9 14.1 176 573-751 21-202 (361)
113 4b8c_D Glucose-repressible alc 99.7 3E-18 1E-22 206.0 8.7 192 624-826 207-406 (727)
114 4b8c_D Glucose-repressible alc 99.7 3.4E-19 1.1E-23 214.3 0.1 218 23-252 130-359 (727)
115 1dce_A Protein (RAB geranylger 99.7 5.5E-20 1.9E-24 214.0 -8.5 181 111-298 346-549 (567)
116 1dce_A Protein (RAB geranylger 99.7 4.5E-20 1.5E-24 214.8 -9.4 203 591-817 346-566 (567)
117 4ezg_A Putative uncharacterize 99.7 5.2E-17 1.8E-21 162.6 9.9 155 639-825 41-195 (197)
118 1w8a_A SLIT protein; signaling 99.7 4.7E-17 1.6E-21 162.0 9.0 113 715-828 30-143 (192)
119 1w8a_A SLIT protein; signaling 99.7 7.4E-17 2.5E-21 160.5 9.8 175 669-848 11-186 (192)
120 4ezg_A Putative uncharacterize 99.7 1.1E-16 3.7E-21 160.3 10.2 135 613-752 39-173 (197)
121 1xeu_A Internalin C; cellular 99.7 4.6E-17 1.6E-21 170.8 7.2 170 617-826 18-187 (263)
122 1xeu_A Internalin C; cellular 99.7 4.2E-17 1.4E-21 171.1 6.3 151 590-753 37-187 (263)
123 3sb4_A Hypothetical leucine ri 99.6 7.9E-17 2.7E-21 175.7 5.3 219 233-481 100-327 (329)
124 3sb4_A Hypothetical leucine ri 99.6 4.7E-16 1.6E-20 169.5 8.0 102 617-720 225-327 (329)
125 2ell_A Acidic leucine-rich nuc 99.6 3.5E-15 1.2E-19 145.1 9.9 132 618-751 24-160 (168)
126 2wfh_A SLIT homolog 2 protein 99.6 6.8E-15 2.3E-19 146.2 11.9 112 715-828 32-143 (193)
127 2je0_A Acidic leucine-rich nuc 99.6 3.8E-15 1.3E-19 141.6 8.4 85 666-752 17-102 (149)
128 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.1E-20 143.0 6.5 130 688-820 15-149 (149)
129 2ell_A Acidic leucine-rich nuc 99.6 6.7E-15 2.3E-19 143.1 9.5 133 594-728 24-161 (168)
130 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 142.8 11.0 114 714-828 28-141 (177)
131 2wfh_A SLIT homolog 2 protein 99.5 4.5E-14 1.5E-18 140.2 13.7 129 621-753 13-141 (193)
132 4fdw_A Leucine rich hypothetic 99.5 1.7E-13 6E-18 152.1 20.0 265 450-750 112-382 (401)
133 2o6r_A Variable lymphocyte rec 99.5 4.8E-14 1.6E-18 138.3 13.4 132 621-755 10-141 (177)
134 4fs7_A Uncharacterized protein 99.5 1.4E-13 4.6E-18 154.1 18.8 122 589-718 271-392 (394)
135 4fdw_A Leucine rich hypothetic 99.5 2.9E-13 9.8E-18 150.4 18.5 245 452-725 136-381 (401)
136 4fs7_A Uncharacterized protein 99.5 3.3E-13 1.1E-17 150.9 17.9 237 542-816 157-393 (394)
137 1ds9_A Outer arm dynein; leuci 99.5 5.2E-16 1.8E-20 155.5 -6.6 151 666-824 18-185 (198)
138 1ds9_A Outer arm dynein; leuci 99.4 2.1E-15 7E-20 151.1 -4.7 136 591-731 15-157 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.4 2.3E-13 8E-18 133.2 8.5 82 667-751 43-126 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.4 1.9E-13 6.7E-18 133.7 7.8 133 614-751 15-153 (176)
141 3g39_A Variable lymphocyte rec 99.4 6.2E-13 2.1E-17 129.0 9.3 109 716-828 11-119 (170)
142 2r9u_A Variable lymphocyte rec 99.3 2.2E-12 7.6E-17 125.5 9.2 108 717-828 15-122 (174)
143 3g39_A Variable lymphocyte rec 99.3 5.3E-12 1.8E-16 122.4 11.3 108 644-754 11-118 (170)
144 2r9u_A Variable lymphocyte rec 99.3 1.1E-11 3.6E-16 120.6 12.2 105 645-752 15-119 (174)
145 4gt6_A Cell surface protein; l 99.3 1.6E-10 5.3E-15 129.1 22.8 106 613-724 283-388 (394)
146 4gt6_A Cell surface protein; l 99.3 1.5E-10 5.1E-15 129.3 22.1 109 396-507 56-168 (394)
147 2ifg_A High affinity nerve gro 99.2 2.6E-11 9E-16 133.1 8.2 105 720-828 14-120 (347)
148 3un9_A NLR family member X1; l 99.2 1.2E-12 4.1E-17 144.0 -3.7 114 714-828 126-256 (372)
149 3un9_A NLR family member X1; l 99.1 9.6E-13 3.3E-17 144.7 -5.4 187 617-824 71-283 (372)
150 2ifg_A High affinity nerve gro 99.1 2.7E-10 9.4E-15 124.9 9.8 101 623-726 13-115 (347)
151 4h09_A Hypothetical leucine ri 99.0 1.3E-08 4.5E-13 112.9 22.1 301 422-746 41-341 (379)
152 4h09_A Hypothetical leucine ri 99.0 2E-08 6.8E-13 111.5 22.8 318 373-739 40-357 (379)
153 2ra8_A Uncharacterized protein 98.8 6.3E-10 2.2E-14 121.0 0.4 205 65-293 106-341 (362)
154 2ra8_A Uncharacterized protein 98.7 4.8E-09 1.6E-13 114.0 2.6 139 660-802 166-322 (362)
155 3rw6_A Nuclear RNA export fact 98.5 3.5E-10 1.2E-14 116.2 -13.0 23 53-75 77-99 (267)
156 1io0_A Tropomodulin; LRR prote 98.3 2.1E-08 7.3E-13 98.2 -3.8 71 82-152 28-107 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.7E-07 5.9E-12 96.2 2.4 80 735-817 167-257 (267)
158 1io0_A Tropomodulin; LRR prote 98.2 3.1E-07 1.1E-11 89.8 0.8 118 686-824 32-164 (185)
159 3e4g_A ATP synthase subunit S, 97.8 3.9E-06 1.3E-10 79.6 0.3 35 114-148 61-95 (176)
160 3e4g_A ATP synthase subunit S, 97.8 8.6E-06 2.9E-10 77.2 2.5 84 186-269 61-150 (176)
161 3rfe_A Platelet glycoprotein I 96.7 0.0014 4.8E-08 59.1 5.3 59 768-828 13-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0014 4.7E-08 63.3 1.3 114 688-822 39-168 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.0 0.0018 6E-08 62.5 1.4 63 185-247 40-111 (197)
164 3rfe_A Platelet glycoprotein I 95.8 0.011 3.8E-07 53.1 6.0 57 694-752 12-69 (130)
165 2k1k_A Ephrin type-A receptor 71.0 0.78 2.7E-05 30.4 -0.2 14 868-881 12-25 (38)
166 2l2t_A Receptor tyrosine-prote 55.0 9.2 0.00032 26.1 2.7 11 887-897 26-36 (44)
167 2klu_A T-cell surface glycopro 54.8 6.1 0.00021 29.2 1.9 27 873-899 13-39 (70)
168 2lz0_A Uncharacterized protein 40.3 57 0.0019 27.0 6.1 13 637-649 15-27 (100)
169 2lz0_A Uncharacterized protein 36.6 31 0.0011 28.6 3.9 43 198-241 8-50 (100)
170 1afo_A Glycophorin A; integral 21.0 34 0.0012 22.3 1.0 7 872-878 15-21 (40)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-92 Score=867.82 Aligned_cols=739 Identities=32% Similarity=0.474 Sum_probs=533.4
Q ss_pred HhhcCChHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccceEecCCCCCEEEEECCCCCCccc---cccCccCCCCCcE
Q 036729 18 VALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGS---ISRDFLNLTSLET 94 (970)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~---~~~~l~~l~~L~~ 94 (970)
+++++.++|++||++||+++.||. .+++|..++|||+|+||+|+ .+||++|+|+++.+.|. +++++.++++|+.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 445567889999999999999987 89999888899999999998 68999999999999998 8889999999999
Q ss_pred EECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCc--CCCCCCCCcEEEccCccCCccCCccc-cCCcccchhhccc
Q 036729 95 LDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPP--EIGFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAY 171 (970)
Q Consensus 95 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~L~~n~~~~~~p~~l-~~l~~L~~L~L~~ 171 (970)
++++.+.+. .+|..++++++|++|+|++|.+.|.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|++++
T Consensus 82 l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 82 LFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred cCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 999988765 3567888899999999999988888887 78888888888888888777766554 5666666666666
Q ss_pred cccccCCCcc---ccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCcc
Q 036729 172 CQLNGSIPVE---IGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG 248 (970)
Q Consensus 172 ~~~~~~~p~~---l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 248 (970)
|++++..|.. ++++++|++|++++|.+++..+ . ..+++|++|++++|.+++
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------------~--~~l~~L~~L~Ls~n~l~~ 214 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------------------------V--SRCVNLEFLDVSSNNFST 214 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB------------------------C--TTCTTCCEEECCSSCCCS
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCC------------------------c--ccCCcCCEEECcCCcCCC
Confidence 6666555554 5556666666666665554332 1 455566666666666665
Q ss_pred ccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhc
Q 036729 249 SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCL 328 (970)
Q Consensus 249 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 328 (970)
.+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+..
T Consensus 215 ~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~ 291 (768)
T 3rgz_A 215 GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG 291 (768)
T ss_dssp CCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCT
T ss_pred CCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHh
Confidence 5554 666666666666666666666666666666666666666666655544 6677777777777777777766654
Q ss_pred CCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcc-cccccccccccCCcccccCCCCcCCCCcCCCCe
Q 036729 329 NNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRS-LDKLEELTDLLLNNNSFTGSFPPEIGNLSKLEN 407 (970)
Q Consensus 329 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 407 (970)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+.+++
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~---- 367 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS---- 367 (768)
T ss_dssp TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT----
T ss_pred hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh----
Confidence 3455555555555555555555555666666666666555444433 44445555555555554444444444443
Q ss_pred eecccccccccCCccccCCCCCCEEEcccccCCCcCCccccc--CCCCCEEeccccccCCcccccccCCCCccEEeeccc
Q 036729 408 LFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN--CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485 (970)
Q Consensus 408 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 485 (970)
++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..+++|+.|++++|
T Consensus 368 -------------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 368 -------------------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp -------------------TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred -------------------cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 04444444444444444444443 555666666666666666666666666666666666
Q ss_pred cCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCC
Q 036729 486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP 565 (970)
Q Consensus 486 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 565 (970)
.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~--------------------------------------- 469 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE--------------------------------------- 469 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC---------------------------------------
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce---------------------------------------
Confidence 66666666665655666666555555554444443333322
Q ss_pred CCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCccc
Q 036729 566 LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645 (970)
Q Consensus 566 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 645 (970)
.|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+.++++|+
T Consensus 470 --------~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 470 --------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp --------EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred --------EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 233333333344666777888899999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcccCCccccccccCccceEEcccCc-CcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCC
Q 036729 646 HLLLSNNELTGTIPFWLGSLQEIGELDLSSNN-FNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN 724 (970)
Q Consensus 646 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 724 (970)
+|++++|+++|.+|.++.....+..+++..+. +..................+ .+.+..+..+..++.++.++++.|
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL---EFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE---ECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred EEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc---ccccccchhhhccccccccccccc
Confidence 99999999999999988877666555443321 11000000000111100001 245566777888889999999999
Q ss_pred ccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccC
Q 036729 725 SLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP 804 (970)
Q Consensus 725 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p 804 (970)
.+.|.+|..+..+++|+.|||++|+++|.+|.+++.++.|+. |||++|.++|.||..++++++|++||||+|+++|.+|
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~-L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI-LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE-EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE-EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 999999999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred cccCCCCcCcEEecCCCcccccCC--ccccCCCCcccCCCCCCCCCCCCCCCCccCCCccc
Q 036729 805 ASLGKLTSLHVLNLSNNHLQGQLP--LTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKR 863 (970)
Q Consensus 805 ~~l~~l~~L~~l~ls~N~l~g~~p--~~~~~~~~~~~~~n~~lc~~~~~~c~~~~~~~~~~ 863 (970)
..+..+++|++||+|+|+++|.+| .+|.+++..+|.||+++||+|...|....+..+.+
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~ 758 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH 758 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC------
T ss_pred hHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCC
Confidence 999999999999999999999999 67889999999999999999988998665544443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-72 Score=689.94 Aligned_cols=633 Identities=32% Similarity=0.465 Sum_probs=511.9
Q ss_pred CEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCc--cccCCCCCcEeecCCCcCcCCCCcCC-CCCCCCcEE
Q 036729 67 HVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPS--ELGQLQNLRILLLYSNSFSGKIPPEI-GFLNKLQVL 143 (970)
Q Consensus 67 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L 143 (970)
+++.++++.+++.. ++..+..+++|++|||++|.+.|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|
T Consensus 78 ~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 78 GLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred cccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 34455555555432 447899999999999999999999998 99999999999999999999988876 889999999
Q ss_pred EccCccCCccCCcc---ccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCccccccccccc
Q 036729 144 RIGDNLLWGEIPPH---IGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNN 220 (970)
Q Consensus 144 ~L~~n~~~~~~p~~---l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n 220 (970)
++++|.+.+..|.. +.++++|++|++++|.+.+..|. +++++|++|++++|++++.+|. +.++++|++|++++|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 99999999888877 88999999999999999887664 8999999999999999998887 999999999999999
Q ss_pred ccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCC-CCccEEECcCCcCccccc
Q 036729 221 MLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKL-AQLEELDLSKNNLSGSIS 299 (970)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~ 299 (970)
.+++.+|..+..+++|++|++++|.+++.+|.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+++.+|
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred cCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 999999999999999999999999999888875 89999999999999999999988775 999999999999999999
Q ss_pred cccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCC-CCCEEeCCCCcCCCCCCccccc-
Q 036729 300 LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCS-SLQQLDLSDNSFKGELPRSLDK- 377 (970)
Q Consensus 300 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~l~~- 377 (970)
..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|++.+.+|..+..
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 99999999999999999999999988666799999999999999989999998887 9999999999999888888776
Q ss_pred -ccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEE
Q 036729 378 -LEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEI 456 (970)
Q Consensus 378 -l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 456 (970)
+++|+.|++++|.+++.+|..++++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 7889999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccc
Q 036729 457 DFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFK 536 (970)
Q Consensus 457 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 536 (970)
++++|.+++.+|..+..+++|++|++++|++++.+|.++..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCCCcEEEccccccccccC--CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCccc
Q 036729 537 GPLPPSLFQLKKLRIINFSHNKFSGSIY--PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEF 614 (970)
Q Consensus 537 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 614 (970)
|.+|..+.....+..+++..+.-..... ............ -.+.+..+..+..+..+..++++.|.+.|.+|..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE---EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccc---cccccccchhhhccccccccccccceecccCchhh
Confidence 9999888777665554433321000000 000000000000 01223344444445555555555555555555555
Q ss_pred ccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceE
Q 036729 615 GKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLK 694 (970)
Q Consensus 615 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 694 (970)
+.+++|++||+++|+++|.+|..++++++|+.|+|++|+++|.+|..++.+++|++|||++|+++|.+|..+..+++|++
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred EEccCCcCcccCCc
Q 036729 695 LSLRGNNLSGKIPP 708 (970)
Q Consensus 695 L~L~~N~l~~~~~~ 708 (970)
|++++|+++|.+|.
T Consensus 709 L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 709 IDLSNNNLSGPIPE 722 (768)
T ss_dssp EECCSSEEEEECCS
T ss_pred EECcCCcccccCCC
Confidence 55555555555554
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.7e-59 Score=565.94 Aligned_cols=586 Identities=25% Similarity=0.257 Sum_probs=294.4
Q ss_pred cEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhcccc
Q 036729 93 ETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC 172 (970)
Q Consensus 93 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~ 172 (970)
+.+|.++++++ .+|..+. +++++|+|++|.+.+..+..++++++|++|++++|.+.+..|..++++++|++|++++|
T Consensus 7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 45666666665 3454443 56666666666666544445666666666666666555554544555555555555544
Q ss_pred ccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCc
Q 036729 173 QLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPV 252 (970)
Q Consensus 173 ~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 252 (970)
+ +++..+..|.++++|++|++++|.+++..|..++.+++|++|++++|.+++..|.
T Consensus 84 ~------------------------l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 84 E------------------------LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp C------------------------CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred c------------------------cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence 4 4444444444555555555555555444445555555666666666666555555
Q ss_pred cccCCCCCCEEEccCccccccCCcccc--CCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhc--
Q 036729 253 ELSHLFNLRYLNLLGNIFDGEIPSELN--KLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCL-- 328 (970)
Q Consensus 253 ~l~~l~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-- 328 (970)
.+.++++|++|++++|.+++..+..++ .+++|++|++++|.+++..+..+..+++|+.|+++++.+.+.....++.
T Consensus 140 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l 219 (680)
T 1ziw_A 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219 (680)
T ss_dssp SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH
T ss_pred hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh
Confidence 566666666666666666655554443 3466777777777766666666666777777777666554322222210
Q ss_pred CCCCCcEEEccCCcCCCCCccccccCCC--CCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCC
Q 036729 329 NNSSLQQLILARNKLSGEFPLELLRCSS--LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLE 406 (970)
Q Consensus 329 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 406 (970)
..++|+.|++++|.+.+..+..+..++. |++|++++|++.+..|..+. .+++|+
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~------------------------~l~~L~ 275 (680)
T 1ziw_A 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA------------------------WLPQLE 275 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT------------------------TCTTCC
T ss_pred hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc------------------------Cccccc
Confidence 1244444444444444444444444322 55555555554444444444 444444
Q ss_pred eeecccccccccCCccccCCCCCCEEEcccccCCCc-----CC----cccccCCCCCEEeccccccCCcccccccCCCCc
Q 036729 407 NLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGS-----IP----RELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL 477 (970)
Q Consensus 407 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 477 (970)
+|++++|.+.+..|..+..+++|++|++++|...+. +| ..+..+++|++|++++|.+.+..+..|..+++|
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 355 (680)
T 1ziw_A 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355 (680)
T ss_dssp EEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTC
T ss_pred EeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCC
Confidence 444444444444444444444444444444332221 11 134445555555555555555555555555555
Q ss_pred cEEeeccccCCCC--CCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcc
Q 036729 478 VILQLRQNDLSGP--IPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFS 555 (970)
Q Consensus 478 ~~L~L~~n~l~~~--~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 555 (970)
++|++++|.+... .+..+..+ ..+.|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 356 ~~L~Ls~n~~~~~~l~~~~f~~~----------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 356 KYLSLSNSFTSLRTLTNETFVSL----------------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413 (680)
T ss_dssp CEEECTTCBSCCCEECTTTTGGG----------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cEEECCCCchhhhhcchhhhccc----------------------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence 5555555543211 11111111 01244444444444444444445555555555555
Q ss_pred ccccccccC--CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCcccc--CCCCcccccCCCCcEEEccCCcCc
Q 036729 556 HNKFSGSIY--PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLT--GNIPSEFGKLTELNFLDLSFNSFT 631 (970)
Q Consensus 556 ~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~n~l~ 631 (970)
+|.+++.++ .+.++++|++|++++|++++..+..+..+++|+.|++++|.+. +.+|..|..+++|++|++++|+++
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence 555544322 2334444444444444444444444555555555555555544 344555556666666666666666
Q ss_pred cCCcccCcCcCcccEEEccCCcccCCcc--------ccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCc
Q 036729 632 GQIAPQLSKCAKLAHLLLSNNELTGTIP--------FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLS 703 (970)
Q Consensus 632 ~~~~~~l~~~~~L~~L~L~~n~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 703 (970)
+..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|+++...+..|.++++|++|++++|+++
T Consensus 494 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence 5555555556666666666665553311 12344445555555555554333333444445555555555444
Q ss_pred ccCCcccccccccceeccCCCccccccchhhh-cccCCcEEECcccccc
Q 036729 704 GKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQ-QCKKLYELRLSENFFT 751 (970)
Q Consensus 704 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~ 751 (970)
+..+..|..+++|+.|++++|++++..+..+. .+++|+.|++++|++.
T Consensus 574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 43333444444444444444444444444443 3444444444444444
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-59 Score=569.10 Aligned_cols=596 Identities=21% Similarity=0.225 Sum_probs=360.3
Q ss_pred eEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCc
Q 036729 189 TSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN 268 (970)
Q Consensus 189 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 268 (970)
+.++.++++++.. |..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQV-PDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSC-CSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCcccc-ccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 4577777777643 33332 56777777777777666666777777777777777776666666666777777777777
Q ss_pred cccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCc
Q 036729 269 IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFP 348 (970)
Q Consensus 269 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 348 (970)
.+++..+..|+.+++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..+
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS-CCTTCCEEECCSSCCCCBCH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhc-ccccCCEEEccCCcccccCH
Confidence 66655555566677777777777766666666666666666666666666554443332 24455555555555444443
Q ss_pred cccc--cCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccc---
Q 036729 349 LELL--RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEI--- 423 (970)
Q Consensus 349 ~~~~--~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--- 423 (970)
..+. .+++|++|++++|.+.+.. |..+..+++|+.+++.++.+.+.....+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~------------------------~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 218 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFS------------------------PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBC------------------------TTGGGGSSEECEEECTTCCCHHHHHHHHHHH
T ss_pred HHhhccccccccEEECCCCcccccC------------------------hhhhhhhhhhhhhhccccccChhhHHHHHHH
Confidence 3322 2344444444444444444 4444444445555544444332111111
Q ss_pred cCCCCCCEEEcccccCCCcCCcccccCCC--CCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccc
Q 036729 424 GKLQTLSAIYLYDNQMSGSIPRELTNCSG--LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRL 501 (970)
Q Consensus 424 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 501 (970)
...++|+.|++++|.+.+..|..+.+++. |++|++++|.+++..|..|..+++|+.|++++|.+.+..|..+..+++|
T Consensus 219 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (680)
T 1ziw_A 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298 (680)
T ss_dssp HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred hhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence 02245555555555555555555555433 6666666666655555555566666666666666665555556666666
Q ss_pred cEEeccCCcccCc-----cC----cchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcc
Q 036729 502 QQIALADNKLSGS-----VP----LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSL 572 (970)
Q Consensus 502 ~~L~Ls~n~l~~~-----~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L 572 (970)
+.|++++|...+. +| ..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+......
T Consensus 299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~------- 371 (680)
T 1ziw_A 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT------- 371 (680)
T ss_dssp CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC-------
T ss_pred cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcc-------
Confidence 6666655443321 11 2455566666666666666666666666666666666666654321110
Q ss_pred cEEECCCCCCCCCCCccccc--CcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCc-ccCcCcCcccEEEc
Q 036729 573 TALDLTNNSFSGPIPSELAM--SRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA-PQLSKCAKLAHLLL 649 (970)
Q Consensus 573 ~~L~l~~n~l~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~L 649 (970)
...+.. .++|+.|++++|++++..|..|..+++|++|++++|.+++.+| ..+.++++|++|++
T Consensus 372 --------------~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 372 --------------NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp --------------TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred --------------hhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 011111 1345555555555555555555555555555555555554433 34555555555555
Q ss_pred cCCcccCCccccccccCccceEEcccCcCc--CCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccc
Q 036729 650 SNNELTGTIPFWLGSLQEIGELDLSSNNFN--GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLS 727 (970)
Q Consensus 650 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 727 (970)
++|++++..+..+..+++|+.|++++|.+. +.+|..|..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 555555555555555555555555555554 345555566666666666666666555555566666666666666655
Q ss_pred ccc--------chhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcC
Q 036729 728 GNI--------PSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQL 799 (970)
Q Consensus 728 ~~~--------p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l 799 (970)
+.. +..+..+++|+.|+|++|+++...+..+.+++.|+. |++++|.+++..+..|.++++|+.|++++|++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~-L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI-IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce-eECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 432 224677888888999988888444456888888888 99999999977777789999999999999999
Q ss_pred ccccCcccC-CCCcCcEEecCCCcccccCC--ccccCC
Q 036729 800 QGQVPASLG-KLTSLHVLNLSNNHLQGQLP--LTFSGF 834 (970)
Q Consensus 800 ~~~~p~~l~-~l~~L~~l~ls~N~l~g~~p--~~~~~~ 834 (970)
++..|..+. .+++|+.+++++|++.|.|+ .+|..+
T Consensus 597 ~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp CBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred CccChhHhcccccccCEEEccCCCcccCCccHHHHHHH
Confidence 998888887 78999999999999999998 344443
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-55 Score=541.56 Aligned_cols=532 Identities=23% Similarity=0.224 Sum_probs=351.3
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCcccc-ccccCCCCCccEEEccCC
Q 036729 238 ILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSI-SLLNTQLKNLETLVLSDN 316 (970)
Q Consensus 238 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n 316 (970)
..+.++++++ .+|. -.++|++|+|++|.+++..|..|+++++|++|++++|...+.+ |..|.++++|++|++++|
T Consensus 8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 3455555555 3343 3355666666666666555555555555555555555433322 334444444444444444
Q ss_pred cccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcc--cccccccccccCCcccccCC
Q 036729 317 AFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRS--LDKLEELTDLLLNNNSFTGS 394 (970)
Q Consensus 317 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~ 394 (970)
.+.+..|..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++.
T Consensus 84 -------------------------~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 84 -------------------------KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp -------------------------CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred -------------------------cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 444444455557777777788777777655544 67777777777777777655
Q ss_pred CC-cCCCCcCCCCeeecccccccccCCccccCC--CCCCEEEcccccCCCcCCcccccCCC------CCEEeccccccCC
Q 036729 395 FP-PEIGNLSKLENLFLFDNMITGKIPVEIGKL--QTLSAIYLYDNQMSGSIPRELTNCSG------LTEIDFFGNHFSG 465 (970)
Q Consensus 395 ~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~ 465 (970)
.+ ..|+++++|++|++++|.+++..+..+..+ ++|+.|+++.|.+.+..|..+..+++ |++|++++|.+++
T Consensus 139 ~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence 44 356777777777777777776666666655 67777777777777666666555554 6677777766666
Q ss_pred cccccccCC---CCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcC--CCCceEEccccccccCCC
Q 036729 466 SIPETMGKL---KNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFL--SELYLITLYNNSFKGPLP 540 (970)
Q Consensus 466 ~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~ 540 (970)
..+..+... .+++.+.++.+.... ....+.+.+..+..|.++ ++++.|++++|.+.+..+
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~---------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGA---------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBC---------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred hHHHHHHhhcCcccccceecccccccc---------------cccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 555554432 345555554322211 011222333333344433 466667777666666666
Q ss_pred ccccCCCCCcEEEccccccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCC
Q 036729 541 PSLFQLKKLRIINFSHNKFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTE 619 (970)
Q Consensus 541 ~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 619 (970)
..+..+++|+.|++++|.+++..+ .+.++++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..|..+++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 666667777777777777665544 4666677777777777777666777777777777777777777666667777777
Q ss_pred CcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCC-CCCCCCCcceEEEcc
Q 036729 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVP-AEIGNCSKLLKLSLR 698 (970)
Q Consensus 620 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~ 698 (970)
|++|++++|.+++. ..+++|+.|++++|+++. +|.. ..+++.|++++|++.+... ..+..+++|++|+++
T Consensus 364 L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 364 LQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434 (844)
T ss_dssp CCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEE
T ss_pred CCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCC
Confidence 77777777777642 226677777777777763 3432 4567777777777775422 224467777888888
Q ss_pred CCcCcccCCc-ccccccccceeccCCCccc-----cccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCC
Q 036729 699 GNNLSGKIPP-EIGNLTALNVLNLQRNSLS-----GNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSK 772 (970)
Q Consensus 699 ~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~ 772 (970)
+|++++..+. .+..+++|+.|++++|.++ +..+..|..+++|+.|+|++|++++.+|..+..++.|+. |+|++
T Consensus 435 ~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~Ls~ 513 (844)
T 3j0a_A 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG-LSLNS 513 (844)
T ss_dssp SCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE-EEEES
T ss_pred CCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe-eECCC
Confidence 8877755443 3455677888888888776 344556778888888888888888888888888888887 88888
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 773 NNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 773 N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
|.+++..|..+. ++|+.|||++|++++.+|..+. +|+.+++++|++.|.|+
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 888877777666 8999999999999999998765 78899999999999998
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-54 Score=516.20 Aligned_cols=533 Identities=20% Similarity=0.156 Sum_probs=415.2
Q ss_pred EEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCC
Q 036729 286 ELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDN 365 (970)
Q Consensus 286 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 365 (970)
.++.++..++. +|..+. +.+++|++++|.+++..|..+ ..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 16 ~~~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTF-SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCCSS-CCTTSC--TTCCEEECTTCCCSEECTTTS-TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEECCCCCccc-CcCCCC--CcCcEEEccCCccCcCChhHh-ccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 56666665553 333222 356777777777765444433 34667777777777776666666677777777777777
Q ss_pred cCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCc
Q 036729 366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPR 445 (970)
Q Consensus 366 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 445 (970)
++.+..|..+..+++|++|++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 77666666666777777777777776655455666677777777777766653333334466777777777766666666
Q ss_pred ccccCCCCC--EEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcc-----cCccCcc
Q 036729 446 ELTNCSGLT--EIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKL-----SGSVPLT 518 (970)
Q Consensus 446 ~l~~l~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l-----~~~~~~~ 518 (970)
.+..+++|+ .|++++|.+.+..|..+.. .+|+.|++++|. ..+..+..+..+....+....+ ....+..
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhH
Confidence 666666666 6666777666655554433 466666666664 1222333333333222222111 1222334
Q ss_pred hhcCC--CCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCC
Q 036729 519 FRFLS--ELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNL 596 (970)
Q Consensus 519 ~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 596 (970)
|..+. +++.+++++|.+++..+..+..+++|+.|++++|.++.....+..+++|++|++++|.+++..|..+..+++|
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 44443 7899999999999988888999999999999999998655578889999999999999998888899999999
Q ss_pred CceeccCccccCCCCc-ccccCCCCcEEEccCCcCccCC--cccCcCcCcccEEEccCCcccCCccccccccCccceEEc
Q 036729 597 SRLRLAHNHLTGNIPS-EFGKLTELNFLDLSFNSFTGQI--APQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDL 673 (970)
Q Consensus 597 ~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 673 (970)
++|++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..+++|++|++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 9999999999877765 4899999999999999998776 778999999999999999999988999999999999999
Q ss_pred ccCcCcCCCCC-CCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccc---cchhhhcccCCcEEECcccc
Q 036729 674 SSNNFNGTVPA-EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN---IPSTIQQCKKLYELRLSENF 749 (970)
Q Consensus 674 s~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~Ls~N~ 749 (970)
++|++.+..|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|+.|++++|+
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 99999987665 488999999999999999999999999999999999999999873 33678999999999999999
Q ss_pred ccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 750 FTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 750 l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+++..|..++.++.|+. |++++|.+++.+|..+++++.| .|++++|++++..|..+..+++|+++++++|++.|.++
T Consensus 488 l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNH-VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCEECTTTTTTCTTCCE-EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCccChhhhccccCCCE-EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999998 9999999999999999999999 99999999999999999999999999999999999998
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-53 Score=506.82 Aligned_cols=537 Identities=21% Similarity=0.226 Sum_probs=291.2
Q ss_pred EECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccC
Q 036729 71 LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLL 150 (970)
Q Consensus 71 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~ 150 (970)
++.++.+++ .+|..+. +.+++|||++|.+++..|..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.+
T Consensus 17 ~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 334444444 3444443 3688999999988877788888888888888888888877788888888888888888888
Q ss_pred CccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccc
Q 036729 151 WGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSI 230 (970)
Q Consensus 151 ~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 230 (970)
.+..|..++++++|++|++++|++++..+..++++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh
Confidence 77777777777777777777777765555666666677777776666665433333335555555555555544444444
Q ss_pred cCCCCCc--EEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCc
Q 036729 231 VLLKSLQ--ILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNL 308 (970)
Q Consensus 231 ~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 308 (970)
+.+++|+ .|++++|.+++..|. .+.. .+|++|++++|. ..+..+..+.++
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~------------------------~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~ 225 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPG------------------------AFDS-AVFQSLNFGGTQ---NLLVIFKGLKNS 225 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTT------------------------TTTT-CEEEEEECTTCS---CHHHHHHHTTTC
T ss_pred hhhcccceeEEecCCCccCccChh------------------------Hhhh-ccccccccCCch---hHHHHhhhcccc
Confidence 4444444 444444444443333 2222 234444444432 111111222222
Q ss_pred cEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCC--CCCEEeCCCCcCCCCCCcccccccccccccC
Q 036729 309 ETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCS--SLQQLDLSDNSFKGELPRSLDKLEELTDLLL 386 (970)
Q Consensus 309 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 386 (970)
+...+....+.+. .. ....+..+..+. +|+.|++++|.+.+..+..|..+++|+.|++
T Consensus 226 ~l~~l~~~~~~~~------------~~--------~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 285 (606)
T 3t6q_A 226 TIQSLWLGTFEDM------------DD--------EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285 (606)
T ss_dssp EEEEEECCCCTTS------------CC--------CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEEC
T ss_pred chhheechhhccc------------cc--------cccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEec
Confidence 2111111111000 00 000011111111 4555555555555555555555555555555
Q ss_pred CcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCc-ccccCCCCCEEeccccccCC
Q 036729 387 NNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPR-ELTNCSGLTEIDFFGNHFSG 465 (970)
Q Consensus 387 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~ 465 (970)
++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+
T Consensus 286 ~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp TTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred cCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 555555 4555556666666666666666655555556666666666666665544443 25556666666666666554
Q ss_pred cc--cccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCc-chhcCCCCceEEccccccccCCCcc
Q 036729 466 SI--PETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL-TFRFLSELYLITLYNNSFKGPLPPS 542 (970)
Q Consensus 466 ~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~ 542 (970)
.. +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence 43 44455555555555555555555555555555555555555555544332 2444444444444444444444444
Q ss_pred ccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcE
Q 036729 543 LFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNF 622 (970)
Q Consensus 543 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 622 (970)
+..+++|+.|++++|.+++.. + ..+..+..+++|++
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~----------------------~----------------------~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGN----------------------I----------------------QKTNSLQTLGRLEI 480 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGE----------------------E----------------------CSSCGGGGCTTCCE
T ss_pred HhCCCCCCEEECCCCCCCccc----------------------c----------------------ccchhhccCCCccE
Confidence 444444444444433332210 0 11233445555555
Q ss_pred EEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcC
Q 036729 623 LDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNL 702 (970)
Q Consensus 623 L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 702 (970)
|++++|.+++..|..+..+++|++|++++|++++..|.++..++.| +|++++|++++..|..+..+++|++|++++|++
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 5555555555555555555555555555555555555555555555 555555555555555555555666666666655
Q ss_pred cc
Q 036729 703 SG 704 (970)
Q Consensus 703 ~~ 704 (970)
.+
T Consensus 560 ~c 561 (606)
T 3t6q_A 560 DC 561 (606)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.4e-53 Score=507.51 Aligned_cols=530 Identities=21% Similarity=0.177 Sum_probs=451.4
Q ss_pred ccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCC
Q 036729 284 LEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLS 363 (970)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 363 (970)
-++++.+++.++.... .+. +++++|++++|.+++..+.. +..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 13 ~~~~~c~~~~l~~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPD-DIP--SSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSSCCT-TSC--TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcccCCC-CCC--CCcCEEECCCCCcCEeChhh-ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 3578888888876543 232 78999999999988555444 4458899999999999988888888899999999999
Q ss_pred CCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccc-cCCccccCCCCCCEEEcccccCCCc
Q 036729 364 DNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITG-KIPVEIGKLQTLSAIYLYDNQMSGS 442 (970)
Q Consensus 364 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~ 442 (970)
+|.+++..|..|+.+++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999988888899999999999999999987777788999999999999999876 5688899999999999999999888
Q ss_pred CCcccccCCCCC----EEeccccccCCcccccccCCCCccEEeeccccCC-CCCCCcccccccccEEeccCCcccC----
Q 036729 443 IPRELTNCSGLT----EIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS-GPIPASLGYCKRLQQIALADNKLSG---- 513 (970)
Q Consensus 443 ~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~Ls~n~l~~---- 513 (970)
.+..+..+++|+ ++++++|.+++..+..+... +|+.|++++|.++ +..|..+..++.++.+++..+.+.+
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 787777766554 79999999887666666554 8999999999886 4566678888888888876554432
Q ss_pred --ccCcchhcCC--CCceEEc-cccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCc
Q 036729 514 --SVPLTFRFLS--ELYLITL-YNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPS 588 (970)
Q Consensus 514 --~~~~~~~~l~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 588 (970)
..+..+..+. .++.+++ ..+.+.+.+|. +..+++|+.+++++|.+.. ++.+..+++|+.|++++|.+ +.+|
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l-~~lp- 323 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQL-KQFP- 323 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCC-SSCC-
T ss_pred cccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hhhccccccCCEEEcccccC-cccc-
Confidence 1222233333 3455666 67778887777 8889999999999999865 44888899999999999999 6677
Q ss_pred ccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccC--CcccCcCcCcccEEEccCCcccCCccccccccC
Q 036729 589 ELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ--IAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQ 666 (970)
Q Consensus 589 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 666 (970)
.+ .+++|+.|++++|...+.. .+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++ +|..+..++
T Consensus 324 ~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~ 399 (606)
T 3vq2_A 324 TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE 399 (606)
T ss_dssp CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCT
T ss_pred cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCC
Confidence 45 8999999999999665544 677999999999999999876 47788999999999999999886 568899999
Q ss_pred ccceEEcccCcCcCCCC-CCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCcccc-ccchhhhcccCCcEEE
Q 036729 667 EIGELDLSSNNFNGTVP-AEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG-NIPSTIQQCKKLYELR 744 (970)
Q Consensus 667 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~ 744 (970)
+|++|++++|++.+..| ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|+.|+
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 99999999999999888 689999999999999999999999999999999999999999998 4788999999999999
Q ss_pred CccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC-cCcEEecCCCcc
Q 036729 745 LSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT-SLHVLNLSNNHL 823 (970)
Q Consensus 745 Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~-~L~~l~ls~N~l 823 (970)
+++|++++.+|..+..++.|+. |++++|.+++.+|..++++++|++||+++|+++ .+|..+..++ +|+++++++|++
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQL-LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCE-EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred CCCCcCCccChhhhcccccCCE-EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence 9999999999999999999998 999999999999999999999999999999999 6777798887 699999999999
Q ss_pred cccCC
Q 036729 824 QGQLP 828 (970)
Q Consensus 824 ~g~~p 828 (970)
.|.++
T Consensus 558 ~c~c~ 562 (606)
T 3vq2_A 558 ACICE 562 (606)
T ss_dssp CCSST
T ss_pred ccCCc
Confidence 99999
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.2e-54 Score=513.01 Aligned_cols=474 Identities=22% Similarity=0.280 Sum_probs=257.7
Q ss_pred ChHHHHHHHHHHhhCCCCC--------CCCCCCCCCCCCCCc---cceEecCCCCCEEEEECCCCCCccccccCccCCCC
Q 036729 23 ISTDSFWLLRIKQELVDPT--------GILENWSARAHMCSW---HGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTS 91 (970)
Q Consensus 23 ~~~~~~~l~~~~~~~~~~~--------~~~~~w~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~ 91 (970)
...|+.||.++++++.++. ...++|...++||.| .||+|+. .+||++|+|++++++|.+|++++++++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCcc
Confidence 3468999999999986532 133479888999999 9999985 489999999999999999999999999
Q ss_pred CcEEECCCCCC------CC------CCCccccCCCCCcEeecCCCcCcCCCCcCCCC-CCCCcEEEcc------------
Q 036729 92 LETLDLSSNSL------TG------LIPSELGQLQNLRILLLYSNSFSGKIPPEIGF-LNKLQVLRIG------------ 146 (970)
Q Consensus 92 L~~L~Ls~n~~------~~------~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~-l~~L~~L~L~------------ 146 (970)
|++|||++|.+ .+ .+|... +.+|| ++++++.+.+.+|..+.. +..+..+++.
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred ceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999976 33 445444 56677 777777777776665552 1111112221
Q ss_pred --------CccCCccCCccccCCcccchhhccccccccC-----------------CCcccc--CCceeeEEEcCCCcCC
Q 036729 147 --------DNLLWGEIPPHIGNLTELRELAIAYCQLNGS-----------------IPVEIG--NLKHLTSLDLQMNKLS 199 (970)
Q Consensus 147 --------~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~-----------------~p~~l~--~l~~L~~L~Ls~n~i~ 199 (970)
.|.+++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|++.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 233444 444455555555555555554443 444444 5555555555555555
Q ss_pred CCCcccccCCcccccccccccc-cCC-CCcccccCC------CCCcEEEccCCcCccccCc--cccCCCCCCEEEccCcc
Q 036729 200 GLIPEAIHGCEELQKFAASNNM-LEG-TIPSSIVLL------KSLQILNLANNSLSGSIPV--ELSHLFNLRYLNLLGNI 269 (970)
Q Consensus 200 ~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~ 269 (970)
+.+|..|.++++|++|++++|. +++ .+|..++.+ ++|++|++++|+++ .+|. .++++++|++|++++|.
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence 4445445555555555555554 444 444444443 45555555555544 4444 44455555555555555
Q ss_pred ccccCCccccCCCCccEEECcCCcCccccccccCCCCC-ccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCc
Q 036729 270 FDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKN-LETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFP 348 (970)
Q Consensus 270 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 348 (970)
+.|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|.
T Consensus 342 l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~------------------------ 394 (636)
T 4eco_A 342 LEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN------------------------ 394 (636)
T ss_dssp CEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS------------------------
T ss_pred Cccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch------------------------
Confidence 544444 4444455555555555444 33444444444 555555554444 3443
Q ss_pred cccccCC--CCCEEeCCCCcCCCCCCcccc-------cccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccC
Q 036729 349 LELLRCS--SLQQLDLSDNSFKGELPRSLD-------KLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKI 419 (970)
Q Consensus 349 ~~~~~~~--~L~~L~Ls~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 419 (970)
.+..++ +|++|++++|.+.+..|..+. .+++|+.|++++|.++...+..+..+++|++|++++|.++ .+
T Consensus 395 -~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i 472 (636)
T 4eco_A 395 -IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI 472 (636)
T ss_dssp -CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred -hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence 332222 444444444444444444443 3344444444444444211112233444444444444444 23
Q ss_pred CccccC--------CCCCCEEEcccccCCCcCCcccc--cCCCCCEEeccccccCCcccccccCCCCccEEee------c
Q 036729 420 PVEIGK--------LQTLSAIYLYDNQMSGSIPRELT--NCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQL------R 483 (970)
Q Consensus 420 ~~~~~~--------l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L------~ 483 (970)
|..... +++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|+.|++ +
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 322111 114555555555554 3444443 45555555555555554 4444555555555555 3
Q ss_pred cccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccc
Q 036729 484 QNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFK 536 (970)
Q Consensus 484 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 536 (970)
+|.+.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+.|++++|++.
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 4555555666666666666666666666 44444433 56666666666554
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.5e-52 Score=495.84 Aligned_cols=519 Identities=21% Similarity=0.180 Sum_probs=342.0
Q ss_pred CCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEE
Q 036729 258 FNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLI 337 (970)
Q Consensus 258 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 337 (970)
+++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+. .+++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST-TCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC-CcccCCEEE
Confidence 3444444444444444444444444444444444444444444444444444444444444433333222 233333334
Q ss_pred ccCCcCCCCCccccccCCCCCEEeCCCCcCCC-CCCcccccccccccccCCcccccCCCCcCCCCcCCCC----eeeccc
Q 036729 338 LARNKLSGEFPLELLRCSSLQQLDLSDNSFKG-ELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLE----NLFLFD 412 (970)
Q Consensus 338 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~ 412 (970)
+++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+..++.+.+|+ +|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 44444433444445567777777777777765 4566666666666666666666655555555555443 566666
Q ss_pred ccccccCCccccCCCCCCEEEcccccCC-CcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCC
Q 036729 413 NMITGKIPVEIGKLQTLSAIYLYDNQMS-GSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPI 491 (970)
Q Consensus 413 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 491 (970)
|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+... +. .+....
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--------l~-------~~~~~~ 254 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN--------LE-------IFEPSI 254 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC--------CS-------CCCGGG
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc--------cc-------ccChHH
Confidence 66654433333322 5555555555554 2334445555555555544333221100 00 000001
Q ss_pred CCcccccccccEEec-cCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCC
Q 036729 492 PASLGYCKRLQQIAL-ADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSN 570 (970)
Q Consensus 492 ~~~l~~~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 570 (970)
+..+..+ .++.+++ ..+.+.+..|. +..+++|+.+++++|.+.. +| .+..+++|+.|++++|.+ +.++.+ .++
T Consensus 255 ~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~ 328 (606)
T 3vq2_A 255 MEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLP 328 (606)
T ss_dssp GTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCC-CCS
T ss_pred hhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccC-CCC
Confidence 1111111 3444555 45555555555 6666666666666666643 23 566667777777777777 455555 677
Q ss_pred cccEEECCCCCCCCCCCcccccCcCCCceeccCccccCC--CCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEE
Q 036729 571 SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN--IPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLL 648 (970)
Q Consensus 571 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~ 648 (970)
+|+.|++++|...+.. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++ +|..+..+++|++|+
T Consensus 329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLD 405 (606)
T ss_dssp SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEE
T ss_pred ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeE
Confidence 7777777777544333 456778888888888888765 47788888999999999998886 457888899999999
Q ss_pred ccCCcccCCcc-ccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcc-cCCcccccccccceeccCCCcc
Q 036729 649 LSNNELTGTIP-FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG-KIPPEIGNLTALNVLNLQRNSL 726 (970)
Q Consensus 649 L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l 726 (970)
+++|++.+..| ..+..+++|++|++++|++.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 99999988877 678889999999999999998888889999999999999999987 4788889999999999999999
Q ss_pred ccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCC-CCCEEeCCCCcCccccC
Q 036729 727 SGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL-KLERLNISYNQLQGQVP 804 (970)
Q Consensus 727 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~-~L~~L~ls~N~l~~~~p 804 (970)
++..|..+..+++|+.|++++|++++.+|..+..++.|+. ||+++|.++ .+|..+..++ +|++|++++|.+.+..+
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST-LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE-EECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE-EECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9988889999999999999999999988999999999998 999999998 6777788887 59999999999987554
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-52 Score=507.72 Aligned_cols=479 Identities=21% Similarity=0.230 Sum_probs=297.8
Q ss_pred CChHHHHHHHHHHhhCCCCCCCCCCCCCCC-----CC--CCc------------cceEecCCCCCEEEEECCCCCCcccc
Q 036729 22 GISTDSFWLLRIKQELVDPTGILENWSARA-----HM--CSW------------HGVTCSDDQKHVVGLNLSSSGLSGSI 82 (970)
Q Consensus 22 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~~~~ 82 (970)
+..+|+.||++||+++.+| +|.... +| |.| .||+|+. .+||+.|+|++++++|.+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEE
T ss_pred cchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcC
Confidence 3457999999999999876 685433 55 999 9999985 689999999999999999
Q ss_pred ccCccCCCCCcEEEC-CCCCCCCCCCccc---------------------------------------------------
Q 036729 83 SRDFLNLTSLETLDL-SSNSLTGLIPSEL--------------------------------------------------- 110 (970)
Q Consensus 83 ~~~l~~l~~L~~L~L-s~n~~~~~~p~~l--------------------------------------------------- 110 (970)
|++|+++++|++||| ++|.++|..|...
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 8887766533211
Q ss_pred cCCCCCcEeecCC--CcCcCCCCcCCCCCCCCcEEEccCccCCc-----------------cCCcccc--CCcccchhhc
Q 036729 111 GQLQNLRILLLYS--NSFSGKIPPEIGFLNKLQVLRIGDNLLWG-----------------EIPPHIG--NLTELRELAI 169 (970)
Q Consensus 111 ~~l~~L~~L~Ls~--n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-----------------~~p~~l~--~l~~L~~L~L 169 (970)
.....++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+|..++ ++++|++|+|
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred ccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 1112233333333 66666 77777777777777777777776 2666655 6666666666
Q ss_pred cccccccCCCccccCCceeeEEEcCCCc-CCC-CCcccccCCc-------ccccccccccccCCCCcc--cccCCCCCcE
Q 036729 170 AYCQLNGSIPVEIGNLKHLTSLDLQMNK-LSG-LIPEAIHGCE-------ELQKFAASNNMLEGTIPS--SIVLLKSLQI 238 (970)
Q Consensus 170 ~~~~~~~~~p~~l~~l~~L~~L~Ls~n~-i~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~--~l~~l~~L~~ 238 (970)
++|.+.+.+|..++++++|++|++++|+ +++ .+|..+.+++ +|++|++++|.++ .+|. .++.+++|+.
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL 577 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE
Confidence 6666666666666666666666666665 665 5555444443 6666666666666 5555 5666666666
Q ss_pred EEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCC-ccEEECcCCcCccccccccCCCCC--ccEEEccC
Q 036729 239 LNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQ-LEELDLSKNNLSGSISLLNTQLKN--LETLVLSD 315 (970)
Q Consensus 239 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~ 315 (970)
|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++
T Consensus 578 L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 578 LDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp EECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCS
T ss_pred EECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcC
Confidence 666666665 555 5566666666666666665 55555666665 666666666655 44444444432 66666666
Q ss_pred CcccCCCchhhh----cCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccc
Q 036729 316 NAFTGSIPIKFC----LNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391 (970)
Q Consensus 316 n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 391 (970)
|.+.+.+|...+ ...++|+.|++++|.+....+..+..+++|+.|+|++|++. .+|..+....
T Consensus 654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~------------ 720 (876)
T 4ecn_A 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK------------ 720 (876)
T ss_dssp SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT------------
T ss_pred CcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc------------
Confidence 666554442211 01234555555555554222222234455555555555444 2222211100
Q ss_pred cCCCCcCCCCcCCCCeeecccccccccCCcccc--CCCCCCEEEcccccCCCcCCcccccCCCCCEEeccc------ccc
Q 036729 392 TGSFPPEIGNLSKLENLFLFDNMITGKIPVEIG--KLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFG------NHF 463 (970)
Q Consensus 392 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~------n~l 463 (970)
+..+.++++|+.|++++|.++ .+|..+. .+++|+.|++++|.+++ +|..+.++++|+.|++++ |.+
T Consensus 721 ----~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 721 ----DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp ----TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred ----cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 001123346777777777766 5666665 67777777777777766 566666777777777755 666
Q ss_pred CCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccc
Q 036729 464 SGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNS 534 (970)
Q Consensus 464 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 534 (970)
.+.+|..+..+++|+.|++++|.+ +.+|..+. ++|+.|++++|++....+..+.....+..+.+..|.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 777777777777777777777777 56666544 577777777777766555555443334444444443
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.7e-51 Score=501.82 Aligned_cols=532 Identities=21% Similarity=0.187 Sum_probs=323.8
Q ss_pred EEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCcccc-CccccCCCCCCEEEccCc
Q 036729 190 SLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI-PVELSHLFNLRYLNLLGN 268 (970)
Q Consensus 190 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n 268 (970)
..|.++++++.... -.++|++|++++|.+++..|..+..+++|++|+|++|...+.+ |..|.++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 56667777765532 3456777777777777666677777777777777777554444 556677777777777777
Q ss_pred cccccCCccccCCCCccEEECcCCcCccccccc--cCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCC
Q 036729 269 IFDGEIPSELNKLAQLEELDLSKNNLSGSISLL--NTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGE 346 (970)
Q Consensus 269 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 346 (970)
.+.+..|.+|+++++|++|+|++|.+++..+.. +..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 777666777777777777777777766644433 666667777777766666554433344455555555555555555
Q ss_pred CccccccC--CCCCEEeCCCCcCCCCCCcccccccc------cccccCCcccccCCCCcCCCCc---CCCCeeecccccc
Q 036729 347 FPLELLRC--SSLQQLDLSDNSFKGELPRSLDKLEE------LTDLLLNNNSFTGSFPPEIGNL---SKLENLFLFDNMI 415 (970)
Q Consensus 347 ~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l 415 (970)
.+..+..+ ++|+.|+++.|.+.+..|..+..+.+ |+.|++++|.+++..+..+... ++++.+.+..+..
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 55555544 55555555555555554444443333 4445555544444443333221 2333333332211
Q ss_pred cccCCccccCCCCCCEEEcccccCCCcCCcccccC--CCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCC
Q 036729 416 TGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC--SGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPA 493 (970)
Q Consensus 416 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 493 (970)
... +..+.+.+.....+.++ ++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..|.
T Consensus 244 ~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 244 GAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp BCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred ccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 100 01122222223333333 5677777777777776677777777777777777777777777
Q ss_pred cccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCccc
Q 036729 494 SLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLT 573 (970)
Q Consensus 494 ~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~ 573 (970)
.|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. ..+++|+
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~L~ 384 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI----HFIPSIP 384 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC----SSCCSCS
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc----cCCCCcc
Confidence 777777777777777777777777777777777777777777766666677777777777777776532 2255667
Q ss_pred EEECCCCCCCCCCCcccccCcCCCceeccCccccCCCC-cccccCCCCcEEEccCCcCccCCcc-cCcCcCcccEEEccC
Q 036729 574 ALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP-SEFGKLTELNFLDLSFNSFTGQIAP-QLSKCAKLAHLLLSN 651 (970)
Q Consensus 574 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~~~~L~~L~L~~ 651 (970)
.|++++|+++. +|.. ..+++.+++++|++++... ..+..+++|++|++++|++++..+. .+..+++|+.|++++
T Consensus 385 ~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~ 460 (844)
T 3j0a_A 385 DIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460 (844)
T ss_dssp EEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEES
T ss_pred hhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCC
Confidence 77777776663 2322 3456667777776664321 2244667777777777777654332 244566677777777
Q ss_pred Cccc-----CCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCcc
Q 036729 652 NELT-----GTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSL 726 (970)
Q Consensus 652 n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l 726 (970)
|.++ +..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..+. ++|+.|++++|++
T Consensus 461 N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL 538 (844)
T ss_dssp CCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECC
T ss_pred CccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcC
Confidence 7665 33344556666666666666666666666666666666666666666655555444 5666666666666
Q ss_pred ccccchhhhcccCCcEEECcccccccc
Q 036729 727 SGNIPSTIQQCKKLYELRLSENFFTGS 753 (970)
Q Consensus 727 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 753 (970)
++..|..+ .+|+.|++++|++.+.
T Consensus 539 ~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 539 LAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp CCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred CCCChhHh---CCcCEEEecCCCcccc
Confidence 66666544 2456666666666543
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-48 Score=458.26 Aligned_cols=487 Identities=21% Similarity=0.211 Sum_probs=344.1
Q ss_pred CCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecc
Q 036729 332 SLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLF 411 (970)
Q Consensus 332 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 411 (970)
+++.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..|..|+++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 44445555555444444455555566666666665555555555556666666666665555445556666666666666
Q ss_pred cccccccCCccccCCCCCCEEEcccccCCC-cCCcccccCCCCCEEeccccccCCcccccccCCCCc----cEEeecccc
Q 036729 412 DNMITGKIPVEIGKLQTLSAIYLYDNQMSG-SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL----VILQLRQND 486 (970)
Q Consensus 412 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~L~~n~ 486 (970)
+|.+++..+..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+++| +.+++++|.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 666554444445666666666666666554 345566666666666666666665555555555555 566666666
Q ss_pred CCCCCCCcccccccccEEeccCCcccC-ccCcchhcCCCCceEEccccccc------cCCCccccCCC--CCcEEEcccc
Q 036729 487 LSGPIPASLGYCKRLQQIALADNKLSG-SVPLTFRFLSELYLITLYNNSFK------GPLPPSLFQLK--KLRIINFSHN 557 (970)
Q Consensus 487 l~~~~~~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~--~L~~L~ls~n 557 (970)
+++..+..+..+ +|+.|++++|.... ..+..+..++.++...+....+. ......+..+. .++.++++++
T Consensus 189 l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 189 MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred ceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 665555555444 56666666654322 23344455555554444322221 11111222222 2455566655
Q ss_pred -ccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCc
Q 036729 558 -KFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635 (970)
Q Consensus 558 -~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 635 (970)
.+.+..+ .+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.+. .+|. ..+++|++|++++|.+.+..+
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccccc
Confidence 4444433 4556677777777777776 366667777 8888888888887 4554 477888999999988887665
Q ss_pred ccCcCcCcccEEEccCCcccCCc--cccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC-ccccc
Q 036729 636 PQLSKCAKLAHLLLSNNELTGTI--PFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP-PEIGN 712 (970)
Q Consensus 636 ~~l~~~~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~ 712 (970)
. ..+++|++|++++|.+++.. |..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+..
T Consensus 343 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 343 E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred c--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc
Confidence 4 67888999999999887654 67788889999999999998876554 8889999999999999987766 46888
Q ss_pred ccccceeccCCCccccccchhhhcccCCcEEECcccccc-ccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCE
Q 036729 713 LTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT-GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLER 791 (970)
Q Consensus 713 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~ 791 (970)
+++|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..++.|+. |++++|.+++..|..++++++|++
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-LDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE-EECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE-EECCCCccccCChhhhhcccCCCE
Confidence 999999999999999999999999999999999999998 689999999999998 999999999999999999999999
Q ss_pred EeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 792 LNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 792 L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
|++++|++++..|..+..+++|++|++++|+++|.+|
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 9999999999999999999999999999999999999
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-46 Score=444.29 Aligned_cols=519 Identities=20% Similarity=0.175 Sum_probs=298.3
Q ss_pred CcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccc
Q 036729 92 LETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAY 171 (970)
Q Consensus 92 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~ 171 (970)
.++++.++.+++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+.+..|..++++++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 345666666665 4555443 4677888888877766666777777777777777777665556666666666666666
Q ss_pred cccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccC
Q 036729 172 CQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIP 251 (970)
Q Consensus 172 ~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 251 (970)
|.+++..|..++++++|++|++++|++++..+..++++++|++|++++|.+++. .+|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-----------------------~lp 142 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLP 142 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-----------------------CCC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee-----------------------cCh
Confidence 666655555666666666666666666555444444444555444444444431 234
Q ss_pred ccccCCCCCCEEEccCccccccCCccccCCCCc----cEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhh
Q 036729 252 VELSHLFNLRYLNLLGNIFDGEIPSELNKLAQL----EELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFC 327 (970)
Q Consensus 252 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 327 (970)
..++++++|++|++++|.+.+..+..++.+++| ++|++++|.+.+..+..+... +|+.|++++|...........
T Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~ 221 (570)
T 2z63_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCI 221 (570)
T ss_dssp GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHH
T ss_pred hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhh
Confidence 444444555555555554444444444444444 555555555555555444433 455555555533221111112
Q ss_pred cCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCe
Q 036729 328 LNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLEN 407 (970)
Q Consensus 328 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 407 (970)
..++.++...+....+. ....++. .....+..++++ .++.
T Consensus 222 ~~l~~l~~~~l~~~~~~--------~~~~l~~----------~~~~~~~~l~~l----------------------~l~~ 261 (570)
T 2z63_A 222 QGLAGLEVHRLVLGEFR--------NEGNLEK----------FDKSALEGLCNL----------------------TIEE 261 (570)
T ss_dssp HTTTTCEEEEEEEEECC--------CCSSCEE----------CCTTTTGGGGGS----------------------EEEE
T ss_pred cCccccceeeecccccc--------Cchhhhh----------cchhhhcccccc----------------------chhh
Confidence 22333333222211110 0000000 001111111111 1333
Q ss_pred eecccc-cccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeecccc
Q 036729 408 LFLFDN-MITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQND 486 (970)
Q Consensus 408 L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 486 (970)
++++++ .+.+..|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCB
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCc
Confidence 444444 344444444555555555555555544 244445555 5666666666555 3332 345566666666666
Q ss_pred CCCCCCCcccccccccEEeccCCcccCcc--CcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccC
Q 036729 487 LSGPIPASLGYCKRLQQIALADNKLSGSV--PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY 564 (970)
Q Consensus 487 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 564 (970)
+.+..+. ..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+
T Consensus 337 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~--- 410 (570)
T 2z63_A 337 GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ--- 410 (570)
T ss_dssp SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES---
T ss_pred ccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc---
Confidence 6554443 45666666666666665443 44555566666666666655543333 5555555555555555443
Q ss_pred CCCCCCcccEEECCCCCCCCCCC-cccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCc-cCCcccCcCcC
Q 036729 565 PLTGSNSLTALDLTNNSFSGPIP-SELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-GQIAPQLSKCA 642 (970)
Q Consensus 565 ~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~ 642 (970)
..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ +.+|..+..++
T Consensus 411 --------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 411 --------------------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp --------------------CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred --------------------ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 333 34556666777777777777667777777778888888888776 56777778888
Q ss_pred cccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCc
Q 036729 643 KLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPP 708 (970)
Q Consensus 643 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 708 (970)
+|++|++++|++++..|.++..+++|++|++++|++++..|..|..+++|++|++++|++++..|.
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 888888888888877777888888888888888888877777788888888888888888876654
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.8e-47 Score=453.74 Aligned_cols=458 Identities=20% Similarity=0.270 Sum_probs=306.2
Q ss_pred CCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcC------CC------CCCcccccccccccccCCcccccCCCCcC
Q 036729 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSF------KG------ELPRSLDKLEELTDLLLNNNSFTGSFPPE 398 (970)
Q Consensus 331 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l------~~------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 398 (970)
.+++.|+++++.+.|.+|..++.+++|++|+|++|.+ .+ .+|... +..|+ ++++++.+.+..|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 3566666666666666677777777888888877754 22 223222 44555 677777776666655
Q ss_pred CCC-cCCCCeeecccccccccCCccccCCCCCCEEEcc--cccCCCcCCcccccCCCCCEEeccccccCCc---------
Q 036729 399 IGN-LSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLY--DNQMSGSIPRELTNCSGLTEIDFFGNHFSGS--------- 466 (970)
Q Consensus 399 l~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--------- 466 (970)
+.. +..+..+++....+. ......++.+.+. .|++++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 542 222222222221111 0111222222222 456666 666677777777777777777664
Q ss_pred --------cccccc--CCCCccEEeeccccCCCCCCCcccccccccEEeccCCc-ccC-ccCcchhcC------CCCceE
Q 036729 467 --------IPETMG--KLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNK-LSG-SVPLTFRFL------SELYLI 528 (970)
Q Consensus 467 --------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L 528 (970)
+|..++ .+++|++|++++|.+.+.+|..+..+++|+.|++++|+ +++ .+|..+..+ ++|+.|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 677766 77777777777777777777777777777777777777 776 677766655 777777
Q ss_pred EccccccccCCCc--cccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcC-CCceeccCcc
Q 036729 529 TLYNNSFKGPLPP--SLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRN-LSRLRLAHNH 605 (970)
Q Consensus 529 ~l~~n~l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~n~ 605 (970)
++++|.++ .+|. .+..+++|+.|++++|.++|.++.+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence 77777777 5666 677777777777777777766666666666777777777666 56666777777 7777777777
Q ss_pred ccCCCCcccccCC--CCcEEEccCCcCccCCcccCc-------CcCcccEEEccCCcccCCccccccccCccceEEcccC
Q 036729 606 LTGNIPSEFGKLT--ELNFLDLSFNSFTGQIAPQLS-------KCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSN 676 (970)
Q Consensus 606 l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~-------~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 676 (970)
++ .+|..+..++ +|++|++++|.+++.+|..+. .+++|++|++++|+++...+..+..+++|++|++++|
T Consensus 389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 76 5666666544 677777777777777776666 6667777777777777443344455777777777777
Q ss_pred cCcCCCCCC-CCCC-------CcceEEEccCCcCcccCCcccc--cccccceeccCCCccccccchhhhcccCCcEEECc
Q 036729 677 NFNGTVPAE-IGNC-------SKLLKLSLRGNNLSGKIPPEIG--NLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS 746 (970)
Q Consensus 677 ~l~~~~p~~-l~~l-------~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 746 (970)
+++ .+|.. +... ++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|+.|+|+
T Consensus 468 ~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 468 MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 777 34433 2222 26666666666666 4555554 66666666666666665 56666666666666666
Q ss_pred cccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccccc
Q 036729 747 ENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQ 826 (970)
Q Consensus 747 ~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 826 (970)
+|+ ++++|.+.+.+|..++++++|++|+|++|++ +.+|..+. ++|++||+++|++.+.
T Consensus 545 ~N~-------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 545 NQR-------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SCB-------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCc-------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 664 3478999999999999999999999999999 78898876 7999999999977653
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5e-46 Score=439.88 Aligned_cols=486 Identities=18% Similarity=0.186 Sum_probs=294.5
Q ss_pred EEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcc
Q 036729 310 TLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNN 389 (970)
Q Consensus 310 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 389 (970)
..+.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 9 ~c~~~~~~l~-~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred eEECCCCccc-cccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 3566666666 556544 356777777777777666666777777777777777777666666667777777777777
Q ss_pred cccCCCCcCCCCcCCCCeeecccccccc-cCCccccCCCCCCEEEcccccCCCcCC-cccccCCCCCEEeccccccCCcc
Q 036729 390 SFTGSFPPEIGNLSKLENLFLFDNMITG-KIPVEIGKLQTLSAIYLYDNQMSGSIP-RELTNCSGLTEIDFFGNHFSGSI 467 (970)
Q Consensus 390 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~ 467 (970)
.+++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 7666555556666677777777666664 244556666666666666666433333 45666666666666666666666
Q ss_pred cccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCcc--C-cchhcCCCCceEEccccccccCCC----
Q 036729 468 PETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV--P-LTFRFLSELYLITLYNNSFKGPLP---- 540 (970)
Q Consensus 468 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~--~-~~~~~l~~L~~L~l~~n~l~~~~~---- 540 (970)
|..+..+++|+.|+++.|.+.......+..+++|+.|++++|++++.. + .....+++|+.|++++|.+.+..+
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 666666666666666666654322222234566666666666665532 1 112334555666666655544322
Q ss_pred ccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccC-----CCCcccc
Q 036729 541 PSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTG-----NIPSEFG 615 (970)
Q Consensus 541 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~p~~~~ 615 (970)
..+..+++|+.+++++|.+.+.... .......+..+.+++.+++.++.+.. .++..+.
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~-----------------~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDF-----------------NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCC-----------------CCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred HHhhhhccccccccccccccccccc-----------------cccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 2223445555566655555432110 00001122334444555554444321 1122223
Q ss_pred cCCCCcEEEccCCcCccCCcccC-cCcCcccEEEccCCcccCCcc---ccccccCccceEEcccCcCcCCCC--CCCCCC
Q 036729 616 KLTELNFLDLSFNSFTGQIAPQL-SKCAKLAHLLLSNNELTGTIP---FWLGSLQEIGELDLSSNNFNGTVP--AEIGNC 689 (970)
Q Consensus 616 ~l~~L~~L~Ls~n~l~~~~~~~l-~~~~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l 689 (970)
..++|++|++++|.+. .+|..+ ..+++|++|++++|++++.+| ..++.+++|++|++++|++++..+ ..+..+
T Consensus 308 ~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC
Confidence 3455666666666655 333333 355666666666666655443 224556666666666666654322 235556
Q ss_pred CcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhh
Q 036729 690 SKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILD 769 (970)
Q Consensus 690 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ 769 (970)
++|++|++++|+++ .+|..+..+++|++|++++|++++. |..+ .++|+.|++++|++++.+ ..++.|+. |+
T Consensus 387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~-L~ 457 (549)
T 2z81_A 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQE-LY 457 (549)
T ss_dssp TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCE-EE
T ss_pred CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcE-EE
Confidence 66666666666666 4555566666666666666666532 2222 246777777777777643 35667776 88
Q ss_pred CCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 770 LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 770 ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+++|.++ .+|. .+.+++|++|||++|++++.+|..+..+++|++|++++|++.|.+|
T Consensus 458 Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 458 ISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8888887 6665 4678999999999999999999999999999999999999999999
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-45 Score=437.16 Aligned_cols=482 Identities=18% Similarity=0.222 Sum_probs=266.0
Q ss_pred CCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCc
Q 036729 53 MCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPP 132 (970)
Q Consensus 53 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~ 132 (970)
.|.|.|+ |+. ++++++ .+|..+. ++|++|+|++|.+++..|..++++++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC----------CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4999998 863 233444 3444433 6777777777777776677777777777777777777766667
Q ss_pred CCCCCCCCcEEEccCccCCccCCccccCCcccchhhcccccccc-CCCccccCCceeeEEEcCCCcC-CCCCcccccCCc
Q 036729 133 EIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNG-SIPVEIGNLKHLTSLDLQMNKL-SGLIPEAIHGCE 210 (970)
Q Consensus 133 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~Ls~n~i-~~~~~~~l~~l~ 210 (970)
.++.+++|++|++++|.+.+..|..++++++|++|++++|.+++ ..|..++++++|++|++++|++ ....+..|.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 77777777777777777776666667777777777777777765 3456677777777777777763 333345677777
Q ss_pred ccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccC--C-ccccCCCCccEE
Q 036729 211 ELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEI--P-SELNKLAQLEEL 287 (970)
Q Consensus 211 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~--~-~~l~~l~~L~~L 287 (970)
+|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+.. | .....+++|+.|
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 7777777777777777777777777777777777665322222345677777777777776532 1 122345667777
Q ss_pred ECcCCcCccccc----cccCCCCCccEEEccCCcccCCCch-----hhhcCCCCCcEEEccCCcCCCC-----Ccccccc
Q 036729 288 DLSKNNLSGSIS----LLNTQLKNLETLVLSDNAFTGSIPI-----KFCLNNSSLQQLILARNKLSGE-----FPLELLR 353 (970)
Q Consensus 288 ~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~ 353 (970)
++++|.+++..+ ..+..+++|+.+++++|.+.+.... ......++++.+++.++.+... .+..+..
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 777766654433 2234556666777766665542110 1112344555555555544321 1111223
Q ss_pred CCCCCEEeCCCCcCCCCCCccc-ccccccccccCCcccccCCCC---cCCCCcCCCCeeecccccccccCC--ccccCCC
Q 036729 354 CSSLQQLDLSDNSFKGELPRSL-DKLEELTDLLLNNNSFTGSFP---PEIGNLSKLENLFLFDNMITGKIP--VEIGKLQ 427 (970)
Q Consensus 354 ~~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~ 427 (970)
.++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+| ..++.+++|++|++++|.+++..+ ..+..++
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 345555555555544 333333 345555555555555544332 224445555555555555543221 2244455
Q ss_pred CCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEecc
Q 036729 428 TLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALA 507 (970)
Q Consensus 428 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 507 (970)
+|++|++++|+++ .+|..+..+++|++|++++|.++.. |..+ .++|+.|++++|++++.. ..+++|+.|+++
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls 459 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYIS 459 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECC
Confidence 5555555555444 3444444445555555555544421 1111 134444555555444321 234444444444
Q ss_pred CCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcccccc
Q 036729 508 DNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKF 559 (970)
Q Consensus 508 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 559 (970)
+|+++ .+|. ...+++|+.|++++|.+++..|..+..+++|+.+++++|.+
T Consensus 460 ~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 460 RNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp SSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 44444 2222 22344444444444444444444444444444444444443
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-45 Score=431.68 Aligned_cols=454 Identities=22% Similarity=0.234 Sum_probs=326.1
Q ss_pred cEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccc
Q 036729 334 QQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDN 413 (970)
Q Consensus 334 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 413 (970)
+.+++++|.+++ +|..+. ++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 457777777763 444443 67777777777777666666777777777777777776665666777777777777777
Q ss_pred cccccCCccccCCCCCCEEEcccccCCC-cCCcccccCCCCCEEeccccccCCcccccccCCCCc--cEEeeccccC--C
Q 036729 414 MITGKIPVEIGKLQTLSAIYLYDNQMSG-SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL--VILQLRQNDL--S 488 (970)
Q Consensus 414 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~ 488 (970)
.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 766 34443 56666677776666665 355666666666666666666654 234455555 6666666666 5
Q ss_pred CCCCCcccccc-cccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccc-------cc
Q 036729 489 GPIPASLGYCK-RLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNK-------FS 560 (970)
Q Consensus 489 ~~~~~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~-------l~ 560 (970)
+..|..+..+. ....+++++|.+.+.++. ..+..+++|+.+++++|. +.
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~-----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILD-----------------------VSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCC-----------------------CCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred ccccccccccccceEEEEeccCcchhhhhh-----------------------hhhhcccceeeccccccccccccceee
Confidence 55555554443 222344455544433322 233344555555555554 34
Q ss_pred cccCCCCCCCcccEEECCCCCCCCCCCccc---ccCcCCCceeccCccccCCCCccc-----ccCCCCcEEEccCCcCcc
Q 036729 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSEL---AMSRNLSRLRLAHNHLTGNIPSEF-----GKLTELNFLDLSFNSFTG 632 (970)
Q Consensus 561 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~ 632 (970)
+.++.+..+++|+.|++++|.+++..+..+ ...++|++|++++|+++|.+|..+ ..+++|+.+++++|.+
T Consensus 211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 444444555555555555555443222111 124578888999888888888887 8899999999999988
Q ss_pred CCc-ccCcCc---CcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcc--cC
Q 036729 633 QIA-PQLSKC---AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG--KI 706 (970)
Q Consensus 633 ~~~-~~l~~~---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~ 706 (970)
.+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++.+|..+..+++|++|++++|++++ .+
T Consensus 289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 344 344443 67999999999886542 12678999999999999999889999999999999999999987 55
Q ss_pred CcccccccccceeccCCCccccccch-hhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccC
Q 036729 707 PPEIGNLTALNVLNLQRNSLSGNIPS-TIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGS 785 (970)
Q Consensus 707 ~~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~ 785 (970)
|..+..+++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..+. +.|+. |++++|.++ .+|..+..
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~-L~Ls~N~l~-~ip~~~~~ 442 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKV-LDLHSNKIK-SIPKQVVK 442 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCE-EECCSSCCC-CCCGGGGG
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCE-EECCCCccc-ccchhhhc
Confidence 67788999999999999999985665 488899999999999999998888775 67887 999999999 88988889
Q ss_pred CCCCCEEeCCCCcCccccCcc-cCCCCcCcEEecCCCcccccCC
Q 036729 786 LLKLERLNISYNQLQGQVPAS-LGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 786 l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+++|++|++++|++++ +|.. +..+++|++|++++|+++|.++
T Consensus 443 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 443 LEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 9999999999999995 6655 8999999999999999999998
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-44 Score=435.15 Aligned_cols=444 Identities=20% Similarity=0.276 Sum_probs=313.2
Q ss_pred CCCCEEeCCCCcCCCCCCcccccccccccccC-CcccccCCCCcCCCCc-CCCC-----eeec----------ccccccc
Q 036729 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLL-NNNSFTGSFPPEIGNL-SKLE-----NLFL----------FDNMITG 417 (970)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l-~~L~-----~L~L----------~~n~l~~ 417 (970)
.+++.|+|+++.+.|.+|..++.+++|+.|+| ++|.+.|..|...... ..+. .+.. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46888888888888888888888888888888 7787776633221111 0000 0000 0000000
Q ss_pred c-----------CCccccCCCCCCEEEccc--ccCCCcCCcccccCCCCCEEeccccccCC-----------------cc
Q 036729 418 K-----------IPVEIGKLQTLSAIYLYD--NQMSGSIPRELTNCSGLTEIDFFGNHFSG-----------------SI 467 (970)
Q Consensus 418 ~-----------~~~~~~~l~~L~~L~l~~--n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~ 467 (970)
. .+........++.+.+.. |.+++ +|..+.++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 011111222333333433 66666 77778888888888888888877 37
Q ss_pred ccccc--CCCCccEEeeccccCCCCCCCcccccccccEEeccCCc-ccC-ccCcchhcCC-------CCceEEccccccc
Q 036729 468 PETMG--KLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNK-LSG-SVPLTFRFLS-------ELYLITLYNNSFK 536 (970)
Q Consensus 468 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~-~~~~~~~~l~-------~L~~L~l~~n~l~ 536 (970)
|..++ .+++|+.|++++|.+.+.+|..+..+++|+.|++++|+ +++ .+|..+..++ +|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 77766 88888888888888888888888888888888888887 877 7777666554 8888888888888
Q ss_pred cCCCc--cccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcC-CCceeccCccccCCCCcc
Q 036729 537 GPLPP--SLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRN-LSRLRLAHNHLTGNIPSE 613 (970)
Q Consensus 537 ~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~p~~ 613 (970)
.+|. .+..+++|+.|++++|.++ .++.+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 6776 7888888888888888887 5557777888888888888887 67777777777 888888888877 67777
Q ss_pred cccCCC--CcEEEccCCcCccCCccc---Cc--CcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCC
Q 036729 614 FGKLTE--LNFLDLSFNSFTGQIAPQ---LS--KCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI 686 (970)
Q Consensus 614 ~~~l~~--L~~L~Ls~n~l~~~~~~~---l~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 686 (970)
+..++. |+.|++++|.+++.+|.. +. .+.+|+.|++++|.++...+..+..+++|+.|+|++|+++ .+|..+
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 766654 888888888887765532 22 3347888888888887433333446778888888888877 444433
Q ss_pred CC--------CCcceEEEccCCcCcccCCcccc--cccccceeccCCCccccccchhhhcccCCcEEECccccccccCch
Q 036729 687 GN--------CSKLLKLSLRGNNLSGKIPPEIG--NLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA 756 (970)
Q Consensus 687 ~~--------l~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~ 756 (970)
.. |++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------- 787 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------- 787 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------
Confidence 22 237777777777777 5666665 67777777777777776 56667777777777777664
Q ss_pred hhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 757 ~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
++++|.+.+.+|..++++++|+.|+|++|++ +.+|..+. ++|+.||+++|++...-+
T Consensus 788 ------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 788 ------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp ------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred ------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 4466888888888888889999999999988 78888766 588899999998765543
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-42 Score=419.50 Aligned_cols=516 Identities=20% Similarity=0.183 Sum_probs=318.5
Q ss_pred CCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEcc
Q 036729 235 SLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLS 314 (970)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 314 (970)
++++|||++|++++..+.+|.++++|++|+|++|++++..+.+|+++++|++|+|++|++++..+.+|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 45566666666655444555555555555555555555555555555555555555555554444444444444444444
Q ss_pred CCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCC-CCcccccccccccccCCcccccC
Q 036729 315 DNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGE-LPRSLDKLEELTDLLLNNNSFTG 393 (970)
Q Consensus 315 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~ 393 (970)
+|.+ ++..+..+..+++|++|++++|.+.+. .|..+..+++|++|++++|++++
T Consensus 133 ~N~l-------------------------~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 133 ETNL-------------------------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TSCC-------------------------CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCcC-------------------------CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 4433 333333455666777777777766542 34555555555555555555554
Q ss_pred CCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCC-ccccccc
Q 036729 394 SFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSG-SIPETMG 472 (970)
Q Consensus 394 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~ 472 (970)
..+..+..+.+++. ....++++.|.+....+..+ ....+..+++.+|.... ..+..+.
T Consensus 188 ~~~~~l~~L~~l~~--------------------~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~ 246 (635)
T 4g8a_A 188 IYCTDLRVLHQMPL--------------------LNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQ 246 (635)
T ss_dssp ECGGGGHHHHTCTT--------------------CCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHH
T ss_pred cccccccchhhhhh--------------------hhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhc
Confidence 44444433332221 11234444444443222222 22234455555554332 2223344
Q ss_pred CCCCccEEeeccccC------CCCCCCcccccccccEEeccCCcccCc---cCcchhcCCCCceEEccccccccCCCccc
Q 036729 473 KLKNLVILQLRQNDL------SGPIPASLGYCKRLQQIALADNKLSGS---VPLTFRFLSELYLITLYNNSFKGPLPPSL 543 (970)
Q Consensus 473 ~l~~L~~L~L~~n~l------~~~~~~~l~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 543 (970)
.+..++...+..+.. .......+.....+...++..+..... .+..+.....++.+.+.++.+...
T Consensus 247 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~----- 321 (635)
T 4g8a_A 247 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV----- 321 (635)
T ss_dssp TTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-----
T ss_pred CCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-----
Confidence 555555554433222 112222333444444444433322211 122233334444444444433322
Q ss_pred cCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEE
Q 036729 544 FQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFL 623 (970)
Q Consensus 544 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 623 (970)
..+....+++.|++.+|.+.+..+. .+..|+.+++.+|..... .....+++|+.|
T Consensus 322 --------------------~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L 376 (635)
T 4g8a_A 322 --------------------KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFL 376 (635)
T ss_dssp --------------------GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEE
T ss_pred --------------------cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccc
Confidence 1223334455555555554433322 244566667766665432 234567778888
Q ss_pred EccCCcCcc--CCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCC-CCCCCCCcceEEEccCC
Q 036729 624 DLSFNSFTG--QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVP-AEIGNCSKLLKLSLRGN 700 (970)
Q Consensus 624 ~Ls~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N 700 (970)
++++|.+.. ..+..+..+.+|+.+++..|.... .+..+..+++|+.+++++|+.....+ ..+..+++++.++++.|
T Consensus 377 ~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n 455 (635)
T 4g8a_A 377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455 (635)
T ss_dssp ECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred hhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence 888887753 344555667788888888887664 34456778888888888877766544 45778888899999999
Q ss_pred cCcccCCcccccccccceeccCCCcc-ccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccC
Q 036729 701 NLSGKIPPEIGNLTALNVLNLQRNSL-SGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI 779 (970)
Q Consensus 701 ~l~~~~~~~l~~l~~L~~L~L~~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~i 779 (970)
.+.+..+..+..+++|+.|++++|++ .+..|..|..+++|+.|+|++|++++.+|..|.++++|+. |+|++|.+++..
T Consensus 456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~-L~Ls~N~l~~l~ 534 (635)
T 4g8a_A 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV-LNMSHNNFFSLD 534 (635)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE-EECTTSCCCBCC
T ss_pred ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE-EECCCCcCCCCC
Confidence 98888888888888999999998874 4567788889999999999999999988999999999998 999999999999
Q ss_pred CccccCCCCCCEEeCCCCcCccccCcccCCC-CcCcEEecCCCcccccCC
Q 036729 780 PPSLGSLLKLERLNISYNQLQGQVPASLGKL-TSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 780 p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l-~~L~~l~ls~N~l~g~~p 828 (970)
|..|+++++|++|||++|+|++..|..+..+ ++|++|++++|++.|.|.
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999999999999999998 689999999999999998
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.8e-44 Score=418.26 Aligned_cols=452 Identities=20% Similarity=0.228 Sum_probs=283.3
Q ss_pred EEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCc
Q 036729 69 VGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN 148 (970)
Q Consensus 69 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n 148 (970)
+.+|+++++++ .+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..++.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 36888888888 4666665 88999999999998877788899999999999999988777888888999999999999
Q ss_pred cCCccCCccccCCcccchhhcccccccc-CCCccccCCceeeEEEcCCCcCCCCCcccccCCccc--cccccccccc--C
Q 036729 149 LLWGEIPPHIGNLTELRELAIAYCQLNG-SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEEL--QKFAASNNML--E 223 (970)
Q Consensus 149 ~~~~~~p~~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L--~~L~l~~n~l--~ 223 (970)
.+. .+|.. .+++|++|++++|++++ .+|..++++++|++|++++|++++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 886 56655 78888888888888876 467788888888888888888775 356666666 8888888877 6
Q ss_pred CCCcccccCCC-CCcEEEccCCcCccccCc-cccCCCCCCEEEccCcc-------ccccCCccccCCCCccEEECcCCcC
Q 036729 224 GTIPSSIVLLK-SLQILNLANNSLSGSIPV-ELSHLFNLRYLNLLGNI-------FDGEIPSELNKLAQLEELDLSKNNL 294 (970)
Q Consensus 224 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------~~~~~~~~l~~l~~L~~L~L~~n~l 294 (970)
+..|..+..+. ....+++++|.+.+.++. .+..+++|+.|++++|. +.+.+| .++.+++|++|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 67777666655 334566677776655543 45667777777777775 554444 566677777777776665
Q ss_pred ccccccccC---CCCCccEEEccCCcccCCCchhhh----cCCCCCcEEEccCCcCCCCCc-cccccC---CCCCEEeCC
Q 036729 295 SGSISLLNT---QLKNLETLVLSDNAFTGSIPIKFC----LNNSSLQQLILARNKLSGEFP-LELLRC---SSLQQLDLS 363 (970)
Q Consensus 295 ~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~-~~~~~~---~~L~~L~Ls 363 (970)
++.....+. ..++|++|++++|.+.|.+|..++ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 543221110 134666666666666666665552 3345555555555554 222 222222 345555555
Q ss_pred CCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCC--
Q 036729 364 DNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSG-- 441 (970)
Q Consensus 364 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 441 (970)
+|.+.... .+..+++|++|++++|.+++.+|..++.+++|++|++++|++++
T Consensus 311 ~n~l~~~~--------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 311 GTRMVHML--------------------------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp SSCCCCCC--------------------------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred CCcccccc--------------------------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 55443221 11344455555555555554444445555555555555555544
Q ss_pred cCCcccccCCCCCEEeccccccCCcccc-cccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchh
Q 036729 442 SIPRELTNCSGLTEIDFFGNHFSGSIPE-TMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFR 520 (970)
Q Consensus 442 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~ 520 (970)
.+|..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+++..|..+. ++|+.|++++|+++ .+|..+.
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 3334455555555555555555543333 244555555555555555544444332 45566666666655 4444444
Q ss_pred cCCCCceEEccccccccCCCccccCCCCCcEEEcccccccc
Q 036729 521 FLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSG 561 (970)
Q Consensus 521 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 561 (970)
.+++|+.|++++|.++...+..+..+++|+.+++++|.+++
T Consensus 442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 56666666666666654333335566666666666666654
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.7e-42 Score=414.24 Aligned_cols=541 Identities=21% Similarity=0.160 Sum_probs=302.5
Q ss_pred EEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccc
Q 036729 94 TLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQ 173 (970)
Q Consensus 94 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~ 173 (970)
+.+-++.+++ .+|..+. +++++|||++|.+++..|..|.++++|++|||++|.+.+..|..|.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 3455555665 4665443 478888888888886666678888888888888887766555566666666666666666
Q ss_pred cccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCcc
Q 036729 174 LNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE 253 (970)
Q Consensus 174 ~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 253 (970)
+++..+..|+++++|++|++++|++++..+..|+++++|++|++++|.+++. ..|..
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-----------------------~~~~~ 168 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLPEY 168 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------CCCGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC-----------------------CCchh
Confidence 6554445556666666666666666555444455555555555555544331 22334
Q ss_pred ccCCCCCCEEEccCccccccCCccccCCCC----ccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcC
Q 036729 254 LSHLFNLRYLNLLGNIFDGEIPSELNKLAQ----LEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLN 329 (970)
Q Consensus 254 l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 329 (970)
+..+++|++|++++|++.+..+..+..+.+ ...++++.|.+....+..+. ...++.+++.+|.....++......
T Consensus 169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~ 247 (635)
T 4g8a_A 169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQG 247 (635)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHT
T ss_pred hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcC
Confidence 444444444555444444444444433322 22455566655544443332 2344555555554433333333323
Q ss_pred CCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeee
Q 036729 330 NSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLF 409 (970)
Q Consensus 330 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 409 (970)
...++...+..+..... ..+.......+..+..+....+..+....
T Consensus 248 l~~l~~~~l~~~~~~~~------------------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~---------------- 293 (635)
T 4g8a_A 248 LAGLEVHRLVLGEFRNE------------------GNLEKFDKSALEGLCNLTIEEFRLAYLDY---------------- 293 (635)
T ss_dssp TTTCEEEEEEEECCTTS------------------CCCSCCCTTTTGGGGGSEEEEEEEECCCS----------------
T ss_pred Ccccccccccccccccc------------------cccccccccccccccchhhhhhhhhhhcc----------------
Confidence 33333333222111100 00111111122222222222222111110
Q ss_pred cccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCC
Q 036729 410 LFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSG 489 (970)
Q Consensus 410 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 489 (970)
.....+..+....+++.+.+.++.+... ..+..+..++.|++.+|.+.+..+. .++.|+.+++..|.+..
T Consensus 294 -----~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 294 -----YLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp -----CEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC
T ss_pred -----cccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC
Confidence 0001112233334444444444443322 1233344555555555555433222 23445555555555433
Q ss_pred CCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCC
Q 036729 490 PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGS 569 (970)
Q Consensus 490 ~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 569 (970)
.. ....+++|+.++++.|.+... +..+..+..+.+|+.++++.+........+..+
T Consensus 364 ~~--~~~~l~~L~~L~ls~n~l~~~----------------------~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l 419 (635)
T 4g8a_A 364 AF--SEVDLPSLEFLDLSRNGLSFK----------------------GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL 419 (635)
T ss_dssp BC--CCCBCTTCCEEECCSSCCBEE----------------------EECCHHHHSCSCCCEEECCSCSEEEECSCCTTC
T ss_pred Cc--ccccccccccchhhccccccc----------------------cccccchhhhhhhhhhhcccccccccccccccc
Confidence 21 223444555555555544321 112233334455555555555544333333344
Q ss_pred CcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCC-CcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEE
Q 036729 570 NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNI-PSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLL 648 (970)
Q Consensus 570 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~ 648 (970)
++|+.++++.+. ..... +..|..+++++.++++.|.+.+..+..+..+++|+.|+
T Consensus 420 ~~L~~l~l~~~~------------------------~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 420 EQLEHLDFQHSN------------------------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp TTCCEEECTTSE------------------------EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred ccccchhhhhcc------------------------ccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 444444444333 32222 23456777788888888888877777778888888888
Q ss_pred ccCCcc-cCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccc
Q 036729 649 LSNNEL-TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLS 727 (970)
Q Consensus 649 L~~n~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 727 (970)
+++|.+ .+..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|+++
T Consensus 476 Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 476 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555 (635)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred hhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC
Confidence 888874 3456777888888888888888888888888888888999999998888888888888889999999999999
Q ss_pred cccchhhhcc-cCCcEEECcccccccc
Q 036729 728 GNIPSTIQQC-KKLYELRLSENFFTGS 753 (970)
Q Consensus 728 ~~~p~~~~~l-~~L~~L~Ls~N~l~~~ 753 (970)
+..|..+..+ ++|+.|+|++|+|++.
T Consensus 556 ~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 556 TSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp BCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 8888888887 6799999999998864
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-42 Score=407.51 Aligned_cols=460 Identities=22% Similarity=0.210 Sum_probs=315.0
Q ss_pred CCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeee
Q 036729 330 NSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLF 409 (970)
Q Consensus 330 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 409 (970)
+...+.+++++|.+++ +|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 4445778888887775 444332 6788888888888777777777777888888888877776677777777788888
Q ss_pred cccccccccCCccccCCCCCCEEEcccccCCC-cCCcccccCCCCCEEeccccccCCcccccccCCCCc--cEEeecccc
Q 036729 410 LFDNMITGKIPVEIGKLQTLSAIYLYDNQMSG-SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL--VILQLRQND 486 (970)
Q Consensus 410 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~ 486 (970)
+++|.++ .+|.. .+++|++|++++|++++ .+|..+.++++|++|++++|.+++. .+..+++| +.|++++|.
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 8877777 45544 67777777777777766 3456777777777777777777653 33444444 777777777
Q ss_pred C--CCCCCCcccccc-cccEEeccCCcccCccCc-chhcCCCCceEEcccccc-----ccCCCccccCCCCCcEEEcccc
Q 036729 487 L--SGPIPASLGYCK-RLQQIALADNKLSGSVPL-TFRFLSELYLITLYNNSF-----KGPLPPSLFQLKKLRIINFSHN 557 (970)
Q Consensus 487 l--~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~ls~n 557 (970)
+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.. .+. ...+..++.++.++++++
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCC
Confidence 7 666666665543 112445666666554432 334455555555555531 111 112334444444444444
Q ss_pred ccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCccc-----ccCCCCcEEEccCCcCcc
Q 036729 558 KFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEF-----GKLTELNFLDLSFNSFTG 632 (970)
Q Consensus 558 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~ 632 (970)
.+.+. .+.+ ++.. ...++|++|++++|.++|.+|..+ ..++.|+.++++.|.+
T Consensus 260 ~l~~~------------------~~~~-~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-- 317 (562)
T 3a79_B 260 ETTWK------------------CSVK-LFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-- 317 (562)
T ss_dssp EECHH------------------HHHH-HHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--
T ss_pred cCcHH------------------HHHH-HHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--
Confidence 43321 0000 1111 122367777777777776677665 5666666666666665
Q ss_pred CCc-ccCcC---cCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCccc--C
Q 036729 633 QIA-PQLSK---CAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGK--I 706 (970)
Q Consensus 633 ~~~-~~l~~---~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~ 706 (970)
.+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|++++.+|..+..+++|++|++++|++++. +
T Consensus 318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 395 (562)
T 3a79_B 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395 (562)
T ss_dssp SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH
T ss_pred ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc
Confidence 233 22221 256888888888775332 125678888888888888888888888888888888888888863 3
Q ss_pred CcccccccccceeccCCCccccccc-hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccC
Q 036729 707 PPEIGNLTALNVLNLQRNSLSGNIP-STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGS 785 (970)
Q Consensus 707 ~~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~ 785 (970)
|..+..+++|++|++++|++++.+| ..+..+++|+.|++++|++++.+|..+. +.|+. |++++|.++ .+|..+.+
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~-L~L~~N~l~-~ip~~~~~ 471 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV-LDLHNNRIM-SIPKDVTH 471 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE-EECCSSCCC-CCCTTTTS
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE-EECCCCcCc-ccChhhcC
Confidence 4567888889999999998888444 4577888999999999999888887665 67777 999999998 78888889
Q ss_pred CCCCCEEeCCCCcCccccCcc-cCCCCcCcEEecCCCcccccCC
Q 036729 786 LLKLERLNISYNQLQGQVPAS-LGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 786 l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+++|++|++++|++++ +|.. +..+++|++|++++|++.|.||
T Consensus 472 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 472 LQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 9999999999999995 6655 9999999999999999999998
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.8e-42 Score=372.66 Aligned_cols=293 Identities=31% Similarity=0.461 Sum_probs=269.7
Q ss_pred cCChHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCC--ccceEecCCC--CCEEEEECCCCCCcc--ccccCccCCCCCcE
Q 036729 21 GGISTDSFWLLRIKQELVDPTGILENWSARAHMCS--WHGVTCSDDQ--KHVVGLNLSSSGLSG--SISRDFLNLTSLET 94 (970)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~~~~l~~l~~L~~ 94 (970)
.|.++|++||++||+++.+|. .+++|..+++||. |.||+|+..+ ++|+.|+|+++.++| .+|..+.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 588999999999999998875 7889987889999 9999998654 899999999999999 89999999999999
Q ss_pred EECCC-CCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccc
Q 036729 95 LDLSS-NSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQ 173 (970)
Q Consensus 95 L~Ls~-n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~ 173 (970)
|+|++ |.+.+.+|..++++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|+
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCc-eeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCc
Q 036729 174 LNGSIPVEIGNLK-HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPV 252 (970)
Q Consensus 174 ~~~~~p~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 252 (970)
+++.+|..+++++ +|++|++++|++++..|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.+|.
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 9999999999998 999999999999999999998887 99999999999988888899999999999999999877665
Q ss_pred cccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCc
Q 036729 253 ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNA 317 (970)
Q Consensus 253 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 317 (970)
+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|.
T Consensus 240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp -CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred -ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 788899999999999999888999999999999999999998888876 778888888888887
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.7e-41 Score=396.53 Aligned_cols=458 Identities=19% Similarity=0.167 Sum_probs=337.7
Q ss_pred CCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCccccccccccc
Q 036729 304 QLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTD 383 (970)
Q Consensus 304 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 383 (970)
.+...+++++++|.+++ +|..+ .+++++|++++|.+.+..+..+..+++|++|++++|++++..|..|..+++|++
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 34556899999999994 88765 389999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCCcCCCCcCCCCeeecccccccc-cCCccccCCCCCCEEEcccccCCCcCCcccccCCCC--CEEeccc
Q 036729 384 LLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITG-KIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGL--TEIDFFG 460 (970)
Q Consensus 384 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~ 460 (970)
|++++|.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+. .+..+++| ++|++++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 999999998 56665 89999999999999987 4568899999999999999999864 45556666 9999999
Q ss_pred ccc--CCcccccccCCC--CccEEeeccccCCCCCCC-cccccccccEEeccCCccc----CccCcchhcCCCCceEEcc
Q 036729 461 NHF--SGSIPETMGKLK--NLVILQLRQNDLSGPIPA-SLGYCKRLQQIALADNKLS----GSVPLTFRFLSELYLITLY 531 (970)
Q Consensus 461 n~l--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~l~ 531 (970)
|.+ ++..|..+..+. .+ .+++++|.+.+.++. .+..+++|+.+++++|... ......+..++.++.+++.
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred ccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 999 888888887765 33 568889988876654 4667899999999998521 1122356788899999988
Q ss_pred ccccccCCCcc---ccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCccc-----ccCcCCCceeccC
Q 036729 532 NNSFKGPLPPS---LFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSEL-----AMSRNLSRLRLAH 603 (970)
Q Consensus 532 ~n~l~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~Ls~ 603 (970)
++.+.+..... ....++|++|++++|.++|.++ ..+ ..++.|+.++++.
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip-----------------------~~~~~~~~~~L~~L~~~~~~~ 314 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID-----------------------REEFTYSETALKSLMIEHVKN 314 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCC-----------------------CCCCCCCSCSCCEEEEEEEEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeecccc-----------------------chhhhcccccchheehhhccc
Confidence 77765421110 1122366666666666655433 333 3333344444444
Q ss_pred ccccCCCC-ccccc---CCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCc
Q 036729 604 NHLTGNIP-SEFGK---LTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679 (970)
Q Consensus 604 n~l~~~~p-~~~~~---l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 679 (970)
+.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|.+++.+|.++..+++|++|++++|+++
T Consensus 315 ~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 390 (562)
T 3a79_B 315 QVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390 (562)
T ss_dssp CCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC
T ss_pred cee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC
Confidence 443 233 12211 245677777777665322 1245667777777777777777777777777777777777777
Q ss_pred CC--CCCCCCCCCcceEEEccCCcCcccCCc-ccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCch
Q 036729 680 GT--VPAEIGNCSKLLKLSLRGNNLSGKIPP-EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA 756 (970)
Q Consensus 680 ~~--~p~~l~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~ 756 (970)
+. +|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|.
T Consensus 391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~ 467 (562)
T 3a79_B 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK 467 (562)
T ss_dssp BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT
T ss_pred CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh
Confidence 53 245567777777777777777764444 466777888888888887776665543 67888888888887 6777
Q ss_pred hhhhhhhhHhhhhCCCCcccccCCcc-ccCCCCCCEEeCCCCcCccccC
Q 036729 757 DLGRLTELQVILDLSKNNFSGEIPPS-LGSLLKLERLNISYNQLQGQVP 804 (970)
Q Consensus 757 ~l~~l~~L~~~L~ls~N~l~g~ip~~-~~~l~~L~~L~ls~N~l~~~~p 804 (970)
.+..++.|+. |++++|.++ .+|.. ++.+++|+.|++++|.+.+..|
T Consensus 468 ~~~~l~~L~~-L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 468 DVTHLQALQE-LNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTTSSCCCSE-EECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hhcCCCCCCE-EECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 7778888887 888888888 45555 8899999999999999987654
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.5e-39 Score=369.47 Aligned_cols=354 Identities=22% Similarity=0.232 Sum_probs=260.0
Q ss_pred CCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEc
Q 036729 451 SGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITL 530 (970)
Q Consensus 451 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 530 (970)
++|++|++++|.+++..|..|..+++|++|++++|.+.+.++ +..|..+++|+.|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-----------------------~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-----------------------NNTFRGLSSLIILKL 86 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-----------------------TTTTTTCTTCCEEEC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-----------------------cccccccccCCEEeC
Confidence 445555555555555445555555555555555555443221 233444445555555
Q ss_pred cccccccCCCccccCCCCCcEEEccccccccccC---CCCCCCcccEEECCCCCCCCCCCcc-cccCcCCCceeccCccc
Q 036729 531 YNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY---PLTGSNSLTALDLTNNSFSGPIPSE-LAMSRNLSRLRLAHNHL 606 (970)
Q Consensus 531 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~Ls~n~l 606 (970)
++|.+.+..|..+..+++|++|++++|.+++..+ .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 5555544445555555555555555555554222 2555666666666666666665654 66777777777777777
Q ss_pred cCCCCcccccC--CCCcEEEccCCcCccCCccc--------CcCcCcccEEEccCCcccCCcccccccc---CccceEEc
Q 036729 607 TGNIPSEFGKL--TELNFLDLSFNSFTGQIAPQ--------LSKCAKLAHLLLSNNELTGTIPFWLGSL---QEIGELDL 673 (970)
Q Consensus 607 ~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~~~~--------l~~~~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L 673 (970)
++..|..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++++..|..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 77777666655 67777788777777654433 2355778888888888877777666544 77888888
Q ss_pred ccCcCcCC----------CCCCCCC--CCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCc
Q 036729 674 SSNNFNGT----------VPAEIGN--CSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY 741 (970)
Q Consensus 674 s~N~l~~~----------~p~~l~~--l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 741 (970)
++|.+.+. .+..+.. .++|++|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 87755432 2222333 36899999999999999999999999999999999999999999999999999
Q ss_pred EEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCC
Q 036729 742 ELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN 821 (970)
Q Consensus 742 ~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N 821 (970)
.|++++|.+++..|..++.++.|+. |++++|.+++..|..++++++|++|++++|++++..+..+..+++|++|++++|
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEV-LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCE-EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCCcChhHhcCcccCCE-EECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 9999999999888999999999998 999999999999999999999999999999999988888899999999999999
Q ss_pred cccccCC
Q 036729 822 HLQGQLP 828 (970)
Q Consensus 822 ~l~g~~p 828 (970)
+++|.+|
T Consensus 406 ~l~~~~~ 412 (455)
T 3v47_A 406 PWDCSCP 412 (455)
T ss_dssp CBCCCTT
T ss_pred CcccCCC
Confidence 9999999
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.7e-39 Score=366.51 Aligned_cols=407 Identities=22% Similarity=0.257 Sum_probs=190.7
Q ss_pred CCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCC-------------CCeeecccccccccCC
Q 036729 354 CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSK-------------LENLFLFDNMITGKIP 420 (970)
Q Consensus 354 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-------------L~~L~L~~n~l~~~~~ 420 (970)
.++|++|++++|.+ +.+|..++.+++|++|++++|.+.+.+|..++++.+ +++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 35556666666666 456666666666666666666666666666665555 4677777777664 23
Q ss_pred ccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCccccccc
Q 036729 421 VEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKR 500 (970)
Q Consensus 421 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~ 500 (970)
. -.++|++|++++|.+++ +|.. +++|++|++++|.+++. +.. .++|++|++++|.+++ +| .+..+++
T Consensus 88 ~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred C---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 2 13567777777777765 4432 35677777777766642 211 1567777777777765 45 4666777
Q ss_pred ccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCC
Q 036729 501 LQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNN 580 (970)
Q Consensus 501 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n 580 (970)
|+.|++++|++++ +|.. ..+|+.|++++|.+++ +| .+..+++|+.|++++|.+++. +.. .++|++|++++|
T Consensus 155 L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~--~~~L~~L~l~~n 225 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL--PLSLESIVAGNN 225 (454)
T ss_dssp CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC--CTTCCEEECCSS
T ss_pred CCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC--cCcccEEECcCC
Confidence 7777777776665 3332 2366666666666665 33 466666666666666666542 211 135666666666
Q ss_pred CCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccc
Q 036729 581 SFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPF 660 (970)
Q Consensus 581 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~ 660 (970)
.++ .+| .+..+++|++|++++|++++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|++++. |.
T Consensus 226 ~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~ 294 (454)
T 1jl5_A 226 ILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE 294 (454)
T ss_dssp CCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC
T ss_pred cCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC
Confidence 665 344 25566666666666666654 3322 2556666666666664 3322 25566666666666542 11
Q ss_pred cccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCC
Q 036729 661 WLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKL 740 (970)
Q Consensus 661 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 740 (970)
. .++|++|++++|++++. +. ..++|++|++++|++++ +|.. +++|++|++++|++++ +|. .+++|
T Consensus 295 ~---~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L 359 (454)
T 1jl5_A 295 L---PPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNL 359 (454)
T ss_dssp C---CTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTC
T ss_pred c---CCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhc
Confidence 1 14566666666666542 11 01356666666666654 3332 3556666666666653 333 34556
Q ss_pred cEEECccccccc--cCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCcc--ccCcccCCCCcCcEE
Q 036729 741 YELRLSENFFTG--SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG--QVPASLGKLTSLHVL 816 (970)
Q Consensus 741 ~~L~Ls~N~l~~--~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~--~~p~~l~~l~~L~~l 816 (970)
+.|++++|++++ .+|.+++. ++.|.+.|.+|.. +++|+.||+++|++++ .+|.+ ++.|
T Consensus 360 ~~L~L~~N~l~~l~~ip~~l~~---------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L 421 (454)
T 1jl5_A 360 KQLHVEYNPLREFPDIPESVED---------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDL 421 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCCE---------EECCC--------------------------------------------
T ss_pred cEEECCCCCCCcCCCChHHHHh---------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------Hhhe
Confidence 666666666665 45554432 2345555555542 3566666666666665 55543 3344
Q ss_pred ecCCCcccccCC
Q 036729 817 NLSNNHLQGQLP 828 (970)
Q Consensus 817 ~ls~N~l~g~~p 828 (970)
.+.+|.+.+.+|
T Consensus 422 ~~~~~~~~~~~~ 433 (454)
T 1jl5_A 422 RMNSERVVDPYE 433 (454)
T ss_dssp ------------
T ss_pred eCcCcccCCccc
Confidence 556666665555
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.1e-38 Score=362.77 Aligned_cols=374 Identities=21% Similarity=0.214 Sum_probs=222.4
Q ss_pred CCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCC-CcCCCCCCCCcEEEccCccCCccCCccccCCcccchhh
Q 036729 90 TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI-PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELA 168 (970)
Q Consensus 90 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 168 (970)
++|++|||++|.+++..|..++++++|++|++++|.+.+.+ |..+..+++|++|++++|.+.+..|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999998888888999999999999999887665 45688899999999999988877788888888888888
Q ss_pred ccccccccCCCcc--ccCCceeeEEEcCCCcCCCCCccc-ccCCcccccccccccccCCCCcccccCC--CCCcEEEccC
Q 036729 169 IAYCQLNGSIPVE--IGNLKHLTSLDLQMNKLSGLIPEA-IHGCEELQKFAASNNMLEGTIPSSIVLL--KSLQILNLAN 243 (970)
Q Consensus 169 L~~~~~~~~~p~~--l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~ 243 (970)
+++|++++..+.. ++++++|++|++++|++++..|.. +.++++|++|++++|.+++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 8888877655444 777777777777777777766654 5666666666666666666555555544 4555566655
Q ss_pred CcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCC---CCccEEEccCCcccC
Q 036729 244 NSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQL---KNLETLVLSDNAFTG 320 (970)
Q Consensus 244 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~ 320 (970)
|.+.+..+..+.. .....+..+++|++|++++|.+++..+..+... ++|+.|++++|...+
T Consensus 190 n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 190 ITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp CBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred Ccccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 5555433222110 000112233444444444444444333332221 344444444443322
Q ss_pred CCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCC
Q 036729 321 SIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIG 400 (970)
Q Consensus 321 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 400 (970)
... ..+.+....+..+..+ ..++|+.|++++|.+.+..|..++
T Consensus 254 ~~~---------------~~~~~~~~~~~~~~~~----------------------~~~~L~~L~l~~n~l~~~~~~~~~ 296 (455)
T 3v47_A 254 SSF---------------GHTNFKDPDNFTFKGL----------------------EASGVKTCDLSKSKIFALLKSVFS 296 (455)
T ss_dssp CCT---------------TCCSSCCCCTTTTGGG----------------------TTSCCCEEECCSSCCCEECTTTTT
T ss_pred ccc---------------chhhhccCcccccccc----------------------cccCceEEEecCccccccchhhcc
Confidence 100 0001111111111111 113444444444444444444455
Q ss_pred CcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEE
Q 036729 401 NLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVIL 480 (970)
Q Consensus 401 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 480 (970)
.+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..|..+++|++|
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 55555555555555555555555555555555555555555555555666666666666666665556666666666666
Q ss_pred eeccccCCCCCCCcccccccccEEeccCCcccCccC
Q 036729 481 QLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP 516 (970)
Q Consensus 481 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~ 516 (970)
++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 666666665555555666666666666666666655
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.2e-38 Score=357.90 Aligned_cols=411 Identities=25% Similarity=0.310 Sum_probs=270.2
Q ss_pred CCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccc-------------cccccCCcccccCCCCc
Q 036729 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEE-------------LTDLLLNNNSFTGSFPP 397 (970)
Q Consensus 331 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-------------L~~L~L~~n~l~~~~~~ 397 (970)
+.|+++++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+++ +++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4455555555555 455555556666666666666666666666666555 4888999998875 343
Q ss_pred CCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCc
Q 036729 398 EIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL 477 (970)
Q Consensus 398 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 477 (970)
. .++|++|++++|.+++ +|.. .++|++|++++|++++. +.. .++|++|++++|.+++ +| .++.+++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 2 3689999999999987 6643 48899999999998863 221 2689999999999997 66 59999999
Q ss_pred cEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcccc
Q 036729 478 VILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHN 557 (970)
Q Consensus 478 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 557 (970)
++|++++|++++ +|..+ .+|+.|++++|++++ +| .+..+++|+.|++++|.+++. |.. .++|+.|++++|
T Consensus 156 ~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n 225 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNN 225 (454)
T ss_dssp CEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSS
T ss_pred CEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCC
Confidence 999999999986 55543 599999999999998 45 589999999999999999873 332 358999999999
Q ss_pred ccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCccc
Q 036729 558 KFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ 637 (970)
Q Consensus 558 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 637 (970)
.++ .++.+..+++|+.|++++|++++ +|.. .++|+.|++++|++++ +|.. .++|++|++++|.+++. |.
T Consensus 226 ~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~- 294 (454)
T 1jl5_A 226 ILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE- 294 (454)
T ss_dssp CCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC-
T ss_pred cCC-cccccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC-
Confidence 998 56678899999999999999986 4432 4789999999999986 5543 47899999999999973 21
Q ss_pred CcCcCcccEEEccCCcccCCcccccccc-CccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccccccccc
Q 036729 638 LSKCAKLAHLLLSNNELTGTIPFWLGSL-QEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL 716 (970)
Q Consensus 638 l~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 716 (970)
+ .++|++|++++|++++. + .+ ++|++|++++|++++ +|.. +++|++|++++|++++ +|. .+++|
T Consensus 295 ~--~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L 359 (454)
T 1jl5_A 295 L--PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNL 359 (454)
T ss_dssp C--CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTC
T ss_pred c--CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhc
Confidence 1 26899999999999862 2 23 589999999999997 5654 5899999999999995 555 47899
Q ss_pred ceeccCCCcccc--ccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccc--cCCccccCCCCCCEE
Q 036729 717 NVLNLQRNSLSG--NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG--EIPPSLGSLLKLERL 792 (970)
Q Consensus 717 ~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g--~ip~~~~~l~~L~~L 792 (970)
++|++++|++++ .+|..+.+ ++.|.+.|.+|.. ++.|+. ||+++|.++| .+|.+ ++.|
T Consensus 360 ~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~-L~ls~N~l~~~~~iP~s------l~~L 421 (454)
T 1jl5_A 360 KQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQ-LHVETNPLREFPDIPES------VEDL 421 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------------------------------
T ss_pred cEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCE-EECCCCcCCccccchhh------Hhhe
Confidence 999999999998 67766543 3457788888874 467777 9999999998 67754 5667
Q ss_pred eCCCCcCccccCcccCCC
Q 036729 793 NISYNQLQGQVPASLGKL 810 (970)
Q Consensus 793 ~ls~N~l~~~~p~~l~~l 810 (970)
.+++|.+.+.+|......
T Consensus 422 ~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 422 RMNSERVVDPYEFAHETT 439 (454)
T ss_dssp ------------------
T ss_pred eCcCcccCCccccCHHHh
Confidence 889999998887665543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-36 Score=345.94 Aligned_cols=375 Identities=20% Similarity=0.217 Sum_probs=273.2
Q ss_pred cccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccc
Q 036729 381 LTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFG 460 (970)
Q Consensus 381 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 460 (970)
++..........+..+..++++++|++|++++|.+++. | .++.+++|++|++++|++++. | ++.+++|++|++++
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~ 94 (457)
T 3bz5_A 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDS 94 (457)
T ss_dssp HHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCS
T ss_pred HHHHHHHhcCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcC
Confidence 33333344444545555677888999999999988864 5 688888899999998888874 3 77888888888888
Q ss_pred cccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCC
Q 036729 461 NHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLP 540 (970)
Q Consensus 461 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 540 (970)
|.+++. + ++.+++|++|++++|.+++. + +..+++|+.|++++|++++. .+..+++|+.|++++|...+.+
T Consensus 95 N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~- 164 (457)
T 3bz5_A 95 NKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL- 164 (457)
T ss_dssp SCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-
T ss_pred CCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-
Confidence 888875 3 77888888888888888864 3 77888888888888888874 2667788888888888655544
Q ss_pred ccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCC
Q 036729 541 PSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTEL 620 (970)
Q Consensus 541 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 620 (970)
.+..+++|+.|++++|.+++. ++..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|
T Consensus 165 -~~~~l~~L~~L~ls~n~l~~l--~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L 235 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCCCC--CCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred -ccccCCcCCEEECCCCcccee--ccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence 366777788888888877763 266677777777777777764 26667777777777777776 44 6677777
Q ss_pred cEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCC
Q 036729 621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN 700 (970)
Q Consensus 621 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 700 (970)
++|++++|++++.. +..+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|
T Consensus 236 ~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 236 TYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHN 296 (457)
T ss_dssp SEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTC
T ss_pred CEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCC
Confidence 77777777777643 344566666666654 34567777887777766 467788888888888
Q ss_pred cCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCC
Q 036729 701 NLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIP 780 (970)
Q Consensus 701 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip 780 (970)
...+.+|. ..++|+.|++++| ++|+.|++++|++++. + ++.++.|+. ||+++|.++|
T Consensus 297 ~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~-L~l~~N~l~~--- 353 (457)
T 3bz5_A 297 TQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKS-LSCVNAHIQD--- 353 (457)
T ss_dssp TTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSE-EECCSSCCCB---
T ss_pred cccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcE-EECCCCCCCC---
Confidence 87776664 3345556655544 5688888888888873 3 777888887 8888888875
Q ss_pred ccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCCccc
Q 036729 781 PSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTF 831 (970)
Q Consensus 781 ~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~~~ 831 (970)
++.|+.|++++|.++|. ..+..|..+++++|+++|.+|..+
T Consensus 354 -----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 -----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp -----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred -----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 24566677888888876 245567778888888888888544
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.3e-36 Score=342.37 Aligned_cols=368 Identities=21% Similarity=0.196 Sum_probs=315.1
Q ss_pred cCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCc
Q 036729 366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPR 445 (970)
Q Consensus 366 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 445 (970)
...+..+..++.+++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. +
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~- 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D- 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence 34455566788999999999999999964 5 689999999999999999974 4 88999999999999999985 3
Q ss_pred ccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCC
Q 036729 446 ELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSEL 525 (970)
Q Consensus 446 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 525 (970)
+.++++|++|++++|.+++. + ++.+++|+.|++++|.+++. .+..+++|+.|++++|+..+.+ .+..+++|
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence 88999999999999999974 4 88999999999999999984 3788999999999999766665 47889999
Q ss_pred ceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCcc
Q 036729 526 YLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNH 605 (970)
Q Consensus 526 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 605 (970)
+.|++++|.+++. | +..+++|+.|++++|.+++. ++..+++|+.|++++|++++ +| +..+++|+.|++++|+
T Consensus 173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence 9999999999984 3 78899999999999999875 58889999999999999998 45 8889999999999999
Q ss_pred ccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCC
Q 036729 606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAE 685 (970)
Q Consensus 606 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 685 (970)
+++.. ++.+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|.+.+.+|.
T Consensus 245 l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~- 304 (457)
T 3bz5_A 245 LTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC- 304 (457)
T ss_dssp CSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-
T ss_pred CCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-
Confidence 99754 567788999998876 36678889999888877 56889999999999998888774
Q ss_pred CCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhH
Q 036729 686 IGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQ 765 (970)
Q Consensus 686 l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 765 (970)
..++|+.|++++| ++|++|++++|++++. + +..+++|+.|++++|++++ ++.|.
T Consensus 305 --~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~ 358 (457)
T 3bz5_A 305 --QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVG 358 (457)
T ss_dssp --TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGG
T ss_pred --CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccc
Confidence 3456666666655 6789999999999985 3 8889999999999999986 24555
Q ss_pred hhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCC
Q 036729 766 VILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGK 809 (970)
Q Consensus 766 ~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 809 (970)
. +++++|.++|. +++..|+.+++++|+++|.+|..+..
T Consensus 359 ~-L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 359 K-IPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp G-SSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred c-ccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 5 88999999987 45677888999999999999987654
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.8e-35 Score=335.85 Aligned_cols=347 Identities=28% Similarity=0.392 Sum_probs=240.2
Q ss_pred CCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEE
Q 036729 425 KLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQI 504 (970)
Q Consensus 425 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 504 (970)
.+++++.|++.++.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 45678888888887764 33 36778888888888888876544 7788888888888888876544 7777888888
Q ss_pred eccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCC
Q 036729 505 ALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSG 584 (970)
Q Consensus 505 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 584 (970)
++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|+.|+++ |.+.+ ..+
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~-~~~------------------- 172 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTD-LKP------------------- 172 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCC-CGG-------------------
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccC-chh-------------------
Confidence 888887776543 66677777777777766653 235666666666664 22221 112
Q ss_pred CCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccc
Q 036729 585 PIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGS 664 (970)
Q Consensus 585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~ 664 (970)
+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..
T Consensus 173 -----~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~ 241 (466)
T 1o6v_A 173 -----LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLAS 241 (466)
T ss_dssp -----GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred -----hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhc
Confidence 44455555555555554432 235566666666666666665443 55566666666666666643 24566
Q ss_pred cCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEE
Q 036729 665 LQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELR 744 (970)
Q Consensus 665 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 744 (970)
+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 6777777777777765544 6667777777777777765433 6667777777777777776544 66777777888
Q ss_pred CccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccc
Q 036729 745 LSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824 (970)
Q Consensus 745 Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 824 (970)
+++|++++..| +..++.|+. |++++|.+++. +.++++++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~-L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQR-LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCE-EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred CcCCcCCCchh--hccCccCCE-eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 88877776655 667777777 88888887765 467888899999999999988877 788889999999999888
Q ss_pred cc
Q 036729 825 GQ 826 (970)
Q Consensus 825 g~ 826 (970)
+.
T Consensus 389 ~~ 390 (466)
T 1o6v_A 389 NA 390 (466)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=339.11 Aligned_cols=325 Identities=21% Similarity=0.148 Sum_probs=258.8
Q ss_pred CCceEEccccccccCCCccccCCCCCcEEEccccccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceecc
Q 036729 524 ELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLA 602 (970)
Q Consensus 524 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls 602 (970)
.++.|++++|.+++..+..+..+++|++|++++|.+++..+ .+.++++|+.|++++|.+++..+..|..+++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 34444444444444444444444455555555554444322 34455555555666666555555567778888888888
Q ss_pred CccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCC
Q 036729 603 HNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTV 682 (970)
Q Consensus 603 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 682 (970)
+|.+++..|..|..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 88888777888888899999999999998888888899999999999999998877778889999999999999999888
Q ss_pred CCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhh
Q 036729 683 PAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLT 762 (970)
Q Consensus 683 p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 762 (970)
+..|..+++|++|++++|...+.+|.......+|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..++
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 88899999999999999988888887777777999999999999977777899999999999999999988888899999
Q ss_pred hhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCCccc--cCCCCcccC
Q 036729 763 ELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTF--SGFPLSSFL 840 (970)
Q Consensus 763 ~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~~~--~~~~~~~~~ 840 (970)
.|+. |++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.|.++..| .......+.
T Consensus 273 ~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~ 351 (477)
T 2id5_A 273 RLQE-IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN 351 (477)
T ss_dssp TCCE-EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCT
T ss_pred cCCE-EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccC
Confidence 9998 9999999999999999999999999999999999888889999999999999999999988322 222334566
Q ss_pred CCCCCCCCC
Q 036729 841 GNAKLCGPP 849 (970)
Q Consensus 841 ~n~~lc~~~ 849 (970)
++...|..|
T Consensus 352 ~~~~~C~~p 360 (477)
T 2id5_A 352 RQQPTCATP 360 (477)
T ss_dssp TCCCBEEES
T ss_pred ccCceeCCc
Confidence 777778654
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-34 Score=333.01 Aligned_cols=346 Identities=28% Similarity=0.367 Sum_probs=245.3
Q ss_pred CcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEE
Q 036729 401 NLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVIL 480 (970)
Q Consensus 401 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 480 (970)
.+++++.|++.++.+.. +| .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 46789999999999874 45 47889999999999999987654 8999999999999999997765 8999999999
Q ss_pred eeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccc
Q 036729 481 QLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFS 560 (970)
Q Consensus 481 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 560 (970)
++++|.+++..+ +..+++|+.|++++|.+.+.. .+..+++|+.|+++ |.+.+.. .+..+++|+.|++++|.++
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 999999987643 889999999999999998743 48899999999996 4554432 3788899999999988876
Q ss_pred cccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcC
Q 036729 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK 640 (970)
Q Consensus 561 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 640 (970)
+. +.+..+++|+.|++++|.+++..+ ++.+++|++|++++|.+++. +.+..
T Consensus 191 ~~-~~l~~l~~L~~L~l~~n~l~~~~~--------------------------~~~l~~L~~L~l~~n~l~~~--~~l~~ 241 (466)
T 1o6v_A 191 DI-SVLAKLTNLESLIATNNQISDITP--------------------------LGILTNLDELSLNGNQLKDI--GTLAS 241 (466)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred CC-hhhccCCCCCEEEecCCccccccc--------------------------ccccCCCCEEECCCCCcccc--hhhhc
Confidence 42 234444455555555554443322 44455555555555555532 23455
Q ss_pred cCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceec
Q 036729 641 CAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLN 720 (970)
Q Consensus 641 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 720 (970)
+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 5556666666665555433 5555666666666666655433 5556666666666666665433 55666666666
Q ss_pred cCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036729 721 LQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ 800 (970)
Q Consensus 721 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~ 800 (970)
+++|++++..| +..+++|+.|++++|++++. ..+..++.|+. |++++|.+++.+| +..+++|+.|++++|.++
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~-L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW-LSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE-EECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCE-EeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 66666666554 55667777777777777654 35666777776 7777777776665 677778888888888777
Q ss_pred c
Q 036729 801 G 801 (970)
Q Consensus 801 ~ 801 (970)
+
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 6
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=322.94 Aligned_cols=323 Identities=21% Similarity=0.219 Sum_probs=230.8
Q ss_pred CeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccc
Q 036729 406 ENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485 (970)
Q Consensus 406 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 485 (970)
+.++.+++.++ .+|..+. +.++.|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 35555555555 3443332 45666666666666555555666666666666666665555555556666666666666
Q ss_pred cCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCC
Q 036729 486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP 565 (970)
Q Consensus 486 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 565 (970)
.+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+. .
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------------~ 147 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-----------------------A 147 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-----------------------S
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh-----------------------h
Confidence 55544444455555555555555555554444444444444444444444443333 3
Q ss_pred CCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCccc
Q 036729 566 LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645 (970)
Q Consensus 566 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~ 645 (970)
+.++++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+.++.......+|+
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 44555566666666666655666777888888888888888887777888889999999998888777777766677899
Q ss_pred EEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCc
Q 036729 646 HLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNS 725 (970)
Q Consensus 646 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 725 (970)
+|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|+
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 99999999887666778889999999999999998888888899999999999999998888889999999999999999
Q ss_pred cccccchhhhcccCCcEEECccccccccC
Q 036729 726 LSGNIPSTIQQCKKLYELRLSENFFTGSI 754 (970)
Q Consensus 726 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i 754 (970)
+++..+..|..+++|+.|++++|++++..
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 99888888888999999999999988653
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.4e-34 Score=313.76 Aligned_cols=268 Identities=23% Similarity=0.307 Sum_probs=183.3
Q ss_pred hcCChHHHHHHHHHHhhC-CCCCCCCCCC----CCCCCCCCccceEecC--------CCCCEEEEECCCCCCccccccCc
Q 036729 20 LGGISTDSFWLLRIKQEL-VDPTGILENW----SARAHMCSWHGVTCSD--------DQKHVVGLNLSSSGLSGSISRDF 86 (970)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~~~~~~~l 86 (970)
+++..+|++||++||+++ .++.+.+.+| ....++|.|.|+.|.. ...+|+.|+|+++.++ .+|+.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 346678999999999988 4566666788 4567899999999952 3468999999999988 778888
Q ss_pred cCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccC------
Q 036729 87 LNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGN------ 160 (970)
Q Consensus 87 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~------ 160 (970)
.++++|++|+|++|.++ .+|..++++++|++|+|++|.+. .+|..++.+++|++|++++|.+.+.+|..++.
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 88999999999999988 78888899999999999999888 78888888999999999988888888876654
Q ss_pred ---CcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCc
Q 036729 161 ---LTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQ 237 (970)
Q Consensus 161 ---l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 237 (970)
+++|++|++++|+++ .+|..++++++|++|++++|++++ +|..+..+++|+
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-------------------------l~~~l~~l~~L~ 232 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-------------------------LGPAIHHLPKLE 232 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-------------------------CCGGGGGCTTCC
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-------------------------CchhhccCCCCC
Confidence 555555555555554 444445555555555555555543 333444555555
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCC
Q 036729 238 ILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDN 316 (970)
Q Consensus 238 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 316 (970)
+|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|+.+++..+
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555444
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.1e-34 Score=311.17 Aligned_cols=255 Identities=32% Similarity=0.576 Sum_probs=154.8
Q ss_pred CCceeccCccccC--CCCcccccCCCCcEEEccC-CcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEE
Q 036729 596 LSRLRLAHNHLTG--NIPSEFGKLTELNFLDLSF-NSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD 672 (970)
Q Consensus 596 L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 672 (970)
++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 4444444444444 4444555555555555552 555555555555555555555555555555555555555555555
Q ss_pred cccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccccccc-ccceeccCCCccccccchhhhcccCCcEEECcccccc
Q 036729 673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLT-ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT 751 (970)
Q Consensus 673 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 751 (970)
+++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|.++
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 555555555555555555555555555555555555555555 566666666666655666665555 666666666666
Q ss_pred ccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCCc--
Q 036729 752 GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPL-- 829 (970)
Q Consensus 752 ~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~-- 829 (970)
+.+|..+..++.|+. |++++|.+++.+|. +..+++|++|++++|+++|.+|..+..+++|++|++++|+++|.+|.
T Consensus 211 ~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 211 GDASVLFGSDKNTQK-IHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp ECCGGGCCTTSCCSE-EECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred CcCCHHHhcCCCCCE-EECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 666666666666665 66666666655554 66677777777777777777777777777777777777777777773
Q ss_pred cccCCCCcccCCCCCCCCCCCCCC
Q 036729 830 TFSGFPLSSFLGNAKLCGPPLLSC 853 (970)
Q Consensus 830 ~~~~~~~~~~~~n~~lc~~~~~~c 853 (970)
.+..+....+.+|+.+||.|...|
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTSSCC
T ss_pred cccccChHHhcCCCCccCCCCCCC
Confidence 334444556777888888776666
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.3e-33 Score=329.91 Aligned_cols=334 Identities=22% Similarity=0.225 Sum_probs=239.3
Q ss_pred CCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEE
Q 036729 474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIIN 553 (970)
Q Consensus 474 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 553 (970)
+.+++.+++++|.+....+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45566666666666554444455566666666666666655555555555555555555555555554445555555554
Q ss_pred ccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccC
Q 036729 554 FSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ 633 (970)
Q Consensus 554 ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 633 (970)
+++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++.
T Consensus 130 -----------------------L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 130 -----------------------LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp -----------------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred -----------------------eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 445554444444456666677777777777766666677777777777777777654
Q ss_pred CcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccc
Q 036729 634 IAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNL 713 (970)
Q Consensus 634 ~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 713 (970)
. +..+++|+.|++++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..+
T Consensus 187 ~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l 253 (597)
T 3oja_B 187 D---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNY 253 (597)
T ss_dssp C---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGC
T ss_pred C---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccC
Confidence 2 4456667777777777654 234467788888888877543322 35788888888888763 678888
Q ss_pred cccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEe
Q 036729 714 TALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLN 793 (970)
Q Consensus 714 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ 793 (970)
++|+.|++++|.+++..|..|..+++|+.|+|++|.+++ +|..+..++.|+. |+|++|.++ .+|..++.+++|+.|+
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~-L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV-LDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCE-EECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcE-EECCCCCCC-ccCcccccCCCCCEEE
Confidence 889999999999888888888889999999999998886 5777777888888 999999998 6788889999999999
Q ss_pred CCCCcCccccCcccCCCCcCcEEecCCCcccccCC-ccccCCCCcccCCCCCCCCCC
Q 036729 794 ISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP-LTFSGFPLSSFLGNAKLCGPP 849 (970)
Q Consensus 794 ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p-~~~~~~~~~~~~~n~~lc~~~ 849 (970)
|++|.+++.. +..+++|+.|++++|++.|.++ ..+..+....+.++...|+.+
T Consensus 331 L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 331 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcc
Confidence 9999998753 6678899999999999999877 556667777788899899864
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-32 Score=308.15 Aligned_cols=334 Identities=22% Similarity=0.229 Sum_probs=230.4
Q ss_pred CCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEE
Q 036729 474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIIN 553 (970)
Q Consensus 474 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 553 (970)
+++++.+++++|.+....+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45566666666665544333455566666666666666555555555555555555555555555555455555555555
Q ss_pred ccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccC
Q 036729 554 FSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ 633 (970)
Q Consensus 554 ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 633 (970)
+++| .++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 124 L~~n-----------------------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 124 LERN-----------------------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCSS-----------------------CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCC-----------------------ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 5554 44433333445666666666666666666666666777777777777776654
Q ss_pred CcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccc
Q 036729 634 IAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNL 713 (970)
Q Consensus 634 ~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 713 (970)
.+..+++|+.|++++|.+++ +...++|++|++++|.+..... . ..++|++|++++|.+++. ..+..+
T Consensus 181 ---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~-~--~~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 181 ---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp ---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC-C--CCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred ---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc-c--ccccccEEECCCCCCccc--HHHcCC
Confidence 24455667777777776653 2334567778888887775422 2 246788888888888764 567788
Q ss_pred cccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEe
Q 036729 714 TALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLN 793 (970)
Q Consensus 714 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ 793 (970)
++|++|++++|.+++..|..+..+++|+.|++++|++++ +|..+..++.|+. |++++|.++ .+|..++.+++|++|+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~-L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV-LDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCE-EECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCE-EECCCCcce-ecCccccccCcCCEEE
Confidence 888888888888888888888888888888888888885 5666677888887 899999888 5677788899999999
Q ss_pred CCCCcCccccCcccCCCCcCcEEecCCCcccccCC-ccccCCCCcccCCCCCCCCCC
Q 036729 794 ISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP-LTFSGFPLSSFLGNAKLCGPP 849 (970)
Q Consensus 794 ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p-~~~~~~~~~~~~~n~~lc~~~ 849 (970)
+++|++++. | +..+++|++|++++|++.|... ..+..+....+.+++..|..+
T Consensus 325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceeccc
Confidence 999999865 3 6778899999999999999876 445556666677777777654
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-32 Score=310.27 Aligned_cols=350 Identities=19% Similarity=0.174 Sum_probs=210.3
Q ss_pred CCCCCCCCCCCC-ccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecC
Q 036729 44 LENWSARAHMCS-WHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLY 122 (970)
Q Consensus 44 ~~~w~~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls 122 (970)
+++|....+||. |.++.|.....++ ............-..++++++|++++|.+....+..+..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 567987777875 5555553211111 1111111122223456889999999998875545557889999999999
Q ss_pred CCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCC
Q 036729 123 SNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLI 202 (970)
Q Consensus 123 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~ 202 (970)
+|.+.+..|..++.+++|++|++++|.+.+..|..++++++|++|++++|+++...+..++++++|++|++++|++++..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99988777778889999999999999888777777888888888888888877444444677888888888888877777
Q ss_pred cccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCC
Q 036729 203 PEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLA 282 (970)
Q Consensus 203 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 282 (970)
+..+.++++|++|++++|.+++. .+..+++|++|++++|.+++. ...++|++|++++|.+..... ...+
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~ 226 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG---PVNV 226 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCS
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeeccc---cccc
Confidence 77777777777777777776643 245566677777777666532 223456666666666554311 1234
Q ss_pred CccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeC
Q 036729 283 QLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDL 362 (970)
Q Consensus 283 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 362 (970)
+|++|++++|.+++. ..+..+++|++|++++|.+. +..+..+..+++|++|++
T Consensus 227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~-------------------------~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE-------------------------KIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-------------------------EEESGGGTTCSSCCEEEC
T ss_pred cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC-------------------------CcChhHccccccCCEEEC
Confidence 555555555555543 23444555555555555544 444444444555555555
Q ss_pred CCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCC
Q 036729 363 SDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSG 441 (970)
Q Consensus 363 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 441 (970)
++|++++ +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.. + +..+++|+.|++++|++..
T Consensus 280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 5555543 2333344555555555555554 3344455555566666666555532 2 4455566666666665543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-32 Score=321.74 Aligned_cols=348 Identities=19% Similarity=0.193 Sum_probs=212.8
Q ss_pred CCCCCCCCCCCCC----ccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcE
Q 036729 43 ILENWSARAHMCS----WHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRI 118 (970)
Q Consensus 43 ~~~~w~~~~~~c~----w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~ 118 (970)
.+++|....+||. |.++.|+. + ++-...... ....-..+++++.|++++|.+....+..++.+++|++
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~---~---i~~~~~~~~--~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~ 79 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDV---H---IDMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSC---E---ECSSCCCCE--ESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSE
T ss_pred cccCCCCCCcCcccCcCceeEecCc---e---ecccccccc--cCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcE
Confidence 4668987777875 66555541 1 111111111 1112234678889999988887665666788899999
Q ss_pred eecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcC
Q 036729 119 LLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKL 198 (970)
Q Consensus 119 L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i 198 (970)
|+|++|.+.+..|..++.+++|++|+|++|.+.+..|..++++++|++|++++|.+++..+..++++++|++|++++|.+
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 99999988877777888888888888888888777777777888888888888877755454567777777777777777
Q ss_pred CCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccc
Q 036729 199 SGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSEL 278 (970)
Q Consensus 199 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l 278 (970)
++..|..|.++++|++|++++|.+++.. +..+++|+.|++++|.+++. ...++|+.|++++|.+....+..
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~- 230 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV- 230 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC-
T ss_pred CCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccccc-
Confidence 7777767777777777777777666432 34456666666666665532 23345566666666554332211
Q ss_pred cCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCC
Q 036729 279 NKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQ 358 (970)
Q Consensus 279 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 358 (970)
.++|+.|++++|.+++. ..+..+++|+.|++++|. +.+..|..+..+++|+
T Consensus 231 --~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~-------------------------l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 231 --NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE-------------------------LEKIMYHPFVKMQRLE 281 (597)
T ss_dssp --CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-------------------------CCEEESGGGTTCSSCC
T ss_pred --CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCc-------------------------cCCCCHHHhcCccCCC
Confidence 13455555555555442 334444444444444444 4444444445555555
Q ss_pred EEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEccccc
Q 036729 359 QLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQ 438 (970)
Q Consensus 359 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 438 (970)
.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++. .+..+++|+.|++++|+
T Consensus 282 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 282 RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSC
T ss_pred EEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCC
Confidence 55555555553 2344445556666666666555 3455555566666666666666543 14555666666666666
Q ss_pred CCC
Q 036729 439 MSG 441 (970)
Q Consensus 439 l~~ 441 (970)
+.+
T Consensus 357 ~~~ 359 (597)
T 3oja_B 357 WDC 359 (597)
T ss_dssp EEH
T ss_pred CCC
Confidence 553
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=2.4e-31 Score=294.35 Aligned_cols=307 Identities=21% Similarity=0.349 Sum_probs=180.2
Q ss_pred ccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCc
Q 036729 471 MGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLR 550 (970)
Q Consensus 471 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 550 (970)
+..+++|+.|++++|.+... + .+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++.. ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 44567778888887777643 3 36677777777777777765444 66667777777777666543 2455666666
Q ss_pred EEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcC
Q 036729 551 IINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSF 630 (970)
Q Consensus 551 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 630 (970)
+|++++|.+.+.. .+..+++|+.|++++|.. ...++ .+..+++|++|++++|.+
T Consensus 114 ~L~l~~n~i~~~~-~~~~l~~L~~L~l~~n~~------------------------~~~~~-~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 114 ELYLNEDNISDIS-PLANLTKMYSLNLGANHN------------------------LSDLS-PLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp EEECTTSCCCCCG-GGTTCTTCCEEECTTCTT------------------------CCCCG-GGTTCTTCCEEECCSSCC
T ss_pred EEECcCCcccCch-hhccCCceeEEECCCCCC------------------------ccccc-chhhCCCCcEEEecCCCc
Confidence 6666666555322 244444455555554433 32222 245555555555555555
Q ss_pred ccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccc
Q 036729 631 TGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI 710 (970)
Q Consensus 631 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l 710 (970)
.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 43322 4455555555555555554322 4555555555555555554433 4555556666666665554332 5
Q ss_pred ccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCC
Q 036729 711 GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLE 790 (970)
Q Consensus 711 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~ 790 (970)
..+++|++|++++|.+++. +.+..+++|+.|++++|++++. ..+..++.|+. |++++|.+++..|..++.+++|+
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS-LFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE-EECCSSCCCGGGHHHHHTCTTCS
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE-EECcCCcCCCcChhHhhccccCC
Confidence 5556666666666665543 3455666666666666666643 34566666666 66666666666666677777777
Q ss_pred EEeCCCCcCccccCcccCCCCcCcEEecCCCccc
Q 036729 791 RLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824 (970)
Q Consensus 791 ~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 824 (970)
+|++++|++++..| +..+++|++||+++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777776655 666777777777777764
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.9e-31 Score=290.61 Aligned_cols=308 Identities=25% Similarity=0.352 Sum_probs=205.4
Q ss_pred ccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCC
Q 036729 446 ELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSEL 525 (970)
Q Consensus 446 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 525 (970)
.+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. ..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 355789999999999999854 3 48889999999999999986544 88999999999999999874 368999999
Q ss_pred ceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCcc
Q 036729 526 YLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNH 605 (970)
Q Consensus 526 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 605 (970)
+.|++++|.+.+..+ +..+++|+.|++++|......+.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 999999999987644 889999999999999776666667777777777777777654332 4555555555555555
Q ss_pred ccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCC
Q 036729 606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAE 685 (970)
Q Consensus 606 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 685 (970)
+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. .+
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~------------------------~~-- 238 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL------------------------SP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC------------------------GG--
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC------------------------cc--
Confidence 543221 4455555555555555543322 44444455555555544433 22
Q ss_pred CCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhH
Q 036729 686 IGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQ 765 (970)
Q Consensus 686 l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 765 (970)
+..+++|++|++++|.+++. +.+..+++|++|++++|++++. ..+..+++|+.|++++|++++..|..++.++.|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 44455555555555554432 2344555555555555555543 2355566666666666666666666666666666
Q ss_pred hhhhCCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036729 766 VILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ 800 (970)
Q Consensus 766 ~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~ 800 (970)
. |++++|.+++..| ++.+++|++||+++|.++
T Consensus 315 ~-L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 T-LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp E-EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred E-EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 5 6666666665544 667777777777777764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.9e-29 Score=275.29 Aligned_cols=266 Identities=22% Similarity=0.269 Sum_probs=182.8
Q ss_pred CCcEEEccccccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEcc
Q 036729 548 KLRIINFSHNKFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLS 626 (970)
Q Consensus 548 ~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 626 (970)
+++.|++++|.+++..+ .+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 44555555555544332 3455555555555555555555666666667777777777666 3444443 677777777
Q ss_pred CCcCccCCcccCcCcCcccEEEccCCccc--CCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcc
Q 036729 627 FNSFTGQIAPQLSKCAKLAHLLLSNNELT--GTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG 704 (970)
Q Consensus 627 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 704 (970)
+|.+++..+..+.++++|++|++++|.++ +..|..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc
Confidence 77777666666777777777777777774 3556666666 77777777777775 444333 677777888887777
Q ss_pred cCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCcccc
Q 036729 705 KIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLG 784 (970)
Q Consensus 705 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~ 784 (970)
..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..++.|+. |++++|.+++..+..|.
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~-L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV-VYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE-EECCSSCCCBCCTTSSS
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE-EECCCCCCCccChhHcc
Confidence 77777777788888888888887777777777888888888888877 67777777778877 88888888776666665
Q ss_pred C------CCCCCEEeCCCCcCc--cccCcccCCCCcCcEEecCCCc
Q 036729 785 S------LLKLERLNISYNQLQ--GQVPASLGKLTSLHVLNLSNNH 822 (970)
Q Consensus 785 ~------l~~L~~L~ls~N~l~--~~~p~~l~~l~~L~~l~ls~N~ 822 (970)
. ...|+.|++++|.+. +..|..+..++.|+.+++++|.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4 356888888888887 6677778888888888888774
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1e-28 Score=270.86 Aligned_cols=247 Identities=21% Similarity=0.263 Sum_probs=148.7
Q ss_pred ccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECC
Q 036729 499 KRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578 (970)
Q Consensus 499 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~ 578 (970)
+.++.|++++|.+++..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|.++.....+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 344555555555554444445555555555555555555555555555666666666665543222221 466666666
Q ss_pred CCCCCCCCCcccccCcCCCceeccCcccc--CCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccC
Q 036729 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLT--GNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTG 656 (970)
Q Consensus 579 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 656 (970)
+|.+++..+..+..+++|+.|++++|.+. +..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence 66666666666666777777777777664 2556666777777777777777664 333332 567777777777666
Q ss_pred CccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhc
Q 036729 657 TIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQ 736 (970)
Q Consensus 657 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 736 (970)
..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 66666666677777777777766666556666666666666666666 45556666666666666666666555554432
Q ss_pred ------ccCCcEEECcccccc
Q 036729 737 ------CKKLYELRLSENFFT 751 (970)
Q Consensus 737 ------l~~L~~L~Ls~N~l~ 751 (970)
...++.|++++|++.
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSC
T ss_pred cccccccccccceEeecCccc
Confidence 244555555555543
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=9.4e-33 Score=318.65 Aligned_cols=374 Identities=20% Similarity=0.177 Sum_probs=204.6
Q ss_pred CCCEEEcccccCCCcCCcc-cccCCCCCEEeccccccCC----cccccccCCCCccEEeeccccCCCCCCCccccccccc
Q 036729 428 TLSAIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHFSG----SIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQ 502 (970)
Q Consensus 428 ~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 502 (970)
+|++|++++|+++...... +..+++|++|++++|.++. .++..+..+++|++|++++|.+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-------------- 69 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-------------- 69 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--------------
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--------------
Confidence 4455555555554332221 4445555555555555543 12333444455555555555443
Q ss_pred EEeccCCcccCccCcch-hcCC----CCceEEcccccccc----CCCccccCCCCCcEEEccccccccccC------CCC
Q 036729 503 QIALADNKLSGSVPLTF-RFLS----ELYLITLYNNSFKG----PLPPSLFQLKKLRIINFSHNKFSGSIY------PLT 567 (970)
Q Consensus 503 ~L~Ls~n~l~~~~~~~~-~~l~----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~------~~~ 567 (970)
+..+..+ ..++ +|+.|++++|.++. .++..+..+++|++|++++|.+++... ...
T Consensus 70 ----------~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 139 (461)
T 1z7x_W 70 ----------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139 (461)
T ss_dssp ----------HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred ----------hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence 3222211 1222 35555555554442 234445555556666666665543211 012
Q ss_pred CCCcccEEECCCCCCCCCC----CcccccCcCCCceeccCccccCCCCcccc-----cCCCCcEEEccCCcCccC----C
Q 036729 568 GSNSLTALDLTNNSFSGPI----PSELAMSRNLSRLRLAHNHLTGNIPSEFG-----KLTELNFLDLSFNSFTGQ----I 634 (970)
Q Consensus 568 ~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~~----~ 634 (970)
..++|++|++++|.+++.. +..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. +
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 2345666666666665432 44455566777777777766543333332 245677777777777653 3
Q ss_pred cccCcCcCcccEEEccCCcccCCc-----cccccccCccceEEcccCcCcCC----CCCCCCCCCcceEEEccCCcCccc
Q 036729 635 APQLSKCAKLAHLLLSNNELTGTI-----PFWLGSLQEIGELDLSSNNFNGT----VPAEIGNCSKLLKLSLRGNNLSGK 705 (970)
Q Consensus 635 ~~~l~~~~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ 705 (970)
+..+..+++|++|++++|.+++.. +..+..+++|++|++++|++++. ++..+..+++|++|++++|.+++.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 455566677777777777665432 22223466777777777776643 344555667777777777776544
Q ss_pred CCcccccc-----cccceeccCCCccccc----cchhhhcccCCcEEECccccccccCchhhhh-----hhhhHhhhhCC
Q 036729 706 IPPEIGNL-----TALNVLNLQRNSLSGN----IPSTIQQCKKLYELRLSENFFTGSIPADLGR-----LTELQVILDLS 771 (970)
Q Consensus 706 ~~~~l~~l-----~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~~L~ls 771 (970)
.+..+... ++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .+.|+. |+++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~-L~L~ 378 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV-LWLA 378 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE-EECT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE-EECC
Confidence 33333322 5677777777777654 3455566677777777777776655554443 446666 7777
Q ss_pred CCcccc----cCCccccCCCCCCEEeCCCCcCccccCcccC-----CCCcCcEEecCCCccccc
Q 036729 772 KNNFSG----EIPPSLGSLLKLERLNISYNQLQGQVPASLG-----KLTSLHVLNLSNNHLQGQ 826 (970)
Q Consensus 772 ~N~l~g----~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~-----~l~~L~~l~ls~N~l~g~ 826 (970)
+|.+++ .+|..+..+++|++||+++|++++.-...+. ....|+.|++.++.+...
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 777765 5666666677777777777777654111111 123455555555554443
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.8e-28 Score=269.06 Aligned_cols=288 Identities=22% Similarity=0.262 Sum_probs=178.5
Q ss_pred CCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeec
Q 036729 404 KLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLR 483 (970)
Q Consensus 404 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 483 (970)
+++.++++++.++ .+|..+ .++++.|++++|.+.+..+..+.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4556666666554 344333 2456666666666665555566666666666666666666666666666666666666
Q ss_pred cccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEcccccccc--CCCccccCCCCCcEEEcccccccc
Q 036729 484 QNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKG--PLPPSLFQLKKLRIINFSHNKFSG 561 (970)
Q Consensus 484 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~ 561 (970)
+|.++. +|..+. ++|+.|++++|.+.+..+..|..+++|+.|++++|.++. ..+..+..+ +|+.|++++|.+++
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 666653 333332 566666666666665555556666666666666665542 344444444 55555555555443
Q ss_pred ccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCc
Q 036729 562 SIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKC 641 (970)
Q Consensus 562 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~ 641 (970)
+|..+. ++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+
T Consensus 187 ------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 187 ------------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp ------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred ------------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 222222 456666666666666666666667777777777777766666666667
Q ss_pred CcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCC------CCcceEEEccCCcCc--ccCCcccccc
Q 036729 642 AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGN------CSKLLKLSLRGNNLS--GKIPPEIGNL 713 (970)
Q Consensus 642 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~--~~~~~~l~~l 713 (970)
++|++|++++|+++ .+|.++..+++|++|++++|++++..+..|.. ...|+.|++++|++. +..|..+..+
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 77777777777766 55666777777777777777777665555544 356788888888877 5566778888
Q ss_pred cccceeccCCCc
Q 036729 714 TALNVLNLQRNS 725 (970)
Q Consensus 714 ~~L~~L~L~~N~ 725 (970)
++|+.+++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 888888888774
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4e-28 Score=266.12 Aligned_cols=289 Identities=22% Similarity=0.275 Sum_probs=174.8
Q ss_pred CCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeec
Q 036729 404 KLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLR 483 (970)
Q Consensus 404 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 483 (970)
+++.++++++.++ .+|..+. +.++.|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555554 2333222 455666666666665555556666666666666666666656666666666666666
Q ss_pred cccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEcccccccc--CCCccccCCCCCcEEEcccccccc
Q 036729 484 QNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKG--PLPPSLFQLKKLRIINFSHNKFSG 561 (970)
Q Consensus 484 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~ 561 (970)
+|.++. +|..+. ++|+.|++++|.+++..+..|..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.
T Consensus 109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 666653 333332 567777777777766666666667777777777766643 455566666666666666666553
Q ss_pred ccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCc
Q 036729 562 SIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKC 641 (970)
Q Consensus 562 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~ 641 (970)
. |..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+
T Consensus 186 l------------------------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 186 I------------------------PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp C------------------------CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred C------------------------Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 2 11111 445555555555555555566666666666666666666555566666
Q ss_pred CcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCC------CCcceEEEccCCcCcc--cCCcccccc
Q 036729 642 AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGN------CSKLLKLSLRGNNLSG--KIPPEIGNL 713 (970)
Q Consensus 642 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~~--~~~~~l~~l 713 (970)
++|++|++++|+++ .+|.++..+++|++|++++|++++..+..|.. .+.++.|++++|.+.. ..|..+..+
T Consensus 240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence 66666666666666 45556666666666667666666555555532 3667788888887753 445677778
Q ss_pred cccceeccCCCc
Q 036729 714 TALNVLNLQRNS 725 (970)
Q Consensus 714 ~~L~~L~L~~N~ 725 (970)
.+++.+++++|+
T Consensus 319 ~~l~~l~L~~N~ 330 (330)
T 1xku_A 319 YVRAAVQLGNYK 330 (330)
T ss_dssp CCGGGEEC----
T ss_pred cceeEEEecccC
Confidence 888888888774
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-31 Score=309.78 Aligned_cols=351 Identities=21% Similarity=0.194 Sum_probs=274.8
Q ss_pred CCccEEeeccccCCCCCCC-cccccccccEEeccCCcccCc----cCcchhcCCCCceEEccccccccCCCcccc-CCC-
Q 036729 475 KNLVILQLRQNDLSGPIPA-SLGYCKRLQQIALADNKLSGS----VPLTFRFLSELYLITLYNNSFKGPLPPSLF-QLK- 547 (970)
Q Consensus 475 ~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~- 547 (970)
++|+.|++++|+++..... .+..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+....+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3456666666665533222 255667777777777776643 456677789999999999998765443332 344
Q ss_pred ---CCcEEEccccccccc-----cCCCCCCCcccEEECCCCCCCCCCCcccc-----cCcCCCceeccCccccCCC----
Q 036729 548 ---KLRIINFSHNKFSGS-----IYPLTGSNSLTALDLTNNSFSGPIPSELA-----MSRNLSRLRLAHNHLTGNI---- 610 (970)
Q Consensus 548 ---~L~~L~ls~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~Ls~n~l~~~~---- 610 (970)
+|++|++++|.++.. ...+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 799999999998842 23678889999999999998764444333 2567999999999998643
Q ss_pred CcccccCCCCcEEEccCCcCccCCcccCc-----CcCcccEEEccCCcccCC----ccccccccCccceEEcccCcCcCC
Q 036729 611 PSEFGKLTELNFLDLSFNSFTGQIAPQLS-----KCAKLAHLLLSNNELTGT----IPFWLGSLQEIGELDLSSNNFNGT 681 (970)
Q Consensus 611 p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-----~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 681 (970)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|++.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 55677889999999999998865444443 256899999999999875 577788899999999999998753
Q ss_pred C-----CCCCCCCCcceEEEccCCcCccc----CCcccccccccceeccCCCccccccchhhhcc-----cCCcEEECcc
Q 036729 682 V-----PAEIGNCSKLLKLSLRGNNLSGK----IPPEIGNLTALNVLNLQRNSLSGNIPSTIQQC-----KKLYELRLSE 747 (970)
Q Consensus 682 ~-----p~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~Ls~ 747 (970)
. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+++..+..+... ++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 23344689999999999999864 56667789999999999999987666555443 6999999999
Q ss_pred cccccc----CchhhhhhhhhHhhhhCCCCcccccCCccccC-----CCCCCEEeCCCCcCcc----ccCcccCCCCcCc
Q 036729 748 NFFTGS----IPADLGRLTELQVILDLSKNNFSGEIPPSLGS-----LLKLERLNISYNQLQG----QVPASLGKLTSLH 814 (970)
Q Consensus 748 N~l~~~----ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~-----l~~L~~L~ls~N~l~~----~~p~~l~~l~~L~ 814 (970)
|.+++. +|..+..++.|+. |++++|.+++..+..+.. .++|++|++++|++++ .+|..+..+++|+
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~-L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLE-LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCE-EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCchHHHHHHHHHHhhCCCccE-EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 999976 5677778899998 999999998766655543 6799999999999997 8899999999999
Q ss_pred EEecCCCccccc
Q 036729 815 VLNLSNNHLQGQ 826 (970)
Q Consensus 815 ~l~ls~N~l~g~ 826 (970)
+||+++|++++.
T Consensus 402 ~L~l~~N~i~~~ 413 (461)
T 1z7x_W 402 ELDLSNNCLGDA 413 (461)
T ss_dssp EEECCSSSCCHH
T ss_pred EEECCCCCCCHH
Confidence 999999999875
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=8.8e-32 Score=321.07 Aligned_cols=429 Identities=16% Similarity=0.141 Sum_probs=248.6
Q ss_pred CCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCC---CCCCCcccc------------CCCCCc
Q 036729 53 MCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSL---TGLIPSELG------------QLQNLR 117 (970)
Q Consensus 53 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~---~~~~p~~l~------------~l~~L~ 117 (970)
|++|.++.+.. .+ .+.+.+ .....++..+..+++|++|+|+++.. .+.+|..++ .+++|+
T Consensus 41 ck~W~~~~~~~--~~--~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 115 (592)
T 3ogk_B 41 CRRWFKIDSET--RE--HVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115 (592)
T ss_dssp CHHHHHHHHHH--CC--EEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred hHHHHHhhhcc--cc--EEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence 44799986531 12 222222 22233344566788899999987642 123333222 688888
Q ss_pred EeecCCCcCcCCCCcCCCCC--CCCcEEEccCccC-Cc-cCCccccCCcccchhhccccccccC----CCccccCCceee
Q 036729 118 ILLLYSNSFSGKIPPEIGFL--NKLQVLRIGDNLL-WG-EIPPHIGNLTELRELAIAYCQLNGS----IPVEIGNLKHLT 189 (970)
Q Consensus 118 ~L~Ls~n~~~~~~p~~l~~l--~~L~~L~L~~n~~-~~-~~p~~l~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~ 189 (970)
+|+|++|.+++..+..++.. .+|++|++++|.. .. .++....++++|++|++++|.+++. ++..+..+++|+
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~ 195 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCC
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCcc
Confidence 89888888776655555553 3488888888752 11 1223334678888888888887655 333456678888
Q ss_pred EEEcCCCcCCCCC----cccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCc---cccCccccCCCCCCE
Q 036729 190 SLDLQMNKLSGLI----PEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS---GSIPVELSHLFNLRY 262 (970)
Q Consensus 190 ~L~Ls~n~i~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~ 262 (970)
+|++++|.+++.. +..+.++++|++|++++|.+.+ ++..+..+++|++|+++.+... +..+..+..+++|+.
T Consensus 196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~ 274 (592)
T 3ogk_B 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274 (592)
T ss_dssp EEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCE
T ss_pred EEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccc
Confidence 8888888877433 3344577888888888877774 5677777888888888754322 233445667778888
Q ss_pred EEccCccccccCCccccCCCCccEEECcCCcCccccc-cccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccC-
Q 036729 263 LNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSIS-LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR- 340 (970)
Q Consensus 263 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~- 340 (970)
|+++++. ...+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++
T Consensus 275 L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 275 LGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp EEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecC
Confidence 8777643 33456666777788888888777654433 335677778887777 4343333333334467777777773
Q ss_pred ----------CcCCCCC-ccccccCCCCCEEeCCCCcCCCCCCccccc-ccccccccCC----cccccCC-----CCcCC
Q 036729 341 ----------NKLSGEF-PLELLRCSSLQQLDLSDNSFKGELPRSLDK-LEELTDLLLN----NNSFTGS-----FPPEI 399 (970)
Q Consensus 341 ----------n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~~l 399 (970)
+.+++.. ......|++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. ++..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 3443321 222345677777777666666544444443 5666666664 3344432 11123
Q ss_pred CCcCCCCeeeccccc--ccccCCcccc-CCCCCCEEEcccccCCC-cCCcccccCCCCCEEeccccccCCc-ccccccCC
Q 036729 400 GNLSKLENLFLFDNM--ITGKIPVEIG-KLQTLSAIYLYDNQMSG-SIPRELTNCSGLTEIDFFGNHFSGS-IPETMGKL 474 (970)
Q Consensus 400 ~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l 474 (970)
.++++|++|++++|. +++..+..+. .+++|++|++++|++++ .++..+.++++|++|++++|.+++. ++..+..+
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 512 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence 445566666665332 3333332222 24555555555555544 2223334555555555555554432 22223345
Q ss_pred CCccEEeeccccCCC
Q 036729 475 KNLVILQLRQNDLSG 489 (970)
Q Consensus 475 ~~L~~L~L~~n~l~~ 489 (970)
++|+.|++++|+++.
T Consensus 513 ~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 513 PSLRYLWVQGYRASM 527 (592)
T ss_dssp SSCCEEEEESCBCCT
T ss_pred CccCeeECcCCcCCH
Confidence 555555555555443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.9e-29 Score=273.94 Aligned_cols=278 Identities=20% Similarity=0.222 Sum_probs=206.7
Q ss_pred CCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEcc
Q 036729 547 KKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLS 626 (970)
Q Consensus 547 ~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 626 (970)
+.....+++++.++.....+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCeEeeCCCCCcccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 33344555555555332222 2467777777777776666677777888888888888777777778888888888888
Q ss_pred CCcCccCCcccCcCcCcccEEEccCCcccCCcc-ccccccCccceEEcccC-cCcCCCCCCCCCCCcceEEEccCCcCcc
Q 036729 627 FNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIP-FWLGSLQEIGELDLSSN-NFNGTVPAEIGNCSKLLKLSLRGNNLSG 704 (970)
Q Consensus 627 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 704 (970)
+|.+++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..|.++++|++|++++|.+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 888876655557778888888888888875444 46777888888888888 4666666778888888888888888888
Q ss_pred cCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhh---hhhhHhhhhCCCCcccc----
Q 036729 705 KIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGR---LTELQVILDLSKNNFSG---- 777 (970)
Q Consensus 705 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~---l~~L~~~L~ls~N~l~g---- 777 (970)
..|..+..+++|++|++++|++....+..+..+++|+.|++++|.+++..+..+.. ...++. ++++++.+++
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~-l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK-FTFRNVKITDESLF 267 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCE-EEEESCBCCHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhc-cccccccccCcchh
Confidence 77888888888888888888886555445566788888888888888765554432 334444 6677777665
Q ss_pred cCCccccCCCCCCEEeCCCCcCccccCcc-cCCCCcCcEEecCCCcccccCC
Q 036729 778 EIPPSLGSLLKLERLNISYNQLQGQVPAS-LGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 778 ~ip~~~~~l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~g~~p 828 (970)
.+|..++++++|++||+++|+++ .+|.. +..+++|++|++++|++.|.+|
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 47888999999999999999999 56655 5899999999999999999998
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.2e-28 Score=265.14 Aligned_cols=250 Identities=24% Similarity=0.286 Sum_probs=195.3
Q ss_pred EEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccC--CcccCcCcCcccEEEccC
Q 036729 574 ALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ--IAPQLSKCAKLAHLLLSN 651 (970)
Q Consensus 574 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~L~~ 651 (970)
.++++++.++. +|..+ .++|++|++++|+++...+..|..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 44455544442 33322 24677777777777754444567777788888887777632 245566677888888888
Q ss_pred CcccCCccccccccCccceEEcccCcCcCCCC-CCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCcccc-c
Q 036729 652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVP-AEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG-N 729 (970)
Q Consensus 652 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~ 729 (970)
|.++. +|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus 88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Ccccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 87773 56667778888888888888876655 567788888888888888888777788888888888888888876 5
Q ss_pred cchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCC
Q 036729 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGK 809 (970)
Q Consensus 730 ~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 809 (970)
.|..+..+++|+.|++++|++++..|..+..++.|+. |++++|.+++..+..+..+++|++||+++|++++..|..+..
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV-LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE-EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE-EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 7778888888888888888888887888888888888 899999998877778899999999999999999999999998
Q ss_pred CC-cCcEEecCCCcccccCC
Q 036729 810 LT-SLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 810 l~-~L~~l~ls~N~l~g~~p 828 (970)
++ +|++|++++|+++|.++
T Consensus 246 ~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCTTCCEEECTTCCEECSGG
T ss_pred hhccCCEEEccCCCeecccC
Confidence 84 89999999999999876
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.6e-28 Score=263.40 Aligned_cols=284 Identities=23% Similarity=0.240 Sum_probs=222.7
Q ss_pred EEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCC--CCcccccCCCCcEEEccCC
Q 036729 551 IINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN--IPSEFGKLTELNFLDLSFN 628 (970)
Q Consensus 551 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n 628 (970)
.++++++.++.....+ .++++.|++++|.++...+..+..+++|++|++++|.++.. .|..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 4455555444322222 24677777777777755555577788888888888877632 3566677888899999988
Q ss_pred cCccCCcccCcCcCcccEEEccCCcccCCcc-ccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcc-cC
Q 036729 629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIP-FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG-KI 706 (970)
Q Consensus 629 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~ 706 (970)
.+++ +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..
T Consensus 89 ~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp SEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 8874 56668888899999999998887655 578888999999999999988888888899999999999999887 57
Q ss_pred CcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCC
Q 036729 707 PPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSL 786 (970)
Q Consensus 707 ~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l 786 (970)
|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..++.|+. ||+++|.+++..|..+..+
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV-LDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE-EECTTSCCCBCSSSSCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE-eECCCCCCcccCHHHHHhh
Confidence 888889999999999999999888888999999999999999999877778888999998 9999999999999999998
Q ss_pred C-CCCEEeCCCCcCccccC--cccCCCCcCcEEecCCCcccccCCccccCCCCcc
Q 036729 787 L-KLERLNISYNQLQGQVP--ASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSS 838 (970)
Q Consensus 787 ~-~L~~L~ls~N~l~~~~p--~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~ 838 (970)
+ +|++|++++|.+++..+ ....-+...+.+.+..+.+.|..|..+.+.+...
T Consensus 247 ~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~ 301 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS 301 (306)
T ss_dssp CTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGG
T ss_pred hccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeee
Confidence 4 99999999999987532 1112233455567778889999887776655443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.6e-28 Score=268.21 Aligned_cols=286 Identities=21% Similarity=0.218 Sum_probs=174.4
Q ss_pred CCCCCCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcC
Q 036729 47 WSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSF 126 (970)
Q Consensus 47 w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~ 126 (970)
|.....+|.|.|+ |+. +++.++ .+|..+. ++|++|+|++|.+++..+..+.++++|++|++++|.+
T Consensus 23 ~~~~~~~C~~~~~-c~~----------~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKG----------SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-EEC----------CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-eeC----------CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 4444567999987 753 333333 2333332 3666677776666654444666666777777776666
Q ss_pred cCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCC-ccccCCceeeEEEcCCC-cCCCCCcc
Q 036729 127 SGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIP-VEIGNLKHLTSLDLQMN-KLSGLIPE 204 (970)
Q Consensus 127 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~Ls~n-~i~~~~~~ 204 (970)
++..|..++.+++|++|++++|.+.+..+..++++++|++|++++|++++..+ ..++++++|++|++++| .+++..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 65555666666677777776666654433446666667777777666663322 35666667777777666 35555556
Q ss_pred cccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCcccc---CC
Q 036729 205 AIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELN---KL 281 (970)
Q Consensus 205 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~---~l 281 (970)
.|.++++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+. ..
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CC
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccccc
Confidence 666667777777777766666666666667777777777666533333334566677777777766655443332 34
Q ss_pred CCccEEECcCCcCcc----ccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCC
Q 036729 282 AQLEELDLSKNNLSG----SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEF 347 (970)
Q Consensus 282 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 347 (970)
..++.++++++.+++ .+|..+..+++|++|++++|.++ .+|..++..+++|++|++++|.+.+..
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 556666666666654 24455666677777777777776 566665555677777777777766543
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1e-27 Score=261.29 Aligned_cols=225 Identities=21% Similarity=0.295 Sum_probs=160.4
Q ss_pred cCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEc
Q 036729 594 RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDL 673 (970)
Q Consensus 594 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 673 (970)
..++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34555555555555 44555555666666666666665 55555666666666666666665 44555666666666666
Q ss_pred ccCcCcCCCCCCCC---------CCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEE
Q 036729 674 SSNNFNGTVPAEIG---------NCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELR 744 (970)
Q Consensus 674 s~N~l~~~~p~~l~---------~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 744 (970)
++|++.+.+|..+. ++++|++|++++|.++ .+|..+..+++|++|++++|++++ +|..+..+++|+.|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 66666666655544 3777888888888777 667777778888888888888775 444677788888888
Q ss_pred CccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccc
Q 036729 745 LSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824 (970)
Q Consensus 745 Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 824 (970)
+++|++.+.+|..++.++.|+. |++++|.+.+.+|..++++++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~-L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKR-LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCE-EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCE-EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888888888888888887 888888888888888888888888888888888888888888888888888766543
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.8e-27 Score=269.15 Aligned_cols=250 Identities=23% Similarity=0.213 Sum_probs=207.6
Q ss_pred cEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCC
Q 036729 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652 (970)
Q Consensus 573 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 652 (970)
..++.++..++. +|..+. ++++.|++++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 345555555543 344332 56788888888888777888888888888888888888887788888888888888888
Q ss_pred cccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCc-CcccCCcccccccccceeccCCCccccccc
Q 036729 653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN-LSGKIPPEIGNLTALNVLNLQRNSLSGNIP 731 (970)
Q Consensus 653 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p 731 (970)
++++..+..|..+++|++|+|++|++.+..+..|..+++|++|++++|+ +....+..+..+++|++|++++|++++. |
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 8887777778888888888888888887777788888888888888854 4433344688888899999999988765 3
Q ss_pred hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC
Q 036729 732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT 811 (970)
Q Consensus 732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~ 811 (970)
.+..+++|+.|+|++|++++..|..+..++.|+. |++++|.+++..|..|.++++|+.|+|++|++++..+..+..++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK-LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE-EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCE-EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 4778889999999999999888999999999998 99999999999999999999999999999999988888899999
Q ss_pred cCcEEecCCCcccccCC
Q 036729 812 SLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 812 ~L~~l~ls~N~l~g~~p 828 (970)
+|+.|++++|++.|.+.
T Consensus 291 ~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 291 YLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TCCEEECCSSCEECSTT
T ss_pred CCCEEEccCCCcCCCCC
Confidence 99999999999999987
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=9.1e-27 Score=265.86 Aligned_cols=250 Identities=23% Similarity=0.206 Sum_probs=206.0
Q ss_pred cEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCC
Q 036729 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652 (970)
Q Consensus 573 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 652 (970)
..++.++..++. +|..+. ++++.|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 345555555542 444333 56778888888887777778888888888888888888777778888888888888888
Q ss_pred cccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCc-CcccCCcccccccccceeccCCCccccccc
Q 036729 653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN-LSGKIPPEIGNLTALNVLNLQRNSLSGNIP 731 (970)
Q Consensus 653 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p 731 (970)
++++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|+ +....+..|.++++|++|++++|+++.. |
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c
Confidence 8887777778888888888888888887777778888888888888854 4434444688888888999998888744 3
Q ss_pred hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC
Q 036729 732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT 811 (970)
Q Consensus 732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~ 811 (970)
.+..+++|+.|+|++|++++..|..+..++.|+. |++++|.+++..|..|.++++|+.|||++|++++..+..+..++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK-LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE-EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCE-EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 4778889999999999999888899999999998 99999999999999999999999999999999998888999999
Q ss_pred cCcEEecCCCcccccCC
Q 036729 812 SLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 812 ~L~~l~ls~N~l~g~~p 828 (970)
+|+.|++++|++.|.+.
T Consensus 280 ~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 280 HLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TCCEEECCSSCEECSST
T ss_pred CCCEEEcCCCCccCCCC
Confidence 99999999999999987
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.6e-30 Score=307.12 Aligned_cols=428 Identities=14% Similarity=0.081 Sum_probs=276.8
Q ss_pred CCCccccCCCCCcEeecCCCcC---cCCCCcCCC------------CCCCCcEEEccCccCCccCCccccCC--cccchh
Q 036729 105 LIPSELGQLQNLRILLLYSNSF---SGKIPPEIG------------FLNKLQVLRIGDNLLWGEIPPHIGNL--TELREL 167 (970)
Q Consensus 105 ~~p~~l~~l~~L~~L~Ls~n~~---~~~~p~~l~------------~l~~L~~L~L~~n~~~~~~p~~l~~l--~~L~~L 167 (970)
..+..+..+++|++|+++++.. .+.+|..++ .+++|++|+|++|.+.+..+..+++. .+|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3445667899999999988643 245555554 68899999999998887777777664 449999
Q ss_pred hcccccc-cc-CCCccccCCceeeEEEcCCCcCCCCC----cccccCCcccccccccccccCC----CCcccccCCCCCc
Q 036729 168 AIAYCQL-NG-SIPVEIGNLKHLTSLDLQMNKLSGLI----PEAIHGCEELQKFAASNNMLEG----TIPSSIVLLKSLQ 237 (970)
Q Consensus 168 ~L~~~~~-~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~----~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~ 237 (970)
++++|.. +. .++....++++|++|+|++|.+++.. +..+.++++|++|++++|.+++ .++..+..+++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 9998862 11 12233457889999999999887663 3345678889999999888873 3444556788899
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEccCcccc---ccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEcc
Q 036729 238 ILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFD---GEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLS 314 (970)
Q Consensus 238 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 314 (970)
+|++++|.+.+ ++..+..+++|++|+++..... +..+..+..+++|+.|+++++ ..+.++..+..+++|++|+++
T Consensus 224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEET
T ss_pred EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecC
Confidence 99999888875 5677888889999988764332 233456677888888888775 334556667778888888888
Q ss_pred CCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCC-----------CcCCCCCCccccccccccc
Q 036729 315 DNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSD-----------NSFKGELPRSLDKLEELTD 383 (970)
Q Consensus 315 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~-----------n~l~~~~~~~l~~l~~L~~ 383 (970)
+|.+++.....+...+++|++|++..+-..+.++.....|++|++|++++ +.+++..
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~------------ 369 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG------------ 369 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH------------
T ss_pred CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH------------
Confidence 88866544444455677888888873322223333345677777777773 2222110
Q ss_pred ccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccC-CCCCCEEEcc----cccCCCc-----CCcccccCCCC
Q 036729 384 LLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGK-LQTLSAIYLY----DNQMSGS-----IPRELTNCSGL 453 (970)
Q Consensus 384 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L 453 (970)
++.....+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|
T Consensus 370 -----------~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 370 -----------LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp -----------HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred -----------HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 0111223556666666666666554444444 6666776664 4445442 22335567777
Q ss_pred CEEeccccc--cCCccccccc-CCCCccEEeeccccCCC-CCCCcccccccccEEeccCCcccCc-cCcchhcCCCCceE
Q 036729 454 TEIDFFGNH--FSGSIPETMG-KLKNLVILQLRQNDLSG-PIPASLGYCKRLQQIALADNKLSGS-VPLTFRFLSELYLI 528 (970)
Q Consensus 454 ~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 528 (970)
++|+++.|. +++.....+. .+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. .+.....+++|+.|
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence 777776433 4544444433 36777777777777765 2333445677777777777776544 23334567778888
Q ss_pred EccccccccCCCccc-cCCCCCcEEEcccc
Q 036729 529 TLYNNSFKGPLPPSL-FQLKKLRIINFSHN 557 (970)
Q Consensus 529 ~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n 557 (970)
++++|+++......+ ..++.+....+..+
T Consensus 519 ~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 519 WVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred ECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 888887765533333 34566666555544
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.1e-28 Score=265.46 Aligned_cols=246 Identities=22% Similarity=0.260 Sum_probs=210.1
Q ss_pred CcccEEECCCCCCCCCCCcccccCcCCCceeccCccc-cCCCCcccc-------cCCCCcEEEccCCcCccCCcccC--c
Q 036729 570 NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHL-TGNIPSEFG-------KLTELNFLDLSFNSFTGQIAPQL--S 639 (970)
Q Consensus 570 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~~~~l--~ 639 (970)
++|+.+++++|.+ .+|..+... |+.|++++|.+ .+.+|..+. ++++|++|++++|.+++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4566677777777 567666544 89999999988 455666665 78999999999999999888876 8
Q ss_pred CcCcccEEEccCCcccCCcccccccc-----CccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccC--Cccc--
Q 036729 640 KCAKLAHLLLSNNELTGTIPFWLGSL-----QEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI--PPEI-- 710 (970)
Q Consensus 640 ~~~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~--~~~l-- 710 (970)
.+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..|+.+++|++|++++|++.+.+ |..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 999999999999999988 8888877 99999999999999988899999999999999999987652 3334
Q ss_pred ccccccceeccCCCccccc---cchhhhcccCCcEEECccccccccCc-hhhhhhhhhHhhhhCCCCcccccCCccccCC
Q 036729 711 GNLTALNVLNLQRNSLSGN---IPSTIQQCKKLYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSL 786 (970)
Q Consensus 711 ~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l 786 (970)
..+++|++|++++|++++. ....+..+++|+.|++++|++++.+| ..+..++.|+. |++++|.++ .+|..+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~-L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS-LNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE-EECTTSCCS-SCCSSCC--
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE-EECCCCccC-hhhhhcc--
Confidence 7899999999999999842 23445678999999999999999886 45667889998 999999999 8888877
Q ss_pred CCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccccc
Q 036729 787 LKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQ 826 (970)
Q Consensus 787 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 826 (970)
++|++||+++|++++. |. +..+++|++|++++|++++.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8999999999999987 66 99999999999999999864
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.7e-27 Score=251.05 Aligned_cols=209 Identities=25% Similarity=0.233 Sum_probs=112.0
Q ss_pred CCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCc-CcCCCCCCCCCCCcceEEEc
Q 036729 619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN-FNGTVPAEIGNCSKLLKLSL 697 (970)
Q Consensus 619 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L 697 (970)
+|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|+ +....|..|..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444444444444444444444444444444444444444444444444444 44333444444555555555
Q ss_pred cCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccc
Q 036729 698 RGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG 777 (970)
Q Consensus 698 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g 777 (970)
++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..++.|+. |++++|.+++
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~ 191 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR-LLLHQNRVAH 191 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSSCCCE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE-EECCCCcccc
Confidence 555555444444555555555555555555444444555555555555555555444444555555555 5666666665
Q ss_pred cCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 778 EIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 778 ~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
..|..++++++|+.|++++|++++..|..+..+++|++|++++|++.|.++
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 556666666666666666666666555556666666666666666666665
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.7e-26 Score=247.41 Aligned_cols=258 Identities=22% Similarity=0.204 Sum_probs=230.1
Q ss_pred cEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCC
Q 036729 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652 (970)
Q Consensus 573 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n 652 (970)
+.++.+++.++. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678899888875 34433 468999999999999888888999999999999999999988999999999999999999
Q ss_pred c-ccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccc
Q 036729 653 E-LTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP 731 (970)
Q Consensus 653 ~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p 731 (970)
. +....|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 8 887778899999999999999999999889999999999999999999998888889999999999999999998888
Q ss_pred hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC
Q 036729 732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT 811 (970)
Q Consensus 732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~ 811 (970)
..+..+++|+.|++++|.+++..|..+..++.|+. |++++|.+++..+..+..+++|+.|++++|.+....+.. .-..
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT-LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccE-eeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 88999999999999999999999999999999998 999999999887788999999999999999998754432 1124
Q ss_pred cCcEEecCCCcccccCCccccCCC
Q 036729 812 SLHVLNLSNNHLQGQLPLTFSGFP 835 (970)
Q Consensus 812 ~L~~l~ls~N~l~g~~p~~~~~~~ 835 (970)
.++.++.+.+.+.|..|..+.+..
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l~g~~ 272 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRLAGRD 272 (285)
T ss_dssp HHHHCCSEECCCBEEESGGGTTCB
T ss_pred HHHhcccccCccccCCchHhCCcC
Confidence 566677889999999997766543
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.5e-26 Score=261.13 Aligned_cols=228 Identities=24% Similarity=0.240 Sum_probs=179.1
Q ss_pred CCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhc
Q 036729 90 TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAI 169 (970)
Q Consensus 90 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 169 (970)
+++++|+|++|.+++..|..|+++++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..+.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57888888888888777888888888888888888888777778888888888888888887666666788888888888
Q ss_pred cccccccCCCccccCCceeeEEEcCCC-cCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCcc
Q 036729 170 AYCQLNGSIPVEIGNLKHLTSLDLQMN-KLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG 248 (970)
Q Consensus 170 ~~~~~~~~~p~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 248 (970)
++|++.+..+..+.++++|++|++++| .+....+..|.++++|++|++++|.+++. | .+..+++|++|+|++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 888887666667888888888888874 45544555677788888888888877743 3 46777788888888888887
Q ss_pred ccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCccc
Q 036729 249 SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFT 319 (970)
Q Consensus 249 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 319 (970)
..|..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.+++..+..+..+++|+.|++++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77777888888888888888888777777778888888888888887777777777777888887777765
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.2e-28 Score=265.31 Aligned_cols=265 Identities=23% Similarity=0.239 Sum_probs=128.1
Q ss_pred CCCCCCCCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCC-CCCCCcccc-------CCCCC
Q 036729 45 ENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSL-TGLIPSELG-------QLQNL 116 (970)
Q Consensus 45 ~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~-~~~~p~~l~-------~l~~L 116 (970)
.+|.....|+.|..+.......+++.++++++.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|
T Consensus 22 ~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L 97 (312)
T 1wwl_A 22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97 (312)
T ss_dssp CCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCC
T ss_pred cchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCc
Confidence 3454444455554433221223445555555555 444433333 55556666555 234454444 55666
Q ss_pred cEeecCCCcCcCCCCcCC--CCCCCCcEEEccCccCCccCCccccCC-----cccchhhccccccccCCCccccCCceee
Q 036729 117 RILLLYSNSFSGKIPPEI--GFLNKLQVLRIGDNLLWGEIPPHIGNL-----TELRELAIAYCQLNGSIPVEIGNLKHLT 189 (970)
Q Consensus 117 ~~L~Ls~n~~~~~~p~~l--~~l~~L~~L~L~~n~~~~~~p~~l~~l-----~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 189 (970)
++|+|++|.+++.+|..+ +.+++|++|++++|.+.+. |..++.+ ++|++|++++|++.+..|..++++++|+
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 666666666665555554 5566666666666665544 5444444 5555555555555554445555555555
Q ss_pred EEEcCCCcCCCC--Ccccc--cCCcccccccccccccCC--CCc-ccccCCCCCcEEEccCCcCccccC-ccccCCCCCC
Q 036729 190 SLDLQMNKLSGL--IPEAI--HGCEELQKFAASNNMLEG--TIP-SSIVLLKSLQILNLANNSLSGSIP-VELSHLFNLR 261 (970)
Q Consensus 190 ~L~Ls~n~i~~~--~~~~l--~~l~~L~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~ 261 (970)
+|++++|++.+. .+..+ .++++|++|++++|.+++ .++ ..+..+++|++|++++|.+++..| ..+..+++|+
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 555555554433 12222 445555555555555442 111 122344455555555555544432 2233344455
Q ss_pred EEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCccc
Q 036729 262 YLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFT 319 (970)
Q Consensus 262 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 319 (970)
+|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|.++
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 5555555444 3333333 4444444444444443 22 444444444444444443
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.9e-25 Score=253.43 Aligned_cols=248 Identities=22% Similarity=0.229 Sum_probs=205.2
Q ss_pred CcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCC
Q 036729 549 LRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628 (970)
Q Consensus 549 L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 628 (970)
.+.++.++..++.....+ .++++.|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 345555555554332222 256778888888888777788888888888888888888777788888999999999999
Q ss_pred cCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCc-CcCCCCCCCCCCCcceEEEccCCcCcccCC
Q 036729 629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN-FNGTVPAEIGNCSKLLKLSLRGNNLSGKIP 707 (970)
Q Consensus 629 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 707 (970)
++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|+ +....+..|.++++|++|++++|+++.. |
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c
Confidence 9887777788888999999999999887777788889999999999854 4444445788899999999999998843 4
Q ss_pred cccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCC
Q 036729 708 PEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL 787 (970)
Q Consensus 708 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~ 787 (970)
.+..+++|++|++++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+. |+|++|.+++..+..|..++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE-INLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE-EECTTSCCCCCCTTTTSSCT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE-EECCCCCCCccChhHhcccc
Confidence 4788889999999999999888899999999999999999999888888999999998 99999999988888889999
Q ss_pred CCCEEeCCCCcCcc
Q 036729 788 KLERLNISYNQLQG 801 (970)
Q Consensus 788 ~L~~L~ls~N~l~~ 801 (970)
+|+.|+|++|.+..
T Consensus 280 ~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 280 HLERIHLHHNPWNC 293 (440)
T ss_dssp TCCEEECCSSCEEC
T ss_pred CCCEEEcCCCCccC
Confidence 99999999998753
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-27 Score=257.98 Aligned_cols=246 Identities=22% Similarity=0.207 Sum_probs=164.2
Q ss_pred CCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEE
Q 036729 568 GSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHL 647 (970)
Q Consensus 568 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L 647 (970)
.+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 34566677777777666666667777777777777777765443 667777777777777776432 23667777
Q ss_pred EccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccc-ccccccceeccCCCcc
Q 036729 648 LLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSL 726 (970)
Q Consensus 648 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l-~~l~~L~~L~L~~N~l 726 (970)
++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|++
T Consensus 105 ~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 77777776554433 4567777777777776666667777777777777777776655555 3567777777777777
Q ss_pred ccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCc-cccCc
Q 036729 727 SGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ-GQVPA 805 (970)
Q Consensus 727 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~-~~~p~ 805 (970)
++..+ ...+++|+.|++++|++++ +|..+..++.|+. |++++|.++ .+|..+..+++|+.|++++|.++ +.+|.
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~-L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW-ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSE-EECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred ccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccE-EECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 65522 2236677777777777774 3444667777776 777777777 35666777777777777777776 66666
Q ss_pred ccCCCCcCcEEecC-CCcccccCC
Q 036729 806 SLGKLTSLHVLNLS-NNHLQGQLP 828 (970)
Q Consensus 806 ~l~~l~~L~~l~ls-~N~l~g~~p 828 (970)
.+..++.|+.++++ .+.++|..|
T Consensus 257 ~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred HHhccccceEEECCCchhccCCch
Confidence 77777777777776 344555444
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.2e-25 Score=263.25 Aligned_cols=287 Identities=28% Similarity=0.323 Sum_probs=176.5
Q ss_pred CCCCCCCCCCCCCccceEec------CCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCC
Q 036729 43 ILENWSARAHMCSWHGVTCS------DDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNL 116 (970)
Q Consensus 43 ~~~~w~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L 116 (970)
.++.|....+||.|+|..|. .....++.|++++++++ .+|..+. ++|++|+|++|.++ .+|. .+++|
T Consensus 11 ~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L 83 (622)
T 3g06_A 11 VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPEL 83 (622)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTC
T ss_pred HHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCC
Confidence 34567667789999774321 11235889999999988 6676665 78999999999888 4565 57889
Q ss_pred cEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCC
Q 036729 117 RILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMN 196 (970)
Q Consensus 117 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n 196 (970)
++|+|++|.++ .+|. .+++|++|++++|.+.+ +|. .+++|++|++++|++++ +|.. +++|++|++++|
T Consensus 84 ~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N 151 (622)
T 3g06_A 84 RTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDN 151 (622)
T ss_dssp CEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred CEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCC
Confidence 99999999887 5665 67889999999888764 343 45677788888887764 4443 367777777777
Q ss_pred cCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCc
Q 036729 197 KLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPS 276 (970)
Q Consensus 197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 276 (970)
++++.. . ..++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++. +|.
T Consensus 152 ~l~~l~-~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~ 218 (622)
T 3g06_A 152 QLASLP-A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA 218 (622)
T ss_dssp CCSCCC-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC
T ss_pred cCCCcC-C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC
Confidence 777542 1 23556666666666663 33 334566666666666653 332 13556666666665553 222
Q ss_pred cccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCC
Q 036729 277 ELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSS 356 (970)
Q Consensus 277 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 356 (970)
.+++|++|++++|.+++. | ..+++|+.|++++|.++ .+|. .+++
T Consensus 219 ---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~----------------------------~~~~ 262 (622)
T 3g06_A 219 ---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM----------------------------LPSG 262 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC----------------------------CCTT
T ss_pred ---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc----------------------------cccc
Confidence 134555555555555542 2 23345555555555554 2332 3344
Q ss_pred CCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcC
Q 036729 357 LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPE 398 (970)
Q Consensus 357 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 398 (970)
|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 555555555555 34445555555555555555555444433
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.6e-26 Score=265.88 Aligned_cols=234 Identities=22% Similarity=0.204 Sum_probs=113.0
Q ss_pred cccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEcc
Q 036729 571 SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLS 650 (970)
Q Consensus 571 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~ 650 (970)
+|+.|++++|.+++..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 45555555555555445555555555555555555554333 5555555555555555553221 2445555555
Q ss_pred CCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccc-cccccceeccCCCccccc
Q 036729 651 NNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIG-NLTALNVLNLQRNSLSGN 729 (970)
Q Consensus 651 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~ 729 (970)
+|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++.+|..+. .+++|++|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 5555544332 234455555555555554444455555555555555555554444443 445555555555555443
Q ss_pred cchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCc-cccCcccC
Q 036729 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ-GQVPASLG 808 (970)
Q Consensus 730 ~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~-~~~p~~l~ 808 (970)
.+ ...+++|+.|+|++|.+++. |..+..++.|+. |++++|.+++ +|..++.+++|+.|++++|.+. +.+|..+.
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~-L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTW-ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSE-EECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccE-EEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 22 12344555555555555432 222444444444 4455544443 3444444444455555544444 34444444
Q ss_pred CCCcCcEEecC
Q 036729 809 KLTSLHVLNLS 819 (970)
Q Consensus 809 ~l~~L~~l~ls 819 (970)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 44444444443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-26 Score=250.66 Aligned_cols=266 Identities=19% Similarity=0.184 Sum_probs=180.8
Q ss_pred cEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcccc
Q 036729 478 VILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHN 557 (970)
Q Consensus 478 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 557 (970)
+..+++.+.+.......+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 344444444433333334445556666666666655555555555555555555555544332 444455555555554
Q ss_pred ccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCccc
Q 036729 558 KFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ 637 (970)
Q Consensus 558 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 637 (970)
.+++. ...++|+.|++++|++++..+. .+++|++|++++|++++..+..
T Consensus 91 ~l~~l----------------------------~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 91 YVQEL----------------------------LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp EEEEE----------------------------EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBC
T ss_pred ccccc----------------------------cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchh
Confidence 44321 1225666777777766654332 3567888888888888777777
Q ss_pred CcCcCcccEEEccCCcccCCccccc-cccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccccccccc
Q 036729 638 LSKCAKLAHLLLSNNELTGTIPFWL-GSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL 716 (970)
Q Consensus 638 l~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 716 (970)
+..+++|++|++++|.+++..+..+ ..+++|++|++++|++++..+ ...+++|++|++++|++++. |..+..+++|
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L 216 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGV 216 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcc
Confidence 8888888888888888887766666 467888888888888886532 33488899999999988864 4458888899
Q ss_pred ceeccCCCccccccchhhhcccCCcEEECcccccc-ccCchhhhhhhhhHhhhhCC-CCcccccCCc
Q 036729 717 NVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT-GSIPADLGRLTELQVILDLS-KNNFSGEIPP 781 (970)
Q Consensus 717 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~~L~ls-~N~l~g~ip~ 781 (970)
++|++++|++++ +|..+..+++|+.|++++|+++ +.+|..+..++.|+. ++++ .+.++|..|.
T Consensus 217 ~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~-l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT-VAKQTVKKLTGQNEE 281 (317)
T ss_dssp SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH-HHHHHHHHHHSSSSC
T ss_pred cEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE-EECCCchhccCCchh
Confidence 999999998884 5777888889999999999998 777888888888887 8887 4456665554
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6.7e-25 Score=233.68 Aligned_cols=209 Identities=27% Similarity=0.267 Sum_probs=171.6
Q ss_pred CCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEc
Q 036729 618 TELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSL 697 (970)
Q Consensus 618 ~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 697 (970)
++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777777777777766667777777888888888777666667777888888888888888777777888888888888
Q ss_pred cCCcCcccCCcccccccccceeccCCCccccc-cchhhhcccCCcEEECccccccccCchhhhhhhhhH----hhhhCCC
Q 036729 698 RGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN-IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQ----VILDLSK 772 (970)
Q Consensus 698 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~----~~L~ls~ 772 (970)
++|.+.+..+..+..+++|++|++++|++++. +|..+..+++|+.|++++|++++..+..+..+..++ . +++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~-L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS-LDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE-EECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee-eecCC
Confidence 88888877666788888888888888888764 578888888899999999988887777888777776 5 89999
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 773 NNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 773 N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
|.+++..+..+.. .+|+.|++++|++++..+..+..+++|+.|++++|+++|.+|
T Consensus 187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9999776666554 489999999999998877888999999999999999999998
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=8.4e-25 Score=231.80 Aligned_cols=217 Identities=28% Similarity=0.316 Sum_probs=144.2
Q ss_pred CCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCC
Q 036729 51 AHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130 (970)
Q Consensus 51 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 130 (970)
.++|.|.|+.|.. .+.++.++++++.++. +|..+. +++++|+|++|.+++..+..++++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4789999999973 3466789999998884 555443 67899999999988766678888999999999988888544
Q ss_pred CcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCc
Q 036729 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCE 210 (970)
Q Consensus 131 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 210 (970)
+..+..+++|++|++++|.+.+..+..+.++++|++|++++|++++..+..++.+++|++|++++|++++..+..
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----- 152 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV----- 152 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH-----
Confidence 445677888888888888776555555556666666666666655554445555555555555555555444433
Q ss_pred ccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECc
Q 036729 211 ELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLS 290 (970)
Q Consensus 211 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~ 290 (970)
+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 153 -------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 153 -------------------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp -------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred -------------------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 4455555555555555554444445555666666666666655544556666666666666
Q ss_pred CCcCc
Q 036729 291 KNNLS 295 (970)
Q Consensus 291 ~n~l~ 295 (970)
+|.+.
T Consensus 214 ~N~~~ 218 (270)
T 2o6q_A 214 ENPWD 218 (270)
T ss_dssp SSCBC
T ss_pred CCCee
Confidence 66554
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.1e-29 Score=300.76 Aligned_cols=449 Identities=12% Similarity=0.110 Sum_probs=234.4
Q ss_pred CCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCC---CC------------ccccCCCCCc
Q 036729 53 MCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGL---IP------------SELGQLQNLR 117 (970)
Q Consensus 53 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~---~p------------~~l~~l~~L~ 117 (970)
|++|.++... ..+.+++.+.... .....+..+++|++|+|+++..... .| .....+++|+
T Consensus 34 ck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~ 108 (594)
T 2p1m_B 34 CKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108 (594)
T ss_dssp CHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred HHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC
Confidence 4578887221 2334555443211 1123456788999999998753211 11 1234677888
Q ss_pred EeecCCCcCcCCCCcCCC-CCCCCcEEEccCcc-CCcc-CCccccCCcccchhhccccccccCCCcccc----CCceeeE
Q 036729 118 ILLLYSNSFSGKIPPEIG-FLNKLQVLRIGDNL-LWGE-IPPHIGNLTELRELAIAYCQLNGSIPVEIG----NLKHLTS 190 (970)
Q Consensus 118 ~L~Ls~n~~~~~~p~~l~-~l~~L~~L~L~~n~-~~~~-~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~----~l~~L~~ 190 (970)
+|+|++|.+++..+..+. .+++|++|++++|. +... ++..+.++++|++|++++|.+++..+..+. .+++|++
T Consensus 109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~ 188 (594)
T 2p1m_B 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188 (594)
T ss_dssp EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCE
T ss_pred eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcE
Confidence 888888887766555554 57788888888873 3322 344445677888888888776654443333 5567777
Q ss_pred EEcCCCcCCCCCccc----ccCCcccccccccccccCCCCcccccCCCCCcEEEccCCc-------CccccCccccCCCC
Q 036729 191 LDLQMNKLSGLIPEA----IHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS-------LSGSIPVELSHLFN 259 (970)
Q Consensus 191 L~Ls~n~i~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~ 259 (970)
|++++|. ....... +.++++|++|++++|...+.++..+..+++|++|++..+. +.+ ++..+.++++
T Consensus 189 L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~ 266 (594)
T 2p1m_B 189 LNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKE 266 (594)
T ss_dssp EECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTT
T ss_pred EEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCC
Confidence 7777775 1111121 2345677777776663222255556666677777654432 222 2234556666
Q ss_pred CCEE-EccCccccccCCccccCCCCccEEECcCCcCccccc-cccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEE
Q 036729 260 LRYL-NLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSIS-LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLI 337 (970)
Q Consensus 260 L~~L-~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 337 (970)
|+.| .+.... .+.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+.....+...+++|++|+
T Consensus 267 L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 267 LRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp CCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence 6666 222221 12233333455666666666665443221 22345566666666655 22111122222345555555
Q ss_pred ccC---------CcCCCCCccccc-cCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCe
Q 036729 338 LAR---------NKLSGEFPLELL-RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLEN 407 (970)
Q Consensus 338 L~~---------n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 407 (970)
+.. +.+++.....+. .+++|++|.++.+.+++..+..+. ..+++|+.
T Consensus 345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~-----------------------~~~~~L~~ 401 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA-----------------------RNRPNMTR 401 (594)
T ss_dssp EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH-----------------------HHCTTCCE
T ss_pred EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH-----------------------hhCCCcce
Confidence 522 122211111111 244555554444444332222221 13455555
Q ss_pred eecc--c----ccccc-----cCCccccCCCCCCEEEcccccCCCcCCccccc-CCCCCEEeccccccCCcccccc-cCC
Q 036729 408 LFLF--D----NMITG-----KIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN-CSGLTEIDFFGNHFSGSIPETM-GKL 474 (970)
Q Consensus 408 L~L~--~----n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~-~~l 474 (970)
|+++ + +.+++ .++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++.....+ ..+
T Consensus 402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence 5555 2 22221 1111244556677777755 444433334433 6677777777777665444443 456
Q ss_pred CCccEEeeccccCCCCCCC-cccccccccEEeccCCcccCccCcch-hcCCCCceEEccccc
Q 036729 475 KNLVILQLRQNDLSGPIPA-SLGYCKRLQQIALADNKLSGSVPLTF-RFLSELYLITLYNNS 534 (970)
Q Consensus 475 ~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~ 534 (970)
++|+.|++++|.+++.... ....+++|+.|++++|+++......+ ..++.++...+..+.
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 7777777777776433222 33456777777777777643333333 455666665555443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1e-25 Score=259.22 Aligned_cols=227 Identities=22% Similarity=0.222 Sum_probs=200.8
Q ss_pred cCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceE
Q 036729 592 MSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGEL 671 (970)
Q Consensus 592 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 671 (970)
.+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 44589999999999999888999999999999999999998766 8999999999999999986433 3899999
Q ss_pred EcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhh-cccCCcEEECccccc
Q 036729 672 DLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQ-QCKKLYELRLSENFF 750 (970)
Q Consensus 672 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l 750 (970)
++++|.+++..+.. +++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|..+. .+++|+.|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 99999999876653 58899999999999999999999999999999999999999888886 799999999999999
Q ss_pred cccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccc-cCCc
Q 036729 751 TGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQG-QLPL 829 (970)
Q Consensus 751 ~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g-~~p~ 829 (970)
++..+ ...++.|+. |+|++|.+++..| .++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.| .+|.
T Consensus 182 ~~~~~--~~~l~~L~~-L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 182 YDVKG--QVVFAKLKT-LDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CEEEC--CCCCTTCCE-EECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--cccCCCCCE-EECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 97633 335889998 9999999997554 59999999999999999996 78889999999999999999994 4454
Q ss_pred cccC
Q 036729 830 TFSG 833 (970)
Q Consensus 830 ~~~~ 833 (970)
.+..
T Consensus 257 ~~~~ 260 (487)
T 3oja_A 257 FFSK 260 (487)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 4433
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3.7e-23 Score=242.17 Aligned_cols=269 Identities=22% Similarity=0.295 Sum_probs=170.8
Q ss_pred CCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEecc
Q 036729 428 TLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALA 507 (970)
Q Consensus 428 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 507 (970)
+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|++++ +|. .+++|+.|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4566666666665 4444433 566666666666653 332 34556666666665553 232 34555555555
Q ss_pred CCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCC
Q 036729 508 DNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIP 587 (970)
Q Consensus 508 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 587 (970)
+|.+++..+ .+++|+.|++++|.+++... .+++|+.|++++|.+++. |
T Consensus 110 ~N~l~~l~~----------------------------~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-~ 157 (622)
T 3g06_A 110 SNPLTHLPA----------------------------LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-P 157 (622)
T ss_dssp SCCCCCCCC----------------------------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-C
T ss_pred CCcCCCCCC----------------------------CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCc-C
Confidence 555543222 23445555555555543211 125566666666666542 2
Q ss_pred cccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCc
Q 036729 588 SELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQE 667 (970)
Q Consensus 588 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 667 (970)
. .+.+|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++. +|. .+++
T Consensus 158 ~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~ 222 (622)
T 3g06_A 158 A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSG 222 (622)
T ss_dssp C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTT
T ss_pred C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCC
Confidence 2 23567777777777764 44 445778888888888775 3332 3678888888888774 343 2477
Q ss_pred cceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECcc
Q 036729 668 IGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSE 747 (970)
Q Consensus 668 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 747 (970)
|+.|++++|++++ +| ..+++|++|++++|+++. +|. .+++|+.|++++|+++ .+|..+.++++|+.|+|++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 8888888888886 44 446788888888888884 444 5678888888888888 5677888888899999999
Q ss_pred ccccccCchhhhhhhh
Q 036729 748 NFFTGSIPADLGRLTE 763 (970)
Q Consensus 748 N~l~~~ip~~l~~l~~ 763 (970)
|++++.+|..+..++.
T Consensus 294 N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 294 NPLSERTLQALREITS 309 (622)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHhccc
Confidence 9888888877776653
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=9.4e-28 Score=286.42 Aligned_cols=447 Identities=14% Similarity=0.158 Sum_probs=292.9
Q ss_pred cEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcC---CCCcC------------CCCCCCCcEEEccCccCCccCCcc
Q 036729 93 ETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSG---KIPPE------------IGFLNKLQVLRIGDNLLWGEIPPH 157 (970)
Q Consensus 93 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~---~~p~~------------l~~l~~L~~L~L~~n~~~~~~p~~ 157 (970)
+.++++.+... .....+.++++|++|+++++.... ..|.. ...+++|++|++++|.+.+..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 45666554332 122356789999999999976321 22222 135789999999999888777776
Q ss_pred cc-CCcccchhhcccc-ccccC-CCccccCCceeeEEEcCCCcCCCCCccccc----CCcccccccccccc--cCCC-Cc
Q 036729 158 IG-NLTELRELAIAYC-QLNGS-IPVEIGNLKHLTSLDLQMNKLSGLIPEAIH----GCEELQKFAASNNM--LEGT-IP 227 (970)
Q Consensus 158 l~-~l~~L~~L~L~~~-~~~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~----~l~~L~~L~l~~n~--l~~~-~~ 227 (970)
+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. ++.. ++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 75 6889999999988 44432 344455789999999999988876655543 66788888888886 2211 11
Q ss_pred ccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCcc-------ccccCCccccCCCCccEE-ECcCCcCccccc
Q 036729 228 SSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNI-------FDGEIPSELNKLAQLEEL-DLSKNNLSGSIS 299 (970)
Q Consensus 228 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------~~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~ 299 (970)
..+..+++|++|++++|...+.++..+..+++|++|++..+. +.+ ++..+.++++|+.| .+.+.. .+.++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l~ 282 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYLP 282 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccc-hhhHH
Confidence 222456888888888884333466677788888888865543 232 33467778888888 343322 22344
Q ss_pred cccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCC-CCccccccCCCCCEEeCCCCcCCCCCCcccccc
Q 036729 300 LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSG-EFPLELLRCSSLQQLDLSDNSFKGELPRSLDKL 378 (970)
Q Consensus 300 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 378 (970)
..+..+++|++|++++|.+++.....+...+++|++|++.+| +.. .++.....+++|++|+++.+.-.|
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g--------- 352 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV--------- 352 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC---------
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc---------
Confidence 444467788888888887664444444556777777777776 322 122222346777777775442110
Q ss_pred cccccccCCcccccCCCCcCC-CCcCCCCeeecccccccccCCcccc-CCCCCCEEEcc--c----ccCCCc-----CCc
Q 036729 379 EELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEIG-KLQTLSAIYLY--D----NQMSGS-----IPR 445 (970)
Q Consensus 379 ~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~-----~~~ 445 (970)
....+.+++.....+ ..+++|++|.+..+.+++..+..+. .+++|+.|+++ + +.+++. ++.
T Consensus 353 ------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~ 426 (594)
T 2p1m_B 353 ------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426 (594)
T ss_dssp ------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred ------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence 001112221111112 2468899998888888776555554 58999999999 3 444421 222
Q ss_pred ccccCCCCCEEeccccccCCcccccccC-CCCccEEeeccccCCCCCCCcc-cccccccEEeccCCcccCccCc-chhcC
Q 036729 446 ELTNCSGLTEIDFFGNHFSGSIPETMGK-LKNLVILQLRQNDLSGPIPASL-GYCKRLQQIALADNKLSGSVPL-TFRFL 522 (970)
Q Consensus 446 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~~~-~~~~l 522 (970)
.+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+
T Consensus 427 l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 505 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505 (594)
T ss_dssp HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence 367889999999987 666655555655 8999999999999876544444 6789999999999999654443 34568
Q ss_pred CCCceEEccccccccCCCccc-cCCCCCcEEEcccccc
Q 036729 523 SELYLITLYNNSFKGPLPPSL-FQLKKLRIINFSHNKF 559 (970)
Q Consensus 523 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l 559 (970)
++|+.|++++|.++......+ ..++.++...+..+..
T Consensus 506 ~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 506 ETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp GGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 999999999999854333333 4577887777766543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.1e-23 Score=221.03 Aligned_cols=205 Identities=23% Similarity=0.236 Sum_probs=144.3
Q ss_pred CcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccC
Q 036729 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRG 699 (970)
Q Consensus 620 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 699 (970)
.+.++++++.++. +|..+. +++++|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4455555555553 333332 3456666666666555555566666666666666666655445556666666666666
Q ss_pred CcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccC
Q 036729 700 NNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI 779 (970)
Q Consensus 700 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~i 779 (970)
|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..++.|+. |++++|.+++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE-LRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce-eEecCCcCcEeC
Confidence 6666555555666667777777777776666666677777777777777777555555677777777 778888887777
Q ss_pred CccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 780 PPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 780 p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+..|.++++|++|++++|++++..+..+..+++|+.|++++|++.|.++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 7778899999999999999998777789999999999999999999886
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2e-23 Score=222.28 Aligned_cols=209 Identities=21% Similarity=0.220 Sum_probs=171.0
Q ss_pred cCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEc
Q 036729 594 RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDL 673 (970)
Q Consensus 594 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 673 (970)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777888888777766667788888888888888888777777888888888888888888777777888888888888
Q ss_pred ccCcCcCCCCCCCCCCCcceEEEccCCcCccc-CCcccccccccceeccCCCccccccchhhhcccCCc----EEECccc
Q 036729 674 SSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGK-IPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY----ELRLSEN 748 (970)
Q Consensus 674 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~Ls~N 748 (970)
++|++.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..++.|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888877776788888888888888888764 578888888999999999988888777777777776 8999999
Q ss_pred cccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccC
Q 036729 749 FFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP 804 (970)
Q Consensus 749 ~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p 804 (970)
++++..+..+ ....|+. |++++|.+++..+..++++++|+.|++++|++++..|
T Consensus 188 ~l~~~~~~~~-~~~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAF-KEIRLKE-LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSS-CSCCEEE-EECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCcccc-CCCcccE-EECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9986555444 3447887 9999999998777778999999999999999987543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=6.9e-24 Score=224.92 Aligned_cols=227 Identities=19% Similarity=0.173 Sum_probs=183.6
Q ss_pred CCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcc
Q 036729 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLS 674 (970)
Q Consensus 595 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 674 (970)
.+..+++..+.+... .....+++|+.|++++|.++.. +.+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 344555666555433 3456778888888888887742 3477788888888888888764 367788888888888
Q ss_pred cCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccC
Q 036729 675 SNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSI 754 (970)
Q Consensus 675 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i 754 (970)
+|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 88888877777888888888899888888777777888888999999999888888777888899999999999998777
Q ss_pred chhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCCccccCC
Q 036729 755 PADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGF 834 (970)
Q Consensus 755 p~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~ 834 (970)
|..++.++.|+. |++++|.+++..|..++.+++|+.|++++|.+.+. ++.|+.++++.|.++|.+|..+...
T Consensus 174 ~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 174 EGVFDKLTQLKD-LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHHhcCCccCCE-EECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 777888888988 99999999988888889999999999999988865 4468899999999999999766544
Q ss_pred C
Q 036729 835 P 835 (970)
Q Consensus 835 ~ 835 (970)
.
T Consensus 246 ~ 246 (272)
T 3rfs_A 246 A 246 (272)
T ss_dssp C
T ss_pred C
Confidence 3
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.1e-23 Score=218.22 Aligned_cols=185 Identities=24% Similarity=0.259 Sum_probs=100.1
Q ss_pred cccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccc
Q 036729 590 LAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIG 669 (970)
Q Consensus 590 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 669 (970)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 44445555555555555431 2455555555555555555555555555555555555555555555555555555555
Q ss_pred eEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECcccc
Q 036729 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENF 749 (970)
Q Consensus 670 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 749 (970)
+|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 55555555555555455555555555555555555544445555555555555555555555555555555555555555
Q ss_pred ccccCchhhhhhhhhHhhhhCCCCcccccCCcccc
Q 036729 750 FTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLG 784 (970)
Q Consensus 750 l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~ 784 (970)
+.+..| .++. ++++.|.++|.+|..++
T Consensus 217 ~~~~~~-------~l~~-l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 217 WDCTCP-------GIRY-LSEWINKHSGVVRNSAG 243 (272)
T ss_dssp BCCCTT-------TTHH-HHHHHHHTGGGBBCTTS
T ss_pred ccccCc-------HHHH-HHHHHHhCCCcccCccc
Confidence 554322 2333 44445555555554444
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.8e-23 Score=218.77 Aligned_cols=207 Identities=23% Similarity=0.202 Sum_probs=155.0
Q ss_pred cccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcce
Q 036729 614 FGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL 693 (970)
Q Consensus 614 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 693 (970)
+.++++++++++++|.++. +|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4556666666666666663 343332 4667777777777666666677777777777777777654332 5677777
Q ss_pred EEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCC
Q 036729 694 KLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKN 773 (970)
Q Consensus 694 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N 773 (970)
+|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..+..++.|+. |+|++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK-LSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE-EECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE-EECCCC
Confidence 7777777776 45666777777778888888777777777777888888888888888666666777888887 888888
Q ss_pred cccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 774 NFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 774 ~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
.+++..+..|..+++|+.|+|++|+++ .+|..+..+..|+.+++++|++.|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 888666667788999999999999998 688888888999999999999998875
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=9e-25 Score=240.34 Aligned_cols=235 Identities=15% Similarity=0.143 Sum_probs=140.1
Q ss_pred CCCCccceEecCCCCCEEEEECCCCCCccccccCccCC--CCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCC
Q 036729 52 HMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNL--TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGK 129 (970)
Q Consensus 52 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~ 129 (970)
-|.+|.++.|+ ...++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 35 vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 35579999875 345778888887766 3344555 6778888888777766554 45677777777777777654
Q ss_pred -CCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhcccc-cccc-CCCccccCCceeeEEEcCCC-cCCCC-Ccc
Q 036729 130 -IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC-QLNG-SIPVEIGNLKHLTSLDLQMN-KLSGL-IPE 204 (970)
Q Consensus 130 -~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~-~~~~-~~p~~l~~l~~L~~L~Ls~n-~i~~~-~~~ 204 (970)
+|..+..+++|++|++++|.+.+..|..++++++|++|++++| .+++ .++..+.++++|++|++++| .+++. .+.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 6666677777777777777776666666666777777777776 4543 24445566666666666666 55543 344
Q ss_pred cccCCc-cccccccccc--ccC-CCCcccccCCCCCcEEEccCCc-CccccCccccCCCCCCEEEccCcc-ccccCCccc
Q 036729 205 AIHGCE-ELQKFAASNN--MLE-GTIPSSIVLLKSLQILNLANNS-LSGSIPVELSHLFNLRYLNLLGNI-FDGEIPSEL 278 (970)
Q Consensus 205 ~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~l 278 (970)
.+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 455555 5555555555 233 2334444455555555555555 444444445555555555555553 111111234
Q ss_pred cCCCCccEEECcCC
Q 036729 279 NKLAQLEELDLSKN 292 (970)
Q Consensus 279 ~~l~~L~~L~L~~n 292 (970)
+++++|++|++++|
T Consensus 269 ~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 269 GEIPTLKTLQVFGI 282 (336)
T ss_dssp GGCTTCCEEECTTS
T ss_pred hcCCCCCEEeccCc
Confidence 44455555555544
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=8.8e-22 Score=210.14 Aligned_cols=203 Identities=25% Similarity=0.231 Sum_probs=135.6
Q ss_pred ccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccce
Q 036729 591 AMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGE 670 (970)
Q Consensus 591 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 670 (970)
..+++++.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+. +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 34445555555555555 2343332 4566666666666666566666666666666666666643322 55666777
Q ss_pred EEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccc
Q 036729 671 LDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFF 750 (970)
Q Consensus 671 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 750 (970)
|++++|++. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 777777766 4555666677777777777777766666677777777777777777766666677777777777777777
Q ss_pred cccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCcc
Q 036729 751 TGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG 801 (970)
Q Consensus 751 ~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~ 801 (970)
++..+..+..++.|+. |++++|.++ .+|..+..+.+|+.++|++|.+..
T Consensus 161 ~~l~~~~~~~l~~L~~-L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 161 TELPAGLLNGLENLDT-LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCCTTTTTTCTTCCE-EECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CccCHHHhcCcCCCCE-EECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 7544455566777776 777777777 667777777888888888888764
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=6.3e-22 Score=207.15 Aligned_cols=192 Identities=25% Similarity=0.274 Sum_probs=128.4
Q ss_pred CCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCC
Q 036729 52 HMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIP 131 (970)
Q Consensus 52 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p 131 (970)
+||.|.|.+|.. ..+.++++++.++ .+|..+. +.++.|+|++|.+.+..+..++++++|++|+|++|.+.+..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 588999999963 3446788888887 4454444 578889999888888777788888888888888888887777
Q ss_pred cCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcc
Q 036729 132 PEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211 (970)
Q Consensus 132 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 211 (970)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------- 146 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI---------- 146 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----------
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc----------
Confidence 7778888888888888877655555555555555555555555544443445555555555555555444
Q ss_pred cccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCcccccc
Q 036729 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGE 273 (970)
Q Consensus 212 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 273 (970)
.+..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 147 --------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 --------------PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred --------------CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 444455555666666666666655555566666666666666666544
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.2e-23 Score=233.27 Aligned_cols=253 Identities=22% Similarity=0.269 Sum_probs=178.0
Q ss_pred EECCCCCCCCCCCcccccCcCCCceeccCccccCCCC----cccccCC-CCcEEEccCCcCccCCcccCcCc-----Ccc
Q 036729 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP----SEFGKLT-ELNFLDLSFNSFTGQIAPQLSKC-----AKL 644 (970)
Q Consensus 575 L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~~-----~~L 644 (970)
+++++|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666666666666667777777777776555 5666676 77778887777777666665554 778
Q ss_pred cEEEccCCcccCCccccccc----c-CccceEEcccCcCcCCCCCCCC----C-CCcceEEEccCCcCcccCCc----cc
Q 036729 645 AHLLLSNNELTGTIPFWLGS----L-QEIGELDLSSNNFNGTVPAEIG----N-CSKLLKLSLRGNNLSGKIPP----EI 710 (970)
Q Consensus 645 ~~L~L~~n~l~~~~p~~l~~----l-~~L~~L~Ls~N~l~~~~p~~l~----~-l~~L~~L~L~~N~l~~~~~~----~l 710 (970)
++|++++|.+++..+..+.. + ++|++|++++|++++..+..+. . .++|++|++++|.+++..+. .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888777666654433 3 6788888888887765443332 2 35788888888887754333 33
Q ss_pred cccc-ccceeccCCCccccccchhhhc----c-cCCcEEECcccccccc----Cchhhhhh-hhhHhhhhCCCCcccccC
Q 036729 711 GNLT-ALNVLNLQRNSLSGNIPSTIQQ----C-KKLYELRLSENFFTGS----IPADLGRL-TELQVILDLSKNNFSGEI 779 (970)
Q Consensus 711 ~~l~-~L~~L~L~~N~l~~~~p~~~~~----l-~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~~L~ls~N~l~g~i 779 (970)
..++ +|++|++++|++++..+..+.. + ++|+.|||++|.+++. ++..+... +.|+. |||++|.+++..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~-L~Ls~N~l~~~~ 241 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS-LNLCLNCLHGPS 241 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE-EECCSSCCCCCC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE-EECcCCCCCcHH
Confidence 4444 7888888888887777654443 3 5888888888888763 45555553 47877 888888888654
Q ss_pred C----ccccCCCCCCEEeCCCCcCccc-------cCcccCCCCcCcEEecCCCcccccCC
Q 036729 780 P----PSLGSLLKLERLNISYNQLQGQ-------VPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 780 p----~~~~~l~~L~~L~ls~N~l~~~-------~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+ ..+..+++|+.|++++|.+.+. ++..+..+++|++||+++|++.+..|
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 4 3456788999999999985443 34567888999999999999988755
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3e-22 Score=216.88 Aligned_cols=203 Identities=20% Similarity=0.208 Sum_probs=164.0
Q ss_pred CCCCcEEEccCCcCccCCcccC--cCcCcccEEEccCCcccCCcc----ccccccCccceEEcccCcCcCCCCCCCCCCC
Q 036729 617 LTELNFLDLSFNSFTGQIAPQL--SKCAKLAHLLLSNNELTGTIP----FWLGSLQEIGELDLSSNNFNGTVPAEIGNCS 690 (970)
Q Consensus 617 l~~L~~L~Ls~n~l~~~~~~~l--~~~~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 690 (970)
+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..|+.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568888888888887777777 778888888888888876544 3345688899999999999888888888999
Q ss_pred cceEEEccCCcCccc---C-CcccccccccceeccCCCccccccc--h-hhhcccCCcEEECccccccccCchhhhhh--
Q 036729 691 KLLKLSLRGNNLSGK---I-PPEIGNLTALNVLNLQRNSLSGNIP--S-TIQQCKKLYELRLSENFFTGSIPADLGRL-- 761 (970)
Q Consensus 691 ~L~~L~L~~N~l~~~---~-~~~l~~l~~L~~L~L~~N~l~~~~p--~-~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l-- 761 (970)
+|++|++++|++.+. . +..+..+++|++|++++|+++...+ . .+..+++|++|||++|++++.+|..++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 999999999987652 2 2334678899999999999864322 1 35788999999999999998888888877
Q ss_pred -hhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccc
Q 036729 762 -TELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQG 825 (970)
Q Consensus 762 -~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g 825 (970)
+.|+. |++++|.++ .+|..+. ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 250 ~~~L~~-L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNS-LNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCC-EECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCE-EECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 58888 999999999 7787775 7999999999999974 33 5778999999999999875
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=6.2e-24 Score=238.13 Aligned_cols=242 Identities=19% Similarity=0.290 Sum_probs=168.4
Q ss_pred CCcccccCcCCCceeccCccccCCCC----cccccCCCCcEEEccCC---cCccCCcccC-------cCcCcccEEEccC
Q 036729 586 IPSELAMSRNLSRLRLAHNHLTGNIP----SEFGKLTELNFLDLSFN---SFTGQIAPQL-------SKCAKLAHLLLSN 651 (970)
Q Consensus 586 ~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~n---~l~~~~~~~l-------~~~~~L~~L~L~~ 651 (970)
++..+..+++|+.|++++|.++...+ ..+..+++|++|++++| ++++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34445555666666666666554322 23456666777777664 3344444433 5667777777777
Q ss_pred CcccC----CccccccccCccceEEcccCcCcCCCCCCC----CCC---------CcceEEEccCCcCc-ccCC---ccc
Q 036729 652 NELTG----TIPFWLGSLQEIGELDLSSNNFNGTVPAEI----GNC---------SKLLKLSLRGNNLS-GKIP---PEI 710 (970)
Q Consensus 652 n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l---------~~L~~L~L~~N~l~-~~~~---~~l 710 (970)
|.+++ .+|..+..+++|++|+|++|.+.+..+..+ ..+ ++|++|++++|+++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 77766 355566677777777777777754322222 223 77888888888776 3333 355
Q ss_pred ccccccceeccCCCcccc-----ccchhhhcccCCcEEECcccccc----ccCchhhhhhhhhHhhhhCCCCccccc---
Q 036729 711 GNLTALNVLNLQRNSLSG-----NIPSTIQQCKKLYELRLSENFFT----GSIPADLGRLTELQVILDLSKNNFSGE--- 778 (970)
Q Consensus 711 ~~l~~L~~L~L~~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~~L~ls~N~l~g~--- 778 (970)
..+++|++|++++|+++. ..|..+..+++|+.|+|++|.++ +.+|..+..++.|+. |+|++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~-L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE-LGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE-EECTTCCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE-EECCCCCCchhhHH
Confidence 667788888888888762 34446777888888888888886 667778888888887 88888888765
Q ss_pred -CCccc--cCCCCCCEEeCCCCcCcc----ccCccc-CCCCcCcEEecCCCcccccCC
Q 036729 779 -IPPSL--GSLLKLERLNISYNQLQG----QVPASL-GKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 779 -ip~~~--~~l~~L~~L~ls~N~l~~----~~p~~l-~~l~~L~~l~ls~N~l~g~~p 828 (970)
+|..+ +.+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 56666 448999999999999998 588887 668999999999999987664
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=8.2e-22 Score=204.74 Aligned_cols=197 Identities=17% Similarity=0.181 Sum_probs=143.4
Q ss_pred CCcEEEccCCcCccCCcccCcCcCcccEEEccCCc-ccCCccccccccCccceEEccc-CcCcCCCCCCCCCCCcceEEE
Q 036729 619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNE-LTGTIPFWLGSLQEIGELDLSS-NNFNGTVPAEIGNCSKLLKLS 696 (970)
Q Consensus 619 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~ 696 (970)
+|++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776666667777777777777775 6655555677777777777777 777766666677777777777
Q ss_pred ccCCcCcccCCcccccccccc---eeccCCC-ccccccchhhhcccCCc-EEECccccccccCchhhhhhhhhHhhhhCC
Q 036729 697 LRGNNLSGKIPPEIGNLTALN---VLNLQRN-SLSGNIPSTIQQCKKLY-ELRLSENFFTGSIPADLGRLTELQVILDLS 771 (970)
Q Consensus 697 L~~N~l~~~~~~~l~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls 771 (970)
+++|.+++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ .|++++|+++ .+|......+.|+. |+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~-L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA-VYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEE-EECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCE-EEcC
Confidence 77777775 444 66666666 7888888 77776666777888888 8888888887 55554444477777 8888
Q ss_pred CCc-ccccCCccccCC-CCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCc
Q 036729 772 KNN-FSGEIPPSLGSL-LKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNH 822 (970)
Q Consensus 772 ~N~-l~g~ip~~~~~l-~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 822 (970)
+|. +++..+..|+++ ++|+.||+++|++++. |.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 884 887777788888 8999999999998854 433 56678888887763
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=3.5e-21 Score=201.50 Aligned_cols=160 Identities=26% Similarity=0.292 Sum_probs=107.0
Q ss_pred ccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECc
Q 036729 667 EIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS 746 (970)
Q Consensus 667 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 746 (970)
.++.|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 44555555555554444445555555555555555555555555555555555555555555555555566666666666
Q ss_pred cccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccccc
Q 036729 747 ENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQ 826 (970)
Q Consensus 747 ~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 826 (970)
+|++++..+..+..++.|+. |+|++|.+++..+..|+.+++|++|+|++|++++..|..+..+++|++|++++|+++|.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKE-LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCCcChhHhccCCcccE-EECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66666555555566666666 77777777766666788888999999999999888888888899999999999999888
Q ss_pred C
Q 036729 827 L 827 (970)
Q Consensus 827 ~ 827 (970)
.
T Consensus 195 ~ 195 (251)
T 3m19_A 195 R 195 (251)
T ss_dssp S
T ss_pred c
Confidence 3
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.7e-23 Score=225.92 Aligned_cols=252 Identities=22% Similarity=0.310 Sum_probs=189.0
Q ss_pred ccEEECCCCCCCCCCCcccccC--cCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccC-CcccCcCcCcccEEE
Q 036729 572 LTALDLTNNSFSGPIPSELAMS--RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ-IAPQLSKCAKLAHLL 648 (970)
Q Consensus 572 L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~ 648 (970)
++.++++++.+. +..+..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455666665554 3444555 6778888888887766554 45678888888888887765 666778888888888
Q ss_pred ccCCcccCCccccccccCccceEEcccC-cCcCC-CCCCCCCCCcceEEEccCC-cCccc-CCccccccc-ccceeccCC
Q 036729 649 LSNNELTGTIPFWLGSLQEIGELDLSSN-NFNGT-VPAEIGNCSKLLKLSLRGN-NLSGK-IPPEIGNLT-ALNVLNLQR 723 (970)
Q Consensus 649 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~-~L~~L~L~~ 723 (970)
+++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888888777777888888888888888 56652 5555677888888888888 88754 456677888 899999998
Q ss_pred C--ccc-cccchhhhcccCCcEEECcccc-ccccCchhhhhhhhhHhhhhCCCCc-ccccCCccccCCCCCCEEeCCCCc
Q 036729 724 N--SLS-GNIPSTIQQCKKLYELRLSENF-FTGSIPADLGRLTELQVILDLSKNN-FSGEIPPSLGSLLKLERLNISYNQ 798 (970)
Q Consensus 724 N--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~~L~ls~N~-l~g~ip~~~~~l~~L~~L~ls~N~ 798 (970)
| .++ +.+|..+..+++|+.|++++|. +++..+..+..++.|+. |++++|. ++......++++++|+.|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~-L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH-LSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE-EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE-eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 8 455 5567777888999999999998 77788888888999988 9999985 32222236788999999999999
Q ss_pred CccccCcccCCC-CcCcEEecCCCcccccCCcccc
Q 036729 799 LQGQVPASLGKL-TSLHVLNLSNNHLQGQLPLTFS 832 (970)
Q Consensus 799 l~~~~p~~l~~l-~~L~~l~ls~N~l~g~~p~~~~ 832 (970)
++. ..+..+ ..+..|++++|++++..|..+.
T Consensus 283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 332 233444 3477778999999999886543
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1e-23 Score=236.39 Aligned_cols=248 Identities=19% Similarity=0.260 Sum_probs=148.7
Q ss_pred CCccccCCCCCcEEEccccccccccC-----CCCCCCcccEEECCCCCC---CCCCCcccccCcCCCceeccCccccCCC
Q 036729 539 LPPSLFQLKKLRIINFSHNKFSGSIY-----PLTGSNSLTALDLTNNSF---SGPIPSELAMSRNLSRLRLAHNHLTGNI 610 (970)
Q Consensus 539 ~~~~~~~l~~L~~L~ls~n~l~~~~~-----~~~~~~~L~~L~l~~n~l---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 610 (970)
++..+..+++|+.|++++|.+....+ .+..+++|+.|++++|.+ ++.+|..+.. +
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~-----------------l 86 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL-----------------L 86 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH-----------------H
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH-----------------H
Confidence 44455666777777777777654321 244555666666655432 2233332200 0
Q ss_pred CcccccCCCCcEEEccCCcCcc----CCcccCcCcCcccEEEccCCcccCCcccccc----cc---------CccceEEc
Q 036729 611 PSEFGKLTELNFLDLSFNSFTG----QIAPQLSKCAKLAHLLLSNNELTGTIPFWLG----SL---------QEIGELDL 673 (970)
Q Consensus 611 p~~~~~l~~L~~L~Ls~n~l~~----~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~----~l---------~~L~~L~L 673 (970)
...+..+++|++|++++|.+++ .++..+..+++|++|+|++|.+++..+..+. .+ ++|++|++
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 0112455566666666666554 2444555566666666666665433322222 22 66666666
Q ss_pred ccCcCc-CCCC---CCCCCCCcceEEEccCCcCc--c---cCCcccccccccceeccCCCccc----cccchhhhcccCC
Q 036729 674 SSNNFN-GTVP---AEIGNCSKLLKLSLRGNNLS--G---KIPPEIGNLTALNVLNLQRNSLS----GNIPSTIQQCKKL 740 (970)
Q Consensus 674 s~N~l~-~~~p---~~l~~l~~L~~L~L~~N~l~--~---~~~~~l~~l~~L~~L~L~~N~l~----~~~p~~~~~l~~L 740 (970)
++|+++ +.+| ..+..+++|++|++++|.++ | ..|..+..+++|++|+|++|.++ +.+|..+..+++|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 666665 2233 23445666777777777665 2 23335666777777777777775 5566667777777
Q ss_pred cEEECcccccccc----Cchhhhh--hhhhHhhhhCCCCcccc----cCCccc-cCCCCCCEEeCCCCcCccccC
Q 036729 741 YELRLSENFFTGS----IPADLGR--LTELQVILDLSKNNFSG----EIPPSL-GSLLKLERLNISYNQLQGQVP 804 (970)
Q Consensus 741 ~~L~Ls~N~l~~~----ip~~l~~--l~~L~~~L~ls~N~l~g----~ip~~~-~~l~~L~~L~ls~N~l~~~~p 804 (970)
+.|+|++|.+++. +|..+.. ++.|+. |+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~-L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQT-LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE-EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEE-EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7777777777765 4555533 677776 7888888776 477766 668899999999999987764
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=4.1e-23 Score=228.91 Aligned_cols=81 Identities=21% Similarity=0.180 Sum_probs=38.2
Q ss_pred EECCCCCCccccccCccCCCCCcEEECCCCCCCCCCC----ccccCCC-CCcEeecCCCcCcCCCCcCCCCC-----CCC
Q 036729 71 LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIP----SELGQLQ-NLRILLLYSNSFSGKIPPEIGFL-----NKL 140 (970)
Q Consensus 71 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p----~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~~l-----~~L 140 (970)
.+|+.+.++|.++..+...++|++|||++|.+++..+ ..+..++ +|++|+|++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3445555555554444444445555555555544333 3444444 45555555555544433333332 444
Q ss_pred cEEEccCccCC
Q 036729 141 QVLRIGDNLLW 151 (970)
Q Consensus 141 ~~L~L~~n~~~ 151 (970)
++|++++|.+.
T Consensus 83 ~~L~Ls~n~l~ 93 (362)
T 3goz_A 83 TSLNLSGNFLS 93 (362)
T ss_dssp CEEECCSSCGG
T ss_pred cEEECcCCcCC
Confidence 44444444443
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=7.5e-22 Score=213.72 Aligned_cols=201 Identities=22% Similarity=0.234 Sum_probs=131.6
Q ss_pred CCCceeccCccccCCCCccc--ccCCCCcEEEccCCcCccCCc----ccCcCcCcccEEEccCCcccCCccccccccCcc
Q 036729 595 NLSRLRLAHNHLTGNIPSEF--GKLTELNFLDLSFNSFTGQIA----PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEI 668 (970)
Q Consensus 595 ~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 668 (970)
+|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 35555555555555555444 555555555555555554333 223345666666666666666666666666666
Q ss_pred ceEEcccCcCcCC---C-CCCCCCCCcceEEEccCCcCcccCC--c-ccccccccceeccCCCccccccchhhhcc---c
Q 036729 669 GELDLSSNNFNGT---V-PAEIGNCSKLLKLSLRGNNLSGKIP--P-EIGNLTALNVLNLQRNSLSGNIPSTIQQC---K 738 (970)
Q Consensus 669 ~~L~Ls~N~l~~~---~-p~~l~~l~~L~~L~L~~N~l~~~~~--~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l---~ 738 (970)
++|++++|++.+. . +..+..+++|++|++++|+++...+ . .+..+++|++|++++|++++..|..+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 6666666665541 1 2223567777777777777753211 1 24566788888888888887777666666 5
Q ss_pred CCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCcc
Q 036729 739 KLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG 801 (970)
Q Consensus 739 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~ 801 (970)
+|+.|+|++|+++ .+|..+. +.|+. |||++|.+++. |. +..+++|+.|++++|+++.
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~-L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRV-LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSC-EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCE-EECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8888888888888 6777664 67877 89999999864 33 6788999999999999874
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.3e-21 Score=200.13 Aligned_cols=196 Identities=18% Similarity=0.212 Sum_probs=129.0
Q ss_pred CCCceeccCccccCCCCcccccCCCCcEEEccCCc-CccCCcccCcCcCcccEEEccC-CcccCCccccccccCccceEE
Q 036729 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS-FTGQIAPQLSKCAKLAHLLLSN-NELTGTIPFWLGSLQEIGELD 672 (970)
Q Consensus 595 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~~~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 672 (970)
+++.|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555566666666666666665 6655555666666777777766 666655556666667777777
Q ss_pred cccCcCcCCCCCCCCCCCcce---EEEccCC-cCcccCCcccccccccc-eeccCCCccccccchhhhcccCCcEEECcc
Q 036729 673 LSSNNFNGTVPAEIGNCSKLL---KLSLRGN-NLSGKIPPEIGNLTALN-VLNLQRNSLSGNIPSTIQQCKKLYELRLSE 747 (970)
Q Consensus 673 Ls~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 747 (970)
+++|++++ +|. |..+++|+ +|++++| .+++..+..|..+++|+ +|++++|+++...+..+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 77777665 444 66666666 7777777 66666555667777777 7777777776433334444 6677777777
Q ss_pred cc-ccccCchhhhhh-hhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCC
Q 036729 748 NF-FTGSIPADLGRL-TELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN 797 (970)
Q Consensus 748 N~-l~~~ip~~l~~l-~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N 797 (970)
|+ +++..+..+..+ +.|+. |++++|.+++ +|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~-L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSL-LDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSE-EECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcE-EECCCCcccc-CChh--HhccCceeeccCc
Confidence 74 775555666777 77776 7777777774 4433 5678888888776
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5.2e-21 Score=206.42 Aligned_cols=192 Identities=27% Similarity=0.364 Sum_probs=87.2
Q ss_pred CcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEE
Q 036729 593 SRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD 672 (970)
Q Consensus 593 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 672 (970)
+++|+.|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. + .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence 3444444444444432 22 34444555555555555443322 44445555555555554432 1 344444455555
Q ss_pred cccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccc
Q 036729 673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG 752 (970)
Q Consensus 673 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 752 (970)
+++|++++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 114 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~- 186 (308)
T 1h6u_A 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS- 186 (308)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred CCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC-
Confidence 55554443211 4444444444444444443322 4444444444444444443222 444444444444444444
Q ss_pred cCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccc
Q 036729 753 SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQG 825 (970)
Q Consensus 753 ~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g 825 (970)
+..+ +..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 187 ------------------------~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 ------------------------DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ------------------------CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ------------------------cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 3221 4445555555555555554332 4455555555555555544
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=8.5e-21 Score=204.72 Aligned_cols=176 Identities=28% Similarity=0.375 Sum_probs=110.9
Q ss_pred cccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcce
Q 036729 614 FGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL 693 (970)
Q Consensus 614 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 693 (970)
+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++.+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~------------ 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV------------ 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC------------
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc------------
Confidence 3455666666666666654 22 35555566666666665554433 55555555555555555432
Q ss_pred EEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCC
Q 036729 694 KLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKN 773 (970)
Q Consensus 694 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N 773 (970)
..+..+++|++|++++|++++.. .+..+++|+.|++++|.+++..+ +..++.|+. |++++|
T Consensus 101 --------------~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~-L~l~~n 161 (308)
T 1h6u_A 101 --------------SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQY-LSIGNA 161 (308)
T ss_dssp --------------GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE-EECCSS
T ss_pred --------------hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccE-EEccCC
Confidence 13444445555555555554432 15555556666666666654332 556666666 667777
Q ss_pred cccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 774 NFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 774 ~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
.+++.. . +..+++|+.|++++|++++..| +..+++|++|++++|++++..|
T Consensus 162 ~l~~~~-~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 162 QVSDLT-P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp CCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred cCCCCh-h-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc
Confidence 766533 3 7889999999999999997655 8899999999999999998765
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5e-20 Score=186.68 Aligned_cols=192 Identities=21% Similarity=0.228 Sum_probs=131.3
Q ss_pred ceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCc
Q 036729 598 RLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN 677 (970)
Q Consensus 598 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 677 (970)
.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3444444444 233322 2467777777777776666666777777777777777776666666777777777777777
Q ss_pred CcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchh
Q 036729 678 FNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPAD 757 (970)
Q Consensus 678 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~ 757 (970)
+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~--- 164 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC--- 164 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT---
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC---
Confidence 77666666777777888888888777666666777778888888888887776666777888888888888777543
Q ss_pred hhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccC
Q 036729 758 LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP 804 (970)
Q Consensus 758 l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p 804 (970)
+.++. ++++.|.++|.+|..++.++. ++..+...|..+
T Consensus 165 ----~~l~~-L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~ 202 (208)
T 2o6s_A 165 ----PGIRY-LSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPV 202 (208)
T ss_dssp ----TTTHH-HHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBG
T ss_pred ----CCHHH-HHHHHHhCCceeeccCccccC----CccccccCCCcc
Confidence 35555 777888888888877776654 444444444333
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.5e-20 Score=217.29 Aligned_cols=207 Identities=23% Similarity=0.303 Sum_probs=139.6
Q ss_pred CCCCCCCCC-----Cccce-EecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEe
Q 036729 46 NWSARAHMC-----SWHGV-TCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRIL 119 (970)
Q Consensus 46 ~w~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L 119 (970)
+|....++| .|.|+ .|. ..+++.|+|+++.+++ +|..+ +++|++|+|++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 454445567 69999 786 3578999999999987 66655 378999999999888 566 557888899
Q ss_pred ecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCC
Q 036729 120 LLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLS 199 (970)
Q Consensus 120 ~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~ 199 (970)
+|++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|+++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 999888886 776 554 88888888887765 554 45666666666666653 343 3455555555555555
Q ss_pred CCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCC-------CEEEccCccccc
Q 036729 200 GLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNL-------RYLNLLGNIFDG 272 (970)
Q Consensus 200 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~L~~n~~~~ 272 (970)
+ +|. +. ++|+.|+|++|.++ .+|. +.. +| +.|++++|.++
T Consensus 174 ~-------------------------lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~- 220 (571)
T 3cvr_A 174 F-------------------------LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT- 220 (571)
T ss_dssp C-------------------------CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred C-------------------------cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence 4 333 33 55666666666665 3444 333 45 77777777777
Q ss_pred cCCccccCCCCccEEECcCCcCccccccccCCCC
Q 036729 273 EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLK 306 (970)
Q Consensus 273 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 306 (970)
.+|..+..+++|++|++++|.+++.+|..+..++
T Consensus 221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 3566666788888888888888777776655443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=7.4e-20 Score=185.44 Aligned_cols=185 Identities=24% Similarity=0.230 Sum_probs=129.2
Q ss_pred CCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCc
Q 036729 53 MCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPP 132 (970)
Q Consensus 53 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~ 132 (970)
.|.|++|.|... +++ .+|..+ .++|++|++++|.+++..+..++.+++|++|++++|.+.+..+.
T Consensus 6 ~C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 378999999742 121 122222 34677777777777765555677777777777777777754445
Q ss_pred CCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCccc
Q 036729 133 EIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEEL 212 (970)
Q Consensus 133 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 212 (970)
.+..+++|++|++++|.+.+..+..+.++++|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 56777777777777777765555566777777777777777776656567777777788887777777766667777778
Q ss_pred ccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCC
Q 036729 213 QKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFN 259 (970)
Q Consensus 213 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 259 (970)
++|++++|.+.+ .+++|++|+++.|+++|.+|.+++.++.
T Consensus 151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 888777776543 3456777777778888777777776654
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=9.7e-20 Score=210.45 Aligned_cols=188 Identities=24% Similarity=0.370 Sum_probs=136.2
Q ss_pred CCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcc
Q 036729 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLS 674 (970)
Q Consensus 595 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 674 (970)
+++.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888876 665553 67888888888888 455 346788888888888887 555 554 78888888
Q ss_pred cCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccC
Q 036729 675 SNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSI 754 (970)
Q Consensus 675 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i 754 (970)
+|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|. +. ++|+.|+|++|+++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 888886 554 57788888888888876 444 46778888888888876 454 54 77888888888887 56
Q ss_pred chhhhhhhhh-------HhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC
Q 036729 755 PADLGRLTEL-------QVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT 811 (970)
Q Consensus 755 p~~l~~l~~L-------~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~ 811 (970)
|. +.. .| +. |+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus 196 p~-~~~--~L~~~~~~L~~-L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIF-FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEE-EECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceE-EecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 65 544 45 55 777777777 4677777777777777777777777777666543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=6.7e-19 Score=193.83 Aligned_cols=238 Identities=21% Similarity=0.215 Sum_probs=140.0
Q ss_pred EECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCc-ccCcCcCcccE-EEccCC
Q 036729 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA-PQLSKCAKLAH-LLLSNN 652 (970)
Q Consensus 575 L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~-L~L~~n 652 (970)
++.++++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.+++|
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 344444444 234333 2456666666666665444556666777777777776655443 34566666554 445556
Q ss_pred cccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccC-CcCcccCCccccccc-ccceeccCCCcccccc
Q 036729 653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRG-NNLSGKIPPEIGNLT-ALNVLNLQRNSLSGNI 730 (970)
Q Consensus 653 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~ 730 (970)
+++...|..|..+++|++|++++|++.+..+..+....++..|++.+ +.+....+..|..+. .++.|++++|+++...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 66666666667777777777777777665555555566666666654 345544444555543 4666777777776444
Q ss_pred chhhhcccCCcEEECcc-ccccccCc-hhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccC
Q 036729 731 PSTIQQCKKLYELRLSE-NFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLG 808 (970)
Q Consensus 731 p~~~~~l~~L~~L~Ls~-N~l~~~ip-~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~ 808 (970)
+..| ...+|+.+++++ |.++ .+| ..|..++.|+. ||+++|.++...+.. +.+|+.|.+.++.--..+| .+.
T Consensus 171 ~~~f-~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~-LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 171 NSAF-NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVI-LDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp TTSS-TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSE-EECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred hhhc-cccchhHHhhccCCccc-CCCHHHhccCcccch-hhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 3333 345677777764 3444 444 34566777776 777777777433333 4455555555554444566 367
Q ss_pred CCCcCcEEecCCCc
Q 036729 809 KLTSLHVLNLSNNH 822 (970)
Q Consensus 809 ~l~~L~~l~ls~N~ 822 (970)
.+++|+.++++++.
T Consensus 244 ~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 244 KLVALMEASLTYPS 257 (350)
T ss_dssp TCCSCCEEECSCHH
T ss_pred hCcChhhCcCCCCc
Confidence 77888888887554
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=7.8e-19 Score=193.33 Aligned_cols=240 Identities=17% Similarity=0.129 Sum_probs=170.4
Q ss_pred EEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCC-cccccCCCCcE-EEccCC
Q 036729 551 IINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP-SEFGKLTELNF-LDLSFN 628 (970)
Q Consensus 551 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~Ls~n 628 (970)
.++.+++.++.....+ .+++++|++++|+++...+.+|..+++|++|+|++|++.+.+| ..|.+++++++ ++++.|
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 4445555554322222 2456677777777766555667778888888888887765554 45777777665 556678
Q ss_pred cCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEccc-CcCcCCCCCCCCCCC-cceEEEccCCcCcccC
Q 036729 629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSS-NNFNGTVPAEIGNCS-KLLKLSLRGNNLSGKI 706 (970)
Q Consensus 629 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~ 706 (970)
+++...|..|..+++|++|++++|+++...+..+....++..+++.+ +++....+..|..+. .++.|++++|+++...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 88887788888888888888888888877776677777788888865 456655556666664 6888999999988544
Q ss_pred CcccccccccceeccCC-CccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccC
Q 036729 707 PPEIGNLTALNVLNLQR-NSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGS 785 (970)
Q Consensus 707 ~~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~ 785 (970)
+. ....++|+.+++++ |.++...++.|..+++|+.||+++|+++...+..+.+++.|+. +++ +.++ .+| .+.+
T Consensus 171 ~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~-l~~--~~l~-~lP-~l~~ 244 (350)
T 4ay9_X 171 NS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA-RST--YNLK-KLP-TLEK 244 (350)
T ss_dssp TT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEEC-TTC--TTCC-CCC-CTTT
T ss_pred hh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhh-ccC--CCcC-cCC-Cchh
Confidence 44 44556788888875 5666555567889999999999999998655556777777765 443 3344 566 4788
Q ss_pred CCCCCEEeCCCCc
Q 036729 786 LLKLERLNISYNQ 798 (970)
Q Consensus 786 l~~L~~L~ls~N~ 798 (970)
+++|+.++++++.
T Consensus 245 l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 245 LVALMEASLTYPS 257 (350)
T ss_dssp CCSCCEEECSCHH
T ss_pred CcChhhCcCCCCc
Confidence 9999999998764
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=8.7e-19 Score=178.68 Aligned_cols=155 Identities=21% Similarity=0.235 Sum_probs=113.5
Q ss_pred eEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC-cccccccccceeccCCCccccccchhhhcccCCcEEECccc
Q 036729 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP-PEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSEN 748 (970)
Q Consensus 670 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 748 (970)
.+++++|.++. +|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|..+++|+.|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 44555555442 333221 234556666666655533 33566666666666666666666666777777777777777
Q ss_pred cccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 749 FFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 749 ~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
++++..|..+..++.|+. |+|++|.+++..|..|..+++|++|+|++|++++..|..+..+++|++|++++|+++|.++
T Consensus 92 ~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKT-LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCE-EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCE-EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 777666666777777777 7888888888888889999999999999999999999999999999999999999999998
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2e-18 Score=175.95 Aligned_cols=138 Identities=21% Similarity=0.238 Sum_probs=98.7
Q ss_pred CcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhh
Q 036729 690 SKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILD 769 (970)
Q Consensus 690 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ 769 (970)
++++.|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..++.|+. |+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~-L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL-LL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE-EE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE-EE
Confidence 34555555555555544445555555666666666665555566666666666666666666444444566666666 77
Q ss_pred CCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 770 LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 770 ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
|++|.+++..|..|..+++|+.|+|++|++++..|..+..+++|++|++++|++.|.++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 77777777777888889999999999999998888889999999999999999999887
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.3e-18 Score=192.30 Aligned_cols=180 Identities=28% Similarity=0.244 Sum_probs=106.4
Q ss_pred cEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCcccccc-ccCccceEEcccCcCcCCCCCCCCCCCcceEEEccC
Q 036729 621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLG-SLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRG 699 (970)
Q Consensus 621 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 699 (970)
+.++++++.++. +|..+. ..++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666653 343332 2355566666665555555554 555555555555555555555555555555555555
Q ss_pred CcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccC
Q 036729 700 NNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI 779 (970)
Q Consensus 700 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~i 779 (970)
|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+ |++|.+++..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~-------------------------L~~N~l~~l~ 152 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY-------------------------LSQNQISRFP 152 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-------------------------CCSSCCCSCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE-------------------------CCCCcCCeeC
Confidence 555544444455555555555555555544444454555555554 4555544332
Q ss_pred Cccc---cCCCCCCEEeCCCCcCccccCcccCCCCc--CcEEecCCCcccccCC
Q 036729 780 PPSL---GSLLKLERLNISYNQLQGQVPASLGKLTS--LHVLNLSNNHLQGQLP 828 (970)
Q Consensus 780 p~~~---~~l~~L~~L~ls~N~l~~~~p~~l~~l~~--L~~l~ls~N~l~g~~p 828 (970)
+..| ..+++|+.|||++|+|++..+..+..++. ++.|++++|++.|.+.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 2333 56888999999999998766677777776 4889999999999876
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=7.5e-18 Score=173.01 Aligned_cols=163 Identities=27% Similarity=0.296 Sum_probs=121.0
Q ss_pred CCCCCCCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCc
Q 036729 46 NWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125 (970)
Q Consensus 46 ~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 125 (970)
.|......|.|++|.|.. +.++ .+|..+. ++|++|+|++|.+++..|..+..+++|++|+|++|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 355566789999999973 2222 3444332 789999999999998888889999999999999999
Q ss_pred CcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCccc
Q 036729 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEA 205 (970)
Q Consensus 126 ~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~ 205 (970)
+....+..+..+++|++|+|++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 87544556788899999999998887666666777788888888887776 66777777777777777777777666555
Q ss_pred ccCCcccccccccccccCC
Q 036729 206 IHGCEELQKFAASNNMLEG 224 (970)
Q Consensus 206 l~~l~~L~~L~l~~n~l~~ 224 (970)
|..+++|+.|++++|.+..
T Consensus 155 ~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTCTTCCEEECTTSCBCT
T ss_pred HhCCCCCCEEEeeCCCccC
Confidence 6666666666666665543
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=7.2e-18 Score=173.16 Aligned_cols=137 Identities=25% Similarity=0.264 Sum_probs=89.1
Q ss_pred CcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhh
Q 036729 690 SKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILD 769 (970)
Q Consensus 690 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ 769 (970)
++|++|++++|.+++..|..+..+++|++|+|++|+++...+..|..+++|+.|+|++|++++..+..+..++.|+. |+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~-L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE-LF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe-Ee
Confidence 44444444444444444444444555555555555554444444455555555555555555444444555555555 66
Q ss_pred CCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 770 LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 770 ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
|++|.++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 6666666 567777888889999999999988777788889999999999999998886
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=4.3e-18 Score=199.18 Aligned_cols=189 Identities=22% Similarity=0.293 Sum_probs=106.4
Q ss_pred ccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccC
Q 036729 572 LTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSN 651 (970)
Q Consensus 572 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~ 651 (970)
+..+.+..+.+.+..+ +..++.|+.|++++|.+... | .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3344445554443322 34555666666666666532 2 45666666666666666665433 55666666666666
Q ss_pred CcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccc
Q 036729 652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP 731 (970)
Q Consensus 652 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p 731 (970)
|.+++. | .+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++..|
T Consensus 97 N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 666542 2 455566666666666666542 2355566666666666666543 445555666666666666655544
Q ss_pred hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccc
Q 036729 732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG 777 (970)
Q Consensus 732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g 777 (970)
+..+++|+.|+|++|++++. ..+..++.|+. |+|++|.+++
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~-L~L~~N~l~~ 211 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDV-LELFSQECLN 211 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSE-EECCSEEEEC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCE-EEccCCcCcC
Confidence 55566666666666665542 23555555555 5555555554
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=6.2e-18 Score=180.52 Aligned_cols=188 Identities=27% Similarity=0.354 Sum_probs=107.3
Q ss_pred CceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccC
Q 036729 597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSN 676 (970)
Q Consensus 597 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 676 (970)
..+.+..+.+++.. .+..+++|++|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 34445555444322 234566666777776666543 2 35556666666666666665433 555666666666666
Q ss_pred cCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCch
Q 036729 677 NFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA 756 (970)
Q Consensus 677 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~ 756 (970)
++++. | .+..+++|++|++++|.+++. .. +..+++|+.|++++|++++. .
T Consensus 101 ~l~~~-~-~l~~l~~L~~L~L~~n~i~~~--~~------------------------l~~l~~L~~L~l~~n~l~~~--~ 150 (291)
T 1h6t_A 101 KVKDL-S-SLKDLKKLKSLSLEHNGISDI--NG------------------------LVHLPQLESLYLGNNKITDI--T 150 (291)
T ss_dssp CCCCG-G-GGTTCTTCCEEECTTSCCCCC--GG------------------------GGGCTTCCEEECCSSCCCCC--G
T ss_pred cCCCC-h-hhccCCCCCEEECCCCcCCCC--hh------------------------hcCCCCCCEEEccCCcCCcc--h
Confidence 65542 1 245555555555555555432 23 44445555555555555432 3
Q ss_pred hhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccc
Q 036729 757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQG 825 (970)
Q Consensus 757 ~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g 825 (970)
.+..++.|+. |++++|.+++..| ++.+++|+.|++++|++++. | .+..+++|+.|++++|+++.
T Consensus 151 ~l~~l~~L~~-L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 151 VLSRLTKLDT-LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGCTTCSE-EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred hhccCCCCCE-EEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 4555555555 5566666554433 66777777777777777653 3 37777777777877777765
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.4e-17 Score=169.63 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=116.8
Q ss_pred CceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccC
Q 036729 597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSN 676 (970)
Q Consensus 597 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 676 (970)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 3444433 56777777777777766667777777888888888877777777788888888888888
Q ss_pred cCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECcccccccc
Q 036729 677 NFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGS 753 (970)
Q Consensus 677 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 753 (970)
++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 88866666677788888888888888877777888888888888888888887777788888888888888888753
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=3.6e-18 Score=182.39 Aligned_cols=189 Identities=21% Similarity=0.285 Sum_probs=147.4
Q ss_pred ccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccC
Q 036729 572 LTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSN 651 (970)
Q Consensus 572 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~ 651 (970)
+..+.+..+.+++.. .+..+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 344456666655432 345788999999999999854 3 58899999999999999997655 89999999999999
Q ss_pred CcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccc
Q 036729 652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP 731 (970)
Q Consensus 652 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p 731 (970)
|.+++. | .+..+++|++|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+
T Consensus 100 n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 100 NKVKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp SCCCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCCC-h-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 999873 3 489999999999999999975 4688899999999999999865 567777888888888888776654
Q ss_pred hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCcc
Q 036729 732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG 801 (970)
Q Consensus 732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~ 801 (970)
+..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++.
T Consensus 174 --l~~l~~L~~L~L~~N~i~~--------------------------l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISD--------------------------LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCB--------------------------CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred --hcCCCccCEEECCCCcCCC--------------------------Ch-hhccCCCCCEEECcCCcccC
Confidence 6677777777777776653 12 25566677777777777665
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=169.93 Aligned_cols=136 Identities=23% Similarity=0.213 Sum_probs=83.7
Q ss_pred CcEEEccCCcCccCCc-ccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEcc
Q 036729 620 LNFLDLSFNSFTGQIA-PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLR 698 (970)
Q Consensus 620 L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 698 (970)
+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 4555555555555433 234555556666666666555555555666666666666666665555556666666666666
Q ss_pred CCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCc
Q 036729 699 GNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP 755 (970)
Q Consensus 699 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip 755 (970)
+|++++..|..+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 666666666666666666666666666666666666667777777777777765443
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=8.2e-18 Score=196.81 Aligned_cols=236 Identities=23% Similarity=0.234 Sum_probs=174.7
Q ss_pred cEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCc
Q 036729 550 RIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS 629 (970)
Q Consensus 550 ~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 629 (970)
..+.+..+.+... ..+..++.|+.|++++|.+... + .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.
T Consensus 24 ~~l~l~~~~i~~~-~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 24 IKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHTTCSCTTSE-ECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHHhccCCCcccc-cchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 3344555555432 2345667889999999998754 2 58889999999999999987554 8899999999999999
Q ss_pred CccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcc
Q 036729 630 FTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPE 709 (970)
Q Consensus 630 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 709 (970)
+++. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++..|
T Consensus 99 l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 99 IKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp CCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence 9863 3688899999999999999874 4588899999999999999876 568889999999999999987766
Q ss_pred cccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCC
Q 036729 710 IGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKL 789 (970)
Q Consensus 710 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L 789 (970)
+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++.....+..+..+...-++ .+.....
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l------------~g~~~~~ 236 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT------------DGSLVTP 236 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCS------------SSCBCCC
T ss_pred hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEeccccccc------------CCCCcCc
Confidence 88899999999999999875 358889999999999999986544333333322210011 1222334
Q ss_pred CEEeCCCCcCccccCcccCCCCc
Q 036729 790 ERLNISYNQLQGQVPASLGKLTS 812 (970)
Q Consensus 790 ~~L~ls~N~l~~~~p~~l~~l~~ 812 (970)
+.+...++...|.+|..+..+..
T Consensus 237 ~~i~~~g~~~~~~i~~~l~~~~~ 259 (605)
T 1m9s_A 237 EIISDDGDYEKPNVKWHLPEFTN 259 (605)
T ss_dssp SEESTTCEEETTEEECCCSSCCS
T ss_pred hhcccCCcccCCcceeccccccc
Confidence 45555556666666666655543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.5e-17 Score=183.89 Aligned_cols=176 Identities=25% Similarity=0.226 Sum_probs=90.3
Q ss_pred cEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccc-cCCCCcEEEccCCcCccCCcccCcCcCcccEEEccC
Q 036729 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFG-KLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSN 651 (970)
Q Consensus 573 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~ 651 (970)
+.++++++.++. +|..+. ..++.|++++|++++..+..|. .+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666553 333222 2355555555555555444454 555555555555555555555555555555555555
Q ss_pred CcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccc---ccccccceeccCCCcccc
Q 036729 652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI---GNLTALNVLNLQRNSLSG 728 (970)
Q Consensus 652 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l---~~l~~L~~L~L~~N~l~~ 728 (970)
|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..+ ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 55554444455555555555555555555555555555555555555555554332223 334555555555555554
Q ss_pred ccchhhhcccC--CcEEECcccccc
Q 036729 729 NIPSTIQQCKK--LYELRLSENFFT 751 (970)
Q Consensus 729 ~~p~~~~~l~~--L~~L~Ls~N~l~ 751 (970)
..+..+..++. ++.|+|++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444444443 244555555544
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=3e-18 Score=205.99 Aligned_cols=192 Identities=22% Similarity=0.180 Sum_probs=116.0
Q ss_pred EccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCc
Q 036729 624 DLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLS 703 (970)
Q Consensus 624 ~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 703 (970)
+++.|.+. ..+..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 34444444 45666777888888888888877 55666667888888888888888 67777888888888888888888
Q ss_pred ccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccc
Q 036729 704 GKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSL 783 (970)
Q Consensus 704 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~ 783 (970)
.+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+......++|++|.++|.+|..
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~- 360 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE- 360 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence 66888888888888888888886 667778888889999999999988888888776444334789999999888864
Q ss_pred cCCCCCCEEeCCCC--------cCccccCcccCCCCcCcEEecCCCccccc
Q 036729 784 GSLLKLERLNISYN--------QLQGQVPASLGKLTSLHVLNLSNNHLQGQ 826 (970)
Q Consensus 784 ~~l~~L~~L~ls~N--------~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 826 (970)
|+.|++++| .+.+..+..+..+..+....+++|-+.+.
T Consensus 361 -----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 361 -----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp ----------------------------------------------CCCGG
T ss_pred -----cceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence 455666666 45555555666777788888888887643
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=3.4e-19 Score=214.27 Aligned_cols=218 Identities=21% Similarity=0.188 Sum_probs=100.5
Q ss_pred ChHHHHHHHHHHhhCCC-CCCCCCCCC-CCCCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCC
Q 036729 23 ISTDSFWLLRIKQELVD-PTGILENWS-ARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSN 100 (970)
Q Consensus 23 ~~~~~~~l~~~~~~~~~-~~~~~~~w~-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n 100 (970)
...++++|+++...... ....-..|. ..+..+.|.++.++ .++++.|+|.++.+... +..+ |+.++|+.|
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~ 201 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEA-NQAL-----LQHKKLSQY 201 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCcc-hhhH-----hhcCccCcc
Confidence 35677889998776533 112233563 34556789998886 47899999998888763 3322 344444444
Q ss_pred CCCC---------CCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccc
Q 036729 101 SLTG---------LIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAY 171 (970)
Q Consensus 101 ~~~~---------~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~ 171 (970)
.+.+ ..|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++
T Consensus 202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred cccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence 4332 33556667777777777777776 66666666777777777777666 6666667777777777777
Q ss_pred cccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCC-CcEEEccCCcCcccc
Q 036729 172 CQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKS-LQILNLANNSLSGSI 250 (970)
Q Consensus 172 ~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~ 250 (970)
|.++ .+|..++++++|++|+|++|.++ .+|..|.++++|++|++++|.+++.+|..+..+.. +..|+|++|.+++.+
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 7766 55666677777777777777665 33555666666666666666666666655543321 223556666666555
Q ss_pred Cc
Q 036729 251 PV 252 (970)
Q Consensus 251 ~~ 252 (970)
|.
T Consensus 358 p~ 359 (727)
T 4b8c_D 358 PH 359 (727)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=5.5e-20 Score=214.02 Aligned_cols=181 Identities=18% Similarity=0.195 Sum_probs=96.7
Q ss_pred cCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCcc-------------CCccCCccccCCcccchhh-cccccccc
Q 036729 111 GQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNL-------------LWGEIPPHIGNLTELRELA-IAYCQLNG 176 (970)
Q Consensus 111 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~-------------~~~~~p~~l~~l~~L~~L~-L~~~~~~~ 176 (970)
..+++|+.|+|++|.+. .+|.+++.+++|+.|++++|. ..+..|..++++++|++|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34555555555555554 455555555555555554443 4455666677777777776 45443220
Q ss_pred CCCc------cccC--CceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCcc
Q 036729 177 SIPV------EIGN--LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG 248 (970)
Q Consensus 177 ~~p~------~l~~--l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 248 (970)
++. .+.. ...|++|++++|++++. |. +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 000 0000 01356666666666653 33 555555666666555555 455555555555555555555554
Q ss_pred ccCccccCCCCCCEEEccCccccccC-CccccCCCCccEEECcCCcCcccc
Q 036729 249 SIPVELSHLFNLRYLNLLGNIFDGEI-PSELNKLAQLEELDLSKNNLSGSI 298 (970)
Q Consensus 249 ~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~ 298 (970)
+| .++.+++|++|++++|.+++.. |..++.+++|++|++++|.+++.+
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 33 4555555555555555555544 555555555555555555555443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=4.5e-20 Score=214.78 Aligned_cols=203 Identities=21% Similarity=0.170 Sum_probs=105.3
Q ss_pred ccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCc-------------CccCCcccCcCcCcccEEE-ccCCcccC
Q 036729 591 AMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS-------------FTGQIAPQLSKCAKLAHLL-LSNNELTG 656 (970)
Q Consensus 591 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~l~~~~~L~~L~-L~~n~l~~ 656 (970)
..++.|+.|++++|+++ .+|..++.+++|+.|++++|. ..+.+|..+..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 34566777777777775 567777777777777776553 2233333334444444443 232221
Q ss_pred CccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhc
Q 036729 657 TIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQ 736 (970)
Q Consensus 657 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 736 (970)
..|+.+.+++|.+....+ ..|+.|++++|.+++ +|. ++.+++|+.|+|++|+++ .+|..+..
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 122223333333332211 135555565555554 333 555555555555555555 44555555
Q ss_pred ccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccC-CccccCCCCCCEEeCCCCcCccccCcc---cCCCCc
Q 036729 737 CKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI-PPSLGSLLKLERLNISYNQLQGQVPAS---LGKLTS 812 (970)
Q Consensus 737 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~i-p~~~~~l~~L~~L~ls~N~l~~~~p~~---l~~l~~ 812 (970)
+++|+.|+|++|++++ +| .++.++.|+. |+|++|.+++.+ |..++.+++|+.|+|++|++++..|.. +..+++
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~-L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCE-EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcE-EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 5555555555555554 44 5555555555 555555555554 555555555555555555555544321 122455
Q ss_pred CcEEe
Q 036729 813 LHVLN 817 (970)
Q Consensus 813 L~~l~ 817 (970)
|++||
T Consensus 562 L~~L~ 566 (567)
T 1dce_A 562 VSSIL 566 (567)
T ss_dssp CSEEE
T ss_pred cCccC
Confidence 55554
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=5.2e-17 Score=162.61 Aligned_cols=155 Identities=21% Similarity=0.320 Sum_probs=87.6
Q ss_pred cCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccce
Q 036729 639 SKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNV 718 (970)
Q Consensus 639 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 718 (970)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44566666666666666 333 45666666666666664432 224555666666666666665555555555555666
Q ss_pred eccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCc
Q 036729 719 LNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQ 798 (970)
Q Consensus 719 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~ 798 (970)
|++++|++++..|..+..+++|+.|++++|+ +.+.+| .++.+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-------------------------~i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNG-------------------------AITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCT-------------------------BCCCCG-GGGGCSSCCEEECTTBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCC-------------------------CccccH-hhcCCCCCCEEECCCCC
Confidence 6655555555555555555555555555554 222333 45566666666666666
Q ss_pred CccccCcccCCCCcCcEEecCCCcccc
Q 036729 799 LQGQVPASLGKLTSLHVLNLSNNHLQG 825 (970)
Q Consensus 799 l~~~~p~~l~~l~~L~~l~ls~N~l~g 825 (970)
+++ +| .+..+++|++|++++|++.+
T Consensus 171 i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 171 VHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 665 22 56666667777777766543
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=4.7e-17 Score=161.97 Aligned_cols=113 Identities=27% Similarity=0.301 Sum_probs=77.4
Q ss_pred ccceeccCCCccccccch-hhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEe
Q 036729 715 ALNVLNLQRNSLSGNIPS-TIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLN 793 (970)
Q Consensus 715 ~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ 793 (970)
++++|++++|++++..+. .|..+++|+.|+|++|++++..|..+..++.|+. |+|++|.+++..|..|+++++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE-LQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE-EECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE-EECCCCcCCccCHHHhcCCCCCCEEE
Confidence 445555555555444432 3555555666666666666555666666666665 66666666666667777788888888
Q ss_pred CCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 794 ISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 794 ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
|++|++++.+|..+..+++|++|++++|+++|.++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88888888888888888888888888888888877
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=7.4e-17 Score=160.54 Aligned_cols=175 Identities=22% Similarity=0.284 Sum_probs=114.2
Q ss_pred ceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCc-ccccccccceeccCCCccccccchhhhcccCCcEEECcc
Q 036729 669 GELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPP-EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSE 747 (970)
Q Consensus 669 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 747 (970)
+.+++++|.+. .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|++++..|..|..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34555555553 3343332 2566666666666655543 366666777777777777766666777777777777777
Q ss_pred ccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccC
Q 036729 748 NFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQL 827 (970)
Q Consensus 748 N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~ 827 (970)
|++++..|..+..++.|+. |+|++|.+++.+|..++.+++|++|++++|.+++..+-.. -...++...+..+...|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKT-LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCE-EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCE-EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCC
Confidence 7777766666777777777 7788888888888888888888899999998887655211 0112333355566777777
Q ss_pred CccccCCCCcccCCCCCCCCC
Q 036729 828 PLTFSGFPLSSFLGNAKLCGP 848 (970)
Q Consensus 828 p~~~~~~~~~~~~~n~~lc~~ 848 (970)
|..+.+.....+..+...|..
T Consensus 166 P~~l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 166 PSKVRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp STTTTTSBGGGSCTTTCCCCC
T ss_pred ChHHcCCChhhCcHhhcCcCC
Confidence 877766665555556555653
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.1e-16 Score=160.31 Aligned_cols=135 Identities=14% Similarity=0.206 Sum_probs=117.9
Q ss_pred ccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcc
Q 036729 613 EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL 692 (970)
Q Consensus 613 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 692 (970)
....+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..++.+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 4477889999999999999 455 68999999999999997754 3478899999999999999998888899999999
Q ss_pred eEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccc
Q 036729 693 LKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG 752 (970)
Q Consensus 693 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 752 (970)
++|++++|.+++..|..+..+++|++|++++|++.+.+| .+..+++|+.|++++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 999999999998888899999999999999998444555 68888888888888887763
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=4.6e-17 Score=170.81 Aligned_cols=170 Identities=23% Similarity=0.309 Sum_probs=97.1
Q ss_pred CCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEE
Q 036729 617 LTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696 (970)
Q Consensus 617 l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 696 (970)
+.++..+++++|.+++.. .+..+++|++|++++|.++.. | .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 444555566666665432 355566666666666665532 3 45555666666666666654433 55555555566
Q ss_pred ccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCccc
Q 036729 697 LRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS 776 (970)
Q Consensus 697 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~ 776 (970)
+++|++++. |. +.. ++|++|++++|++++. | .+..++.|+. |++++|.++
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-------------------------~-~l~~l~~L~~-L~Ls~N~i~ 141 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-------------------------D-SLIHLKNLEI-LSIRNNKLK 141 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-------------------------G-GGTTCTTCCE-EECTTSCCC
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-------------------------h-hhcCcccccE-EECCCCcCC
Confidence 555555542 11 111 4444455554444432 2 3444555554 555555555
Q ss_pred ccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccccc
Q 036729 777 GEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQ 826 (970)
Q Consensus 777 g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~ 826 (970)
+. | .++.+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 142 ~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 142 SI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 43 2 466677777777777777766 5677777777788887777765
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=4.2e-17 Score=171.15 Aligned_cols=151 Identities=22% Similarity=0.269 Sum_probs=81.5
Q ss_pred cccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccc
Q 036729 590 LAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIG 669 (970)
Q Consensus 590 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 669 (970)
+..+++|+.|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCC
T ss_pred hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-Cccc
Confidence 4445555555555555542 23 45555555566665555554333 5555556666666655554322 112 5566
Q ss_pred eEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECcccc
Q 036729 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENF 749 (970)
Q Consensus 670 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 749 (970)
+|++++|++++. + .+..+++|++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|+
T Consensus 110 ~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 110 RLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred EEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 666666655543 2 355556666666666665543 2455556666666666666554 445556666666666666
Q ss_pred cccc
Q 036729 750 FTGS 753 (970)
Q Consensus 750 l~~~ 753 (970)
+++.
T Consensus 184 ~~~~ 187 (263)
T 1xeu_A 184 CVNE 187 (263)
T ss_dssp EECC
T ss_pred ccCC
Confidence 5543
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=7.9e-17 Score=175.68 Aligned_cols=219 Identities=14% Similarity=0.095 Sum_probs=107.6
Q ss_pred CCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCc----CccccccccCCCCCc
Q 036729 233 LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNN----LSGSISLLNTQLKNL 308 (970)
Q Consensus 233 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L 308 (970)
+++|+.|+|.. .++...+.+|.++++|+.++++.|.+....+.+|..+.++..+....+. ........|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666666 5554555556666666666666666665566666666666665554421 122223344455555
Q ss_pred c-EEEccCCcccCCCchhhhc---CCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccc
Q 036729 309 E-TLVLSDNAFTGSIPIKFCL---NNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDL 384 (970)
Q Consensus 309 ~-~L~L~~n~l~~~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 384 (970)
+ .+.+... +.++..++. ...+++.+.+.++-...........|++|+.+++++|+++...+.+|..+.+|+.+
T Consensus 179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 5 4444322 123332221 13344444444331110111111135666666666666554444455555555555
Q ss_pred cCCcccccCCCCcCCCCcCCCC-eeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEecccccc
Q 036729 385 LLNNNSFTGSFPPEIGNLSKLE-NLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHF 463 (970)
Q Consensus 385 ~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 463 (970)
++.+| ++...+.+|.+|++|+ .+++.+ .++..-+..|.+|++|+.+++++|.+
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-------------------------~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-------------------------SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-------------------------TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-------------------------cceEEchhhhhCCccCCEEEeCCCcc
Confidence 55544 3323333444444444 444444 33333344555555666666555555
Q ss_pred CCcccccccCCCCccEEe
Q 036729 464 SGSIPETMGKLKNLVILQ 481 (970)
Q Consensus 464 ~~~~~~~~~~l~~L~~L~ 481 (970)
+...+..|.++++|+.++
T Consensus 310 ~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 310 TTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEECTTTTCTTCCCCEEE
T ss_pred CccchhhhcCCcchhhhc
Confidence 555555566666665554
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=4.7e-16 Score=169.50 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=76.0
Q ss_pred CCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccc-eEEcccCcCcCCCCCCCCCCCcceEE
Q 036729 617 LTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIG-ELDLSSNNFNGTVPAEIGNCSKLLKL 695 (970)
Q Consensus 617 l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L 695 (970)
+++|+++++++|+++.+.+.+|.+|++|+.+++.+| ++...+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 677777777777777666667777777777777776 6655566777777777 777777 6666666778888888888
Q ss_pred EccCCcCcccCCcccccccccceec
Q 036729 696 SLRGNNLSGKIPPEIGNLTALNVLN 720 (970)
Q Consensus 696 ~L~~N~l~~~~~~~l~~l~~L~~L~ 720 (970)
++++|+++...+..|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 8888877777667777777777765
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=3.5e-15 Score=145.09 Aligned_cols=132 Identities=22% Similarity=0.177 Sum_probs=68.5
Q ss_pred CCCcEEEccCCcCc-cCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEE
Q 036729 618 TELNFLDLSFNSFT-GQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696 (970)
Q Consensus 618 ~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 696 (970)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 44444455555555555555555443 3444555555555555555544444444455555555
Q ss_pred ccCCcCcccC-CcccccccccceeccCCCccccccc---hhhhcccCCcEEECcccccc
Q 036729 697 LRGNNLSGKI-PPEIGNLTALNVLNLQRNSLSGNIP---STIQQCKKLYELRLSENFFT 751 (970)
Q Consensus 697 L~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~ 751 (970)
+++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555554431 1345555555555555555554443 34555555666666555554
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=6.8e-15 Score=146.18 Aligned_cols=112 Identities=22% Similarity=0.270 Sum_probs=86.5
Q ss_pred ccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeC
Q 036729 715 ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNI 794 (970)
Q Consensus 715 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~l 794 (970)
+|++|++++|+++ .+|..|..+++|+.|+|++|.+++..|..|..++.|+. |+|++|.+++..|..|.++++|+.|+|
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~-L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT-LILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE-EECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 4556666666655 34456666666666666666666666666667777776 777777777777778899999999999
Q ss_pred CCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 795 SYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 795 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
++|++++..+..|..+++|+.|++++|++.|.++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 9999998777789999999999999999999887
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=3.8e-15 Score=141.63 Aligned_cols=85 Identities=26% Similarity=0.348 Sum_probs=46.3
Q ss_pred CccceEEcccCcCc-CCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEE
Q 036729 666 QEIGELDLSSNNFN-GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELR 744 (970)
Q Consensus 666 ~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 744 (970)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 44455555555555555555555543 4455555555555555555555555555555555555
Q ss_pred Cccccccc
Q 036729 745 LSENFFTG 752 (970)
Q Consensus 745 Ls~N~l~~ 752 (970)
+++|++++
T Consensus 95 ls~N~i~~ 102 (149)
T 2je0_A 95 LSGNKIKD 102 (149)
T ss_dssp CTTSCCCS
T ss_pred CCCCcCCC
Confidence 55555553
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=2.4e-15 Score=143.04 Aligned_cols=130 Identities=21% Similarity=0.234 Sum_probs=118.1
Q ss_pred CCCcceEEEccCCcCc-ccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHh
Q 036729 688 NCSKLLKLSLRGNNLS-GKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQV 766 (970)
Q Consensus 688 ~l~~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 766 (970)
..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..++.|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999999998 78888889999999999999999877 77899999999999999999889998889999998
Q ss_pred hhhCCCCccccc-CCccccCCCCCCEEeCCCCcCccccC---cccCCCCcCcEEecCC
Q 036729 767 ILDLSKNNFSGE-IPPSLGSLLKLERLNISYNQLQGQVP---ASLGKLTSLHVLNLSN 820 (970)
Q Consensus 767 ~L~ls~N~l~g~-ip~~~~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~~l~ls~ 820 (970)
|++++|.+++. .|..++.+++|++|++++|++++..+ ..+..+++|++||+++
T Consensus 93 -L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 -LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999974 45889999999999999999998776 5788999999999874
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=6.7e-15 Score=143.11 Aligned_cols=133 Identities=21% Similarity=0.225 Sum_probs=97.0
Q ss_pred cCCCceeccCcccc-CCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEE
Q 036729 594 RNLSRLRLAHNHLT-GNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD 672 (970)
Q Consensus 594 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 672 (970)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666666 56666667777777777777777765 5677777778888888777776777777778888888
Q ss_pred cccCcCcCCC-CCCCCCCCcceEEEccCCcCcccCC---cccccccccceeccCCCcccc
Q 036729 673 LSSNNFNGTV-PAEIGNCSKLLKLSLRGNNLSGKIP---PEIGNLTALNVLNLQRNSLSG 728 (970)
Q Consensus 673 Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~L~~N~l~~ 728 (970)
+++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888777642 2567778888888888888876554 467778888888888887653
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=1.1e-14 Score=142.83 Aligned_cols=114 Identities=25% Similarity=0.299 Sum_probs=82.7
Q ss_pred cccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEe
Q 036729 714 TALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLN 793 (970)
Q Consensus 714 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ 793 (970)
++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..++.|+. |++++|.+++..+..++.+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI-LYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE-EECCCCCccccCHHHhhCCcccCEEE
Confidence 34555555555555555555555666666666666666544455566666666 77777777766666778889999999
Q ss_pred CCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 794 ISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 794 ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+++|++++..+..+..+++|++|++++|++.|.+|
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999987777777889999999999999999887
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=4.5e-14 Score=140.24 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=96.9
Q ss_pred cEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCC
Q 036729 621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN 700 (970)
Q Consensus 621 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 700 (970)
+.+++++|.++. +|..+. ++|++|++++|.++ .+|..|..+++|++|++++|++++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456666666663 444332 46777777777776 45667777788888888888888777777888888888888888
Q ss_pred cCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECcccccccc
Q 036729 701 NLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGS 753 (970)
Q Consensus 701 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 753 (970)
.+++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 88877777788888888888888888877777788888888888888888753
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=1.7e-13 Score=152.13 Aligned_cols=265 Identities=11% Similarity=0.141 Sum_probs=152.5
Q ss_pred CCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEE
Q 036729 450 CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLIT 529 (970)
Q Consensus 450 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 529 (970)
+..++.+.+.+ .++.+....|.++ +|+.+.+..+ ++.+-..+|.++ +|+.+.+.+ .+....+.+|.++.+|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 35555555543 2333334445543 4666665544 443334444443 355555543 33333444444444444444
Q ss_pred ccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCC
Q 036729 530 LYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN 609 (970)
Q Consensus 530 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 609 (970)
+..|.++......|. ..+|+.+.+.++ ++.....+|..|++|+.+++..+ ++..
T Consensus 187 l~~n~l~~I~~~aF~------------------------~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I 240 (401)
T 4fdw_A 187 LSKTKITKLPASTFV------------------------YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI 240 (401)
T ss_dssp CTTSCCSEECTTTTT------------------------TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE
T ss_pred cCCCcceEechhhEe------------------------ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc
Confidence 444444333222222 345555555532 44445556666777777777654 3433
Q ss_pred CCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCccc-----CCccccccccCccceEEcccCcCcCCCCC
Q 036729 610 IPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELT-----GTIPFWLGSLQEIGELDLSSNNFNGTVPA 684 (970)
Q Consensus 610 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 684 (970)
-..+|.+ .+|+.+++. +.++.+...+|.+|++|+.+++.+|.+. ...+..|.+|++|+.+++. +.+..+-..
T Consensus 241 ~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~ 317 (401)
T 4fdw_A 241 GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQG 317 (401)
T ss_dssp CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTT
T ss_pred ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhh
Confidence 4445555 567777774 4455555667777777777777776654 2345567777777777777 346655566
Q ss_pred CCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhccc-CCcEEECccccc
Q 036729 685 EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCK-KLYELRLSENFF 750 (970)
Q Consensus 685 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l 750 (970)
+|.+|++|+.++|..| ++...+..|.++ +|+.+++++|.+....+..|.+++ .++.|++..+.+
T Consensus 318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 7777777777777544 555555667777 777777777777666666666663 567777766543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=4.8e-14 Score=138.33 Aligned_cols=132 Identities=21% Similarity=0.219 Sum_probs=91.3
Q ss_pred cEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCC
Q 036729 621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN 700 (970)
Q Consensus 621 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 700 (970)
+.+++++|.++. +|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456666666553 23222 246677777777766665556666777777777777777666666677777777777777
Q ss_pred cCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCc
Q 036729 701 NLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP 755 (970)
Q Consensus 701 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip 755 (970)
.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7776666667777778888888887776666667777888888888888876554
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=1.4e-13 Score=154.07 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=61.0
Q ss_pred ccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCcc
Q 036729 589 ELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEI 668 (970)
Q Consensus 589 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 668 (970)
.|..+..++.+....+.+. ...|..+.+|+.+.+..+ ++.+...+|.+|++|+.++|.++ ++.....+|.+|++|
T Consensus 271 ~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred ccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 3444444444444433221 124455555555555433 34344445556666666666432 433334556666666
Q ss_pred ceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccce
Q 036729 669 GELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNV 718 (970)
Q Consensus 669 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 718 (970)
+.+++..+ +..+-..+|.+|++|+.+++..+ +. .+...|.++++|+.
T Consensus 346 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 346 SNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 66666544 44444455666666666666543 11 12234555555554
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=2.9e-13 Score=150.41 Aligned_cols=245 Identities=12% Similarity=0.135 Sum_probs=116.6
Q ss_pred CCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEcc
Q 036729 452 GLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLY 531 (970)
Q Consensus 452 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 531 (970)
+|+.+.+..+ ++.+....|.++ +|+.+.+.. .+..+-+.+|.+|++|+.+++.+|.++......|. ...|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 3444444333 333333334442 355555543 33333444555555555555555555544444444 3555555554
Q ss_pred ccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCC
Q 036729 532 NNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP 611 (970)
Q Consensus 532 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 611 (970)
.+ +.......|.+|++|+.+++..+--.-....|.+ .+|+.+++. +.++.....+|..|++|+.+++.+|.+..
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~--- 285 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND--- 285 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC---
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC---
Confidence 22 4444445555556666665554311101112222 344444442 22332333344444444444444433220
Q ss_pred cccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCc
Q 036729 612 SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSK 691 (970)
Q Consensus 612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 691 (970)
+....+.+.+|.+|++|+.+.+. +.++.....+|.+|++|+.++|..| ++.+-+.+|.+| +
T Consensus 286 ----------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 286 ----------------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G 346 (401)
T ss_dssp ----------------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred ----------------CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence 00012334455556666666665 2344444455666666666666433 444445566666 6
Q ss_pred ceEEEccCCcCcccCCccccccc-ccceeccCCCc
Q 036729 692 LLKLSLRGNNLSGKIPPEIGNLT-ALNVLNLQRNS 725 (970)
Q Consensus 692 L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~L~~N~ 725 (970)
|+.+++.+|.+....+..|.+++ .++.|.+..+.
T Consensus 347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 66666666666555555555553 56666666554
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=3.3e-13 Score=150.90 Aligned_cols=237 Identities=12% Similarity=0.104 Sum_probs=104.9
Q ss_pred cccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCc
Q 036729 542 SLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELN 621 (970)
Q Consensus 542 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 621 (970)
.|.+|.+|+.+.+..+..+-....|.++.+|+.+++..+ ++.....+|..+..|+.+.+..+... +.+.+....+|+
T Consensus 157 aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~ 233 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVK 233 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCC
T ss_pred hhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCc
Confidence 444555555555544332212224444455555555443 22233444555555555555443221 112223334555
Q ss_pred EEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCc
Q 036729 622 FLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN 701 (970)
Q Consensus 622 ~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 701 (970)
.+.+... ++......+.+|..++.+.+..+... .....|..+..++.+....+.+ ....|..+.+|+.+.+.++
T Consensus 234 ~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 234 NIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp EEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-
T ss_pred eEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-
Confidence 5555422 22223334555555555555444221 2233444445555444443321 1223444555555554432
Q ss_pred CcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCc
Q 036729 702 LSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP 781 (970)
Q Consensus 702 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~ 781 (970)
+.......|.++++|+.+++.++ ++.....+|.+|++|+.+ ++..| ++..-..
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i-------------------------~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI-------------------------NFPLS-LRKIGAN 360 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE-------------------------CCCTT-CCEECTT
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE-------------------------EECcc-ccEehHH
Confidence 33222334444444444444322 333333344444444444 44333 3333345
Q ss_pred cccCCCCCCEEeCCCCcCccccCcccCCCCcCcEE
Q 036729 782 SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVL 816 (970)
Q Consensus 782 ~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l 816 (970)
+|.++.+|+.+++..+ ++ .+...|.++++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 6667777777777554 21 234456666666543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=5.2e-16 Score=155.48 Aligned_cols=151 Identities=23% Similarity=0.336 Sum_probs=88.5
Q ss_pred CccceEEcccCcCcCCCCC------CCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccC
Q 036729 666 QEIGELDLSSNNFNGTVPA------EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK 739 (970)
Q Consensus 666 ~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 739 (970)
..++.++++.+.+.|.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444444443 44455555555555555554 33 4555555555555555555 34445555566
Q ss_pred CcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCC-ccccCCCCCCEEeCCCCcCccccCcc----------cC
Q 036729 740 LYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIP-PSLGSLLKLERLNISYNQLQGQVPAS----------LG 808 (970)
Q Consensus 740 L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip-~~~~~l~~L~~L~ls~N~l~~~~p~~----------l~ 808 (970)
|+.|++++|++++ +| .+..++.|+. |++++|.+++..+ ..+..+++|++|++++|.+++.+|.. +.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~-L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRV-LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSE-EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCE-EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 6666666666664 33 4566666665 6666666664322 35677788888888888887776653 67
Q ss_pred CCCcCcEEecCCCccc
Q 036729 809 KLTSLHVLNLSNNHLQ 824 (970)
Q Consensus 809 ~l~~L~~l~ls~N~l~ 824 (970)
.+++|++|| +|+++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 777888776 55554
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=2.1e-15 Score=151.09 Aligned_cols=136 Identities=23% Similarity=0.231 Sum_probs=80.7
Q ss_pred ccCcCCCceeccCccccCCCCc------ccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccc
Q 036729 591 AMSRNLSRLRLAHNHLTGNIPS------EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGS 664 (970)
Q Consensus 591 ~~~~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~ 664 (970)
.....++.++++.+.++|..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3445566666777766666655 66667777777777777665 44 5666666677777666666 34555555
Q ss_pred cCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC-cccccccccceeccCCCccccccc
Q 036729 665 LQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP-PEIGNLTALNVLNLQRNSLSGNIP 731 (970)
Q Consensus 665 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p 731 (970)
+++|++|++++|++++. | .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+.+|
T Consensus 92 ~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 92 ADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 56666666666666642 2 34555556666666655553221 234555555555555555554443
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2.3e-13 Score=133.16 Aligned_cols=82 Identities=22% Similarity=0.173 Sum_probs=32.8
Q ss_pred ccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccch--hhhcccCCcEEE
Q 036729 667 EIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS--TIQQCKKLYELR 744 (970)
Q Consensus 667 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~ 744 (970)
+|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++. +|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence 344444444444332 233444444444444444443322223444444444444444422 222 334444444444
Q ss_pred Ccccccc
Q 036729 745 LSENFFT 751 (970)
Q Consensus 745 Ls~N~l~ 751 (970)
+++|+++
T Consensus 120 l~~N~i~ 126 (176)
T 1a9n_A 120 ILRNPVT 126 (176)
T ss_dssp CCSSGGG
T ss_pred ecCCCCC
Confidence 4444443
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=1.9e-13 Score=133.73 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=79.8
Q ss_pred cccCCCCcEEEccCCcCccCCcccCcCcC-cccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcc
Q 036729 614 FGKLTELNFLDLSFNSFTGQIAPQLSKCA-KLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL 692 (970)
Q Consensus 614 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 692 (970)
+.++.+|++|++++|.++.. +. +..+. +|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 44455566666666655532 32 33333 566666666666543 345566666666666666665444444666667
Q ss_pred eEEEccCCcCcccCCc--ccccccccceeccCCCccccccch---hhhcccCCcEEECcccccc
Q 036729 693 LKLSLRGNNLSGKIPP--EIGNLTALNVLNLQRNSLSGNIPS---TIQQCKKLYELRLSENFFT 751 (970)
Q Consensus 693 ~~L~L~~N~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~ 751 (970)
++|++++|.++. +|. .+..+++|++|++++|.++...+. .+..+++|+.||+++|...
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777776643 333 566677777777777777643222 3677777888887777655
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=6.2e-13 Score=128.99 Aligned_cols=109 Identities=27% Similarity=0.292 Sum_probs=81.9
Q ss_pred cceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCC
Q 036729 716 LNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNIS 795 (970)
Q Consensus 716 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls 795 (970)
.+.+++++|.++. +|..+ .+.|+.|+|++|++++..|..|..++.|+. |+|++|.+++..|..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~-L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTR-LDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSE-EECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCE-EECCCCCcCccChhhccCCCCCCEEECC
Confidence 3455555555543 33333 255666777777777666666777777776 7777777776666778889999999999
Q ss_pred CCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 796 YNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 796 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+|+|++..|..+..+++|++|++++|+++|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998888889999999999999999999887
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=2.2e-12 Score=125.46 Aligned_cols=108 Identities=24% Similarity=0.308 Sum_probs=76.0
Q ss_pred ceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCC
Q 036729 717 NVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISY 796 (970)
Q Consensus 717 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~ 796 (970)
+.+++++|.++ .+|..+. +.|+.|+|++|++++..|..+..++.|+. |+|++|.+++..+..|+++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQ-LYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCE-EECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34555555553 2333332 45666666666666666666666666666 67777777765556678888999999999
Q ss_pred CcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 797 NQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 797 N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
|+|++..|..+..+++|++|++++|++.+.++
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99987777778889999999999999988876
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=5.3e-12 Score=122.38 Aligned_cols=108 Identities=21% Similarity=0.207 Sum_probs=67.3
Q ss_pred ccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCC
Q 036729 644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQR 723 (970)
Q Consensus 644 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 723 (970)
.+++++++|.++. +|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3455555555543 333322 5556666666666666566666666666666666666655555566666777777777
Q ss_pred CccccccchhhhcccCCcEEECccccccccC
Q 036729 724 NSLSGNIPSTIQQCKKLYELRLSENFFTGSI 754 (970)
Q Consensus 724 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i 754 (970)
|++++..+..|..+++|+.|+|++|++++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 7776666666777777777777777777543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.1e-11 Score=120.62 Aligned_cols=105 Identities=21% Similarity=0.226 Sum_probs=63.7
Q ss_pred cEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCC
Q 036729 645 AHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN 724 (970)
Q Consensus 645 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 724 (970)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34455555443 2333332 45556666666666555556666666666666666666554445566666777777777
Q ss_pred ccccccchhhhcccCCcEEECccccccc
Q 036729 725 SLSGNIPSTIQQCKKLYELRLSENFFTG 752 (970)
Q Consensus 725 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 752 (970)
++++..+..|..+++|+.|+|++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7666555556777777777777777764
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.29 E-value=1.6e-10 Score=129.12 Aligned_cols=106 Identities=14% Similarity=0.237 Sum_probs=44.3
Q ss_pred ccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcc
Q 036729 613 EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL 692 (970)
Q Consensus 613 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 692 (970)
.|.++++|+.+.+. +.++.+...+|.+|.+|+.+.|..+ ++.....+|.+|.+|+.+.+..+ ++.+-..+|.+|++|
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 34444445544443 2233333344555555555555432 33233344555555555555432 333333445555555
Q ss_pred eEEEccCCcCcccCCcccccccccceeccCCC
Q 036729 693 LKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN 724 (970)
Q Consensus 693 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 724 (970)
+.+++.++.... ..+...++|+.+.+..+
T Consensus 360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CEEEESSCHHHH---HTCBCCCCC--------
T ss_pred CEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 555555543221 23344445555554443
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.28 E-value=1.5e-10 Score=129.26 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=56.1
Q ss_pred CcCCCCcC-CCCeeecccccccccCCccccCCCCCCEEEccccc---CCCcCCcccccCCCCCEEeccccccCCcccccc
Q 036729 396 PPEIGNLS-KLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQ---MSGSIPRELTNCSGLTEIDFFGNHFSGSIPETM 471 (970)
Q Consensus 396 ~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 471 (970)
..+|.++. .|+.+.+.++ ++..-..+|.++++|+.+.+..+. ++..-..+|.+|.+|+.+.+..+ ++......|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34566653 4777777643 443444566666667766665542 33333445556666665555433 332333445
Q ss_pred cCCCCccEEeeccccCCCCCCCcccccccccEEecc
Q 036729 472 GKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALA 507 (970)
Q Consensus 472 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 507 (970)
..+.+|+.+.+..+ +.......|..|..|+.+.+.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred hhhcccccccccce-eeeecccceeccccccccccc
Confidence 55555555555432 222333345555555555554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=2.6e-11 Score=133.10 Aligned_cols=105 Identities=26% Similarity=0.319 Sum_probs=64.4
Q ss_pred ccCCC-ccccccchhhhcccCCcEEECcc-ccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCC
Q 036729 720 NLQRN-SLSGNIPSTIQQCKKLYELRLSE-NFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN 797 (970)
Q Consensus 720 ~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N 797 (970)
+.+++ .+++ +|. +..+++|+.|+|++ |++++..|..|+.++.|+. |+|++|.|++..|..|+++++|+.|||++|
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRN-LTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSE-EECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCE-EECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 44444 4442 333 45555555555553 5555555555555555655 666666666666666777777777777777
Q ss_pred cCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 798 QLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 798 ~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+|++..|..+..++ |+.|++++|++.|.++
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 77765555555555 7777777777777766
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=1.2e-12 Score=143.97 Aligned_cols=114 Identities=25% Similarity=0.268 Sum_probs=64.0
Q ss_pred cccceeccCCCccccccchhh-----hcccCCcEEECccccccc----cCchhhhhhhhhHhhhhCCCCcccc----cCC
Q 036729 714 TALNVLNLQRNSLSGNIPSTI-----QQCKKLYELRLSENFFTG----SIPADLGRLTELQVILDLSKNNFSG----EIP 780 (970)
Q Consensus 714 ~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~~L~ls~N~l~g----~ip 780 (970)
++|+.|+|++|.++......+ ...+.|++|+|++|.++. .++..+..++.|+. |||++|.++. .++
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~-L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH-LSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCE-EECTTSSCHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCE-EeCCCCCCCcHHHHHHH
Confidence 344455555554443322222 123445555555555543 12233344445554 5555555543 224
Q ss_pred ccccCCCCCCEEeCCCCcCccc----cCcccCCCCcCcEEecCCCcccccCC
Q 036729 781 PSLGSLLKLERLNISYNQLQGQ----VPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 781 ~~~~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
..+...++|+.|||++|.++.. ++..+...++|++||+++|+++....
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 4566677888888888888763 34445556788888888888876544
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=9.6e-13 Score=144.70 Aligned_cols=187 Identities=19% Similarity=0.195 Sum_probs=93.4
Q ss_pred CCCCcEEEccCCcCccCCcccCc-----CcCcccEEEccCCcccCCccccc-cccCccceEEcccCcCcCCCCCCC----
Q 036729 617 LTELNFLDLSFNSFTGQIAPQLS-----KCAKLAHLLLSNNELTGTIPFWL-GSLQEIGELDLSSNNFNGTVPAEI---- 686 (970)
Q Consensus 617 l~~L~~L~Ls~n~l~~~~~~~l~-----~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l---- 686 (970)
++.|++|++++|.++......+. .+.+|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45678888888887754333222 22577777777777654322222 234566666666666653221111
Q ss_pred -CCCCcceEEEccCCcCccc----CCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhh
Q 036729 687 -GNCSKLLKLSLRGNNLSGK----IPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRL 761 (970)
Q Consensus 687 -~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l 761 (970)
...++|++|+|++|.++.. ++..+...++|++|+|++|.++..... .++..+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--------------------~L~~~L~~~ 210 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--------------------LLAAQLDRN 210 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--------------------HHHHHGGGC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--------------------HHHHHHhcC
Confidence 1234555555555555431 112223344455555555554432100 112233333
Q ss_pred hhhHhhhhCCCCcccc----cCCccccCCCCCCEEeCCCCcCccccCcccCCC---C--cCcEEe--cCCCccc
Q 036729 762 TELQVILDLSKNNFSG----EIPPSLGSLLKLERLNISYNQLQGQVPASLGKL---T--SLHVLN--LSNNHLQ 824 (970)
Q Consensus 762 ~~L~~~L~ls~N~l~g----~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l---~--~L~~l~--ls~N~l~ 824 (970)
+.|+. |||++|.++. .++..+...++|++|||++|.|+......+..+ . .|+.+. +..|.++
T Consensus 211 ~~L~~-L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 211 RQLQE-LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp SCCCE-EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCcCe-EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 44444 4555554443 223345566789999999999887655544433 1 155555 4444443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=2.7e-10 Score=124.93 Aligned_cols=101 Identities=22% Similarity=0.235 Sum_probs=49.5
Q ss_pred EEccCC-cCccCCcccCcCcCcccEEEccC-CcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCC
Q 036729 623 LDLSFN-SFTGQIAPQLSKCAKLAHLLLSN-NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN 700 (970)
Q Consensus 623 L~Ls~n-~l~~~~~~~l~~~~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 700 (970)
++++++ .+++ +|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 5553 344 55555555555553 5555544455555555555555555555544444555555555555555
Q ss_pred cCcccCCcccccccccceeccCCCcc
Q 036729 701 NLSGKIPPEIGNLTALNVLNLQRNSL 726 (970)
Q Consensus 701 ~l~~~~~~~l~~l~~L~~L~L~~N~l 726 (970)
+|++..+..+..++ |+.|+|.+|.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 55443333333332 44444444443
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.03 E-value=1.3e-08 Score=112.90 Aligned_cols=301 Identities=11% Similarity=0.075 Sum_probs=134.9
Q ss_pred cccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccc
Q 036729 422 EIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRL 501 (970)
Q Consensus 422 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 501 (970)
++....+|+.+.+.. .++.+-..+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +...-..+|..+ +|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 455566778877754 344444567888888888888643 554555567665 5666666533 333333445444 67
Q ss_pred cEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCC
Q 036729 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNS 581 (970)
Q Consensus 502 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~ 581 (970)
+.+.+..+ +.......|.+. .++.+.+.. .++......+..+..++...+..+............ +
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~----------~- 181 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY----------N- 181 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE----------E-
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceec----------c-
Confidence 77777543 222333334333 344333322 222233344555555555555443321100000000 0
Q ss_pred CCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCcccc
Q 036729 582 FSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFW 661 (970)
Q Consensus 582 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~ 661 (970)
........+..+..+..+.+.... .......+..+..|+.+.+..+ +.......+.++..|+.+.+..+ ++.....+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a 258 (379)
T 4h09_A 182 KNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL 258 (379)
T ss_dssp TTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred cccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc
Confidence 000011112222233333322211 1112233444444555544432 22233334455555555555433 33233344
Q ss_pred ccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCc
Q 036729 662 LGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY 741 (970)
Q Consensus 662 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 741 (970)
|.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++......|.++++|+.+++..+ ++.....+|.+|++|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 444555555554332 33233334555555555555554444333444555555555555432 3333334455555555
Q ss_pred EEECc
Q 036729 742 ELRLS 746 (970)
Q Consensus 742 ~L~Ls 746 (970)
.+++.
T Consensus 337 ~i~ip 341 (379)
T 4h09_A 337 TISYP 341 (379)
T ss_dssp CCCCC
T ss_pred EEEEC
Confidence 54443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=2e-08 Score=111.49 Aligned_cols=318 Identities=10% Similarity=0.070 Sum_probs=154.3
Q ss_pred cccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCC
Q 036729 373 RSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSG 452 (970)
Q Consensus 373 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 452 (970)
.++....+|+.+.+.. .++.....+|.+|.+|+.+++.++ ++..-..+|..+ +|+.+.+..+ +...-...|.++ +
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 3455566777777754 344344556777888888877654 443334455554 4666555432 322223344443 5
Q ss_pred CCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccc
Q 036729 453 LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYN 532 (970)
Q Consensus 453 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 532 (970)
|+.+++..+ +.......|... +++.+.+..+ ++......+..+..++.+.+..+.........+..-
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~---------- 181 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYN---------- 181 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEE----------
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecc----------
Confidence 666666543 221222233332 3444443322 222333445555555555554433221110000000
Q ss_pred cccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCc
Q 036729 533 NSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPS 612 (970)
Q Consensus 533 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 612 (970)
........+..+..+..+.+....-. .....+..+.+|+.+.+..+ +......
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------i~~~~f~~~~~l~~i~~~~~-~~~i~~~ 234 (379)
T 4h09_A 182 --KNKTILESYPAAKTGTEFTIPSTVKT------------------------VTAYGFSYGKNLKKITITSG-VTTLGDG 234 (379)
T ss_dssp --TTSSEEEECCTTCCCSEEECCTTCCE------------------------ECTTTTTTCSSCSEEECCTT-CCEECTT
T ss_pred --cccceeccccccccccccccccceeE------------------------Eeecccccccccceeeeccc-eeEEccc
Confidence 00000111222223333332222111 12223334444554444332 2222234
Q ss_pred ccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcc
Q 036729 613 EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL 692 (970)
Q Consensus 613 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 692 (970)
.|.++..|+.+.+..+ ++.+-..+|.+|.+|+.+.+..+ +.......|.++++|+.+++.++.+..+-..+|.+|++|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 4555666666666544 44444455666666666666533 333334456666777777776666665555667777777
Q ss_pred eEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccC
Q 036729 693 LKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK 739 (970)
Q Consensus 693 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 739 (970)
+.+.|..+ ++.+-..+|.++++|+.+.+..+ ++.....+|.++..
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 77777543 44444456777777777777654 44444556666543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=6.3e-10 Score=120.98 Aligned_cols=205 Identities=15% Similarity=0.183 Sum_probs=113.2
Q ss_pred CCCEEEEECCCCCCcc-c-------cccCccCCCCCcEEECCCCCCC---------CCCCccccCCCCCcEeecCCCcCc
Q 036729 65 QKHVVGLNLSSSGLSG-S-------ISRDFLNLTSLETLDLSSNSLT---------GLIPSELGQLQNLRILLLYSNSFS 127 (970)
Q Consensus 65 ~~~v~~L~L~~~~l~~-~-------~~~~l~~l~~L~~L~Ls~n~~~---------~~~p~~l~~l~~L~~L~Ls~n~~~ 127 (970)
..+|+.|.+......| . +..++..+++|+.|.+...... +.+...+..+++|+.|+|+++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4568888877665543 2 2344567788888888654331 234455667778888888766311
Q ss_pred CCCCcCCCCCCCCcEEEccCccCCccCCcccc--CCcccchhhcccc--ccccCCCccccCCceeeEEEcCCCcCCCCCc
Q 036729 128 GKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIG--NLTELRELAIAYC--QLNGSIPVEIGNLKHLTSLDLQMNKLSGLIP 203 (970)
Q Consensus 128 ~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~--~l~~L~~L~L~~~--~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~ 203 (970)
.++. +. +++|++|++..|.+.......++ .+++|++|+|+.+ ...+.. .+... .
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~------------------~~~~l-~ 243 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG------------------DMNVF-R 243 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS------------------CGGGT-G
T ss_pred -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch------------------hHHHH-H
Confidence 2333 32 66777777766655433323332 3455555554321 100000 00000 0
Q ss_pred ccc--cCCcccccccccccccCCCCccccc---CCCCCcEEEccCCcCccc----cCccccCCCCCCEEEccCccccccC
Q 036729 204 EAI--HGCEELQKFAASNNMLEGTIPSSIV---LLKSLQILNLANNSLSGS----IPVELSHLFNLRYLNLLGNIFDGEI 274 (970)
Q Consensus 204 ~~l--~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~ 274 (970)
..+ ..+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 111 2356666666666665543332332 467888888888887754 2333456788888888888877654
Q ss_pred CccccC-CCCccEEECcCCc
Q 036729 275 PSELNK-LAQLEELDLSKNN 293 (970)
Q Consensus 275 ~~~l~~-l~~L~~L~L~~n~ 293 (970)
...+.. + ...++++.+.
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 444443 2 3557887775
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=4.8e-09 Score=114.02 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=70.0
Q ss_pred ccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccc--cccccceeccCC--Cccccc-----c
Q 036729 660 FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIG--NLTALNVLNLQR--NSLSGN-----I 730 (970)
Q Consensus 660 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~L~~--N~l~~~-----~ 730 (970)
..+..+|+|+.|+|++|.-. .++. +. +++|+.|++..+.+.......+. .+++|+.|+|+. |...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34455666777777665211 1222 22 66777777776665533222332 466777776642 221111 0
Q ss_pred chhh--hcccCCcEEECccccccccCchhhh---hhhhhHhhhhCCCCccccc----CCccccCCCCCCEEeCCCCcCcc
Q 036729 731 PSTI--QQCKKLYELRLSENFFTGSIPADLG---RLTELQVILDLSKNNFSGE----IPPSLGSLLKLERLNISYNQLQG 801 (970)
Q Consensus 731 p~~~--~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~~L~ls~N~l~g~----ip~~~~~l~~L~~L~ls~N~l~~ 801 (970)
...+ ..+++|+.|+|++|.++...+..+. .++.|+. |||+.|.+++. ++..+..+++|+.|+|++|.++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~-LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET-MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSE-EECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCE-EECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 1111 2467788888887777644333332 2444554 55555555432 22233345556666666665554
Q ss_pred c
Q 036729 802 Q 802 (970)
Q Consensus 802 ~ 802 (970)
.
T Consensus 322 ~ 322 (362)
T 2ra8_A 322 E 322 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=3.5e-10 Score=116.21 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=16.4
Q ss_pred CCCccceEecCCCCCEEEEECCC
Q 036729 53 MCSWHGVTCSDDQKHVVGLNLSS 75 (970)
Q Consensus 53 ~c~w~gv~c~~~~~~v~~L~L~~ 75 (970)
.|+|.|+.|+....+|+.+-..+
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~~ 99 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINSS 99 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEEC
T ss_pred HHhcCcEEECCCCCEEEEEEecC
Confidence 58999999986555665554443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=2.1e-08 Score=98.18 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=40.3
Q ss_pred cccCccCCCCCcEEECCCC-CCCCC----CCccccCCCCCcEeecCCCcCcCC----CCcCCCCCCCCcEEEccCccCCc
Q 036729 82 ISRDFLNLTSLETLDLSSN-SLTGL----IPSELGQLQNLRILLLYSNSFSGK----IPPEIGFLNKLQVLRIGDNLLWG 152 (970)
Q Consensus 82 ~~~~l~~l~~L~~L~Ls~n-~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~n~~~~ 152 (970)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...+.|++|+|++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3344556677777777777 66532 334455566677777777766532 22223334556666666665543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=1.7e-07 Score=96.17 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=45.2
Q ss_pred hcccCCcEEECccccccc--cCchhhhhhhhhHhhhhCCCCcccccCCccccCCC--CCCEEeCCCCcCccccCc-----
Q 036729 735 QQCKKLYELRLSENFFTG--SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL--KLERLNISYNQLQGQVPA----- 805 (970)
Q Consensus 735 ~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~--~L~~L~ls~N~l~~~~p~----- 805 (970)
.+++.|+.|+|++|++++ .+|..+..++.|+. |+|++|.+++. ..+..+. +|++|+|++|.+++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~-L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI-LNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCE-EECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCE-EECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 445666666666666665 34455555555555 66666665543 2233333 666677777766665552
Q ss_pred --ccCCCCcCcEEe
Q 036729 806 --SLGKLTSLHVLN 817 (970)
Q Consensus 806 --~l~~l~~L~~l~ 817 (970)
.+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 244556666655
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=3.1e-07 Score=89.83 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=67.2
Q ss_pred CCCCCcceEEEccCC-cCccc----CCcccccccccceeccCCCcccccc----chhhhcccCCcEEECccccccccCch
Q 036729 686 IGNCSKLLKLSLRGN-NLSGK----IPPEIGNLTALNVLNLQRNSLSGNI----PSTIQQCKKLYELRLSENFFTGSIPA 756 (970)
Q Consensus 686 l~~l~~L~~L~L~~N-~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~ip~ 756 (970)
+...++|++|+|++| .+... +...+...++|++|+|++|.+.... .+.+...+.|++|+|++|.++..--
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~- 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI- 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH-
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH-
Confidence 445667777777777 66532 1223334456666666666654322 2233444556666666665542100
Q ss_pred hhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeC--CCCcCccc----cCcccCCCCcCcEEecCCCccc
Q 036729 757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNI--SYNQLQGQ----VPASLGKLTSLHVLNLSNNHLQ 824 (970)
Q Consensus 757 ~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~l--s~N~l~~~----~p~~l~~l~~L~~l~ls~N~l~ 824 (970)
. .+...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 111 -----~---------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 -----L---------------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp -----H---------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred -----H---------------HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 0 12344555667888888 77887754 3344455578888888888764
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=3.9e-06 Score=79.55 Aligned_cols=35 Identities=6% Similarity=-0.026 Sum_probs=19.9
Q ss_pred CCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCc
Q 036729 114 QNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN 148 (970)
Q Consensus 114 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n 148 (970)
.+|++||++++.++...-..+..+++|++|+|++|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 35666666666655444444555555666665555
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=8.6e-06 Score=77.15 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=45.5
Q ss_pred ceeeEEEcCCCcCCCCCcccccCCcccccccccccc-cCCCCcccccCC----CCCcEEEccCCc-CccccCccccCCCC
Q 036729 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNM-LEGTIPSSIVLL----KSLQILNLANNS-LSGSIPVELSHLFN 259 (970)
Q Consensus 186 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 259 (970)
.+|++||++++.|+...-..+.++++|++|++++|. +++..-..++.+ ++|++|+|++|. ++...-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776665555555566666666666653 443333334432 356666666653 44333334445555
Q ss_pred CCEEEccCcc
Q 036729 260 LRYLNLLGNI 269 (970)
Q Consensus 260 L~~L~L~~n~ 269 (970)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 5555555553
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.74 E-value=0.0014 Score=59.09 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=49.6
Q ss_pred hhCCCCccc-ccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729 768 LDLSKNNFS-GEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828 (970)
Q Consensus 768 L~ls~N~l~-g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p 828 (970)
+|.+++.++ ..+|..+. .+|+.|||++|+|+..-+..|..+++|++|++++|++.|.+-
T Consensus 13 v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 677888876 45665443 468999999999998888889999999999999999999887
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.13 E-value=0.0014 Score=63.29 Aligned_cols=114 Identities=16% Similarity=0.177 Sum_probs=54.6
Q ss_pred CCCcceEEEccCC-cCccc----CCcccccccccceeccCCCcccccc----chhhhcccCCcEEECccccccccCchhh
Q 036729 688 NCSKLLKLSLRGN-NLSGK----IPPEIGNLTALNVLNLQRNSLSGNI----PSTIQQCKKLYELRLSENFFTGSIPADL 758 (970)
Q Consensus 688 ~l~~L~~L~L~~N-~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~ip~~l 758 (970)
+-+.|+.|+|++| .+... +.+.+..-+.|+.|+|++|++.... .+.+..-+.|+.|+|+.|.+...- .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G---a 115 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL---L 115 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH---H
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH---H
Confidence 3456666666664 54321 1122333345666666666654322 223334455555555555554211 0
Q ss_pred hhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCC---cCccc----cCcccCCCCcCcEEecCCCc
Q 036729 759 GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN---QLQGQ----VPASLGKLTSLHVLNLSNNH 822 (970)
Q Consensus 759 ~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N---~l~~~----~p~~l~~l~~L~~l~ls~N~ 822 (970)
.. +-..+..-+.|++|+|++| .+... +-+.+..-+.|..|++++|.
T Consensus 116 ---~a---------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ---AR---------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp ---HH---------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred ---HH---------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 11 1123344456777777754 33322 33344444667777766543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.00 E-value=0.0018 Score=62.54 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=26.7
Q ss_pred CceeeEEEcCCC-cCCCC----CcccccCCcccccccccccccCCCC----cccccCCCCCcEEEccCCcCc
Q 036729 185 LKHLTSLDLQMN-KLSGL----IPEAIHGCEELQKFAASNNMLEGTI----PSSIVLLKSLQILNLANNSLS 247 (970)
Q Consensus 185 l~~L~~L~Ls~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~ 247 (970)
-+.|++|+|++| +|... +.+++..-+.|+.|+|++|.+.+.. ...+..-+.|++|+|++|.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 345555555553 44322 1122333344444444444443221 222333445555555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.85 E-value=0.011 Score=53.11 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=38.9
Q ss_pred EEEccCCcCc-ccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccc
Q 036729 694 KLSLRGNNLS-GKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG 752 (970)
Q Consensus 694 ~L~L~~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 752 (970)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4556666654 23444332 357778888888877777777888888888888888763
No 165
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=71.00 E-value=0.78 Score=30.37 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=6.2
Q ss_pred eEEEEehhhHHHHH
Q 036729 868 AVVVIITAILFTSA 881 (970)
Q Consensus 868 ~~~~~~~~~~~~~~ 881 (970)
.+++++++++++++
T Consensus 12 aIAGiVvG~v~gv~ 25 (38)
T 2k1k_A 12 EIVAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHH
Confidence 44444444444333
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=55.01 E-value=9.2 Score=26.11 Aligned_cols=11 Identities=0% Similarity=-0.306 Sum_probs=4.5
Q ss_pred HHHHHHHhhhh
Q 036729 887 MLYIMLRIWLN 897 (970)
Q Consensus 887 ~~~~~~~~~~~ 897 (970)
+......++++
T Consensus 26 i~~~~~~~~RR 36 (44)
T 2l2t_A 26 VGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33444444433
No 167
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=54.77 E-value=6.1 Score=29.19 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=11.6
Q ss_pred ehhhHHHHHHHHHHHHHHHHHhhhhhh
Q 036729 873 ITAILFTSAVICLIMLYIMLRIWLNWR 899 (970)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (970)
+.+.++++++++.+.+|++.++|++.|
T Consensus 13 vlGg~~~lll~~glcI~ccvkcrhRrr 39 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSRHRRR 39 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444433333334444445554443
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.33 E-value=57 Score=26.98 Aligned_cols=13 Identities=0% Similarity=0.089 Sum_probs=5.4
Q ss_pred cCcCcCcccEEEc
Q 036729 637 QLSKCAKLAHLLL 649 (970)
Q Consensus 637 ~l~~~~~L~~L~L 649 (970)
+|.+|++|+.+.|
T Consensus 15 aF~~c~~L~~i~i 27 (100)
T 2lz0_A 15 LFAGNTVIREITV 27 (100)
T ss_dssp TTTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEc
Confidence 3444444444433
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.56 E-value=31 Score=28.59 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=18.7
Q ss_pred CCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEc
Q 036729 198 LSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNL 241 (970)
Q Consensus 198 i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 241 (970)
++.+...+|.+|.+|+.+.+..+ ++.....+|..|.+|+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 34444445555555555544432 12222333444444444444
No 170
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=20.96 E-value=34 Score=22.34 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=2.6
Q ss_pred EehhhHH
Q 036729 872 IITAILF 878 (970)
Q Consensus 872 ~~~~~~~ 878 (970)
++.++.+
T Consensus 15 II~~vma 21 (40)
T 1afo_A 15 IIFGVMA 21 (40)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
Done!